Citrus Sinensis ID: 004891

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-----
Protein Sequence
MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSSTSRARL
Secondary Structure (PSIPRED)
cccccEEEEEEccEEEEEEEcccccccccHHHHHHHHHHHHHHHcccccEEEEEEcccccEEEcccHHHHHcccccccccccccccHHHHHHHHHcccccEEEEEcccccHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHcccccEEccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccccccccccEEEEEcccccHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHccccccEEEEccccccccccEEEEEccccccHHHHHHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccccccccEEEEccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEccccccccccHHHHHHHHcHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEccccEEEEEEccccccHccHHHHHHHHHHHHHHHcccccEEEEEEccccEEEEccEHHHHccccccccHHHHHHccHHHHHHHHHcccccEEEEEccEEEcHHHHHHHHccEEEEEcccEEEcHHHHHccccccccccHHHHHHcHHHHHHHHHHcccEEHHHHHHcccccEEEccccHHHHHHHHHHHHHHccHcccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEccHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccHHHHccccEEEEcccccHHHHHHHHHHHHHHcccccEEEEccccccHHHHHcccccHHHEEEEEcccccccccEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccEEEEEcccccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHcHccEEEEEccccccccccHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccccccHHHHHHcc
Coil and Loop (DISEMBL)
maaprvtmevgnDGVAIITlinppvnalaIPIVAGLkdkfeeatsrddVKAIVLTgnggrfsggfdiNVFQkvhgagdvslmpDVSVELVVNLIEDCKKPIVAAVEGLALggglelamgchariaapktqlglpeltlgvipgfggtqrlprLVGLSKAIEMMLLSKsitseegwkLGLIDAVVTSEELLKVSRLWALDIAARRKpwirslhrtdklgsLSEAREVLKLARLQAkktapnmpqhqACLDVIEegivhggysGVLKEAKVFKELVMLDTSRGLVHVFFAQratskvpnvtdiglkprgvRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGvldysefkdVDMVIEAVIESVPLKQKIFSELekacpphcilatntstidlnivgektssqdriigahffspahvmpLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVgnctgfavnraffpysQSARLLVSLGVDvfridsairsfglpigpfqlldlagygvaaatskefdkafpdrsfqsPLVDLLLKsgrngkangkglytyekgskpkpdpsvlpiIEECRrlsnimpggkvpisVTEKEIVEMILFPVVNESCRVLEEGIVVrasdlddasvlgmsfpsyrggiVFWADAVGANYVYTSLKKWSQLygnffkpsrfleeratkgiplsapvsssstsrarl
Flexible Loop (DISEMBL)
maaprvtmevgnDGVAIITLINPPVNALAIPIVAGLKDKFeeatsrddvKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSksitseegwKLGLIDAVVTSEELLKVSRLWALdiaarrkpwirslhrtdklgslseAREVLKLARLQakktapnmpQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFaqratskvpnvtdiglkprgVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIeanvrglvtrgkltqdkaNNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLlksgrngkangkglytyekgskpkpdpsvLPIIEECrrlsnimpggkVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERAtkgiplsapvsssstsrarl
Low Complexity Region (SEG)
MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIvaaveglalggglelaMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTvgkiikkvpvvvgNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIplsapvsssstsrarl
Disordered region (IsUnstruct)
*********VGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL****EVLKLAR************HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFP***FQSPLVDLLL***************************VLPIIEECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFL************************
Disordered Region (DISOPRED)
***PRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG********DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA********************AREVLKLA*********NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT*************RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANV*****************LKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECRRLSN**********VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGI****************
Disordered Region (DISEMBL)
********EVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIP***************
Disordered Region (DISPRO)
**APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAP*S*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSSTSRARL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	725	2.2.26 [Sep-21-2011]
Q9ZPI6	721	Peroxisomal fatty acid be	yes	no	0.986	0.991	0.747	0.0
Q8W1L6	726	Peroxisomal fatty acid be	yes	no	0.995	0.994	0.698	0.0
Q39659	725	Glyoxysomal fatty acid be	N/A	no	0.982	0.982	0.595	0.0
O49809	725	Glyoxysomal fatty acid be	N/A	no	0.987	0.987	0.592	0.0
Q9ZPI5	725	Peroxisomal fatty acid be	no	no	0.983	0.983	0.591	0.0
Q6NYL3	718	Peroxisomal bifunctional	yes	no	0.933	0.942	0.360	1e-108
Q08426	723	Peroxisomal bifunctional	yes	no	0.929	0.932	0.339	1e-105
Q5R5M8	723	Peroxisomal bifunctional	yes	no	0.929	0.932	0.337	1e-103
A8A2L0	714	Fatty acid oxidation comp	yes	no	0.940	0.955	0.330	1e-102
A4WCW6	715	Fatty acid oxidation comp	yes	no	0.937	0.951	0.324	4e-98

>sp|Q9ZPI6|AIM1_ARATH Peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 OS=Arabidopsis thaliana GN=AIM1 PE=1 SV=1

 Score = 1096 bits (2835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/720 (74%), Positives = 632/720 (87%), Gaps = 5/720 (0%)

Query: 6   VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
           VTMEVGNDGVA+IT+ NPPVN+LA PI++GLK+KF +A  R+DVKAIVL GN GRFSGGF
Sbjct: 7   VTMEVGNDGVAVITISNPPVNSLASPIISGLKEKFRDANQRNDVKAIVLIGNNGRFSGGF 66

Query: 66  DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
           DINVFQ+VH  GD+SLMP+VSVELV NL+ED +KP+VAAVEGLALGGGLELAM CHAR+A
Sbjct: 67  DINVFQQVHKTGDLSLMPEVSVELVCNLMEDSRKPVVAAVEGLALGGGLELAMACHARVA 126

Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
           APK QLGLPELTLGVIPGFGGTQRLPRLVGL+KA +M+LLSKSI+SEEG KLGLIDA+V 
Sbjct: 127 APKAQLGLPELTLGVIPGFGGTQRLPRLVGLAKATDMILLSKSISSEEGHKLGLIDALVP 186

Query: 186 SEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 245
             ++L  SR WALDIA  RKP+++SLHRTDK+GSLSEAR +LK +R  AKK APNMPQH 
Sbjct: 187 PGDVLSTSRKWALDIAEGRKPFLQSLHRTDKIGSLSEARAILKNSRQLAKKIAPNMPQHH 246

Query: 246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKP 305
           AC++VIEEGI+HGGYSGVLKEA+VFK+LV+ DT++GLVHVFFAQRATSKVPNVTD+GLKP
Sbjct: 247 ACIEVIEEGIIHGGYSGVLKEAEVFKQLVLSDTAKGLVHVFFAQRATSKVPNVTDVGLKP 306

Query: 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT 365
           R ++KVAVIGGGLMGSGIATA +L+NI VVLKE+NSE+L+KGIK++EAN++ LV+RGKLT
Sbjct: 307 RPIKKVAVIGGGLMGSGIATALLLSNIRVVLKEINSEFLMKGIKSVEANMKSLVSRGKLT 366

Query: 366 QDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425
           QDKA  AL + KGVLDY+EF DVDMVIEAVIE++ LKQ IF E+EK C PHCILA+NTST
Sbjct: 367 QDKAGKALSLFKGVLDYTEFNDVDMVIEAVIENIQLKQNIFKEIEKVCSPHCILASNTST 426

Query: 426 IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVV 485
           IDL+++GEKT+S+DRI+GAHFFSPAH+MPLLEIVR++ TSAQVILDLM VGK IKKVPVV
Sbjct: 427 IDLDVIGEKTNSKDRIVGAHFFSPAHLMPLLEIVRSKNTSAQVILDLMAVGKAIKKVPVV 486

Query: 486 VGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAA 545
           VGNC GFAVNR FFPYSQ+A +L +LGVD+FRIDS I SFGLP+GPFQL DLAG+G+  A
Sbjct: 487 VGNCIGFAVNRTFFPYSQAAHMLANLGVDLFRIDSVITSFGLPLGPFQLGDLAGHGIGLA 546

Query: 546 TSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECRR 605
               + K + DR F+SP+ +LLLKSGRNGK NG+G Y YEKGSKPKPDPSVL I+E+ R+
Sbjct: 547 VGPIYAKVYGDRMFRSPMTELLLKSGRNGKINGRGYYIYEKGSKPKPDPSVLSIVEKSRK 606

Query: 606 LSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYR 665
           L+NIMPGGK PISVT+KEIVEMILFPVVNE+CRVL+EG+V+RASDLD ASVLGMSFPSYR
Sbjct: 607 LTNIMPGGK-PISVTDKEIVEMILFPVVNEACRVLDEGVVIRASDLDIASVLGMSFPSYR 665

Query: 666 GGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSSTSRARL 725
           GGIVFWAD VG  Y+Y  LKK S+ YG+FFKPSR+LEERA  G+ L    S S +SR++L
Sbjct: 666 GGIVFWADTVGPKYIYERLKKLSETYGSFFKPSRYLEERAMNGMLL----SESKSSRSKL 721

Involved in peroxisomal fatty acid beta-oxidation. Required for wound-induced jasmonate biosynthesis. Possesses enoyl-CoA hydratase activity against short chain substrates (C4-C6) and 3-hydroxyacyl-CoA dehydrogenase activity against chains of variable sizes (C6-C16).
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 5

>sp|Q8W1L6|MFP_ORYSJ Peroxisomal fatty acid beta-oxidation multifunctional protein OS=Oryza sativa subsp. japonica GN=MFP PE=1 SV=2

 Score = 1039 bits (2687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/724 (69%), Positives = 611/724 (84%), Gaps = 2/724 (0%)

Query: 3   APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFS 62
           A RVTMEVG DGVA++T+ NPPVNAL   I+ GLK+K+ EA  RDDVKAIVLTG GG+F 
Sbjct: 4   AIRVTMEVGADGVAVVTICNPPVNALHPIIIQGLKEKYAEAMDRDDVKAIVLTGAGGKFC 63

Query: 63  GGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHA 122
           GGFDINVF +VH  G+VSLMPDVSVELV NL+E  KKP VAA++GLALGGGLEL MGCHA
Sbjct: 64  GGFDINVFTEVHKTGNVSLMPDVSVELVSNLMEAGKKPSVAAIQGLALGGGLELTMGCHA 123

Query: 123 RIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDA 182
           RI+ P+ QLGLPELTLG+IPGFGGTQRLPRLVGL KAIEMML SK IT++EG + GL+DA
Sbjct: 124 RISTPEAQLGLPELTLGIIPGFGGTQRLPRLVGLPKAIEMMLQSKFITAKEGKEGGLVDA 183

Query: 183 VVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242
           + + +EL+K+SRLWAL+IA  RKPWIRSL RTD+LGSLSEAR VL  AR QAKK A N+P
Sbjct: 184 LCSPDELIKMSRLWALEIANYRKPWIRSLARTDRLGSLSEARSVLNSARQQAKKVAANLP 243

Query: 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIG 302
           QHQACLDV+EEG++ GG++GVLKEAKVFKELV+  TS+ LVH FFAQR T+KVP VTD+ 
Sbjct: 244 QHQACLDVMEEGVLCGGHAGVLKEAKVFKELVLSPTSKALVHAFFAQRLTTKVPGVTDVQ 303

Query: 303 LKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRG 362
           LKPR +RKVAVIGGGLMGSGIATA +++N  VVLKEVN ++L +G K I AN+ GLV RG
Sbjct: 304 LKPRKIRKVAVIGGGLMGSGIATALLVSNTSVVLKEVNPQFLQRGQKMIAANLEGLVKRG 363

Query: 363 KLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN 422
            LT+DK N A+ +LKG LDYS+FKDVDMVIEAVIE +PLKQ IFS+LEK CPPHCILATN
Sbjct: 364 SLTKDKMNKAMSLLKGALDYSDFKDVDMVIEAVIEKIPLKQSIFSDLEKVCPPHCILATN 423

Query: 423 TSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKV 482
           TSTIDLN+VGEKT+SQDRIIGAHFFSPAH+MPLLEIVRTE+TS Q ILDL+TVGK+IKKV
Sbjct: 424 TSTIDLNVVGEKTNSQDRIIGAHFFSPAHIMPLLEIVRTEKTSPQAILDLITVGKMIKKV 483

Query: 483 PVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGV 542
           PVVVGNCTGFAVNR FFPY+Q + LLVS+G+DVFRID  I SFG+P+GPFQL DLAGYGV
Sbjct: 484 PVVVGNCTGFAVNRTFFPYTQGSHLLVSIGIDVFRIDRVISSFGMPMGPFQLQDLAGYGV 543

Query: 543 AAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEE 602
           A A    +  AF  R+  S LVDL++++GR GK+NGKG Y YEKG KPKPDPSV  +I+E
Sbjct: 544 ALAVKDIYAAAFGTRNLDSNLVDLMVQNGRQGKSNGKGYYLYEKGGKPKPDPSVQVVIDE 603

Query: 603 CRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFP 662
            RR +  MPGGK P+++++++I+EMI FPVVNE+CRV++E +V+RASDLD AS+LGM FP
Sbjct: 604 YRRCAKTMPGGK-PVTLSDQDILEMIFFPVVNEACRVMDENVVIRASDLDIASILGMGFP 662

Query: 663 SYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAP-VSSSSTS 721
            +RGG+VFWAD +GA Y+++ L KW+++YG+FFKPS +LE+RA + +PLSAP  +  ++S
Sbjct: 663 KFRGGLVFWADTIGAPYIHSKLSKWTEIYGDFFKPSSYLEDRAKRSLPLSAPNATQQASS 722

Query: 722 RARL 725
           R+R+
Sbjct: 723 RSRM 726

Multifunctional enzyme involved in fatty acid beta-oxidation. Also binds to RNA and microtubules. Possible role in subcellular mRNA localization and RNA-cytoskeleton interactions.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q39659|MFPA_CUCSA Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Cucumis sativus PE=1 SV=1

 Score =  897 bits (2317), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/714 (59%), Positives = 552/714 (77%), Gaps = 2/714 (0%)

Query: 2   AAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
           A  R  MEVG DGVAIIT+INPPVN+L+  ++  L+D +E+A  RDDVKAIV+TG  G+F
Sbjct: 5   AKGRTVMEVGTDGVAIITIINPPVNSLSFDVLFSLRDSYEQALRRDDVKAIVVTGAKGKF 64

Query: 62  SGGFDINVFQKVHGA-GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           SGGFDI  F  + G  G+   + ++S+E++ ++ E  +KP VAA++GLALGGGLE+AM C
Sbjct: 65  SGGFDITAFGVLQGGKGEQPNVRNISIEMITDIFEAARKPAVAAIDGLALGGGLEVAMAC 124

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
           HARI+ P  QLGLPEL LG+IPGFGGTQRLPRLVGLSKA+EMML SK I  +E   LGL+
Sbjct: 125 HARISTPTAQLGLPELQLGIIPGFGGTQRLPRLVGLSKALEMMLTSKPIKGQEAHSLGLV 184

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
           DA+V  EEL+  +R WAL+I  RR+PW+ SLHRTDKL SL+EAR++  LAR QAKK  PN
Sbjct: 185 DAIVPPEELINTARRWALEILERRRPWVHSLHRTDKLESLAEARKIFNLARAQAKKQYPN 244

Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
           +    AC+D +E G+V G  +G+ KEA+ F+ L+  DT + L+H+FFAQR+T+KVP VTD
Sbjct: 245 LKHTIACIDAVETGVVSGPRAGLWKEAEEFQGLLHSDTCKSLIHIFFAQRSTTKVPGVTD 304

Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
           +GL PR ++KVA++GGGLMGSGIATA IL+N +VVLKEVN ++L  GI  + AN++  V 
Sbjct: 305 LGLVPRQIKKVAIVGGGLMGSGIATALILSNYHVVLKEVNDKFLQAGIDRVRANLQSRVK 364

Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
           +G +T +K   ++ +LKGVL+Y  FKDVDMVIEAVIE+V LKQ+IFS+LEK CPPHC+LA
Sbjct: 365 KGNMTNEKFEKSISLLKGVLNYESFKDVDMVIEAVIENVSLKQQIFSDLEKYCPPHCMLA 424

Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
           TNTSTIDL ++GE+  S+DRIIGAHFFSPAH+MPLLEIVRT+ T+AQVI+DL+ VGK IK
Sbjct: 425 TNTSTIDLELIGERIKSRDRIIGAHFFSPAHIMPLLEIVRTKHTAAQVIVDLLDVGKNIK 484

Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
           K PVVVGNCTGFAVNR FFPYSQ+A LL   GVD ++ID AI  FG+P+GPF+L DL G+
Sbjct: 485 KTPVVVGNCTGFAVNRMFFPYSQAAILLAEHGVDPYQIDRAISKFGMPMGPFRLCDLVGF 544

Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 600
           GVAAAT+ +F +AFP+R+++S L+ L+ +    G++  KG Y Y+K  K  P+P +   I
Sbjct: 545 GVAAATASQFVQAFPERTYKSMLIPLMQEDKNAGESTRKGFYVYDKNRKAGPNPELKKYI 604

Query: 601 EECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMS 660
           E+ R  S +    K+   + EK+IVEMI FPVVNE+CRVL EGI V+A+DLD A V+GM 
Sbjct: 605 EKARNSSGVSVDPKL-TKLPEKDIVEMIFFPVVNEACRVLAEGIAVKAADLDIAGVMGMG 663

Query: 661 FPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAP 714
           FPSYRGG++FWAD++G+NY+Y+ L++WS+ YG FFKP  +L ERA +G  LSAP
Sbjct: 664 FPSYRGGLMFWADSLGSNYIYSRLEEWSKQYGGFFKPCGYLAERAVQGATLSAP 717

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|O49809|MFPA_BRANA Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Brassica napus PE=2 SV=2

 Score =  862 bits (2227), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/721 (59%), Positives = 551/721 (76%), Gaps = 5/721 (0%)

Query: 6   VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
            T+EVG DGVA+ITLINPPVN+L+  ++  LK  +EEA SR+DVKAIV+TG  G+FSGGF
Sbjct: 9   TTIEVGADGVAVITLINPPVNSLSFDVLYSLKSNYEEALSRNDVKAIVVTGAKGKFSGGF 68

Query: 66  DINVFQKVH-GAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARI 124
           DI+ F ++  G      +  +S++++ +L+E  KKP VAA++GLALGGGLEL+M CHARI
Sbjct: 69  DISGFGEIQKGTMKEPKVGYISIDILTDLLEAAKKPSVAAIDGLALGGGLELSMACHARI 128

Query: 125 AAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV 184
           +AP  QLGLPEL LGVIPGFGGTQRLPRLVGL+KA+EM+L SK + +EEG  LGLIDAVV
Sbjct: 129 SAPGAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVV 188

Query: 185 TSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244
              ELL  +R WALDIA RRKPW+ S+ +TDKL  L EARE+LK A+ Q ++ APNM   
Sbjct: 189 PPAELLNAARRWALDIAERRKPWVSSVLKTDKLPPLGEAREILKFAKDQTRRQAPNMKHP 248

Query: 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLK 304
             CL+ +E GIV G  +G+ KEA+V  E++ LDT++GL+HVFF+QR T+KVP VTD GL 
Sbjct: 249 LMCLEAVEVGIVSGSRAGLEKEAQVGSEVINLDTTKGLIHVFFSQRGTTKVPGVTDRGLV 308

Query: 305 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL 364
           PR + KVA+IGGGLMGSGIATA IL+N  V+LKEVN ++L  GI  ++AN++  V +GK+
Sbjct: 309 PRKINKVAIIGGGLMGSGIATALILSNYSVILKEVNEKFLEAGIGRVKANLQSRVKKGKM 368

Query: 365 TQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424
           +++K    + +LKG LDY  F+DVDMVIEAVIE++ LKQ+IF++LEK CP HCILA+NTS
Sbjct: 369 SKEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTS 428

Query: 425 TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPV 484
           TIDLN +GE+T SQDRIIGAHFFSPAHVMPLLEIVRT  TSAQVI+DL+ VGK I+K PV
Sbjct: 429 TIDLNKIGERTKSQDRIIGAHFFSPAHVMPLLEIVRTNHTSAQVIVDLLDVGKKIRKTPV 488

Query: 485 VVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAA 544
           VVGNCTGFAVNR FFPY+Q+A  LV  G D + ID A+  FG+P+GPF+L DL G+GVA 
Sbjct: 489 VVGNCTGFAVNRMFFPYTQAAMFLVEHGTDPYLIDKAVSKFGMPMGPFRLCDLVGFGVAI 548

Query: 545 ATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECR 604
           AT+ +F + FP+R+++S ++ L+ +  R G+A  KG Y Y+   K KPDP +   I++ R
Sbjct: 549 ATATQFIENFPERTYKSMIIPLMQEDKRAGEATRKGFYLYDDRRKAKPDPEIKNYIDKAR 608

Query: 605 RLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSY 664
            +S   P  K+   ++EKEI+EM  FPVVNE+CRV  EGI V+A+DLD A + GM FP Y
Sbjct: 609 SVSGAKPDPKLE-KLSEKEIIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIFGMGFPPY 667

Query: 665 RGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSSTSRAR 724
           RGGI+FWAD++G+ Y+Y+ L++WS+ YG FFKP  FL ER +KG PLSAP+     SR+R
Sbjct: 668 RGGIMFWADSIGSKYIYSKLEEWSKAYGEFFKPCAFLAERGSKGAPLSAPLEQ---SRSR 724

Query: 725 L 725
           L
Sbjct: 725 L 725

Brassica napus (taxid: 3708)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q9ZPI5|MFP2_ARATH Peroxisomal fatty acid beta-oxidation multifunctional protein MFP2 OS=Arabidopsis thaliana GN=MFP2 PE=1 SV=1

 Score =  852 bits (2202), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/719 (59%), Positives = 548/719 (76%), Gaps = 6/719 (0%)

Query: 5   RVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           +  MEVG DGVA+ITLINPPVN+L+  ++  LK  +EEA SR+DVKAIV+TG  GRFSGG
Sbjct: 8   KTVMEVGGDGVAVITLINPPVNSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGRFSGG 67

Query: 65  FDINVFQKVHGAGDVSLMPD---VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
           FDI+ F ++   G+V   P    +S++++ +L+E  +KP VAA++GLALGGGLELAM CH
Sbjct: 68  FDISGFGEMQ-KGNVK-EPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACH 125

Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
           ARI+AP  QLGLPEL LGVIPGFGGTQRLPRLVGL+KA+EM+L SK + +EEG  LGLID
Sbjct: 126 ARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLID 185

Query: 182 AVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241
           AVV   EL+  +R WALDI  RRKPW+ S+ +TDKL  L EARE+L  A+ Q  K APNM
Sbjct: 186 AVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLGEAREILTFAKAQTLKRAPNM 245

Query: 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDI 301
                CLD IE GIV G  +G+ KEA+V  ++V LDT++GL+HVFF+QR T+KVP VTD 
Sbjct: 246 KHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVTDR 305

Query: 302 GLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTR 361
           GL PR ++KVA+IGGGLMGSGIATA IL+N  V+LKEVN ++L  GI  ++AN++  V +
Sbjct: 306 GLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRK 365

Query: 362 GKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
           G ++Q+K    + +LKG LDY  F+DVDMVIEAVIE++ LKQ+IF++LEK CP HCILA+
Sbjct: 366 GSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILAS 425

Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKK 481
           NTSTIDLN +GE+T SQDRI+GAHFFSPAH+MPLLEIVRT  TSAQVI+DL+ VGK IKK
Sbjct: 426 NTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKK 485

Query: 482 VPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYG 541
            PVVVGNCTGFAVNR FFPY+Q+A  LV  G D + ID AI  FG+P+GPF+L DL G+G
Sbjct: 486 TPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRAISKFGMPMGPFRLCDLVGFG 545

Query: 542 VAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIE 601
           VA AT+ +F + F +R+++S ++ L+ +  R G+A  KG Y Y+   K KPDP +   IE
Sbjct: 546 VAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGFYLYDDKRKAKPDPELKKYIE 605

Query: 602 ECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSF 661
           + R +S +    K+  +++EK+I+EM  FPVVNE+CRV  EGI V+A+DLD A ++GM F
Sbjct: 606 KARSISGVKLDPKLA-NLSEKDIIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIMGMGF 664

Query: 662 PSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSST 720
           P YRGGI+FWAD++G+ Y+Y+ L +WS+ YG FFKP  FL ER +KG+ LSAPV  +S+
Sbjct: 665 PPYRGGIMFWADSIGSKYIYSRLDEWSKAYGEFFKPCAFLAERGSKGVLLSAPVKQASS 723

Involved in peroxisomal fatty acid beta-oxidation during seed germination. Possesses enoyl-CoA hydratase activity against long chain substrates (C14-C18) and 3-hydroxyacyl-CoA dehydrogenase activity against chains of variable sizes (C6-C18).

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q6NYL3|ECHP_DANRE Peroxisomal bifunctional enzyme OS=Danio rerio GN=ehhadh PE=2 SV=1

 Score =  394 bits (1011), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 261/723 (36%), Positives = 388/723 (53%), Gaps = 46/723 (6%)

Query: 9   EVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDIN 68
           E+    VA+ITL NPPVNAL+  +   +    E A S   V A+V+ G  GRF GG DI 
Sbjct: 5   ELVKRSVALITLTNPPVNALSSAVRHAISKTMERALSDPKVTAVVICGENGRFCGGADIR 64

Query: 69  VFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
            F     AG +   P V +   ++ IE  +KP+VAA+EG+ALGGG ELA+ CH RIA  K
Sbjct: 65  EF-----AGPLRGPPLVPL---LDAIEAGEKPVVAAIEGVALGGGFELALVCHYRIAHYK 116

Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
            +LGLPE+TLG++P  GGTQRLPRL+G+  A+E++   + ++++E  KLG++D V T + 
Sbjct: 117 ARLGLPEVTLGILPAAGGTQRLPRLIGIPAALELITTGRHVSAQEALKLGMVDQV-TEQN 175

Query: 189 LLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEA--REVLKLARLQAKKTAPNMPQHQA 246
             +V+  +AL      KP   S  R   L +        + + A +Q +K A  +    A
Sbjct: 176 TCEVALEFALKAVG--KPL--SSRRLSMLTTPCPPGLDGIFEAATMQVQKKARGVMAPLA 231

Query: 247 CLDVIEEGIVHGGYS-GVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK--VPNVTDIG- 302
           C+  +    +   YS G+ +E ++   L     ++ L + FFAQR   K  +P+      
Sbjct: 232 CVQAVRAATLP--YSEGIKREGELMATLFSSGQAQALQYSFFAQRTAEKWTLPSGAQWNN 289

Query: 303 LKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRG 362
            KPR ++  AVIG G MG GI  +  L  + + +  V SE  L  ++T    V G++ R 
Sbjct: 290 SKPREIQSAAVIGLGTMGRGIVVS--LARVGISVIAVESEKKL--LETGRQMVIGMLER- 344

Query: 363 KLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN 422
              +   + +L +LK  L   + KDVD+VIEAV E + LK++IF EL + C P  +L +N
Sbjct: 345 DAKRRGVSASLNLLKFSLSLQDLKDVDLVIEAVFEDMALKKQIFRELSRVCRPATLLCSN 404

Query: 423 TSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKV 482
           TS +D++ + + T     + G HFFSPAHVM LLE+V   R+S + I   M++GK + KV
Sbjct: 405 TSGLDVDALADVTDRPQLVAGMHFFSPAHVMKLLEVVCGPRSSKEAIATAMSLGKRMGKV 464

Query: 483 PVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGV 542
            V VGNC GF  NR   PY + A  L+  G    +ID A+  FG  +G F++ DLAG  V
Sbjct: 465 SVAVGNCPGFVGNRMLMPYLEQATFLLEEGATPQQIDKALEDFGFAMGVFRMSDLAGLDV 524

Query: 543 AAATSKE-------FDKAFPDRSFQ----SPLVDLLLKSGRNGKANGKGLYTYEK--GSK 589
                KE        D   P R  Q     P+ D++ + GR G+  G+G Y Y+K   + 
Sbjct: 525 GWRVRKESGLTGPDVDPKDPPRRRQGRKYCPIPDMVCQQGRFGQKTGRGWYMYDKPGDTN 584

Query: 590 PKPDPSVLPIIEECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRAS 649
            KPDP +  ++E  R    I P       +T++EI+E  LF + NE  R+L++ I  +  
Sbjct: 585 AKPDPLIQNLLETYRSRYGIQPR-----KITDQEIIERCLFALANEGFRILKDKIAGQPE 639

Query: 650 DLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN--FFKPSRFLEERATK 707
           D+D   + G  FP +RGG +F+A  VG   V   L+ +     +    +PS  L++   +
Sbjct: 640 DIDVIYLFGYGFPRHRGGPMFYASMVGLERVLERLEYYHHALPDVPHLEPSPLLKKLVAR 699

Query: 708 GIP 710
           G P
Sbjct: 700 GSP 702

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q08426|ECHP_HUMAN Peroxisomal bifunctional enzyme OS=Homo sapiens GN=EHHADH PE=1 SV=3

 Score =  381 bits (979), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 246/725 (33%), Positives = 389/725 (53%), Gaps = 51/725 (7%)

Query: 12  NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           ++ +A+I L NPPVNA++  ++  +K+  ++A     +KAIV+ G  G+FS G DI  F 
Sbjct: 8   HNALALIRLRNPPVNAISTTLLRDIKEGLQKAVIDHTIKAIVICGAEGKFSAGADIRGFS 67

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
                G       +++  VV+ I+  +KP+VAA++G+A GGGLELA+GCH RIA  + Q+
Sbjct: 68  APRTFG-------LTLGHVVDEIQRNEKPVVAAIQGMAFGGGLELALGCHYRIAHAEAQV 120

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS---EE 188
           GLPE+TLG++PG  GTQ LPRL G+  A++++   + I ++E  KLG++D VV S   EE
Sbjct: 121 GLPEVTLGLLPGARGTQLLPRLTGVPAALDLITSGRRILADEALKLGILDKVVNSDPVEE 180

Query: 189 LLKVS-RLWALDIAARR---KPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244
            ++ + R+    + +RR   KP I+SL   D +   SEA  +LK+ R       P     
Sbjct: 181 AIRFAQRVSDQPLESRRLCNKP-IQSLPNMDSI--FSEA--LLKMRRQH-----PGCLAQ 230

Query: 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLK 304
           +AC+  ++  + +    G+ KE ++F  L+    +R L + FFA+R  +K    +    K
Sbjct: 231 EACVRAVQAAVQYPYEVGIKKEEELFLYLLQSGQARALQYAFFAERKANKWSTPSGASWK 290

Query: 305 ---PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTR 361
               R V  V V+G G MG GI  +     I V+  + +   L    K I + +    ++
Sbjct: 291 TASARPVSSVGVVGLGTMGRGIVISFARARIPVIAVDSDKNQLATANKMITSVLEKEASK 350

Query: 362 GKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
            + +    +     L   +   E   VD+VIEAV E + LK+++F+EL   C P   L T
Sbjct: 351 MQQSGHPWSGPKPRLTSSV--KELGGVDLVIEAVFEEMSLKKQVFAELSAVCKPEAFLCT 408

Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKK 481
           NTS +D++ +   T     +IG HFFSPAHVM LLE++ ++ +S   I  +M + K IKK
Sbjct: 409 NTSALDVDEIASSTDRPHLVIGTHFFSPAHVMKLLEVIPSQYSSPTTIATVMNLSKKIKK 468

Query: 482 VPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYG 541
           + VVVGNC GF  NR   PY   A  L+  G     +D  +  FG  +GPF++ DLAG  
Sbjct: 469 IGVVVGNCFGFVGNRMLNPYYNQAYFLLEEGSKPEEVDQVLEEFGFKMGPFRVSDLAGLD 528

Query: 542 VAAATSKEFDKAFP------------DRSFQSPLVDLLLKSGRNGKANGKGLYTYEK--G 587
           V   + K      P            +R +  P+ D+L + GR G+  GKG Y Y+K  G
Sbjct: 529 VGWKSRKGQGLTGPTLLPGTPARKRGNRRY-CPIPDVLCELGRFGQKTGKGWYQYDKPLG 587

Query: 588 SKPKPDPSVLPIIEECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVR 647
              KPDP +   +   R+  +I P      ++++ EI+E  L+ ++NE+ R+L EGI   
Sbjct: 588 RIHKPDPWLSKFLSRYRKTHHIEPR-----TISQDEILERCLYSLINEAFRILGEGIAAS 642

Query: 648 ASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF--FKPSRFLEERA 705
              +D   + G  +P ++GG +F+A  VG   V   L+K+ +   +    +PS +L++ A
Sbjct: 643 PEHIDVVYLHGYGWPRHKGGPMFYASTVGLPTVLEKLQKYYRQNPDIPQLEPSDYLKKLA 702

Query: 706 TKGIP 710
           ++G P
Sbjct: 703 SQGNP 707

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q5R5M8|ECHP_PONAB Peroxisomal bifunctional enzyme OS=Pongo abelii GN=EHHADH PE=2 SV=1

 Score =  377 bits (967), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 245/725 (33%), Positives = 387/725 (53%), Gaps = 51/725 (7%)

Query: 12  NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           ++ +A+I L NPPVNA++  ++  +K+  ++A     +KAIV+ G  G+FS G DI+ F 
Sbjct: 8   HNALALIRLRNPPVNAISTALLRDIKEGLQKAVIDHTIKAIVICGAEGKFSAGADIHGFS 67

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
                G        ++  VV+ I+  +KP+VAA++G+A GGGLELA+GCH RIA  + Q+
Sbjct: 68  APRTFG-------FTLGHVVDEIQRNEKPVVAAIQGMAFGGGLELALGCHYRIAHSEAQV 120

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS---EE 188
           GLPE+TLG++PG  GTQ LPRL+G+  A++++   + I ++E  KLG++D VV S   EE
Sbjct: 121 GLPEVTLGLLPGARGTQLLPRLIGVPAALDLITSGRHILADEALKLGILDKVVNSDPVEE 180

Query: 189 LLKVS-RLWALDIAARR---KPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244
            ++ + R+    + +RR   KP I+SL   D +   SEA  +LK+ R       P     
Sbjct: 181 AIRFAQRVSDQPLESRRLCNKP-IQSLPNMDTI--FSEA--LLKMRRQH-----PGCLAQ 230

Query: 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLK 304
           +AC+  ++  + +    GV KE ++F  L     +R L + F A+R  +K    +    K
Sbjct: 231 EACVRAVQAAVQYPYEVGVKKEEELFLYLFQSGQARALQYAFLAERKANKWSTPSGASWK 290

Query: 305 ---PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTR 361
               R V  V V+G G MG GI  +     I V+  + +   L    K I + +    ++
Sbjct: 291 TASARPVSSVGVVGLGTMGRGIVISFARARIPVIAVDSDKNQLATANKMITSVLEKEASK 350

Query: 362 GKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
            + +    +     L   +   E   VD+VIEAV E + LK+++F+EL   C P   L T
Sbjct: 351 MQQSGHPWSGPKPRLTSSM--KELGGVDLVIEAVFEEMSLKKQVFAELSAICKPEAFLCT 408

Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKK 481
           NTS +D++ +   T     +IG HFFSPAHVM LLE++ ++ +S   I  +M + K IKK
Sbjct: 409 NTSALDVDEIASSTDRPHLVIGTHFFSPAHVMKLLEVIPSQYSSPTTIATVMNLSKKIKK 468

Query: 482 VPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYG 541
           + VVVGNC GF  NR   PY   A  L+  G     +D  +  FG  +GPF++ DLAG  
Sbjct: 469 IGVVVGNCFGFVGNRMLNPYYNQAYFLLEEGSKPEEVDQVLEEFGFKMGPFRVSDLAGLD 528

Query: 542 VAAATSKEFDKAFP------------DRSFQSPLVDLLLKSGRNGKANGKGLYTYEK--G 587
           V   + K      P            +R +  P+ D+L + GR G+  GKG Y Y+K  G
Sbjct: 529 VGWKSRKGQGLTGPTLPPGTPARKRGNRRY-CPIPDVLCELGRFGQKTGKGWYQYDKPLG 587

Query: 588 SKPKPDPSVLPIIEECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVR 647
              K DP +   + + R   +I P      ++++ EI+E  L+ ++NE+ R+L EGI   
Sbjct: 588 RIHKADPWLSKFLSQYRETHHIEPR-----TISQDEILERCLYSLINEAFRILGEGIAAS 642

Query: 648 ASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF--FKPSRFLEERA 705
              +D   + G  +P ++GG +F+A  VG   V   L+K+ +   +    +PS +L++ A
Sbjct: 643 PEHIDVVYLHGYGWPRHKGGPMFYASTVGLPTVLEKLQKYYRQNPDIPQLEPSDYLKKLA 702

Query: 706 TKGIP 710
           ++G P
Sbjct: 703 SQGNP 707

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|A8A2L0|FADJ_ECOHS Fatty acid oxidation complex subunit alpha OS=Escherichia coli O9:H4 (strain HS) GN=fadJ PE=3 SV=1

 Score =  374 bits (960), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 236/715 (33%), Positives = 374/715 (52%), Gaps = 33/715 (4%)

Query: 7   TMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSG 63
           T+ V  D +AIIT+  P   +N L     + ++   ++     +++ +V ++     F  
Sbjct: 8   TLNVRLDNIAIITIDVPDEKMNTLKAEFASQVRAIIKQLRENKELRGVVFISAKPDNFIA 67

Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
           G DIN+      A +   +     +L+   I     P++AA+ G  LGGGLELA+ CH R
Sbjct: 68  GADINMIGNCKTAQEAEALARQGQQLMAE-IHALPIPVIAAIHGACLGGGLELALACHGR 126

Query: 124 IAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
           +    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D
Sbjct: 127 VCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVD 186

Query: 182 AVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKL--GSLSEAREVLKLARLQAKKTAP 239
            VV    LL+     A+++A + +P  R L   +++  G L  A     + +    KT  
Sbjct: 187 DVVPHSILLEA----AVELAKKDRPSSRPLPVRERILAGPLGRALLFKMVGKKTEHKTQG 242

Query: 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVT 299
           N P  +  L+V+E G+  G  SG   EA+ F EL M   S+ L  +FFA     K P   
Sbjct: 243 NYPATERILEVVETGLAQGTSSGYDAEARAFGELAMTPQSQALRSIFFASTDVKKDPGSD 302

Query: 300 DIGLKPRGVRKVAVIGGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGL 358
                P  +  V ++GGGLMG+GIA        + V +K++N + +   +K     + G 
Sbjct: 303 ---APPAPLNSVGILGGGLMGAGIAYVTACKAGLPVRIKDINPQGINHALKYSWDQLEGK 359

Query: 359 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCI 418
           V R  L   + +  L ++ G  DY  F   D++IEAV E++ LKQ++ +E+E+ C  H I
Sbjct: 360 VRRRHLKASERDKQLALISGTTDYRGFAHRDLIIEAVFENLELKQQMVAEVEQNCAAHTI 419

Query: 419 LATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKI 478
            A+NTS++ +  +    +  +++IG HFFSP   MPL+EI+    TSAQ I   + + K 
Sbjct: 420 FASNTSSLPIGDIAAHAARPEQVIGLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKK 479

Query: 479 IKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLA 538
             K P+VV +  GF VNR   PY   A  +++ G  V  ID+A+  FG P+GP QLLD  
Sbjct: 480 QGKTPIVVRDKAGFYVNRILAPYINEAIRMLTEGERVEHIDAALVKFGFPVGPIQLLDEV 539

Query: 539 GYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSKPKP--D 593
           G           + A+ +R F +P  +V  +L   R G+ NG+G Y Y +KG K K   D
Sbjct: 540 GIDTGTKIIPVLEAAYGER-FSAPANVVSSILNDDRKGRKNGRGFYLYGQKGRKSKKQVD 598

Query: 594 PSVLPIIEECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDD 653
           P++ P+I           G +    ++  ++ E  +  ++NE+ R ++E ++    D D 
Sbjct: 599 PAIYPLI-----------GAQGQGRLSAPQVAERCVMLMLNEAVRCVDEQVIRSVRDGDI 647

Query: 654 ASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKG 708
            +V G+ FP + GG   + D++GA  V   +++ +  YG+ F P   L E   +G
Sbjct: 648 GAVFGIGFPPFLGGPFRYIDSLGAGEVVAIMQRLATQYGSRFTPCERLVEMGARG 702

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Escherichia coli O9:H4 (strain HS) (taxid: 331112)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|A4WCW6|FADJ_ENT38 Fatty acid oxidation complex subunit alpha OS=Enterobacter sp. (strain 638) GN=fadJ PE=3 SV=1

 Score =  359 bits (922), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 231/711 (32%), Positives = 371/711 (52%), Gaps = 31/711 (4%)

Query: 7   TMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSG 63
           T+ V  D +A++T+  P   +N L       ++   ++     +++ ++ ++     F  
Sbjct: 8   TLNVRLDNIAVVTIDVPGEKMNTLKAEFGVQVRSILKQVRDNKNIRGLIFISAKSDNFIA 67

Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
           G DIN+  +   A +   +     +++   I     P++AA+ G  LGGGLELA+ CH+R
Sbjct: 68  GADINMIARAKSAQEAEELARQGQQIMAE-IHGLSIPVIAAIHGACLGGGLELALACHSR 126

Query: 124 IAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
           +     KT LGLPE+ LG++PG GGTQRLPRLVG+S A+EM+L  K +   +  K+GL+D
Sbjct: 127 VCTDDAKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALEMILTGKQLRPRQALKVGLVD 186

Query: 182 AVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKL--GSLSEAREVLKLARLQAKKTAP 239
            VV    LL      A+++A + +   R L   +++  G L  A    ++ +   +KT  
Sbjct: 187 EVVPHSILLTA----AVELAQKERQASRHLPVRERILAGPLGRALLFNRVGKKTEQKTKG 242

Query: 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVT 299
           N P  +  LDVIE G+  G  SG   EAK F EL M   S+ L  +FFA     K P  +
Sbjct: 243 NYPATKRILDVIETGLSQGSSSGYAAEAKAFGELAMTPQSQALRSIFFASTEVKKDPG-S 301

Query: 300 DIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLV 359
           ++   P     V   G    G    TA     + V +K++N++ +   ++     +   V
Sbjct: 302 EVAPGPLNAIGVLGGGLMGGGISFVTAS-KGKLPVRIKDINAKGINHALQYSWQLLDQKV 360

Query: 360 TRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCIL 419
            R  +   + + AL ++ G +D+S FK  D+VIEAV E + LKQ++ +++E+ C PH I 
Sbjct: 361 KRRHIKASERDRALALISGTIDFSGFKHRDVVIEAVFEDLQLKQQMVADVEQYCAPHTIF 420

Query: 420 ATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKII 479
           A+NTS++ +  +    +  +++IG HFFSP   MPL+E++  E TSAQ +  ++ + K  
Sbjct: 421 ASNTSSLPIGDIAANAARPEQVIGLHFFSPVEKMPLVEVIPHESTSAQTVATVVKLAKRQ 480

Query: 480 KKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAG 539
            K P+VV +  GF VNR   PY   A  L++ G  V  +D A+  FG P+GP QLLD  G
Sbjct: 481 GKTPIVVADKAGFYVNRILAPYINEAMRLLTEGEKVENVDDALVKFGFPVGPIQLLDEVG 540

Query: 540 YGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTYE---KGSKPKPDP 594
                      + A+ +R F  P  +V  +L   R G+ NG+G Y Y    + SK + DP
Sbjct: 541 IDTGTKIIPVLEAAYGER-FSPPANVVSAILNDDRKGRKNGRGFYLYAAKGRKSKKQVDP 599

Query: 595 SVLPIIEECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDA 654
           SV  +I       N    GK    +T ++  E  +  ++NE+ R  +E ++  A D D  
Sbjct: 600 SVYGLI-------NASGQGK----LTAQQCAERCVMMMLNEAARCFDEKVIKNARDGDIG 648

Query: 655 SVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERA 705
           +V G+ FP + GG   + D++GA  V  +L++ + LYG+ F P   L++ A
Sbjct: 649 AVFGIGFPPFLGGPFRYMDSLGAGEVVATLQRLASLYGSRFTPCETLKQMA 699

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Enterobacter sp. (strain 638) (taxid: 399742)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	725
224142159	726	predicted protein [Populus trichocarpa]	0.979	0.977	0.836	0.0
225445200	724	PREDICTED: peroxisomal fatty acid beta-o	0.998	1.0	0.794	0.0
255546439	724	3-hydroxyacyl-CoA dehyrogenase, putative	0.998	1.0	0.802	0.0
315419009	721	MFP [Gossypium hirsutum]	0.993	0.998	0.809	0.0
406365505	724	cinnamoyl-CoA hydratase-dehydrogenase [P	0.976	0.977	0.812	0.0
356520511	724	PREDICTED: peroxisomal fatty acid beta-o	0.998	1.0	0.791	0.0
357500631	722	Peroxisomal fatty acid beta-oxidation mu	0.995	1.0	0.791	0.0
449443155	724	PREDICTED: peroxisomal fatty acid beta-o	0.998	1.0	0.754	0.0
356531273	724	PREDICTED: peroxisomal fatty acid beta-o	0.998	1.0	0.783	0.0
449515444	719	PREDICTED: peroxisomal fatty acid beta-o	0.991	1.0	0.748	0.0

>gi|224142159|ref|XP_002324426.1| predicted protein [Populus trichocarpa] gi|222865860|gb|EEF02991.1| predicted protein [Populus trichocarpa]

 Score = 1209 bits (3128), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 595/711 (83%), Positives = 655/711 (92%), Gaps = 1/711 (0%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           MA P VTMEVGNDGVA++TLINPPVNALAIPI+AGLK+KF+EAT R+DVKA+VLTG GGR
Sbjct: 1   MAKPHVTMEVGNDGVAVVTLINPPVNALAIPIIAGLKEKFDEATRRNDVKALVLTGKGGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDINVFQKVH  GD+SLMPDVSVELVVN IEDCKKP+VAAVEGLALGGGLELAMGC
Sbjct: 61  FSGGFDINVFQKVHATGDISLMPDVSVELVVNTIEDCKKPVVAAVEGLALGGGLELAMGC 120

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
           HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL+GLSKAIE+MLLSK I SEEG KLGLI
Sbjct: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLLGLSKAIEIMLLSKPIMSEEGKKLGLI 180

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
           DA+V S+ELLKVSR WALDI+ RRKPW+RSLHRTDK+GSLSEAREVLK AR QAKK APN
Sbjct: 181 DAIVPSQELLKVSRQWALDISERRKPWLRSLHRTDKIGSLSEAREVLKAARQQAKKIAPN 240

Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
           +PQHQA LDV+EEGI+HGGY+GVLKEAKVFKELV+ +TS+GLVHVFFAQR TSK+P VTD
Sbjct: 241 VPQHQALLDVMEEGIIHGGYNGVLKEAKVFKELVLTETSKGLVHVFFAQRMTSKIPKVTD 300

Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
           +GLKPR ++KVAVIGGGLMGSGIATA I++NI+VVLKE+NSEYL KG KTIEANVR LVT
Sbjct: 301 VGLKPRHIKKVAVIGGGLMGSGIATALIVSNIHVVLKEINSEYLQKGTKTIEANVRSLVT 360

Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
           RGKLT+DKA+ AL MLKG LDYS+FKDVDMVIEAVIESVPLKQKIFSE+EK CPPHCILA
Sbjct: 361 RGKLTRDKADKALSMLKGALDYSDFKDVDMVIEAVIESVPLKQKIFSEIEKICPPHCILA 420

Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
           TNTSTIDLN+VGEKTSSQDRIIGAHFFSPAH+MPLLEIVRTE+TSAQ ILDLMTVGK IK
Sbjct: 421 TNTSTIDLNLVGEKTSSQDRIIGAHFFSPAHIMPLLEIVRTEKTSAQAILDLMTVGKTIK 480

Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
           KVPVVVGNCTGFAVNRAFFPY+QSA +LV LGVDVFRID  I SFGLP+GP+QL DL+GY
Sbjct: 481 KVPVVVGNCTGFAVNRAFFPYTQSALILVHLGVDVFRIDKLISSFGLPMGPYQLQDLSGY 540

Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 600
           GVA A  KEF  AFPDR+FQSPL+ LL+KSGRNGK NGKG Y YEKGSKP+PDPSVLPII
Sbjct: 541 GVALAVEKEFANAFPDRTFQSPLIHLLVKSGRNGKTNGKGYYIYEKGSKPRPDPSVLPII 600

Query: 601 EECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMS 660
           EE RRL+NIMP GK PI++T+KEIVEM+LFPVVNE+CRVL+EG+VVRASDLD ASVLGMS
Sbjct: 601 EESRRLANIMPNGK-PINITDKEIVEMVLFPVVNEACRVLDEGVVVRASDLDTASVLGMS 659

Query: 661 FPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPL 711
           FPSYRGGIVFWAD VG  +VY SLKKWSQ +G+F+KPS+FLEERAT GIPL
Sbjct: 660 FPSYRGGIVFWADLVGPKHVYDSLKKWSQRFGDFYKPSKFLEERATGGIPL 710

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445200|ref|XP_002284283.1| PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 [Vitis vinifera] gi|297738804|emb|CBI28049.3| unnamed protein product [Vitis vinifera]

 Score = 1187 bits (3072), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 576/725 (79%), Positives = 651/725 (89%), Gaps = 1/725 (0%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           M+   VTMEVGNDGVA+IT+ NPPVNALA+ I+AGLK+K+ EA  R+DVKAIV+TG GGR
Sbjct: 1   MSKAEVTMEVGNDGVAVITMSNPPVNALALAIIAGLKEKYAEAMRRNDVKAIVVTGKGGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDINVFQKVH   D+S +PD S++L+VN +ED KKP VAAVEGLALGGGLE+AM C
Sbjct: 61  FSGGFDINVFQKVHKTADISHLPDASIDLLVNTVEDAKKPSVAAVEGLALGGGLEVAMAC 120

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
           HARIAAPKTQLGLPEL+LGV+PGFGGTQRLPRLVGLSKAIEMM LSKSI+SEEG+KLGL+
Sbjct: 121 HARIAAPKTQLGLPELSLGVMPGFGGTQRLPRLVGLSKAIEMMRLSKSISSEEGYKLGLV 180

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
           DA+V+SEELLKVSR WALDI  +RKPW+RSLH+T+KLGS+SEA ++LK++R QA+KT P+
Sbjct: 181 DAIVSSEELLKVSRRWALDIVDKRKPWVRSLHQTEKLGSVSEALDILKISRQQARKTVPH 240

Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
           +PQHQACLDVIEEGIVHGGYSG+LKE KVF +LV+ DT++GL+HVFFAQRATSKVPNVTD
Sbjct: 241 LPQHQACLDVIEEGIVHGGYSGLLKETKVFNKLVLSDTAKGLIHVFFAQRATSKVPNVTD 300

Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
           IGLKPR V+KVAVIGGGLMGSGIATA I +NIYVVLKEVNSEYLLKGIKTIEANVRGLVT
Sbjct: 301 IGLKPRNVKKVAVIGGGLMGSGIATALITSNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360

Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
           +GKLTQDKA  AL MLKGVLDYSEFKD+DMVIEAVIE++ LKQKIFSE+EK C PHCILA
Sbjct: 361 KGKLTQDKARKALSMLKGVLDYSEFKDIDMVIEAVIENISLKQKIFSEIEKICSPHCILA 420

Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
           TNTSTIDLN+VGEKTSSQDRIIGAHFFSPAHVMPLLE+VRTE+TSAQVILDLMTVGK IK
Sbjct: 421 TNTSTIDLNLVGEKTSSQDRIIGAHFFSPAHVMPLLEVVRTEKTSAQVILDLMTVGKAIK 480

Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
           K+PVVVG+CTGFAVNR FFPY+Q A  LV+LGVD FRID  I +FGLP+GPFQL DL+GY
Sbjct: 481 KIPVVVGSCTGFAVNRTFFPYAQGAHFLVNLGVDPFRIDWVISNFGLPMGPFQLQDLSGY 540

Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 600
           GVA A  KEF  AF  R+F+SPLV+LLLK+GRNGK NGKG Y YEKGSKP+PDPSVLPII
Sbjct: 541 GVAVAVGKEFATAFQGRTFESPLVNLLLKNGRNGKQNGKGYYIYEKGSKPRPDPSVLPII 600

Query: 601 EECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMS 660
           EE RRL+NIMPGGK PISV  +EI+EMILFPVVNE+CRVL+EG+VVRASDLD  SVLGMS
Sbjct: 601 EESRRLANIMPGGK-PISVANQEILEMILFPVVNEACRVLDEGVVVRASDLDITSVLGMS 659

Query: 661 FPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSST 720
           FPSYRGGIVFWAD VG  Y+YT LKKWS +YG FFKPS +LE+RATKGIPLSAP S+S  
Sbjct: 660 FPSYRGGIVFWADEVGPYYIYTCLKKWSAMYGTFFKPSSYLEQRATKGIPLSAPASASPA 719

Query: 721 SRARL 725
           S +RL
Sbjct: 720 SNSRL 724

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546439|ref|XP_002514279.1| 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis] gi|223546735|gb|EEF48233.1| 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]

 Score = 1184 bits (3063), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 582/725 (80%), Positives = 651/725 (89%), Gaps = 1/725 (0%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           MA P VTMEVGNDGVA+I++ NPPVNALA+PI+ GLK+KF EA  R DV+AIVLTG  GR
Sbjct: 1   MAKPHVTMEVGNDGVAVISMSNPPVNALAVPIIMGLKEKFTEAARRKDVQAIVLTGKNGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDI+V QKVH  GD S++PDVSV+LVVN IEDCKKP+VAAVEGLALGGGLELAMGC
Sbjct: 61  FSGGFDISVMQKVHQTGDASILPDVSVDLVVNAIEDCKKPVVAAVEGLALGGGLELAMGC 120

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
           HARI APKTQLGLPEL+LG+IPGFGGTQRLPRLVGL KAI+MML SK I SEEG KLGL+
Sbjct: 121 HARIVAPKTQLGLPELSLGIIPGFGGTQRLPRLVGLPKAIQMMLTSKPIMSEEGKKLGLV 180

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
           D +V+S+ELLKVSR WALDI  RRKPW+RSLH TDKLGSLSEA E+LK AR QAKKTAPN
Sbjct: 181 DVIVSSQELLKVSRQWALDIKERRKPWMRSLHMTDKLGSLSEALELLKAARQQAKKTAPN 240

Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
           MPQHQACLDVIE+G+VHGGYSGVLKEAKVFKELV+ DT++ L+HVFFAQR TSKVPNV+D
Sbjct: 241 MPQHQACLDVIEDGVVHGGYSGVLKEAKVFKELVISDTAKSLIHVFFAQRTTSKVPNVSD 300

Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
           IGLKPR ++KVAVIGGGLMGSGI TA I + IYVVLKE+NSEYLLKGIK +EANVRGLVT
Sbjct: 301 IGLKPRQIKKVAVIGGGLMGSGIITALITSGIYVVLKEINSEYLLKGIKMVEANVRGLVT 360

Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
           RGKL+ DKA+ AL MLKGVLDYS+F+DVDMVIEAVIES+PLKQKIFSE+EKACPPHCILA
Sbjct: 361 RGKLSPDKADKALSMLKGVLDYSDFRDVDMVIEAVIESIPLKQKIFSEIEKACPPHCILA 420

Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
           TNTSTIDLN+VG+KTS+QD IIGAHFFSPAH+MPLLEIVRT++TS Q ILDLMTVGK IK
Sbjct: 421 TNTSTIDLNLVGKKTSAQDCIIGAHFFSPAHIMPLLEIVRTDKTSPQAILDLMTVGKSIK 480

Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
           KV VVVGNCTGFAVNR FFPY+Q A LLV+LGVDVFRID  I +FGLP+GP QL DLAGY
Sbjct: 481 KVSVVVGNCTGFAVNRTFFPYAQGAHLLVNLGVDVFRIDRVICNFGLPMGPLQLQDLAGY 540

Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 600
           GVA A  KEF  AFPDR+F+SPLVDLL+KSGRNGK NGKG Y YEKGSKPKPDPSV+PII
Sbjct: 541 GVAVAVGKEFATAFPDRTFKSPLVDLLIKSGRNGKNNGKGYYIYEKGSKPKPDPSVIPII 600

Query: 601 EECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMS 660
           +E +RL+NIMP GK PIS++++EIVEMI FP+VNE+CRVLEEG+VVRASDLD ASVLGMS
Sbjct: 601 QESQRLTNIMPNGK-PISISDQEIVEMIFFPIVNEACRVLEEGVVVRASDLDIASVLGMS 659

Query: 661 FPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSST 720
           FPSYRGGIVFWAD VG  ++YTSLKKWS LYGNF+KPSRFLEERA KG+PLSAPVSSS  
Sbjct: 660 FPSYRGGIVFWADTVGPKHIYTSLKKWSLLYGNFYKPSRFLEERALKGMPLSAPVSSSPG 719

Query: 721 SRARL 725
           SR+R+
Sbjct: 720 SRSRM 724

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315419009|gb|ADU15551.1| MFP [Gossypium hirsutum]

 Score = 1182 bits (3057), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 588/726 (80%), Positives = 657/726 (90%), Gaps = 6/726 (0%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           M+  +VTMEVGNDGVA+IT+ NPPVNALAIPI+ GLK+KF EAT RDDVKAIVLTG GGR
Sbjct: 1   MSQSKVTMEVGNDGVAVITISNPPVNALAIPIIDGLKEKFAEATRRDDVKAIVLTGKGGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDINVF KVHG GDVS+MPDVSV+LV N +EDCKKPIVAAVEGLALGGGLE AMGC
Sbjct: 61  FSGGFDINVFTKVHGTGDVSIMPDVSVDLVTNAVEDCKKPIVAAVEGLALGGGLEFAMGC 120

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
           HARIAAP+TQLGLPEL+LGVIPGFGGTQRLPRLVGLSKAIEMML SK I SEEG KLGLI
Sbjct: 121 HARIAAPRTQLGLPELSLGVIPGFGGTQRLPRLVGLSKAIEMMLSSKPIMSEEGKKLGLI 180

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
           DA+V S+ELLKVS  WALD+A RRKPW+RSLHRTDK+GSLSEAREVL++ARLQAKKTAPN
Sbjct: 181 DALVPSKELLKVSCAWALDMAERRKPWLRSLHRTDKIGSLSEAREVLRMARLQAKKTAPN 240

Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
           +PQHQ CLDVIEEGIVHGGYSGVLKEAKVFKE+V+ DTSRGLVHVF AQRATSKVPNVTD
Sbjct: 241 LPQHQVCLDVIEEGIVHGGYSGVLKEAKVFKEIVLSDTSRGLVHVFLAQRATSKVPNVTD 300

Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
           +GLKPR V+KVA+IGGGLMGSGIATA I+NNI+VVLKEVNSEYLLKGIKT+EANVRGL  
Sbjct: 301 VGLKPRQVKKVAIIGGGLMGSGIATALIVNNIFVVLKEVNSEYLLKGIKTVEANVRGLAN 360

Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
           RGK+T+DKA  AL MLKGVLDYSEFKDVDMVIEAV+E+V LKQKIFSE+EKACPPHCILA
Sbjct: 361 RGKMTKDKAEKALSMLKGVLDYSEFKDVDMVIEAVVENVALKQKIFSEIEKACPPHCILA 420

Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
           TNTSTIDLN++GEK +SQDR++GAHFFSPAH+MPLLE VRT++ S Q+ILDLMTVGK+IK
Sbjct: 421 TNTSTIDLNLIGEKMNSQDRLVGAHFFSPAHLMPLLETVRTQKASPQIILDLMTVGKVIK 480

Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIRSFGLPIGPFQLLDLAG 539
           KVPVVVGNCTGFAVNR FFPY+Q   LLVSLGV D +RID  I +FG P+GPFQL DLAG
Sbjct: 481 KVPVVVGNCTGFAVNRTFFPYTQGPHLLVSLGVDDAYRIDRVICNFGFPLGPFQLQDLAG 540

Query: 540 YGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPI 599
           YGVA A  +E+ KAF DR F+SPL++LL K GRNGK NGKG Y YEKGSKPKPDPSVL I
Sbjct: 541 YGVAFAVGQEYAKAFSDRIFKSPLLELLAKDGRNGKNNGKGYYIYEKGSKPKPDPSVLSI 600

Query: 600 IEECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGM 659
           IEE RRL+NIMPGGK PISVT++E++EMILFPVVNE+CRVL+EG+VVRASDLD ASVLGM
Sbjct: 601 IEESRRLTNIMPGGK-PISVTDREVLEMILFPVVNEACRVLDEGVVVRASDLDVASVLGM 659

Query: 660 SFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSS 719
           SFPSYRGGIVFWAD VGAN+VY +LKKWS   GN +KPS+FLEERA KGIPLSAP +SS+
Sbjct: 660 SFPSYRGGIVFWADMVGANHVYRNLKKWS---GN-YKPSKFLEERAMKGIPLSAPATSSA 715

Query: 720 TSRARL 725
           ++++RL
Sbjct: 716 STKSRL 721

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|406365505|gb|AFS41246.1| cinnamoyl-CoA hydratase-dehydrogenase [Petunia x hybrida]

 Score = 1170 bits (3027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 576/709 (81%), Positives = 638/709 (89%), Gaps = 1/709 (0%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           MA  +VTMEVG DGVA+IT+ NPPVNALAIPI+  LK+K+ EAT R+DVKAIVLTGNGGR
Sbjct: 1   MAQVKVTMEVGTDGVAVITIFNPPVNALAIPIINALKEKWTEATIRNDVKAIVLTGNGGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDINVFQKVHG GD+S MPDVSV+LVVN +EDCKKP VAA+EGLALGGGLELAMGC
Sbjct: 61  FSGGFDINVFQKVHGTGDISQMPDVSVDLVVNTMEDCKKPAVAAIEGLALGGGLELAMGC 120

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
           HARIAAP+ QLGLPEL+LGV+PGFGGTQRLPRL+GLSKA+EMM+ SK I SEEG KLGLI
Sbjct: 121 HARIAAPRAQLGLPELSLGVMPGFGGTQRLPRLIGLSKAVEMMMTSKPIMSEEGKKLGLI 180

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
           DA+V S ELLKVSR WALDIA RRKPW+RSLH+TDK+GSLSEAREVLK+AR Q K+TA N
Sbjct: 181 DAIVPSSELLKVSRQWALDIAERRKPWMRSLHKTDKIGSLSEAREVLKVARQQVKQTAKN 240

Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
           MPQH AC+DVIEEGI+HGGY+GVLKEAKVFK+LV+ +TS+GLVHVFFAQRATSKVPNVTD
Sbjct: 241 MPQHVACIDVIEEGIIHGGYAGVLKEAKVFKDLVLSETSKGLVHVFFAQRATSKVPNVTD 300

Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
           IGLKPR V+KVAVIGGGLMGSGIATA  L+N +VVLKE+NSEYL KG+K IEANVRGLV 
Sbjct: 301 IGLKPRTVKKVAVIGGGLMGSGIATALALSNTFVVLKEINSEYLQKGMKAIEANVRGLVA 360

Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
           R KL QDKA+ AL M+KG LDYS+FKDVDMVIEAVIESVPLKQKIFSE+EK CPPHCILA
Sbjct: 361 RKKLPQDKADKALSMVKGALDYSDFKDVDMVIEAVIESVPLKQKIFSEIEKVCPPHCILA 420

Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
           +NTSTIDLNI+GE T S+DRIIGAHFFSPAH+MPLLEIVRTE+TS Q ILDLM VGK IK
Sbjct: 421 SNTSTIDLNIIGENTRSKDRIIGAHFFSPAHIMPLLEIVRTEKTSTQAILDLMAVGKAIK 480

Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
           KVPVVVGNCTGFAVNR FFPYSQ A +LV+LGVD +RID+ I SFGLP+GP QL DL GY
Sbjct: 481 KVPVVVGNCTGFAVNRTFFPYSQGAHILVNLGVDAYRIDAQITSFGLPMGPLQLQDLTGY 540

Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 600
           GVA A  KEF  AF DR+F+SPL+DLL+KSGRNGK NGKG Y YEKGSKP+PD SVLPII
Sbjct: 541 GVAVAVGKEFGSAFSDRTFKSPLIDLLIKSGRNGKNNGKGFYIYEKGSKPRPDLSVLPII 600

Query: 601 EECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMS 660
           EE RRL+NIMPGGK PISVT++EIVEMILFPVVNE+CRVL+EGIVVRASDLD ASVLGMS
Sbjct: 601 EESRRLTNIMPGGK-PISVTDQEIVEMILFPVVNEACRVLDEGIVVRASDLDVASVLGMS 659

Query: 661 FPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGI 709
           FPSYRGGIVFWAD VGA ++Y SL KWS+LYGNFFKPSRFLEERATKGI
Sbjct: 660 FPSYRGGIVFWADTVGAGHIYKSLTKWSELYGNFFKPSRFLEERATKGI 708

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520511|ref|XP_003528905.1| PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein AIM1-like [Glycine max]

 Score = 1160 bits (3000), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 574/725 (79%), Positives = 646/725 (89%), Gaps = 1/725 (0%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           MA P+V  EVG DGVA+IT+ NPPVNALAIPI+ GLK++F+EA  R+DVKAIVLTG GGR
Sbjct: 1   MALPKVDFEVGTDGVAVITMCNPPVNALAIPIIMGLKNRFDEAARRNDVKAIVLTGKGGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDI+V QKVH  GD S +PDVSVELVVN IED KKP+VAAVEGLALGGGLELAMGC
Sbjct: 61  FSGGFDISVMQKVHQTGDSSHLPDVSVELVVNSIEDSKKPVVAAVEGLALGGGLELAMGC 120

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
           HAR+AAP+ QLGLPELTLG+IPGFGGTQRLPRL+GLSKA+EMML SK ITSEEG K GLI
Sbjct: 121 HARVAAPRAQLGLPELTLGIIPGFGGTQRLPRLIGLSKAVEMMLTSKPITSEEGRKFGLI 180

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
           DA+V+SEELLK SRLWAL+I  RRKPWIRSLHRTDK+GSLSEAR VLK AR Q KKTAP+
Sbjct: 181 DAIVSSEELLKASRLWALEIGERRKPWIRSLHRTDKIGSLSEARAVLKTARQQVKKTAPH 240

Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
           +PQ QAC+DVIE GIVHGGYSGVLKEA+VFK+LV+ DTS+GL++VFFAQRA SKVP VTD
Sbjct: 241 LPQQQACVDVIEHGIVHGGYSGVLKEAEVFKQLVISDTSKGLINVFFAQRAISKVPGVTD 300

Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
           IGLKPR V+K AVIGGGLMGSGIATA IL NI V+LKE+NSE+LLKGIKTIEANV GLV 
Sbjct: 301 IGLKPRNVKKAAVIGGGLMGSGIATALILGNIRVILKEINSEFLLKGIKTIEANVNGLVR 360

Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
           RGKLT+ KA+ AL +LKGVLDYSEFKDVD+VIEAVIE++ LKQ IF +LEK CPPHCILA
Sbjct: 361 RGKLTKQKADAALSLLKGVLDYSEFKDVDLVIEAVIENISLKQTIFGDLEKICPPHCILA 420

Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
           +NTSTIDL++VG+ TSSQDRI GAHFFSPAH+MPLLEI+RT++TSAQVI+DL+TVGKIIK
Sbjct: 421 SNTSTIDLDVVGKTTSSQDRIAGAHFFSPAHIMPLLEIIRTDKTSAQVIVDLITVGKIIK 480

Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
           K PVVVGNCTGFAVN+ FFPYSQ A LLV+LGVDVFRID  I +FG PIGPFQL DLAGY
Sbjct: 481 KAPVVVGNCTGFAVNKTFFPYSQGAHLLVNLGVDVFRIDRLICNFGFPIGPFQLQDLAGY 540

Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 600
           GVA ATSK F  AF DR F+SPL+DLL+KSGRNGK NGKG Y YEKG KPKPDPS+LPII
Sbjct: 541 GVAVATSKVFADAFSDRIFKSPLLDLLIKSGRNGKNNGKGYYIYEKGGKPKPDPSILPII 600

Query: 601 EECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMS 660
           EE RRL NIMP GK PIS+T++EIVEMILFPVVNE+CRVLE+G+V+RASDLD ASVLGMS
Sbjct: 601 EESRRLCNIMPNGK-PISITDQEIVEMILFPVVNEACRVLEDGVVIRASDLDIASVLGMS 659

Query: 661 FPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSST 720
           FP+YRGGIVFWAD VGAN+++TSLKKW+QLYGNF+KPSR+LEERA KGIPLSAP SS+  
Sbjct: 660 FPNYRGGIVFWADLVGANHIFTSLKKWAQLYGNFYKPSRYLEERALKGIPLSAPASSTPK 719

Query: 721 SRARL 725
           S ARL
Sbjct: 720 SMARL 724

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357500631|ref|XP_003620604.1| Peroxisomal fatty acid beta-oxidation multifunctional protein [Medicago truncatula] gi|355495619|gb|AES76822.1| Peroxisomal fatty acid beta-oxidation multifunctional protein [Medicago truncatula]

 Score = 1157 bits (2992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 574/725 (79%), Positives = 644/725 (88%), Gaps = 3/725 (0%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           MA+ +V  EVGNDGVA+IT+ NPPVNALAIPI+ GLK+KFEEA  R+DVKAIVLTG GGR
Sbjct: 1   MASVKVDFEVGNDGVAVITMCNPPVNALAIPIIRGLKNKFEEAARRNDVKAIVLTGKGGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDI+V QKVH  GD++L+PDVSVELVVN IED KKP+VAAVEGLALGGGLELAMGC
Sbjct: 61  FSGGFDISVMQKVHQTGDITLVPDVSVELVVNSIEDSKKPVVAAVEGLALGGGLELAMGC 120

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
           HAR+AAPK QLGLPELTLG+IPGFGGTQRLPRLVG SKA+EMML SK IT+EEG KLGLI
Sbjct: 121 HARVAAPKAQLGLPELTLGIIPGFGGTQRLPRLVGTSKAVEMMLTSKPITAEEGQKLGLI 180

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
           DA+V+  ELLK+SR WAL+IA +R+PWIRSLH TDKLGS  +AREVL+ AR   KKTAP+
Sbjct: 181 DAIVSPAELLKLSRQWALEIAEQRRPWIRSLHITDKLGS--DAREVLRTARQHVKKTAPH 238

Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
           +PQ QAC+DVIE GI+HGGYSGVL+EA+VFK+LV+ +T++GL+HVFFAQR  SK+P VTD
Sbjct: 239 LPQQQACIDVIEHGILHGGYSGVLREAEVFKKLVLSETAKGLIHVFFAQRTISKIPGVTD 298

Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
           IGLKPR VRK AVIGGGLMGSGIATA IL NI V+LKEVNSEYL KGIKTIEANVRGLVT
Sbjct: 299 IGLKPRNVRKAAVIGGGLMGSGIATALILGNIRVILKEVNSEYLQKGIKTIEANVRGLVT 358

Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
           R KLTQ KA  AL +LKGVLDY+EFKDVDMVIEAVIE V LKQ IFS+LEK CPPHCILA
Sbjct: 359 RKKLTQQKAEGALSLLKGVLDYAEFKDVDMVIEAVIEKVSLKQDIFSDLEKICPPHCILA 418

Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
           +NTSTIDLNI+GEK SSQDR+IGAHFFSPAH+MPLLEIVRT +TSAQVILDL+TVGKIIK
Sbjct: 419 SNTSTIDLNIIGEKISSQDRVIGAHFFSPAHIMPLLEIVRTNKTSAQVILDLVTVGKIIK 478

Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
           K PVVVGNCTGFAVNR FFPY+Q A  L +LGVDVFRID  I +FGLP+GPFQL DL+GY
Sbjct: 479 KSPVVVGNCTGFAVNRTFFPYAQGAHFLANLGVDVFRIDRLISNFGLPMGPFQLQDLSGY 538

Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 600
           GVA A  KEF  +F  R+F +PL+DLL+KSGRNGK NGKG Y YEKGSKPKPDPSVLPI+
Sbjct: 539 GVAVAVGKEFAGSFAGRTFPTPLLDLLIKSGRNGKNNGKGYYIYEKGSKPKPDPSVLPIV 598

Query: 601 EECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMS 660
           EE RRLSNIMP GK PIS+T++EIVEMILFPVVNE+CRVLEEGIV+RASDLD ASVLGMS
Sbjct: 599 EESRRLSNIMPNGK-PISITDQEIVEMILFPVVNEACRVLEEGIVIRASDLDIASVLGMS 657

Query: 661 FPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSST 720
           FPSYRGGIVFWAD VGA ++Y+SLKKWSQLYGNF+KPSR+LEERATKGIPLSAP SS+ T
Sbjct: 658 FPSYRGGIVFWADLVGAKHIYSSLKKWSQLYGNFYKPSRYLEERATKGIPLSAPASSNPT 717

Query: 721 SRARL 725
           S+ARL
Sbjct: 718 SKARL 722

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443155|ref|XP_004139346.1| PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein AIM1-like [Cucumis sativus]

 Score = 1145 bits (2961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/725 (75%), Positives = 632/725 (87%), Gaps = 1/725 (0%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           MA P VTMEVGNDGVA+IT+ NPPVNALA  +   LK KFEEA  R+DVKA+VLTG GGR
Sbjct: 1   MAEPSVTMEVGNDGVALITMSNPPVNALARSMFPALKSKFEEAMRRNDVKAVVLTGKGGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDINVF+ +H  GD SL+PDVSV++ VN +ED KKPIVAA+EGLALGGGLE+A+  
Sbjct: 61  FSGGFDINVFEMIHKTGDTSLLPDVSVDIAVNTMEDAKKPIVAAIEGLALGGGLEMALAS 120

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
           HARIA PK QLGLPEL+LGVIPGFGGTQRLPRL+GL KAIEMMLLSK+ITSEEG KLGLI
Sbjct: 121 HARIAVPKVQLGLPELSLGVIPGFGGTQRLPRLIGLPKAIEMMLLSKTITSEEGEKLGLI 180

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
           DAVV+  EL+KV+R WALDIA RRKPWIR+LHRTD++GSL+EAR VLK AR QAKK APN
Sbjct: 181 DAVVSPNELMKVARKWALDIAERRKPWIRTLHRTDRIGSLAEARSVLKSAREQAKKIAPN 240

Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
            PQ  AC+DVIE+GI+HGGYSGVLKE KVF+ELV  DT++GLVHVFF+QR  SKVPNVTD
Sbjct: 241 TPQQLACIDVIEDGIIHGGYSGVLKEDKVFRELVATDTAKGLVHVFFSQRLISKVPNVTD 300

Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
            GLKPR V+KVA+IGGGLMGSGIATA IL+NI+VV+KE+N EYL KGIKTIEAN+RGLV 
Sbjct: 301 RGLKPRNVKKVAIIGGGLMGSGIATAFILSNIHVVVKEINPEYLQKGIKTIEANLRGLVV 360

Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
           +GKLTQDKAN AL +LKG LDYS+FKDVDMVIEA +E+VPLKQKIFSE+EK CP HCILA
Sbjct: 361 KGKLTQDKANKALLILKGSLDYSDFKDVDMVIEAAVENVPLKQKIFSEIEKICPAHCILA 420

Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
           TNTSTIDLN+VGEKT S DRIIGAHFFSPAHVMPLLEIVRTE+TS QVILDLMTVGKIIK
Sbjct: 421 TNTSTIDLNLVGEKTRSMDRIIGAHFFSPAHVMPLLEIVRTEKTSPQVILDLMTVGKIIK 480

Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
           KVPVVVGNCTGFAVNR FFPY Q+A+LLV LGVD+FRID  I +FGLP+GPFQL DL+GY
Sbjct: 481 KVPVVVGNCTGFAVNRTFFPYVQAAQLLVHLGVDLFRIDRVITNFGLPLGPFQLQDLSGY 540

Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 600
           GVA A  KEF  +FPDR   SPLVDL+ K+GR+GK NGKG Y YEKGS+PKPDPS+ PI+
Sbjct: 541 GVATAVGKEFSASFPDRVLFSPLVDLMRKNGRDGKNNGKGYYIYEKGSRPKPDPSIAPIL 600

Query: 601 EECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMS 660
           EE RR++N+MP GK PI++++++I+EM+LFPVVNE CRV+EEGIVVR SDL+ A+VLGMS
Sbjct: 601 EETRRIANLMPSGK-PIAISDQQILEMVLFPVVNEGCRVVEEGIVVRPSDLNVATVLGMS 659

Query: 661 FPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSST 720
           FPSYRGG++FW D VG  +VY SLKKWS+ YG+FFKPS++LEERA KGIPLS  +S ++ 
Sbjct: 660 FPSYRGGLLFWGDLVGPKHVYASLKKWSEQYGDFFKPSKYLEERAAKGIPLSEAISENAA 719

Query: 721 SRARL 725
           SR++L
Sbjct: 720 SRSKL 724

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531273|ref|XP_003534202.1| PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein AIM1-like [Glycine max]

 Score = 1143 bits (2957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 568/725 (78%), Positives = 645/725 (88%), Gaps = 1/725 (0%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           MA P+V  EVG DGVA+IT+ NPPVNALAIPI+ GLK++F+EA  R+DVKAIVLTG GGR
Sbjct: 1   MALPKVDFEVGADGVAVITMCNPPVNALAIPIIMGLKNRFDEAARRNDVKAIVLTGKGGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDI+V QKVH  GD S +PDVSVELVVN IED KKP+VAAV GLALGGGLELAMGC
Sbjct: 61  FSGGFDISVMQKVHRTGDSSHLPDVSVELVVNSIEDSKKPVVAAVAGLALGGGLELAMGC 120

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
           HAR+AAP+ QLGLPELTLG+IPGFGGTQRLPRL+GLSKA+EMML SK ITSEEG KLGLI
Sbjct: 121 HARVAAPRAQLGLPELTLGIIPGFGGTQRLPRLIGLSKAVEMMLTSKPITSEEGRKLGLI 180

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
           DA+V+SEELL  SRLWAL+I  R KPW+RSLHRTDK+GSLSEAREVL+ AR Q KKT P+
Sbjct: 181 DAIVSSEELLNASRLWALEIGERCKPWVRSLHRTDKIGSLSEAREVLRTARQQVKKTVPH 240

Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
           +PQ  AC+DVIE GIVHGGYSGVLKEA+VFK+LV+ DT++GL++VFF+QRA SKVP VTD
Sbjct: 241 LPQQLACVDVIEHGIVHGGYSGVLKEAEVFKQLVVSDTAKGLINVFFSQRAISKVPGVTD 300

Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
           IGLKPR V+K AVIGGGLMGSGIATA IL NI+V+LKE+N E+LLKGIKTIEANV GLV 
Sbjct: 301 IGLKPRNVKKAAVIGGGLMGSGIATALILGNIHVILKEINPEFLLKGIKTIEANVNGLVR 360

Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
           RGKLT+ KA+ AL +L+GVLDYSEFKDVD+VIEAVIE++ LKQ IFS+LEK CPPHCILA
Sbjct: 361 RGKLTKQKADAALSLLRGVLDYSEFKDVDLVIEAVIENISLKQTIFSDLEKICPPHCILA 420

Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
           +NTSTIDL++VG+ TSSQ+RI GAHFFSPAH+MPLLEI+RT++TSAQVILDL+TVGKIIK
Sbjct: 421 SNTSTIDLDVVGKTTSSQNRIAGAHFFSPAHIMPLLEIIRTDKTSAQVILDLITVGKIIK 480

Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
           K PVVVGNCTGFAVN+ FFPYSQ A LLV+LGVDVFRID+ IR+FG PIGPFQL DLAGY
Sbjct: 481 KTPVVVGNCTGFAVNKTFFPYSQGAHLLVNLGVDVFRIDTLIRNFGFPIGPFQLQDLAGY 540

Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 600
           GVA ATSK F  AF DR F+SPL+DLL+KSGRNGK NGKG Y YEK  KPKPDPS+LPII
Sbjct: 541 GVAVATSKVFADAFSDRIFKSPLLDLLIKSGRNGKNNGKGYYIYEKAGKPKPDPSILPII 600

Query: 601 EECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMS 660
           EE RRL NIMP GK PISVT++EIVEMILFPVVNE+CRVLE+G+V+RASDLD ASVLGMS
Sbjct: 601 EESRRLCNIMPNGK-PISVTDQEIVEMILFPVVNEACRVLEDGVVIRASDLDIASVLGMS 659

Query: 661 FPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSST 720
           FP+YRGGIVFWAD VGAN++YTSLKKW+QLYGNF+KPSR+LEERA KGIPLSAP SS+  
Sbjct: 660 FPNYRGGIVFWADLVGANHIYTSLKKWAQLYGNFYKPSRYLEERALKGIPLSAPASSTPK 719

Query: 721 SRARL 725
           S ARL
Sbjct: 720 SMARL 724

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515444|ref|XP_004164759.1| PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein AIM1-like [Cucumis sativus]

 Score = 1130 bits (2922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/725 (74%), Positives = 627/725 (86%), Gaps = 6/725 (0%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           MA P VTMEVGNDGVA+IT+ NPPVNALA  +   LK KFEEA  R+DVKA+VLTG GGR
Sbjct: 1   MAEPSVTMEVGNDGVALITMSNPPVNALARSMFPALKSKFEEAMRRNDVKAVVLTGKGGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDINVF+ +H  GD SL+PDVSV++ VN +ED KKPIVAA+EGLALGGGLE+A+  
Sbjct: 61  FSGGFDINVFEMIHKTGDTSLLPDVSVDIAVNTMEDAKKPIVAAIEGLALGGGLEMALAS 120

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
           HARIA PK QLGLPEL+LGVIPGFGGTQRLPRL+GL KAIEMMLLSK+ITSEEG KLGLI
Sbjct: 121 HARIAVPKVQLGLPELSLGVIPGFGGTQRLPRLIGLPKAIEMMLLSKTITSEEGEKLGLI 180

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
           DAVV+  EL+KV+R WALDIA RRKPWIR+LHRTD++GSL+EAR VLK AR QAKK APN
Sbjct: 181 DAVVSPNELMKVARKWALDIAERRKPWIRTLHRTDRIGSLAEARSVLKSAREQAKKIAPN 240

Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
            PQ  AC+DVIE+GI+HGGYSGVLKE KVF+ELV  DT++GLVHVFF       VPNVTD
Sbjct: 241 TPQQLACIDVIEDGIIHGGYSGVLKEDKVFRELVATDTAKGLVHVFFPS-----VPNVTD 295

Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
            GLKPR V+KVA+IGGGLMGSGIATA IL+NI+VV+KE+N EYL KGIKTIEAN+RGLV 
Sbjct: 296 RGLKPRNVKKVAIIGGGLMGSGIATAFILSNIHVVVKEINPEYLQKGIKTIEANLRGLVV 355

Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
           +GKLTQDKAN AL +LKG LDYS+FKDVDMVIEA +E+VPLKQKIFSE+EK CP HCILA
Sbjct: 356 KGKLTQDKANKALLILKGSLDYSDFKDVDMVIEAAVENVPLKQKIFSEIEKICPAHCILA 415

Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
           TNTSTIDLN+VGEKT S DRIIGAHFFSPAHVMPLLEIVRTE+TS QVILDLMTVGKIIK
Sbjct: 416 TNTSTIDLNLVGEKTRSMDRIIGAHFFSPAHVMPLLEIVRTEKTSPQVILDLMTVGKIIK 475

Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
           KVPVVVGNCTGFAVNR FFPY Q+A+LLV LGVD+FRID  I +FGLP+GPFQL DL+GY
Sbjct: 476 KVPVVVGNCTGFAVNRTFFPYVQAAQLLVHLGVDLFRIDRVITNFGLPLGPFQLQDLSGY 535

Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 600
           GVA A  KEF  +FPDR   SPLVDL+ K+GR+GK NGKG Y YEKGS+PKPDPS+ PI+
Sbjct: 536 GVATAVGKEFSASFPDRVLFSPLVDLMRKNGRDGKNNGKGYYIYEKGSRPKPDPSIAPIL 595

Query: 601 EECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMS 660
           EE RR++N+MP GK PI++++++I+EM+LFPVVNE CRV+EEGIVVR SDL+ A+VLGMS
Sbjct: 596 EETRRIANLMPSGK-PIAISDQQILEMVLFPVVNEGCRVVEEGIVVRPSDLNVATVLGMS 654

Query: 661 FPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSST 720
           FPSYRGG++FW D VG  +VY SLKKWS+ YG+FFKPS++LEERA KGIPLS  +S ++ 
Sbjct: 655 FPSYRGGLLFWGDLVGPKHVYASLKKWSEQYGDFFKPSKYLEERAAKGIPLSEAISENAA 714

Query: 721 SRARL 725
           SR++L
Sbjct: 715 SRSKL 719

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	725
TAIR|locus:2119891	721	AIM1 "ABNORMAL INFLORESCENCE M	0.969	0.975	0.715	1.7e-274
UNIPROTKB|Q8W1L6	726	MFP "Peroxisomal fatty acid be	0.973	0.972	0.669	5.8e-256
UNIPROTKB|Q39659	725	Q39659 "Glyoxysomal fatty acid	0.973	0.973	0.560	2.5e-216
UNIPROTKB|O49809	725	O49809 "Glyoxysomal fatty acid	0.966	0.966	0.561	8.9e-212
TAIR|locus:2077542	725	MFP2 "multifunctional protein	0.968	0.968	0.556	2.1e-210
TIGR_CMR|SPO_0772	698	SPO_0772 "enoyl-CoA hydratase/	0.924	0.959	0.333	5.5e-93
ZFIN|ZDB-GENE-031222-5	761	hadhaa "hydroxyacyl-Coenzyme A	0.782	0.745	0.316	6.2e-93
MGI|MGI:2135593	763	Hadha "hydroxyacyl-Coenzyme A	0.782	0.743	0.306	1.1e-91
ZFIN|ZDB-GENE-041111-204	763	hadhab "hydroxyacyl-Coenzyme A	0.780	0.741	0.302	1.9e-91
RGD|620512	763	Hadha "hydroxyacyl-CoA dehydro	0.783	0.744	0.307	2.4e-91

TAIR|locus:2119891 AIM1 "ABNORMAL INFLORESCENCE MERISTEM" [Arabidopsis thaliana (taxid:3702)]

 Score = 2639 (934.0 bits), Expect = 1.7e-274, P = 1.7e-274
 Identities = 504/704 (71%), Positives = 595/704 (84%)

Query:     6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
             VTMEVGNDGVA+IT+ NPPVN+LA PI++GLK+KF +A  R+DVKAIVL GN GRFSGGF
Sbjct:     7 VTMEVGNDGVAVITISNPPVNSLASPIISGLKEKFRDANQRNDVKAIVLIGNNGRFSGGF 66

Query:    66 DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
             DINVFQ+VH  GD+SLMP+VSVELV NL+ED +KP+                M CHAR+A
Sbjct:    67 DINVFQQVHKTGDLSLMPEVSVELVCNLMEDSRKPVVAAVEGLALGGGLELAMACHARVA 126

Query:   126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
             APK QLGLPELTLGVIPGFGGTQRLPRLVGL+KA +M+LLSKSI+SEEG KLGLIDA+V 
Sbjct:   127 APKAQLGLPELTLGVIPGFGGTQRLPRLVGLAKATDMILLSKSISSEEGHKLGLIDALVP 186

Query:   186 SEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 245
               ++L  SR WALDIA  RKP+++SLHRTDK+GSLSEAR +LK +R  AKK APNMPQH 
Sbjct:   187 PGDVLSTSRKWALDIAEGRKPFLQSLHRTDKIGSLSEARAILKNSRQLAKKIAPNMPQHH 246

Query:   246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKP 305
             AC++VIEEGI+HGGYSGVLKEA+VFK+LV+ DT++GLVHVFFAQRATSKVPNVTD+GLKP
Sbjct:   247 ACIEVIEEGIIHGGYSGVLKEAEVFKQLVLSDTAKGLVHVFFAQRATSKVPNVTDVGLKP 306

Query:   306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT 365
             R ++KVAVIGGGLMGSGIATA +L+NI VVLKE+NSE+L+KGIK++EAN++ LV+RGKLT
Sbjct:   307 RPIKKVAVIGGGLMGSGIATALLLSNIRVVLKEINSEFLMKGIKSVEANMKSLVSRGKLT 366

Query:   366 QDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425
             QDKA  AL + KGVLDY+EF DVDMVIEAVIE++ LKQ IF E+EK C PHCILA+NTST
Sbjct:   367 QDKAGKALSLFKGVLDYTEFNDVDMVIEAVIENIQLKQNIFKEIEKVCSPHCILASNTST 426

Query:   426 IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXX 485
             IDL+++GEKT+S+DRI+GAHFFSPAH+MPLLEIVR++ TSAQVILDLM            
Sbjct:   427 IDLDVIGEKTNSKDRIVGAHFFSPAHLMPLLEIVRSKNTSAQVILDLMAVGKAIKKVPVV 486

Query:   486 XXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAA 545
               NC GFAVNR FFPYSQ+A +L +LGVD+FRIDS I SFGLP+GPFQL DLAG+G+  A
Sbjct:   487 VGNCIGFAVNRTFFPYSQAAHMLANLGVDLFRIDSVITSFGLPLGPFQLGDLAGHGIGLA 546

Query:   546 TSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECRR 605
                 + K + DR F+SP+ +LLLKSGRNGK NG+G Y YEKGSKPKPDPSVL I+E+ R+
Sbjct:   547 VGPIYAKVYGDRMFRSPMTELLLKSGRNGKINGRGYYIYEKGSKPKPDPSVLSIVEKSRK 606

Query:   606 LSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYR 665
             L+NIMPGGK PISVT+KEIVEMILFPVVNE+CRVL+EG+V+RASDLD ASVLGMSFPSYR
Sbjct:   607 LTNIMPGGK-PISVTDKEIVEMILFPVVNEACRVLDEGVVIRASDLDIASVLGMSFPSYR 665

Query:   666 GGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGI 709
             GGIVFWAD VG  Y+Y  LKK S+ YG+FFKPSR+LEERA  G+
Sbjct:   666 GGIVFWADTVGPKYIYERLKKLSETYGSFFKPSRYLEERAMNGM 709

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IMP;IDA

GO:0006635 "fatty acid beta-oxidation" evidence=ISS

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0009908 "flower development" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IMP

GO:0005777 "peroxisome" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

UNIPROTKB|Q8W1L6 MFP "Peroxisomal fatty acid beta-oxidation multifunctional protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 2464 (872.4 bits), Expect = 5.8e-256, P = 5.8e-256
 Identities = 473/707 (66%), Positives = 570/707 (80%)

Query:     3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFS 62
             A RVTMEVG DGVA++T+ NPPVNAL   I+ GLK+K+ EA  RDDVKAIVLTG GG+F 
Sbjct:     4 AIRVTMEVGADGVAVVTICNPPVNALHPIIIQGLKEKYAEAMDRDDVKAIVLTGAGGKFC 63

Query:    63 GGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHA 122
             GGFDINVF +VH  G+VSLMPDVSVELV NL+E  KKP                 MGCHA
Sbjct:    64 GGFDINVFTEVHKTGNVSLMPDVSVELVSNLMEAGKKPSVAAIQGLALGGGLELTMGCHA 123

Query:   123 RIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDA 182
             RI+ P+ QLGLPELTLG+IPGFGGTQRLPRLVGL KAIEMML SK IT++EG + GL+DA
Sbjct:   124 RISTPEAQLGLPELTLGIIPGFGGTQRLPRLVGLPKAIEMMLQSKFITAKEGKEGGLVDA 183

Query:   183 VVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242
             + + +EL+K+SRLWAL+IA  RKPWIRSL RTD+LGSLSEAR VL  AR QAKK A N+P
Sbjct:   184 LCSPDELIKMSRLWALEIANYRKPWIRSLARTDRLGSLSEARSVLNSARQQAKKVAANLP 243

Query:   243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIG 302
             QHQACLDV+EEG++ GG++GVLKEAKVFKELV+  TS+ LVH FFAQR T+KVP VTD+ 
Sbjct:   244 QHQACLDVMEEGVLCGGHAGVLKEAKVFKELVLSPTSKALVHAFFAQRLTTKVPGVTDVQ 303

Query:   303 LKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRG 362
             LKPR +RKVAVIGGGLMGSGIATA +++N  VVLKEVN ++L +G K I AN+ GLV RG
Sbjct:   304 LKPRKIRKVAVIGGGLMGSGIATALLVSNTSVVLKEVNPQFLQRGQKMIAANLEGLVKRG 363

Query:   363 KLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN 422
              LT+DK N A+ +LKG LDYS+FKDVDMVIEAVIE +PLKQ IFS+LEK CPPHCILATN
Sbjct:   364 SLTKDKMNKAMSLLKGALDYSDFKDVDMVIEAVIEKIPLKQSIFSDLEKVCPPHCILATN 423

Query:   423 TSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXX 482
             TSTIDLN+VGEKT+SQDRIIGAHFFSPAH+MPLLEIVRTE+TS Q ILDL+T        
Sbjct:   424 TSTIDLNVVGEKTNSQDRIIGAHFFSPAHIMPLLEIVRTEKTSPQAILDLITVGKMIKKV 483

Query:   483 XXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGV 542
                  NCTGFAVNR FFPY+Q + LLVS+G+DVFRID  I SFG+P+GPFQL DLAGYGV
Sbjct:   484 PVVVGNCTGFAVNRTFFPYTQGSHLLVSIGIDVFRIDRVISSFGMPMGPFQLQDLAGYGV 543

Query:   543 AAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEE 602
             A A    +  AF  R+  S LVDL++++GR GK+NGKG Y YEKG KPKPDPSV  +I+E
Sbjct:   544 ALAVKDIYAAAFGTRNLDSNLVDLMVQNGRQGKSNGKGYYLYEKGGKPKPDPSVQVVIDE 603

Query:   603 CRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFP 662
              RR +  MPGGK P+++++++I+EMI FPVVNE+CRV++E +V+RASDLD AS+LGM FP
Sbjct:   604 YRRCAKTMPGGK-PVTLSDQDILEMIFFPVVNEACRVMDENVVIRASDLDIASILGMGFP 662

Query:   663 SYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGI 709
              +RGG+VFWAD +GA Y+++ L KW+++YG+FFKPS +LE+RA + +
Sbjct:   663 KFRGGLVFWADTIGAPYIHSKLSKWTEIYGDFFKPSSYLEDRAKRSL 709

GO:0003729 "mRNA binding" evidence=IDA

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=ISS

GO:0004300 "enoyl-CoA hydratase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=NAS

GO:0006635 "fatty acid beta-oxidation" evidence=IDA

GO:0008017 "microtubule binding" evidence=IDA

GO:0008692 "3-hydroxybutyryl-CoA epimerase activity" evidence=ISS

GO:0018812 "3-hydroxyacyl-CoA dehydratase activity" evidence=IDA

UNIPROTKB|Q39659 Q39659 "Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a" [Cucumis sativus (taxid:3659)]

 Score = 2090 (740.8 bits), Expect = 2.5e-216, P = 2.5e-216
 Identities = 397/708 (56%), Positives = 521/708 (73%)

Query:     2 AAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
             A  R  MEVG DGVAIIT+INPPVN+L+  ++  L+D +E+A  RDDVKAIV+TG  G+F
Sbjct:     5 AKGRTVMEVGTDGVAIITIINPPVNSLSFDVLFSLRDSYEQALRRDDVKAIVVTGAKGKF 64

Query:    62 SGGFDINVFQKVHGA-GDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGC 120
             SGGFDI  F  + G  G+   + ++S+E++ ++ E  +KP                 M C
Sbjct:    65 SGGFDITAFGVLQGGKGEQPNVRNISIEMITDIFEAARKPAVAAIDGLALGGGLEVAMAC 124

Query:   121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
             HARI+ P  QLGLPEL LG+IPGFGGTQRLPRLVGLSKA+EMML SK I  +E   LGL+
Sbjct:   125 HARISTPTAQLGLPELQLGIIPGFGGTQRLPRLVGLSKALEMMLTSKPIKGQEAHSLGLV 184

Query:   181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
             DA+V  EEL+  +R WAL+I  RR+PW+ SLHRTDKL SL+EAR++  LAR QAKK  PN
Sbjct:   185 DAIVPPEELINTARRWALEILERRRPWVHSLHRTDKLESLAEARKIFNLARAQAKKQYPN 244

Query:   241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
             +    AC+D +E G+V G  +G+ KEA+ F+ L+  DT + L+H+FFAQR+T+KVP VTD
Sbjct:   245 LKHTIACIDAVETGVVSGPRAGLWKEAEEFQGLLHSDTCKSLIHIFFAQRSTTKVPGVTD 304

Query:   301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
             +GL PR ++KVA++GGGLMGSGIATA IL+N +VVLKEVN ++L  GI  + AN++  V 
Sbjct:   305 LGLVPRQIKKVAIVGGGLMGSGIATALILSNYHVVLKEVNDKFLQAGIDRVRANLQSRVK 364

Query:   361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
             +G +T +K   ++ +LKGVL+Y  FKDVDMVIEAVIE+V LKQ+IFS+LEK CPPHC+LA
Sbjct:   365 KGNMTNEKFEKSISLLKGVLNYESFKDVDMVIEAVIENVSLKQQIFSDLEKYCPPHCMLA 424

Query:   421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXX 480
             TNTSTIDL ++GE+  S+DRIIGAHFFSPAH+MPLLEIVRT+ T+AQVI+DL+       
Sbjct:   425 TNTSTIDLELIGERIKSRDRIIGAHFFSPAHIMPLLEIVRTKHTAAQVIVDLLDVGKNIK 484

Query:   481 XXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
                    NCTGFAVNR FFPYSQ+A LL   GVD ++ID AI  FG+P+GPF+L DL G+
Sbjct:   485 KTPVVVGNCTGFAVNRMFFPYSQAAILLAEHGVDPYQIDRAISKFGMPMGPFRLCDLVGF 544

Query:   541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 600
             GVAAAT+ +F +AFP+R+++S L+ L+ +    G++  KG Y Y+K  K  P+P +   I
Sbjct:   545 GVAAATASQFVQAFPERTYKSMLIPLMQEDKNAGESTRKGFYVYDKNRKAGPNPELKKYI 604

Query:   601 EECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMS 660
             E+ R  S +    K+   + EK+IVEMI FPVVNE+CRVL EGI V+A+DLD A V+GM 
Sbjct:   605 EKARNSSGVSVDPKLT-KLPEKDIVEMIFFPVVNEACRVLAEGIAVKAADLDIAGVMGMG 663

Query:   661 FPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKG 708
             FPSYRGG++FWAD++G+NY+Y+ L++WS+ YG FFKP  +L ERA +G
Sbjct:   664 FPSYRGGLMFWADSLGSNYIYSRLEEWSKQYGGFFKPCGYLAERAVQG 711

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=IDA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IDA

GO:0006635 "fatty acid beta-oxidation" evidence=IDA

GO:0008692 "3-hydroxybutyryl-CoA epimerase activity" evidence=IDA

GO:0009514 "glyoxysome" evidence=NAS

GO:0018812 "3-hydroxyacyl-CoA dehydratase activity" evidence=IDA

UNIPROTKB|O49809 O49809 "Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a" [Brassica napus (taxid:3708)]

 Score = 2047 (725.6 bits), Expect = 8.9e-212, P = 8.9e-212
 Identities = 395/703 (56%), Positives = 513/703 (72%)

Query:     7 TMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFD 66
             T+EVG DGVA+ITLINPPVN+L+  ++  LK  +EEA SR+DVKAIV+TG  G+FSGGFD
Sbjct:    10 TIEVGADGVAVITLINPPVNSLSFDVLYSLKSNYEEALSRNDVKAIVVTGAKGKFSGGFD 69

Query:    67 INVFQKVH-GAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
             I+ F ++  G      +  +S++++ +L+E  KKP                 M CHARI+
Sbjct:    70 ISGFGEIQKGTMKEPKVGYISIDILTDLLEAAKKPSVAAIDGLALGGGLELSMACHARIS 129

Query:   126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
             AP  QLGLPEL LGVIPGFGGTQRLPRLVGL+KA+EM+L SK + +EEG  LGLIDAVV 
Sbjct:   130 APGAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVVP 189

Query:   186 SEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 245
               ELL  +R WALDIA RRKPW+ S+ +TDKL  L EARE+LK A+ Q ++ APNM    
Sbjct:   190 PAELLNAARRWALDIAERRKPWVSSVLKTDKLPPLGEAREILKFAKDQTRRQAPNMKHPL 249

Query:   246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKP 305
              CL+ +E GIV G  +G+ KEA+V  E++ LDT++GL+HVFF+QR T+KVP VTD GL P
Sbjct:   250 MCLEAVEVGIVSGSRAGLEKEAQVGSEVINLDTTKGLIHVFFSQRGTTKVPGVTDRGLVP 309

Query:   306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT 365
             R + KVA+IGGGLMGSGIATA IL+N  V+LKEVN ++L  GI  ++AN++  V +GK++
Sbjct:   310 RKINKVAIIGGGLMGSGIATALILSNYSVILKEVNEKFLEAGIGRVKANLQSRVKKGKMS 369

Query:   366 QDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425
             ++K    + +LKG LDY  F+DVDMVIEAVIE++ LKQ+IF++LEK CP HCILA+NTST
Sbjct:   370 KEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTST 429

Query:   426 IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXX 485
             IDLN +GE+T SQDRIIGAHFFSPAHVMPLLEIVRT  TSAQVI+DL+            
Sbjct:   430 IDLNKIGERTKSQDRIIGAHFFSPAHVMPLLEIVRTNHTSAQVIVDLLDVGKKIRKTPVV 489

Query:   486 XXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAA 545
               NCTGFAVNR FFPY+Q+A  LV  G D + ID A+  FG+P+GPF+L DL G+GVA A
Sbjct:   490 VGNCTGFAVNRMFFPYTQAAMFLVEHGTDPYLIDKAVSKFGMPMGPFRLCDLVGFGVAIA 549

Query:   546 TSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECRR 605
             T+ +F + FP+R+++S ++ L+ +  R G+A  KG Y Y+   K KPDP +   I++ R 
Sbjct:   550 TATQFIENFPERTYKSMIIPLMQEDKRAGEATRKGFYLYDDRRKAKPDPEIKNYIDKARS 609

Query:   606 LSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYR 665
             +S   P  K+   ++EKEI+EM  FPVVNE+CRV  EGI V+A+DLD A + GM FP YR
Sbjct:   610 VSGAKPDPKLE-KLSEKEIIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIFGMGFPPYR 668

Query:   666 GGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKG 708
             GGI+FWAD++G+ Y+Y+ L++WS+ YG FFKP  FL ER +KG
Sbjct:   669 GGIMFWADSIGSKYIYSKLEEWSKAYGEFFKPCAFLAERGSKG 711

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=ISS

GO:0004300 "enoyl-CoA hydratase activity" evidence=ISS

GO:0006635 "fatty acid beta-oxidation" evidence=ISS

GO:0008692 "3-hydroxybutyryl-CoA epimerase activity" evidence=ISS

GO:0018812 "3-hydroxyacyl-CoA dehydratase activity" evidence=ISS

TAIR|locus:2077542 MFP2 "multifunctional protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 2034 (721.1 bits), Expect = 2.1e-210, P = 2.1e-210
 Identities = 394/708 (55%), Positives = 513/708 (72%)

Query:     5 RVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
             +  MEVG DGVA+ITLINPPVN+L+  ++  LK  +EEA SR+DVKAIV+TG  GRFSGG
Sbjct:     8 KTVMEVGGDGVAVITLINPPVNSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGRFSGG 67

Query:    65 FDINVFQKVHGAGDVSLMPD---VSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCH 121
             FDI+ F ++   G+V   P    +S++++ +L+E  +KP                 M CH
Sbjct:    68 FDISGFGEMQ-KGNVK-EPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACH 125

Query:   122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
             ARI+AP  QLGLPEL LGVIPGFGGTQRLPRLVGL+KA+EM+L SK + +EEG  LGLID
Sbjct:   126 ARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLID 185

Query:   182 AVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241
             AVV   EL+  +R WALDI  RRKPW+ S+ +TDKL  L EARE+L  A+ Q  K APNM
Sbjct:   186 AVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLGEAREILTFAKAQTLKRAPNM 245

Query:   242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDI 301
                  CLD IE GIV G  +G+ KEA+V  ++V LDT++GL+HVFF+QR T+KVP VTD 
Sbjct:   246 KHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVTDR 305

Query:   302 GLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTR 361
             GL PR ++KVA+IGGGLMGSGIATA IL+N  V+LKEVN ++L  GI  ++AN++  V +
Sbjct:   306 GLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRK 365

Query:   362 GKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
             G ++Q+K    + +LKG LDY  F+DVDMVIEAVIE++ LKQ+IF++LEK CP HCILA+
Sbjct:   366 GSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILAS 425

Query:   422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 481
             NTSTIDLN +GE+T SQDRI+GAHFFSPAH+MPLLEIVRT  TSAQVI+DL+        
Sbjct:   426 NTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKK 485

Query:   482 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYG 541
                   NCTGFAVNR FFPY+Q+A  LV  G D + ID AI  FG+P+GPF+L DL G+G
Sbjct:   486 TPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRAISKFGMPMGPFRLCDLVGFG 545

Query:   542 VAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIE 601
             VA AT+ +F + F +R+++S ++ L+ +  R G+A  KG Y Y+   K KPDP +   IE
Sbjct:   546 VAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGFYLYDDKRKAKPDPELKKYIE 605

Query:   602 ECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSF 661
             + R +S +    K+  +++EK+I+EM  FPVVNE+CRV  EGI V+A+DLD A ++GM F
Sbjct:   606 KARSISGVKLDPKLA-NLSEKDIIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIMGMGF 664

Query:   662 PSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGI 709
             P YRGGI+FWAD++G+ Y+Y+ L +WS+ YG FFKP  FL ER +KG+
Sbjct:   665 PPYRGGIMFWADSIGSKYIYSRLDEWSKAYGEFFKPCAFLAERGSKGV 712

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA;IDA;IMP

GO:0005737 "cytoplasm" evidence=ISM

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IMP

GO:0005777 "peroxisome" evidence=IDA;TAS

GO:0006635 "fatty acid beta-oxidation" evidence=IEP;RCA

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0016508 "long-chain-enoyl-CoA hydratase activity" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0007031 "peroxisome organization" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

TIGR_CMR|SPO_0772 SPO_0772 "enoyl-CoA hydratase/isomerase/3-hydroxyacyl-CoA dehydrogenase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 926 (331.0 bits), Expect = 5.5e-93, P = 5.5e-93
 Identities = 233/699 (33%), Positives = 352/699 (50%)

Query:    15 VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVH 74
             + I+   NPPVNAL   +  GL    + A + +  + +++ G G  F  G DI  F    
Sbjct:    13 IVILAADNPPVNALGHAVRQGLAVGLDRAEA-EGARGVLIYGTGRTFFAGADIREF---- 67

Query:    75 GAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLP 134
               G     P +  EL  N IE     +                +  H RIA P+ ++GLP
Sbjct:    68 --GKPPKEPHLP-ELC-NRIEASPLLVVSALHGTALGGGLEVALATHYRIAVPQAKVGLP 123

Query:   135 ELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL-LKVS 193
             E+ LG++PG GGTQRLPR+ G+  A++M+   + + ++E  +LG+ID V   E   + +S
Sbjct:   124 EVHLGILPGAGGTQRLPRVAGVEAALDMITTGRHVRADEALRLGVIDRVAEGEPREIGLS 183

Query:   194 RLWAL-DIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIE 252
              L  L D  A R+P +  +     +   +    VL+  R Q            AC     
Sbjct:   184 YLRELLDEGAPRRP-VGEMPAPAPVDFDAIYAAVLRKGRGQLSPATAVRAVQAACE---A 239

Query:   253 EGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVA 312
             E       +G+ +E ++F EL+  D   GL+H FFA RA  K+P +   G+ PR +  + 
Sbjct:   240 ESFA----AGLKRERELFMELMNSDQREGLIHAFFADRAVGKLPELE--GVAPRPLAAIG 293

Query:   313 VIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANN- 371
             VIGGG MG+GIATA +L+ + V + E+  E        IE N+ G + RGKLT  + +N 
Sbjct:   294 VIGGGTMGAGIATAALLSGLSVTMLEMTPEAAEAAKGRIEGNLSGALKRGKLTAQQFDNL 353

Query:   372 ALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV 431
               K L   +DY    D D+VIEAV E + +K+++F++L+  C P  +LA+NTS +D+N +
Sbjct:   354 TTKALTLAIDYDALADADLVIEAVFEDMEVKKQVFTKLDAVCKPGAVLASNTSYLDINQI 413

Query:   432 GEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTG 491
                TS    ++G HFFSPAHVM LLE+V  ++T+  V                    C G
Sbjct:   414 AAVTSRPQDVLGLHFFSPAHVMKLLEVVIADQTAPDVAATGFALGKRLGKVSVRAGVCDG 473

Query:   492 FAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSK-EF 550
             F  NR    Y   A  ++  G   ++ID A+  FG  +GPF + DLAG  +  A  K + 
Sbjct:   474 FIGNRILSVYRTCADHMILDGASPYQIDEALEEFGFAMGPFAVADLAGLDIGWAVRKRKR 533

Query:   551 DKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPK-PDPSVLPIIEECRRLSNI 609
              +    R+  S   D L ++G  G+  GKG Y Y  G+K + P+P VLP+IE  R    I
Sbjct:   534 AEGLDPRARDSAYADKLCEAGHFGQKTGKGYYDYAAGAKARVPNPEVLPLIEAERAQQGI 593

Query:   610 MPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIV 669
              P      + ++ EIV   +  +VNE+ +V+ EGI  R  D+D   + G  FP YRGG +
Sbjct:   594 TPR-----AFSKDEIVRRYMAAMVNEAAKVVGEGIARRPLDVDVTLLYGYGFPRYRGGPL 648

Query:   670 FWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKG 708
              WAD  G   +   +K+W+     F++P+  LE+   +G
Sbjct:   649 KWADMQGLPELLADIKRWAAEDAYFWQPAPLLEQLVAEG 687

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISS

GO:0004300 "enoyl-CoA hydratase activity" evidence=ISS

GO:0009062 "fatty acid catabolic process" evidence=ISS

ZFIN|ZDB-GENE-031222-5 hadhaa "hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase, alpha subunit a" [Danio rerio (taxid:7955)]

 Score = 711 (255.3 bits), Expect = 6.2e-93, Sum P(2) = 6.2e-93
 Identities = 190/600 (31%), Positives = 299/600 (49%)

Query:   128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV--- 184
             KT LG PE+ LG++PG GGTQRLP++VGL  A +MML  ++I +++  K+GL+  +V   
Sbjct:   164 KTVLGTPEVMLGLLPGAGGTQRLPKMVGLPAAFDMMLTGRNIRADKAKKMGLVHQLVDPL 223

Query:   185 ----------TSEELLKVSRLWALDIAARRKPWIRS---LHRT-DKLGSLSEARE-VLKL 229
                       T E L +V+  +A  +AA++    +    + +  D +  LS  R+ + K 
Sbjct:   224 GPGLKSPEERTIEYLEEVAVDFAKGLAAKKVTLEKKKGLMQKVQDFVMGLSLVRQQIYKT 283

Query:   230 ARLQAKKTAPNM-PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFA 288
                +  K +  + P     ++ I+ GI  G  +G L EA+ F +L M   SR L+ ++  
Sbjct:   284 VHGKVMKQSKGLYPAPLKIIECIQTGIEKGNAAGYLAEAQNFGQLAMSSESRALIGLYHG 343

Query:   289 QRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348
             Q A  K       G   R V+ +A++G GLMG+GIA   I   +  +LK+   E L +G 
Sbjct:   344 QVACKK----NHFGKPEREVKNLAILGAGLMGAGIAQVTIDKGVATILKDTTLEGLARGE 399

Query:   349 KTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSE 408
             + +   +     +  LT  + +  +  L G LDY  F+  DMVIEAV E + +K K+  E
Sbjct:   400 QQVYKGLNDKTKKKSLTTFERDGIMSKLSGQLDYHGFEKADMVIEAVFEDLAIKHKVLKE 459

Query:   409 LEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQV 468
             +E   PPHCI ATNTS + +  +   +   +++IG H+FSP   M LLEI+ T++TS   
Sbjct:   460 VEAVIPPHCIFATNTSALPIKDIAAASKRPEKVIGMHYFSPVDKMQLLEIITTDKTSKDT 519

Query:   469 ILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLP 528
                 +              +  GF   R   P    A  ++  GV   ++DS    FG P
Sbjct:   520 TASAVAIGLKQGKLIVVVGDGPGFYTTRCLAPMLAEAVRILQEGVGPKKLDSLTTGFGFP 579

Query:   529 IGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLL---LKSGRNGKANGKGLYTYE 585
             +G   L D  G  VAA  +++  KAF  R F    VD L   ++ G  G+ +GKG Y Y 
Sbjct:   580 VGLATLADEVGIDVAAHVAEDLGKAFGAR-FGGGNVDFLKTMVQKGFKGRKSGKGCYVYG 638

Query:   586 KGSKPKPDPSVLPIIEECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIV 645
               SK K   S    I +  +L+   P    P   ++++I   ++   VNE+   L+EGI+
Sbjct:   639 AKSKEKKVNSEAEEILKSFKLT--AP----PAVSSDEDIQYRLVSRFVNEAVLCLQEGIL 692

Query:   646 VRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERA 705
                   D  +V G+ FP   GG   + D+ GA+ +   +K++ ++YGN F P + L + A
Sbjct:   693 ADPIQGDIGAVFGLGFPPCLGGPFRFVDSYGADKLIQKMKRFEEVYGNQFSPCQLLLDHA 752

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0009617 "response to bacterium" evidence=IDA

MGI|MGI:2135593 Hadha "hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit" [Mus musculus (taxid:10090)]

 Score = 715 (256.8 bits), Expect = 1.1e-91, Sum P(2) = 1.1e-91
 Identities = 184/600 (30%), Positives = 301/600 (50%)

Query:   128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV--- 184
             KT LG+PE+ LG++PG GGTQRLP++VG+  A +MML  ++I ++   K+GL+D +V   
Sbjct:   166 KTVLGVPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRNIRADRAKKMGLVDQLVEPL 225

Query:   185 ----------TSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEA-----REVLKL 229
                       T E L +V+  +A  +A R+    +S    +KL + +       ++V K 
Sbjct:   226 GPGIKSPEERTIEYLEEVAVNFAKGLADRKVSAKQSKGLVEKLTTYAMTVPFVRQQVYKT 285

Query:   230 ARLQAKKTAPNM-PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFA 288
                + KK    + P     +D ++ G+  G  +G L E++ F EL +   S+ L+ ++  
Sbjct:   286 VEEKVKKQTKGLYPAPLKIIDAVKAGLEQGSDAGYLAESQKFGELALTKESKALMGLYNG 345

Query:   289 QRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348
             Q    K       G   + V+++A++G GLMG+GIA   +   +  +LK+     L +G 
Sbjct:   346 QVLCKK----NKFGAPQKNVQQLAILGAGLMGAGIAQVSVDKGLKTLLKDTTVTGLGRGQ 401

Query:   349 KTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSE 408
             + +   +   V +  LT  + ++    L G LDY  F+  DMVIEAV E + +K K+  E
Sbjct:   402 QQVFKGLNDKVKKKALTSFERDSIFSNLIGQLDYKGFEKADMVIEAVFEDLGVKHKVLKE 461

Query:   409 LEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQV 468
             +E   P HCI A+NTS + +N +   +   +++IG H+FSP   M LLEI+ T++TS   
Sbjct:   462 VESVTPEHCIFASNTSALPINQIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTDKTSKDT 521

Query:   469 ILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLP 528
                 +              +  GF   R   P       ++  GVD  ++D+    FG P
Sbjct:   522 TASAVAVGLRQGKVIIVVKDGPGFYTTRCLAPMMSEVMRILQEGVDPKKLDALTTGFGFP 581

Query:   529 IGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLL---LKSGRNGKANGKGLYTYE 585
             +G   L D  G  VA   +++  KAF +R F    V+LL   +  G  G+ +GKG Y Y+
Sbjct:   582 VGAATLADEVGVDVAQHVAEDLGKAFGER-FGGGSVELLKQMVSKGFLGRKSGKGFYIYQ 640

Query:   586 KGSKPKPDPSVLPIIEECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIV 645
             +GSK K   S +  I     L+N+    K  +S +++++   ++   VNE+   L+EGI+
Sbjct:   641 EGSKNKSLNSEMDNI-----LANLRLPAKPEVS-SDEDVQYRVITRFVNEAVLCLQEGIL 694

Query:   646 VRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERA 705
                ++ D  +V G+ FP   GG   + D  GA  V   L+K+   YG  F P + L + A
Sbjct:   695 ATPAEGDIGAVFGLGFPPCLGGPFRFVDLYGAQKVVDRLRKYESAYGTQFTPCQLLLDHA 754

GO:0000062 "fatty-acyl-CoA binding" evidence=ISO

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISO

GO:0003988 "acetyl-CoA C-acyltransferase activity" evidence=ISO

GO:0004300 "enoyl-CoA hydratase activity" evidence=ISO;TAS

GO:0005739 "mitochondrion" evidence=ISO;IDA;TAS

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=ISO;IMP

GO:0008152 "metabolic process" evidence=TAS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=ISO

GO:0016508 "long-chain-enoyl-CoA hydratase activity" evidence=ISO

GO:0016509 "long-chain-3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISO;IDA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0032403 "protein complex binding" evidence=ISO

GO:0032868 "response to insulin stimulus" evidence=IMP

GO:0042493 "response to drug" evidence=ISO

GO:0042645 "mitochondrial nucleoid" evidence=ISO

GO:0050662 "coenzyme binding" evidence=IEA

GO:0051287 "NAD binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IDA

ZFIN|ZDB-GENE-041111-204 hadhab "hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase, alpha subunit b" [Danio rerio (taxid:7955)]

 Score = 700 (251.5 bits), Expect = 1.9e-91, Sum P(2) = 1.9e-91
 Identities = 182/601 (30%), Positives = 299/601 (49%)

Query:   128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT-- 185
             KT LG PE+ LG++PG GGTQRLP+++GL  A ++ML  +SI +++  K+GL+  +V   
Sbjct:   166 KTVLGCPEVMLGLLPGAGGTQRLPKMLGLPSAFDVMLTGRSIRADKAKKMGLVHQLVDTL 225

Query:   186 -----SEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLK---LARLQAKKT 237
                  S E   +  L  + + A R    + +  T + G + + ++ +      R Q   T
Sbjct:   226 GPGLKSPEERTIEYLEEVAVEAARGLAQKKITLTKEKGWMQKIQDYVMSYPFVRQQIYNT 285

Query:   238 APN--MPQ----HQACLDVIEE---GIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFA 288
                  M Q    + A L +IE    G+  G  +G L E++ F +L M + S+ L+ ++  
Sbjct:   286 VEKKVMKQTKGLYPAPLKIIESVKAGVEQGPTTGYLVESQQFGKLAMTNESKALIGLYHG 345

Query:   289 QRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348
             Q A  K       G   + V+ +A++G GLMG+GIA   +   I+ +LK+   + L +G 
Sbjct:   346 QVACKK----NRFGTPEKEVKTLAILGAGLMGAGIAQVTVDKGIHTILKDTTVDGLSRGE 401

Query:   349 KTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSE 408
             + +   +     +  LT  + +  L  L G LDY+ F   DM+IEAV E + +K K+  E
Sbjct:   402 QQVFKGLNDKTKKKSLTSFERDTFLSNLTGQLDYNGFNKADMIIEAVFEDLSIKHKVLKE 461

Query:   409 LEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQV 468
             +E   PPHCI ATNTS + +  +   +   D+++G H+FSP   M LLEI+ T++TS   
Sbjct:   462 VEAVIPPHCIFATNTSALPIKDIAAVSKRPDKVVGMHYFSPVDKMQLLEIITTDKTSKDT 521

Query:   469 ILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLP 528
                 +              +  GF   R   P    A  ++  G D  ++DS    FG P
Sbjct:   522 TASAVAVGLKQGKVIIVVGDGPGFYTTRCLAPMLAEAVRILQEGTDPKKLDSLTTGFGFP 581

Query:   529 IGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLL---LKSGRNGKANGKGLYTYE 585
             +G   L D  G  VAA  +++  KAF  R F    V+ L   ++ G  G+ +GKG Y Y+
Sbjct:   582 VGAATLADEVGIDVAAHVAEDLGKAFGSR-FGGGNVEFLKSMVEKGFKGRKSGKGCYVYQ 640

Query:   586 KGSKPKP-DPSVLPIIEECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGI 644
              G K +  +   L I+E  +   N        IS ++ +I   ++   VNE+   L+EGI
Sbjct:   641 PGLKRRDVNTEALEILEAYKLTPN------AAIS-SDSDIQYRLVSRFVNEAVLCLQEGI 693

Query:   645 VVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEER 704
             +    + D  +V G+ FP   GG   + D+ GA+ +   ++++ +++GN F P + L + 
Sbjct:   694 LANPVEGDIGAVFGLGFPPCLGGPFRFVDSFGADKLVEKMRRFEEVFGNQFTPCQLLLDH 753

Query:   705 A 705
             A
Sbjct:   754 A 754

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

RGD|620512 Hadha "hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit" [Rattus norvegicus (taxid:10116)]

 Score = 711 (255.3 bits), Expect = 2.4e-91, Sum P(2) = 2.4e-91
 Identities = 184/599 (30%), Positives = 297/599 (49%)

Query:   128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV--- 184
             KT LG+PE+ LG++PG GGTQRLP++VG+  A +MML  ++I ++   K+GL+D +V   
Sbjct:   166 KTVLGVPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRNIRADRAKKMGLVDQLVDPL 225

Query:   185 ----------TSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEA-----REVLKL 229
                       T E L +V+  +A  +A R+    +S    +KL S +       ++V K 
Sbjct:   226 GPGIKSPEERTIEYLEEVAVNFAKGLADRKVSAKQSKGLMEKLTSYAMTIPFVRQQVYKT 285

Query:   230 ARLQAKKTAPNM-PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFA 288
                + KK    + P     +D ++ G+  G  +G L E++ F EL +   S+ L+ ++  
Sbjct:   286 VEEKVKKQTKGLYPAPLKIIDAVKTGLEQGNDAGYLAESEKFGELALTKESKALMGLYNG 345

Query:   289 QRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348
             Q    K       G   + V+++A++G GLMG+GIA   +   +  +LK+     L +G 
Sbjct:   346 QVLCKK----NKFGAPQKTVQQLAILGAGLMGAGIAQVSVDKGLKTLLKDTTVTGLGRGQ 401

Query:   349 KTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSE 408
             + +   +   V +  LT  + ++    L G LDY  F+  DMVIEAV E + +K K+  E
Sbjct:   402 QQVFKGLNDKVKKKALTSFERDSIFSNLIGQLDYKGFEKADMVIEAVFEDLAVKHKVLKE 461

Query:   409 LEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQV 468
             +E   P HCI A+NTS + +N +   +   +++IG H+FSP   M LLEI+ T++TS   
Sbjct:   462 VESVTPEHCIFASNTSALPINQIAAVSQRPEKVIGMHYFSPVDKMQLLEIITTDKTSKDT 521

Query:   469 ILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLP 528
                 +              +  GF   R   P       ++  GVD  ++D+    FG P
Sbjct:   522 TASAVAVGLKQGKVIIVVKDGPGFYTTRCLAPMMSEVIRILQEGVDPKKLDALTTGFGFP 581

Query:   529 IGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLLKSGRNGKANGKGLYTYEK 586
             +G   L D  G  VA   +++  KAF +R       L+ L++  G  G+ +GKG Y Y+ 
Sbjct:   582 VGAATLADEVGIDVAQHVAEDLGKAFGERFGGGSVELLKLMVSKGFLGRKSGKGFYIYQS 641

Query:   587 GSKPKPDPSVLPIIEECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVV 646
             GSK K   S +  I     L N+    K  +S ++++I   ++   VNE+   L+EGI+ 
Sbjct:   642 GSKNKNLNSEIDNI-----LVNLRLPAKPEVS-SDEDIQYRVITRFVNEAVLCLQEGILA 695

Query:   647 RASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERA 705
                + D  +V G+ FP   GG   + D  GA  V   L+K+   YG  F P + L + A
Sbjct:   696 TPEEGDIGAVFGLGFPPCLGGPFRFVDLYGAQKVVDRLRKYESAYGTQFTPCQLLRDLA 754

GO:0000062 "fatty-acyl-CoA binding" evidence=IDA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IMP;IDA

GO:0003988 "acetyl-CoA C-acyltransferase activity" evidence=IDA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IMP;IDA

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA;TAS

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0006635 "fatty acid beta-oxidation" evidence=IEA;ISO;IDA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IDA;TAS

GO:0016508 "long-chain-enoyl-CoA hydratase activity" evidence=IDA

GO:0016509 "long-chain-3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISO;IDA

GO:0032403 "protein complex binding" evidence=IMP

GO:0032868 "response to insulin stimulus" evidence=IEA;ISO

GO:0042493 "response to drug" evidence=IDA

GO:0042645 "mitochondrial nucleoid" evidence=IEA;ISO

GO:0051287 "NAD binding" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B1X9L4	FADJ_ECODH	1, ., 1, ., 1, ., 3, 5	0.3221	0.9420	0.9565	yes	no
B2TWV4	FADJ_SHIB3	1, ., 1, ., 1, ., 3, 5	0.3249	0.9420	0.9565	yes	no
Q32DJ4	FADJ_SHIDS	1, ., 1, ., 1, ., 3, 5	0.3221	0.9420	0.9565	yes	no
A4WCW6	FADJ_ENT38	1, ., 1, ., 1, ., 3, 5	0.3248	0.9379	0.9510	yes	no
B5RCL3	FADJ_SALG2	1, ., 1, ., 1, ., 3, 5	0.3224	0.9324	0.9454	yes	no
B5XVW2	FADJ_KLEP3	1, ., 1, ., 1, ., 3, 5	0.3324	0.9379	0.9523	yes	no
Q3YZM2	FADJ_SHISS	1, ., 1, ., 1, ., 3, 5	0.3235	0.9420	0.9565	yes	no
Q9DBM2	ECHP_MOUSE	1, ., 1, ., 1, ., 3, 5	0.3263	0.9296	0.9387	yes	no
O49809	MFPA_BRANA	1, ., 1, ., 1, ., 3, 5	0.5922	0.9875	0.9875	N/A	no
B5R3R9	FADJ_SALEP	1, ., 1, ., 1, ., 3, 5	0.3224	0.9324	0.9454	yes	no
B5EZR9	FADJ_SALA4	1, ., 1, ., 1, ., 3, 5	0.3224	0.9324	0.9454	yes	no
B7MY16	FADJ_ECO81	1, ., 1, ., 1, ., 3, 5	0.3235	0.9420	0.9565	yes	no
Q39659	MFPA_CUCSA	1, ., 1, ., 1, ., 3, 5	0.5952	0.9820	0.9820	N/A	no
Q83QQ0	FADJ_SHIFL	1, ., 1, ., 1, ., 3, 5	0.3235	0.9420	0.9565	yes	no
Q1R972	FADJ_ECOUT	1, ., 1, ., 1, ., 3, 5	0.3235	0.9420	0.9565	yes	no
B5BBA1	FADJ_SALPK	1, ., 1, ., 1, ., 3, 5	0.3224	0.9324	0.9454	yes	no
A1ADI8	FADJ_ECOK1	1, ., 1, ., 1, ., 3, 5	0.3235	0.9420	0.9565	yes	no
Q31YB7	FADJ_SHIBS	1, ., 1, ., 1, ., 3, 5	0.3221	0.9420	0.9565	yes	no
Q9ZPI6	AIM1_ARATH	1, ., 1, ., 1, ., 3, 5	0.7472	0.9862	0.9916	yes	no
Q8FFG4	FADJ_ECOL6	1, ., 1, ., 1, ., 3, 5	0.3277	0.9420	0.9565	yes	no
B5FPN1	FADJ_SALDC	1, ., 1, ., 1, ., 3, 5	0.3224	0.9324	0.9454	yes	no
B7M6M2	FADJ_ECO8A	1, ., 1, ., 1, ., 3, 5	0.3221	0.9420	0.9565	yes	no
A8A2L0	FADJ_ECOHS	1, ., 1, ., 1, ., 3, 5	0.3300	0.9406	0.9551	yes	no
Q6NYL3	ECHP_DANRE	1, ., 1, ., 1, ., 3, 5	0.3609	0.9337	0.9428	yes	no
Q5PCX6	FADJ_SALPA	1, ., 1, ., 1, ., 3, 5	0.3224	0.9324	0.9454	yes	no
P07896	ECHP_RAT	1, ., 1, ., 1, ., 3, 5	0.3384	0.9255	0.9293	yes	no
B6I6Q4	FADJ_ECOSE	1, ., 1, ., 1, ., 3, 5	0.3249	0.9420	0.9565	yes	no
B5YXY4	FADJ_ECO5E	1, ., 1, ., 1, ., 3, 5	0.3249	0.9420	0.9565	yes	no
C4ZVN2	FADJ_ECOBW	1, ., 1, ., 1, ., 3, 5	0.3221	0.9420	0.9565	yes	no
B1LME7	FADJ_ECOSM	1, ., 1, ., 1, ., 3, 5	0.3203	0.9475	0.9621	yes	no
B7NP24	FADJ_ECO7I	1, ., 1, ., 1, ., 3, 5	0.3221	0.9420	0.9565	yes	no
Q5R5M8	ECHP_PONAB	1, ., 1, ., 1, ., 3, 5	0.3379	0.9296	0.9322	yes	no
B7UFZ8	FADJ_ECO27	1, ., 1, ., 1, ., 3, 5	0.3235	0.9420	0.9565	yes	no
B7LLD0	FADJ_ESCF3	1, ., 1, ., 1, ., 3, 5	0.3384	0.9406	0.9551	yes	no
B4TCA8	FADJ_SALHS	1, ., 1, ., 1, ., 3, 5	0.3224	0.9324	0.9454	yes	no
Q0T2E6	FADJ_SHIF8	1, ., 1, ., 1, ., 3, 5	0.3235	0.9420	0.9565	yes	no
B1IXA5	FADJ_ECOLC	1, ., 1, ., 1, ., 3, 5	0.3221	0.9420	0.9565	yes	no
B7N5V2	FADJ_ECOLU	1, ., 1, ., 1, ., 3, 5	0.3235	0.9420	0.9565	yes	no
Q08426	ECHP_HUMAN	1, ., 1, ., 1, ., 3, 5	0.3393	0.9296	0.9322	yes	no
Q0TFA6	FADJ_ECOL5	1, ., 1, ., 1, ., 3, 5	0.3244	0.9337	0.9481	yes	no
Q8W1L6	MFP_ORYSJ	1, ., 1, ., 1, ., 3, 5	0.6988	0.9958	0.9944	yes	no
B4SZR0	FADJ_SALNS	1, ., 1, ., 1, ., 3, 5	0.3238	0.9241	0.9370	yes	no
B7MGV7	FADJ_ECO45	1, ., 1, ., 1, ., 3, 5	0.3235	0.9420	0.9565	yes	no
B7LBJ5	FADJ_ECO55	1, ., 1, ., 1, ., 3, 5	0.3207	0.9420	0.9565	yes	no
A6TC19	FADJ_KLEP7	1, ., 1, ., 1, ., 3, 5	0.3291	0.9406	0.9551	yes	no
A7ZPF8	FADJ_ECO24	1, ., 1, ., 1, ., 3, 5	0.3249	0.9420	0.9565	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.983
3rd Layer	5.1.2.3	0.979
3rd Layer	1.1.1.35	0.979
4th Layer	4.2.1.17	0.979
3rd Layer	5.3.3.8	0.979
3rd Layer	4.2.1	0.983
3rd Layer	5.1.2	0.983
3rd Layer	5.3.3	0.983

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	725
PRK11154	708	PRK11154, fadJ, multifunctional fatty acid oxidati	1e-162
TIGR02440	699	TIGR02440, FadJ, fatty oxidation complex, alpha su	1e-135
PRK11730	715	PRK11730, fadB, multifunctional fatty acid oxidati	1e-126
TIGR02441	737	TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c	1e-123
TIGR02437	714	TIGR02437, FadB, fatty oxidation complex, alpha su	1e-122
COG1250	307	COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Li	2e-85
pfam02737	180	pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenas	1e-63
PRK07658	257	PRK07658, PRK07658, enoyl-CoA hydratase; Provision	1e-63
cd06558	195	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme	2e-59
PRK05808	282	PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydroge	2e-59
PLN02545	295	PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydroge	7e-55
TIGR02279	503	TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehy	9e-53
pfam00378	245	pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami	2e-51
COG1024	257	COG1024, CaiD, Enoyl-CoA hydratase/carnithine race	2e-51
PRK08268	507	PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogena	2e-49
PRK09260	288	PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydroge	2e-46
PRK06688	259	PRK06688, PRK06688, enoyl-CoA hydratase; Provision	2e-45
PRK07819	286	PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydroge	2e-45
PRK06035	291	PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenas	2e-43
PRK06130	311	PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydroge	1e-40
PRK07530	292	PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydroge	3e-40
PRK07657	260	PRK07657, PRK07657, enoyl-CoA hydratase; Provision	1e-39
PRK08138	261	PRK08138, PRK08138, enoyl-CoA hydratase; Provision	5e-39
PRK05809	260	PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydrata	7e-39
PRK05862	257	PRK05862, PRK05862, enoyl-CoA hydratase; Provision	3e-34
PRK06494	259	PRK06494, PRK06494, enoyl-CoA hydratase; Provision	7e-34
PRK09674	255	PRK09674, PRK09674, enoyl-CoA hydratase-isomerase;	3e-33
PRK05980	260	PRK05980, PRK05980, enoyl-CoA hydratase; Provision	4e-33
PRK08293	287	PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydroge	1e-31
PRK06495	257	PRK06495, PRK06495, enoyl-CoA hydratase; Provision	1e-31
PRK06127	269	PRK06127, PRK06127, enoyl-CoA hydratase; Provision	3e-30
PRK09076	258	PRK09076, PRK09076, enoyl-CoA hydratase; Provision	1e-29
PRK06190	258	PRK06190, PRK06190, enoyl-CoA hydratase; Provision	6e-27
PRK08150	255	PRK08150, PRK08150, enoyl-CoA hydratase; Provision	1e-26
PRK08258	277	PRK08258, PRK08258, enoyl-CoA hydratase; Provision	2e-26
PRK06144	262	PRK06144, PRK06144, enoyl-CoA hydratase; Provision	4e-26
PRK08252	254	PRK08252, PRK08252, enoyl-CoA hydratase; Provision	6e-26
PRK06210	272	PRK06210, PRK06210, enoyl-CoA hydratase; Provision	1e-25
PRK09245	266	PRK09245, PRK09245, enoyl-CoA hydratase; Provision	1e-25
PLN02888	265	PLN02888, PLN02888, enoyl-CoA hydratase	1e-25
PLN02600	251	PLN02600, PLN02600, enoyl-CoA hydratase	6e-25
PRK08260	296	PRK08260, PRK08260, enoyl-CoA hydratase; Provision	5e-24
PRK03580	261	PRK03580, PRK03580, carnitinyl-CoA dehydratase; Pr	6e-24
TIGR01929	259	TIGR01929, menB, naphthoate synthase (dihydroxynap	6e-24
PRK05995	262	PRK05995, PRK05995, enoyl-CoA hydratase; Provision	9e-24
PRK06142	272	PRK06142, PRK06142, enoyl-CoA hydratase; Provision	1e-23
PRK05981	266	PRK05981, PRK05981, enoyl-CoA hydratase; Provision	3e-23
PRK06143	256	PRK06143, PRK06143, enoyl-CoA hydratase; Provision	2e-22
PRK08259	254	PRK08259, PRK08259, enoyl-CoA hydratase; Provision	3e-22
PRK05864	276	PRK05864, PRK05864, enoyl-CoA hydratase; Provision	6e-22
PRK05869	222	PRK05869, PRK05869, enoyl-CoA hydratase; Validated	7e-22
pfam00725	97	pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase,	2e-21
PRK07799	263	PRK07799, PRK07799, enoyl-CoA hydratase; Provision	3e-21
PRK07509	262	PRK07509, PRK07509, enoyl-CoA hydratase; Provision	4e-21
COG0447	282	COG0447, MenB, Dihydroxynaphthoic acid synthase [C	5e-21
PRK08269	314	PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydroge	4e-20
PRK07938	249	PRK07938, PRK07938, enoyl-CoA hydratase; Provision	5e-20
TIGR02280	256	TIGR02280, PaaB1, phenylacetate degradation probab	7e-20
PRK07511	260	PRK07511, PRK07511, enoyl-CoA hydratase; Provision	7e-20
PRK05870	249	PRK05870, PRK05870, enoyl-CoA hydratase; Provision	9e-20
PLN02664	275	PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-d	1e-19
PRK07110	249	PRK07110, PRK07110, polyketide biosynthesis enoyl-	1e-19
PRK07396	273	PRK07396, PRK07396, dihydroxynaphthoic acid synthe	1e-17
TIGR03210	256	TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hyd	2e-17
PLN02921	327	PLN02921, PLN02921, naphthoate synthase	5e-17
PRK08140	262	PRK08140, PRK08140, enoyl-CoA hydratase; Provision	1e-16
PRK08290	288	PRK08290, PRK08290, enoyl-CoA hydratase; Provision	3e-16
PRK06023	251	PRK06023, PRK06023, enoyl-CoA hydratase; Provision	3e-16
PRK07327	268	PRK07327, PRK07327, enoyl-CoA hydratase; Provision	5e-16
PRK07531	495	PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA	5e-16
PRK06213	229	PRK06213, PRK06213, enoyl-CoA hydratase; Provision	7e-16
PRK07659	260	PRK07659, PRK07659, enoyl-CoA hydratase; Provision	1e-15
PRK06129	308	PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenas	2e-15
PRK07468	262	PRK07468, PRK07468, enoyl-CoA hydratase; Provision	2e-15
PRK06563	255	PRK06563, PRK06563, enoyl-CoA hydratase; Provision	5e-15
TIGR03189	251	TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecar	6e-15
PRK07854	243	PRK07854, PRK07854, enoyl-CoA hydratase; Provision	7e-15
PRK07260	255	PRK07260, PRK07260, enoyl-CoA hydratase; Provision	8e-15
PRK08788	287	PRK08788, PRK08788, enoyl-CoA hydratase; Validated	3e-14
PRK08139	266	PRK08139, PRK08139, enoyl-CoA hydratase; Validated	4e-14
PRK11423	261	PRK11423, PRK11423, methylmalonyl-CoA decarboxylas	7e-14
PRK07827	260	PRK07827, PRK07827, enoyl-CoA hydratase; Provision	3e-13
PRK09120	275	PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydrata	6e-13
PRK08272	302	PRK08272, PRK08272, enoyl-CoA hydratase; Provision	1e-12
PRK05617	342	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrol	1e-12
PRK06072	248	PRK06072, PRK06072, enoyl-CoA hydratase; Provision	2e-12
PRK07112	255	PRK07112, PRK07112, polyketide biosynthesis enoyl-	6e-12
PLN03214	278	PLN03214, PLN03214, probable enoyl-CoA hydratase/i	5e-10
PLN02874	379	PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrol	1e-09
PRK08321	302	PRK08321, PRK08321, naphthoate synthase; Validated	1e-09
PRK07066	321	PRK07066, PRK07066, 3-hydroxybutyryl-CoA dehydroge	3e-09
TIGR03200	360	TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-car	9e-09
PLN02988	381	PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrol	1e-08
PLN02851	407	PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrol	5e-08
PLN02267	239	PLN02267, PLN02267, enoyl-CoA hydratase/isomerase	7e-06
PRK05674	265	PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydr	5e-05
PRK12478	298	PRK12478, PRK12478, enoyl-CoA hydratase; Provision	5e-05
pfam00725	97	pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase,	3e-04
PLN02157	401	PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrol	3e-04
TIGR03222	546	TIGR03222, benzo_boxC, benzoyl-CoA-dihydrodiol lya	0.001
PRK08184	550	PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase;	0.002
PRK08268	507	PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogena	0.004

>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score =  485 bits (1251), Expect = e-162
 Identities = 254/726 (34%), Positives = 373/726 (51%), Gaps = 38/726 (5%)

Query: 1   MAAPRV-TMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIVLT-G 56
           M      T+ V  D +A+IT+  P   +N L       ++   ++     ++K +V   G
Sbjct: 1   MEMASAFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISG 60

Query: 57  NGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLEL 116
               F  G DIN+      A +   +     + +   IE    P+VAA+ G  LGGGLEL
Sbjct: 61  KPDNFIAGADINMLAACKTAQEAEALARQGQQ-LFAEIEALPIPVVAAIHGACLGGGLEL 119

Query: 117 AMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG 174
           A+ CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A++M+L  K + +++ 
Sbjct: 120 ALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQA 179

Query: 175 WKLGLIDAVVTSEELLKVSRLWALD--IAARRKPWIRSLHRTDKLGSLSEAREVL-KLAR 231
            KLGL+D VV    LL+V+   A     A R  P    L   + LG     R +L K AR
Sbjct: 180 LKLGLVDDVVPHSILLEVAVELAKKGKPARRPLPVRERLLEGNPLG-----RALLFKQAR 234

Query: 232 LQA-KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQR 290
            +   KT  N P  +  LDV+  G+  G  SG   EA+ F EL M   S  L  +FFA  
Sbjct: 235 KKTLAKTQGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFATT 294

Query: 291 ATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIK 349
              K         KPR V KV V+GGGLMG GIA        + V +K++N + +   +K
Sbjct: 295 EMKKDTGS---DAKPRPVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALK 351

Query: 350 TIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSEL 409
                +   V R  L   + +  + ++ G  DY  FK  D+VIEAV E + LKQ++ +E+
Sbjct: 352 YSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEAVFEDLALKQQMVAEV 411

Query: 410 EKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVI 469
           E+ C PH I A+NTS++ +  +    +  +++IG H+FSP   MPL+E++   +TSA+ I
Sbjct: 412 EQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETI 471

Query: 470 LDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPY-SQSARLLVSLGVDVFRIDSAIRSFGLP 528
              + + K   K P+VV +  GF VNR   PY +++ARLL+  G  +  ID+A+  FG P
Sbjct: 472 ATTVALAKKQGKTPIVVRDGAGFYVNRILAPYINEAARLLLE-GEPIEHIDAALVKFGFP 530

Query: 529 IGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP-LVDLLLKSGRNGKANGKGLYTYEKG 587
           +GP  LLD  G  V        + A  +R F +P   D LL   R G+ NG+G Y Y + 
Sbjct: 531 VGPITLLDEVGIDVGTKIIPILEAALGER-FSAPAAFDKLLNDDRKGRKNGRGFYLYGQK 589

Query: 588 SKPK---PDPSVLPIIEECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGI 644
            K      D SV P++        I P  ++       EI E  +  ++NE+ R L+EGI
Sbjct: 590 GKKSKKQVDESVYPLL-------GITPQSRLS----ANEIAERCVMLMLNEAVRCLDEGI 638

Query: 645 VVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEER 704
           +  A D D  +V G+ FP + GG   + D++GA  V   L++ +  YG+ F P   L E 
Sbjct: 639 IRSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGDRFTPCERLVEM 698

Query: 705 ATKGIP 710
           A +G  
Sbjct: 699 AERGES 704

Length = 708

>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ

 Score =  413 bits (1064), Expect = e-135
 Identities = 244/714 (34%), Positives = 364/714 (50%), Gaps = 33/714 (4%)

Query: 7   TMEVGNDGVAIITL--INPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSG 63
           T+ V  DG+AI+T+      +N L       + +   +      ++ +VL +G    F  
Sbjct: 3   TLTVREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIA 62

Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
           G DI++      AG+   +      L    +E    P+VAA+ G  LGGGLELA+ CH+R
Sbjct: 63  GADISMLAACQTAGEAKALAQQGQVLF-AELEALPIPVVAAIHGACLGGGLELALACHSR 121

Query: 124 IAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
           + +   KT LGLPE+ LG++PG GGTQRLPRL+G+S A++M+L  K + +++  KLGL+D
Sbjct: 122 VCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVD 181

Query: 182 AVVTSEELLKVSRLWALD--IAARRKPWIRSLHRTDKLGSLSEAREVL--KLARLQAKKT 237
            VV    LL  +   AL      +       L     LG     R +L  + A+  AKKT
Sbjct: 182 DVVPQSILLDTAVEMALKGKPIRKPLSLQERLLEGTPLG-----RALLFDQAAKKTAKKT 236

Query: 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPN 297
             N P  +  LDV+ +G+  G   G+  EA+ F ELVM   S  L  +FFA     K   
Sbjct: 237 QGNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFATTEMKKETG 296

Query: 298 VTDIGLKPRGVRKVAVIGGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVR 356
                  P  ++KV ++GGGLMG GIA+       I V +K++N + +   +K     + 
Sbjct: 297 SDAT---PAKIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLD 353

Query: 357 GLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPH 416
             V R  +T  + +N + ++ G  DY  FKDVD+VIEAV E + LK ++  ++E+ C  H
Sbjct: 354 KGVKRRHMTPAERDNQMALITGTTDYRGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAH 413

Query: 417 CILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVG 476
            I A+NTS++ +  +    S  + +IG H+FSP   MPL+E++    TS Q I   + + 
Sbjct: 414 TIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALA 473

Query: 477 KIIKKVPVVVGNCTGFAVNRAFFPY-SQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLL 535
           K   K P+VV +  GF VNR   PY +++ARLL+  G  V  ID A+  FG P+GP  LL
Sbjct: 474 KKQGKTPIVVADKAGFYVNRILAPYMNEAARLLLE-GEPVEHIDKALVKFGFPVGPITLL 532

Query: 536 DLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKP-DP 594
           D  G  V A  S   +    +R     + D LL   R G+ NGKG Y Y   +K K  D 
Sbjct: 533 DEVGIDVGAKISPILEAELGERFKAPAVFDKLLSDDRKGRKNGKGFYLYGAATKKKAVDE 592

Query: 595 SVLPIIEECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDA 654
           SV  ++        I PG     S   +  V ++L    NE+ R L+EG++    D D  
Sbjct: 593 SVYGLL-------GIKPGVDKEASAVAERCVMLML----NEAVRCLDEGVIRSPRDGDIG 641

Query: 655 SVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKG 708
           ++ G+ FP + GG   + D +GA+ V   L++    YG+ F P + L   A + 
Sbjct: 642 AIFGIGFPPFLGGPFRYIDTLGADNVVKILERLQTQYGDRFTPCQRLVAMAAEK 695

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699

>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score =  391 bits (1007), Expect = e-126
 Identities = 239/720 (33%), Positives = 370/720 (51%), Gaps = 48/720 (6%)

Query: 13  DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DG+A +    P  VN L    +A L +  +   ++ D+K ++LT     F  G DI  F 
Sbjct: 15  DGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFL 74

Query: 72  KVHGAGDVSLMPDVS-VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
            +  A +  L   +     + N +ED   P VAA+ G ALGGG E  +    R+A+P  +
Sbjct: 75  SLFAAPEEELSQWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDAR 134

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
           +GLPE  LG++PGFGGT RLPRL+G   A+E +   K + +E+  K+G +DAVV  E+L 
Sbjct: 135 IGLPETKLGIMPGFGGTVRLPRLIGADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQ 194

Query: 191 K--VSRLWA-----LDIAARRKPWIRSLHRTDKLGSLS----EAREVLKLAR-LQAKKTA 238
           +  ++ L       LD  ARR+P         KL  L     EA      A+ + A+K  
Sbjct: 195 EAALALLKQAIAGKLDWKARRQP---------KLEPLKLSKIEAMMSFTTAKGMVAQKAG 245

Query: 239 PNMPQHQACLDVIEEGIVHGGYSGVLK-EAKVFKELVMLDTSRGLVHVFFAQRATSKVPN 297
            + P     +  IE      G    L+ EAK F +L   + +R LV +F   +       
Sbjct: 246 KHYPAPMTAVKTIEAAAGL-GRDEALELEAKGFVKLAKTNVARALVGIFLNDQYVKGKAK 304

Query: 298 VTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRG 357
                 KP  V++ AV+G G+MG GIA       + V++K++N + L  G+      +  
Sbjct: 305 KLAKDAKP--VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNK 362

Query: 358 LVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHC 417
            V RGK+   K    L  ++  LDY+ F+ VD+V+EAV+E+  +K  + +E+E+      
Sbjct: 363 QVERGKIDGAKMAGVLSSIRPTLDYAGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDT 422

Query: 418 ILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGK 477
           ILA+NTSTI ++++ +     +   G HFF+P H MPL+E++R E+TS + I  ++    
Sbjct: 423 ILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVAYAS 482

Query: 478 IIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLD 536
            + K P+VV +C GF VNR  FPY      L+  G D  +ID  + + FG P+GP  LLD
Sbjct: 483 KMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRQIDKVMEKQFGWPMGPAYLLD 542

Query: 537 LAGYGVAAATSKEFDKAFPDR---SFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKP- 592
           + G   A        + FPDR    ++   +D+L ++ R G+ NGKG Y YE+  K KP 
Sbjct: 543 VVGIDTAHHAQAVMAEGFPDRMKKDYRDA-IDVLFEAKRFGQKNGKGFYRYEEDKKGKPK 601

Query: 593 ---DPSVLPIIEECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRAS 649
              DP+V  ++        ++   +     +++EI+  ++ P++NE  R LEEGIV   +
Sbjct: 602 KEVDPAVYELLAP------VVQPKR---EFSDEEIIARMMIPMINEVVRCLEEGIVASPA 652

Query: 650 DLDDASVLGMSFPSYRGGIVFWADAVG-ANYVYTSLKKWSQLYGNFFKPSRFLEERATKG 708
           + D A V G+ FP +RGG   + D +G ANYV  +  K++ L G  ++    L E A  G
Sbjct: 653 EADMALVYGLGFPPFRGGAFRYLDTLGVANYVALA-DKYAHL-GPLYQVPEGLREMAANG 710

Length = 715

>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial

 Score =  384 bits (987), Expect = e-123
 Identities = 247/733 (33%), Positives = 365/733 (49%), Gaps = 41/733 (5%)

Query: 1   MAAPRVTMEVGND-GVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNG 58
           MA      EV  D  V  I   N  VN L+  + A  K+   E  + + +K+ VL +G  
Sbjct: 10  MARTHRHYEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKP 69

Query: 59  GRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAM 118
           G F  G DI +      A +V+ +     E+    IE  +KPIVAA+ G  LGGGLELA+
Sbjct: 70  GSFVAGADIQMIAACKTAQEVTQLSQEGQEMFER-IEKSQKPIVAAISGSCLGGGLELAL 128

Query: 119 GCHARIAAP--KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 176
            CH RIA    KT LGLPE+ LG++PG GGTQRLP+L G+  A++MML  K I ++   K
Sbjct: 129 ACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTGKKIRADRAKK 188

Query: 177 LGLIDAVV-------------TSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEA 223
           +G++D +V             T E L +V+  +A  +A  +    R      K+      
Sbjct: 189 MGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVHKITQYVMT 248

Query: 224 -----REVLKLARLQAKK-TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLD 277
                ++V K A  +  K T    P     LDV+  G   G  +G   E+K F EL M  
Sbjct: 249 NPFVRQQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTF 308

Query: 278 TSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLK 337
            S+ L+ +F  Q    K       G   R V+ +AV+G GLMG+GIA   +   +  VLK
Sbjct: 309 ESKALIGLFHGQTDCKK----NKFGKPQRPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLK 364

Query: 338 EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIE 397
           +     L +G + +   +   V R K+T  + ++ L  L   LDYS FK+ DMVIEAV E
Sbjct: 365 DATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGFKNADMVIEAVFE 424

Query: 398 SVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE 457
            + LK K+  E+E   PPHCI+A+NTS + +  +   +S  +++IG H+FSP   M LLE
Sbjct: 425 DLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLE 484

Query: 458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFR 517
           I+  + TS   +   + VG    KV +VV +  GF   R   P       L+  GVD  +
Sbjct: 485 IITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGVDPKK 544

Query: 518 IDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR-SFQSP-LVDLLLKSGRNGK 575
           +D     FG P+G   L D  G  VA   +++  KAF +R    S  L+  L+K+G  G+
Sbjct: 545 LDKLTTKFGFPVGAATLADEVGVDVAEHVAEDLGKAFGERFGGGSAELLSELVKAGFLGR 604

Query: 576 ANGKGLYTYEKGSKPKPDPSVLPIIEECRRLSNIMPGGKVPIS--VTEKEIVEMILFP-V 632
            +GKG++ Y++G K     +             I+   K+P    V+  E +++ L    
Sbjct: 605 KSGKGIFIYQEGKKGSKKVN--------SDADEILAQYKLPPKAEVSSPEDIQIRLVSRF 656

Query: 633 VNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYG 692
           VNE+   LEEGI+   S+ D  +V G+ FP + GG   + D  GA+ +   ++K++  YG
Sbjct: 657 VNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKLVDKMEKYAAAYG 716

Query: 693 NFFKPSRFLEERA 705
             F P + L + A
Sbjct: 717 VQFTPCQLLLDHA 729

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737

>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB

 Score =  380 bits (977), Expect = e-122
 Identities = 230/726 (31%), Positives = 359/726 (49%), Gaps = 36/726 (4%)

Query: 3   APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
              + +    DG+A +    P  VN      +A L    +   ++  +K ++LT     F
Sbjct: 5   GKTIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAF 64

Query: 62  SGGFDINVFQKVHGAGDVSLMPDVS-VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
             G DI  F  +    D  L+  +     + N +ED   P VAA+ G+ALGGG E  +  
Sbjct: 65  IVGADITEFLGLFALPDAELIQWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLAT 124

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
             RIA    ++GLPE  LG++PGFGGT RLPR++G   A+E +   K   +E+  K+G +
Sbjct: 125 DFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAEDALKVGAV 184

Query: 181 DAVVTSEEL-------LKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLAR-L 232
           DAVVT+++L       LK +    LD  A+R+P +  L    KL  + EA      A+ +
Sbjct: 185 DAVVTADKLGAAALQLLKDAINGKLDWKAKRQPKLEPL----KLSKI-EAMMSFTTAKGM 239

Query: 233 QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT 292
            A+   P+ P     +  IE+    G    +  EAK F +L     ++ L+ +F   +  
Sbjct: 240 VAQVAGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQYV 299

Query: 293 SKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE 352
                  D   K   V++ AV+G G+MG GIA         +V+K++N   L  G+    
Sbjct: 300 KGKAKKADKIAK--DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAA 357

Query: 353 ANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKA 412
             +   V RG++T  K    L  +   L Y+ F +VD+V+EAV+E+  +K  + +E+E+ 
Sbjct: 358 KLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDIVVEAVVENPKVKAAVLAEVEQH 417

Query: 413 CPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDL 472
                ILA+NTSTI ++++ +     +   G HFF+P H MPL+E++R E++S + I  +
Sbjct: 418 VREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATV 477

Query: 473 MTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGP 531
           +     + K P+VV +C GF VNR  FPY      L+  G D  RID  + + FG P+GP
Sbjct: 478 VAYASKMGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDGADFVRIDKVMEKQFGWPMGP 537

Query: 532 FQLLDLAGYGVAAATSKEFDKAFPDRSFQS--PLVDLLLKSGRNGKANGKGLYTYEKGSK 589
             LLD+ G            + FPDR  +     +D L ++ R G+ NGKG Y YE   K
Sbjct: 538 AYLLDVVGIDTGHHAQAVMAEGFPDRMGKDGRDAIDALFEAKRLGQKNGKGFYAYEADKK 597

Query: 590 PKP----DPSVLPIIEECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIV 645
            KP    D SVL +++                   ++EI+  ++ P++NE+ R LEEGIV
Sbjct: 598 GKPKKLVDSSVLELLKPVVYEQR---------DFDDEEIIARMMIPMINETVRCLEEGIV 648

Query: 646 VRASDLDDASVLGMSFPSYRGGIVFWADAVG-ANYVYTSLKKWSQLYGNFFKPSRFLEER 704
             A++ D   V G+ FP +RGG   + D++G AN+V  +L       G  ++ +  L E 
Sbjct: 649 ATAAEADMGLVYGLGFPPFRGGAFRYLDSIGVANFV--ALADQYAELGALYQVTAKLREM 706

Query: 705 ATKGIP 710
           A  G  
Sbjct: 707 AKNGQS 712

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714

>gnl|CDD|224170 COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

 Score =  271 bits (696), Expect = 2e-85
 Identities = 118/298 (39%), Positives = 177/298 (59%), Gaps = 5/298 (1%)

Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           ++KVAVIG G+MG+GIA    L    VVLK+++ E L + +  IE N+  LV +GKLT++
Sbjct: 3   IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEE 62

Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
           +A+ AL  +    D +  KD D+VIEAV+E + LK+++F+ELE    P  ILA+NTS++ 
Sbjct: 63  EADAALARITPTTDLAALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLS 122

Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
           +  + E     +R IG HFF+P  +MPL+E++R E+TS + +  ++   K I K PVVV 
Sbjct: 123 ITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTPVVVK 182

Query: 488 NCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQLLDLAGYGVAAA 545
           +  GF VNR        A  L+  GV     ID+A+R   GLP+GPF+L DL G  V   
Sbjct: 183 DVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVMLH 242

Query: 546 TSKEFDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYE-KGSKPKPDPSVLPII 600
             K  ++   D  +    PL+  L+++GR G+ +GKG Y Y  +  KP P+ +   +I
Sbjct: 243 IMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRGEAIKPLPNEAARCLI 300

Length = 307

>gnl|CDD|202367 pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain

 Score =  209 bits (535), Expect = 1e-63
 Identities = 72/180 (40%), Positives = 113/180 (62%)

Query: 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKA 369
           KVAVIG G MG+GIA       + VVL +++ E L K    IE ++  LV +G++T++ A
Sbjct: 1   KVAVIGAGTMGAGIAQVFARAGLEVVLVDISEEALEKARARIEKSLARLVEKGRITEEDA 60

Query: 370 NNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429
           +  L  +    D ++  D D+VIEAV E++ LK+++F+EL+   PP  ILA+NTS++ + 
Sbjct: 61  DAVLARISFTTDLADAVDADLVIEAVPENLDLKRELFAELDAIAPPDAILASNTSSLSIT 120

Query: 430 IVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC 489
            +   T   +R IG HFF+P  +MPL+E+VR E+TS + +  ++ + K I K PVVV + 
Sbjct: 121 ELAAATKRPERFIGLHFFNPPPLMPLVEVVRGEKTSPETVATVVALAKKIGKTPVVVKDV 180

This family also includes lambda crystallin. Length = 180

>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional

 Score =  212 bits (541), Expect = 1e-63
 Identities = 95/226 (42%), Positives = 129/226 (57%), Gaps = 7/226 (3%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           M    V +E   D VA+ITL +PP NAL+  ++  L +  ++    D+V+ +V+ G G  
Sbjct: 1   MKFLSVRVE---DHVAVITLNHPPANALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRF 57

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FS G DI  F  V  A   + +  +  ++    +E   KP++AA+ G ALGGGLELAM C
Sbjct: 58  FSAGADIKEFTSVTEAEQATELAQLG-QVTFERVEKFSKPVIAAIHGAALGGGLELAMSC 116

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
           H R A    +LGLPEL LG+IPGF GTQRLPR VG +KA+EMML S+ IT  E  K GL+
Sbjct: 117 HIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAEALKWGLV 176

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRS---LHRTDKLGSLSEA 223
           + V   E LL  ++  A  IA +     R+   L +T K  S  E 
Sbjct: 177 NGVFPEETLLDDAKKLAKKIAGKSPATTRAVLELLQTTKSSSYYEG 222

Length = 257

>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

 Score =  198 bits (506), Expect = 2e-59
 Identities = 81/190 (42%), Positives = 117/190 (61%), Gaps = 1/190 (0%)

Query: 12  NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           + GVA ITL  P   NAL++ ++  L    +EA +  DV+ +VLTG G  F  G D+   
Sbjct: 6   DGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKEL 65

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
             +  AG+ +      ++ ++  +    KP++AAV G ALGGGLELA+ C  RIAA   +
Sbjct: 66  AALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAK 125

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
            GLPE+ LG++PG GGTQRLPRLVG ++A E++L  + I++EE  +LGL+D VV  EELL
Sbjct: 126 FGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEVVPDEELL 185

Query: 191 KVSRLWALDI 200
             +   A  +
Sbjct: 186 AAALELARRL 195

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195

>gnl|CDD|180269 PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  201 bits (514), Expect = 2e-59
 Identities = 101/282 (35%), Positives = 154/282 (54%), Gaps = 5/282 (1%)

Query: 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQ 366
           G++K+ VIG G MG+GIA    +    VV+ +++   + +G+ TI  ++  LV +GK+T+
Sbjct: 2   GIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTE 61

Query: 367 DKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 426
                AL  + G  D  + KD D+VIEA  E++ LK+KIF++L++   P  ILATNTS++
Sbjct: 62  ADKEAALARITGTTDLDDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSL 121

Query: 427 DLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV 486
            +  +   T   D++IG HFF+P  VM L+EI+R   TS      +  + K I K PV V
Sbjct: 122 SITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSDATHEAVEALAKKIGKTPVEV 181

Query: 487 GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIRSFGL--PIGPFQLLDLAGYGVA 543
            N  GF VNR   P    A  +++ GV     ID  ++  G   PIGP  L DL G    
Sbjct: 182 KNAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMK-LGCNHPIGPLALADLIGLDTC 240

Query: 544 AATSKEFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTY 584
            A  +   + F D  ++  PL+  ++ +G  G+  G+G Y Y
Sbjct: 241 LAIMEVLYEGFGDSKYRPCPLLRKMVAAGWLGRKTGRGFYDY 282

Length = 282

>gnl|CDD|215300 PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydrogenase

 Score =  189 bits (483), Expect = 7e-55
 Identities = 92/288 (31%), Positives = 153/288 (53%), Gaps = 3/288 (1%)

Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           ++KV V+G G MGSGIA       + V L + +   L +G+ +I +++  LV +GK++Q+
Sbjct: 4   IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQE 63

Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
           +A+  L  ++   +  E +D D +IEA++ES  LK+K+FSEL++ C P  ILA+NTS+I 
Sbjct: 64  EADATLGRIRCTTNLEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS 123

Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
           +  +   T    ++IG HF +P  +M L+EI+R   TS +V      + +   K  V   
Sbjct: 124 ITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSDEVFDATKALAERFGKTVVCSQ 183

Query: 488 NCTGFAVNRAFFPYSQSARLLVSLGVDVFR-IDSAIR-SFGLPIGPFQLLDLAGYGVAAA 545
           +  GF VNR   P    A   +  GV     ID+ ++     P+GP  L D  G     +
Sbjct: 184 DYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKLGTNHPMGPLHLADFIGLDTCLS 243

Query: 546 TSKEFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTYEKGSKPKP 592
             K   +   D  ++  PL+   + +GR G+ +G+G+Y Y+   +  P
Sbjct: 244 IMKVLHEGLGDSKYRPCPLLVQYVDAGRLGRKSGRGVYHYDGKKRGDP 291

Length = 295

>gnl|CDD|188207 TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehydrogenase PaaC

 Score =  190 bits (483), Expect = 9e-53
 Identities = 107/290 (36%), Positives = 161/290 (55%), Gaps = 5/290 (1%)

Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V  VAVIG G MG+GIA         V+L ++ +E L + I  IEA +  LVT+GKLT +
Sbjct: 5   VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAE 64

Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
           +    LK L  V D     D  +VIEA++E++ +K+ +F++LE+ CP   I+A+NTS++ 
Sbjct: 65  ECERTLKRLIPVTDLHALADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLS 124

Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
           +  +    +  +R+ G HFF+PA VM L+E+V    T+A+V   L        K PV   
Sbjct: 125 ITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAAEVAEQLYETALAWGKQPVHCH 184

Query: 488 NCTGFAVNRAFFP-YSQSARLLVSLGVDVFRIDSAIR-SFGLPIGPFQLLDLAGYGVA-A 544
           +  GF VNR   P Y+++ R L         +D+A+R   G P+GPF+L DL G+ V  A
Sbjct: 185 STPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVNFA 244

Query: 545 ATSKEFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTY-EKGSKPKP 592
            T   F+  + DR F  S +   L+ +GR G+ +G G+Y Y E+     P
Sbjct: 245 VTCSVFNAFWQDRRFLPSLVQQELVIAGRLGRKSGLGVYDYREEAEAVVP 294

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. Length = 503

>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family

 Score =  178 bits (454), Expect = 2e-51
 Identities = 84/192 (43%), Positives = 114/192 (59%), Gaps = 3/192 (1%)

Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
             GVA+I L  P  VNAL+  ++  L    E+      VKAIVLTG  G FS G DI   
Sbjct: 5   EAGVAVIKLDRPEAVNALSAELLTELIQALEKLEQDPSVKAIVLTGGPGAFSAGADIKEM 64

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
                A           + + + +ED  KP++AAV G ALGGGLELA+ C  RIAA   +
Sbjct: 65  AAEPLAQQAQFSL--EAQDLWSRLEDLPKPVIAAVNGYALGGGLELALACDYRIAADNAK 122

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
            GLPE+ LG+IPG GGTQRLPR++G+S A+EM+L  + I ++E  K+GL+D VV  E+L+
Sbjct: 123 FGLPEVKLGIIPGAGGTQRLPRIIGVSAALEMLLTGRRIRAQEALKMGLVDKVVPEEQLV 182

Query: 191 KVSRLWALDIAA 202
           + +   A  +A 
Sbjct: 183 EEAIELAQRLAD 194

This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245

>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

 Score =  179 bits (455), Expect = 2e-51
 Identities = 89/230 (38%), Positives = 129/230 (56%), Gaps = 5/230 (2%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DG+A+ITL  P   NAL + ++  L +  +EA +  DV+ +VLTG G  FS G D+    
Sbjct: 13  DGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELL 72

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
                     +     + ++  + D  KP++AAV G ALGGGLELA+ C  RIAA   + 
Sbjct: 73  SPEDGNAAENLMQPGQD-LLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKF 131

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT-SEELL 190
           GLPE+ LG++PG GGTQRLPRL+G  +A E++L  + I++ E  +LGL+D VV  +EELL
Sbjct: 132 GLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDEVVPDAEELL 191

Query: 191 KVSRLWALDIAARRK--PWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238
           + +   A  +AA        + L R      L+EA E   LA  +   + 
Sbjct: 192 ERALELARRLAAPPLALAATKRLVRAALEADLAEALEAEALAFARLFSSE 241

Length = 257

>gnl|CDD|236211 PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated

 Score =  180 bits (460), Expect = 2e-49
 Identities = 103/314 (32%), Positives = 162/314 (51%), Gaps = 4/314 (1%)

Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           +  VAVIG G MG+GIA         V+L +  +         I A +  LV +GKLT +
Sbjct: 7   IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAE 66

Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
           +A+ AL  L+ V   ++  D D+V+EA++E + +KQ +F++LE    P CILATNTS++ 
Sbjct: 67  QADAALARLRPVEALADLADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLS 126

Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
           +  +       +R+ G HFF+P  +M L+E+V    T   V   L  + +   K PV   
Sbjct: 127 ITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATDPAVADALYALARAWGKTPVRAK 186

Query: 488 NCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQLLDLAGYGVA-A 544
           +  GF VNRA  PY   A  ++  GV D   ID+ +R + G  +GPF+L+DL G  V  A
Sbjct: 187 DTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLDVNHA 246

Query: 545 ATSKEFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEEC 603
                + + + +  F+ S +   L+ +GR G+ +G+G Y Y  G+K  P  +  P     
Sbjct: 247 VMESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGFYRYADGAKQPPAEAAPPAALPP 306

Query: 604 RRLSNIMPGGKVPI 617
             +S  + G    +
Sbjct: 307 VWVSADVEGDLAAL 320

Length = 507

>gnl|CDD|236434 PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  166 bits (422), Expect = 2e-46
 Identities = 91/283 (32%), Positives = 136/283 (48%), Gaps = 3/283 (1%)

Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           + K+ V+G G+MG GIA    ++     L ++  E L    + I +     V RGKLT+ 
Sbjct: 1   IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEA 60

Query: 368 KANNALKMLKGVLDYSE-FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 426
               AL  L   LD      D D+VIEAV E + LK+ +F   +   P  C +ATNTST+
Sbjct: 61  ARQAALARLSYSLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTM 120

Query: 427 DLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV 486
               +   T   +R+I  HFF+P H M L+E++R   TS + +     V + + K  VVV
Sbjct: 121 SPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSDETVQVAKEVAEQMGKETVVV 180

Query: 487 GNCTGFAVNRAFFPYSQSARLLVSLGVDVFR-IDSAIR-SFGLPIGPFQLLDLAGYGVAA 544
               GF  +R        A  ++  GV     ID AIR     P+GP +L DL G     
Sbjct: 181 NEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRLGLNFPMGPLELGDLVGLDTRL 240

Query: 545 ATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKG 587
              K   +   ++   +PL++  +K+GR G+  G+G+Y Y   
Sbjct: 241 NNLKYLHETLGEKYRPAPLLEKYVKAGRLGRKTGRGVYDYTNR 283

Length = 288

>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional

 Score =  162 bits (413), Expect = 2e-45
 Identities = 72/191 (37%), Positives = 101/191 (52%), Gaps = 4/191 (2%)

Query: 13  DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DGV  IT+  P   NAL   +   L D  E A +   V+ +VLTG G  FS G DI  F 
Sbjct: 13  DGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFP 72

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
           K        L P   V   +  I    KP+VAAV G A+G G+ LA+ C    A+   + 
Sbjct: 73  KAPPKPPDELAP---VNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKF 129

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
            LP   LG+ P  GG+  LPRL+G ++A EM+LL + +++EE  ++GL++ VV + EL  
Sbjct: 130 SLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEEALRIGLVNRVVPAAELDA 189

Query: 192 VSRLWALDIAA 202
            +   A  +AA
Sbjct: 190 EADAQAAKLAA 200

Length = 259

>gnl|CDD|181133 PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  163 bits (415), Expect = 2e-45
 Identities = 96/284 (33%), Positives = 150/284 (52%), Gaps = 7/284 (2%)

Query: 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQ 366
            +++V V+G G MG+GIA       + V++ E   E    G   IE ++   V+RGKLT+
Sbjct: 4   AIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTE 63

Query: 367 DKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACP-PHCILATNTST 425
            + + AL  L+   D  +F D  +VIEAV+E   +K +IF+EL+K    P  +LA+NTS+
Sbjct: 64  RERDAALARLRFTTDLGDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSS 123

Query: 426 IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMT-VGKIIKKVPV 484
           I +  +   T    R++G HFF+P  V+PL+E+V T  TS   +         ++ K  V
Sbjct: 124 IPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVTSEATVARAEEFASDVLGKQVV 183

Query: 485 VVGNCTGFAVNRAFFPYSQSA-RLLVSLGVDVFRIDSAIRSFGL--PIGPFQLLDLAGYG 541
              + +GF VN    PY  SA R++ S       ID A+   G   P+GP +L DL G  
Sbjct: 184 RAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMV-LGCAHPMGPLRLSDLVGLD 242

Query: 542 VAAATSKEFDKAFPDRSFQSP-LVDLLLKSGRNGKANGKGLYTY 584
              A +    + F +  +  P L+  ++++G  GK +G+G YTY
Sbjct: 243 TVKAIADSMYEEFKEPLYAPPPLLLRMVEAGLLGKKSGRGFYTY 286

Length = 286

>gnl|CDD|180361 PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenase; Validated

 Score =  158 bits (400), Expect = 2e-43
 Identities = 79/237 (33%), Positives = 131/237 (55%), Gaps = 5/237 (2%)

Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEAN---VRGLVTRGKL 364
           ++ + V+G G+MG GIA         V + +V+ E L   ++ IE+    +R LV +GK+
Sbjct: 3   IKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKM 62

Query: 365 TQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424
           ++D+A   +  ++    Y    D D ++EAV E + LK+K+F+ELE+   P  I+A+NTS
Sbjct: 63  SEDEAKAIMARIRTSTSYESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTS 122

Query: 425 TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPV 484
            I +  +      +DR IG H+F+PA VM L+E+VR   TS +     + + K I K+P+
Sbjct: 123 GIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAALTSEETFNTTVELSKKIGKIPI 182

Query: 485 VVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFR-IDSAIR-SFGLPIGPFQLLDLAG 539
            V +  GF   R    +   A     +G+   + ID   + +FG P+GPF+L+D+ G
Sbjct: 183 EVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIG 239

Length = 291

>gnl|CDD|235707 PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  151 bits (383), Expect = 1e-40
 Identities = 89/284 (31%), Positives = 144/284 (50%), Gaps = 10/284 (3%)

Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           ++ +A+IG G MGSGIA       + VVL +V    L +    IE    G V        
Sbjct: 4   IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERA-LG-VYAPLGIAS 61

Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
                ++M  G+         D+VIEAV E + LK+ +F+ L+  C P  I ATNTS + 
Sbjct: 62  AGMGRIRMEAGLAA--AVSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLP 119

Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
           +  + +  +  +R +G HFF+PA V+PL+E+VR ++TS Q +   M + + I K PV+V 
Sbjct: 120 ITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTSPQTVATTMALLRSIGKRPVLVK 179

Query: 488 -NCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPI---GPFQLLDLAGYG 541
            +  GF  NR     ++ A  L+  GV     ID  ++ S G+ +   GP +  D+ G  
Sbjct: 180 KDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMNGLD 239

Query: 542 VAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 585
           V  A +    +   +R+  SPL++  +++G  G  +G+G Y + 
Sbjct: 240 VHLAVASYLYQDLENRTTPSPLLEEKVEAGELGAKSGQGFYAWP 283

Length = 311

>gnl|CDD|181018 PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  149 bits (378), Expect = 3e-40
 Identities = 95/292 (32%), Positives = 144/292 (49%), Gaps = 12/292 (4%)

Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           ++KV VIG G MG+GIA    L    V+L +V+++ L  G+ TI  N+   V +GK++++
Sbjct: 4   IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEE 63

Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACP---PHCILATNTS 424
               AL  +    D  +  D D+VIEA  E   +K+KIF++L   CP   P  ILATNTS
Sbjct: 64  ARAAALARISTATDLEDLADCDLVIEAATEDETVKRKIFAQL---CPVLKPEAILATNTS 120

Query: 425 TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPV 484
           +I +  +   T   +R IG HF +P  VM L+E++R   T              + K   
Sbjct: 121 SISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDEATFEAAKEFVTKLGKTIT 180

Query: 485 VVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIRSFGL--PIGPFQLLDLAGYG 541
           V  +   F VNR   P    A   +  GV  V  ID+A++  G   P+GP +L D  G  
Sbjct: 181 VAEDFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMK-LGANHPMGPLELADFIGLD 239

Query: 542 VAAATSKEFDKAFPDRSFQS-PLVDLLLKSGRNGKANGKGLYTYEKGSKPKP 592
              +  +       D  ++  PL+   +++G  G+  G+G Y Y +G  P P
Sbjct: 240 TCLSIMQVLHDGLADSKYRPCPLLVKYVEAGWLGRKTGRGFYDY-RGEVPVP 290

Length = 292

>gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional

 Score =  146 bits (371), Expect = 1e-39
 Identities = 73/206 (35%), Positives = 119/206 (57%), Gaps = 20/206 (9%)

Query: 6   VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSG 63
           ++++     V  ITL  P   NAL++ ++  L++   +     +V+ ++LTG G + F  
Sbjct: 5   ISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCA 64

Query: 64  GFDI------NVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELA 117
           G D+      N  Q  H    VSL     +   + ++E   +P++AA+ G+ALGGGLELA
Sbjct: 65  GADLKERAGMNEEQVRHA---VSL-----IRTTMEMVEQLPQPVIAAINGIALGGGLELA 116

Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
           + C  RIAA    LGL E TL +IPG GGTQRLPRL+G+ +A E++   + I+++E  ++
Sbjct: 117 LACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEI 176

Query: 178 GLIDAVVTSEELLKVSRLWALDIAAR 203
           GL++ VV +  L +     A++IA +
Sbjct: 177 GLVEFVVPAHLLEEK----AIEIAEK 198

Length = 260

>gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional

 Score =  144 bits (366), Expect = 5e-39
 Identities = 78/204 (38%), Positives = 105/204 (51%), Gaps = 9/204 (4%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
            A   V +E   DGVA++ L  P   NAL + +   L + F E +   D++AIVLTG   
Sbjct: 4   TATDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEK 63

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F+ G DI  F    GA ++ L      E     I  C KP++AAV G ALGGG ELAM 
Sbjct: 64  VFAAGADIKEFATA-GAIEMYLR---HTERYWEAIAQCPKPVIAAVNGYALGGGCELAMH 119

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
               +A      G PE+ +G++PG GGTQRL R VG  KA+ M L    + + E   +GL
Sbjct: 120 ADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPEALAIGL 179

Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
           +  VV  E+ L      AL++A  
Sbjct: 180 VSEVVEDEQTLPR----ALELARE 199

Length = 261

>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated

 Score =  144 bits (365), Expect = 7e-39
 Identities = 81/214 (37%), Positives = 120/214 (56%), Gaps = 30/214 (14%)

Query: 8   MEVGN------DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           ME+ N        +A++T IN P  +NAL    +  L    ++  + D+V A++LTG G 
Sbjct: 1   MELKNVILEKEGHIAVVT-INRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGE 59

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVE----------LVVNLIEDCKKPIVAAVEGLA 109
           +    F       V GA D+S M D++ E           V   +E+  KP++AA+ G A
Sbjct: 60  K---AF-------VAGA-DISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAINGFA 108

Query: 110 LGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169
           LGGG EL+M C  RIA+ K + G PE+ LG+ PGFGGTQRL R+VG  KA E++     I
Sbjct: 109 LGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMI 168

Query: 170 TSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR 203
            +EE  ++GL++ VV  E+L++ ++  A  IAA 
Sbjct: 169 NAEEALRIGLVNKVVEPEKLMEEAKALANKIAAN 202

Length = 260

>gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional

 Score =  131 bits (331), Expect = 3e-34
 Identities = 71/197 (36%), Positives = 106/197 (53%), Gaps = 9/197 (4%)

Query: 13  DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
             V +ITL  P  +NAL   ++  L        + + + AIV+TG+   F+ G DI    
Sbjct: 12  GRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMA 71

Query: 72  KVHGAGDVSLMPDVSVELVVNL--IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
                 D+S M     + + N   +   +KP++AAV G ALGGG ELAM C   IAA   
Sbjct: 72  ------DLSFMDVYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTA 125

Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
           + G PE+ LGV+PG GG+QRL R VG +KA+++ L  + + + E  + GL+  VV +++L
Sbjct: 126 KFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRVVPADKL 185

Query: 190 LKVSRLWALDIAARRKP 206
           L  +   A  IA+   P
Sbjct: 186 LDEALAAATTIASFSLP 202

Length = 257

>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional

 Score =  130 bits (328), Expect = 7e-34
 Identities = 76/206 (36%), Positives = 109/206 (52%), Gaps = 12/206 (5%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           MA P  T+E     V I+TL  P V NAL +     L++ F++  +  +    ++TG G 
Sbjct: 1   MALPFSTVE-RKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGD 59

Query: 60  R-FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE--DCKKPIVAAVEGLALGGGLEL 116
           + FS G D+    K   AG     P+        L    D  KPI+AAV G+A+GGG EL
Sbjct: 60  KAFSAGNDL----KEQAAGGKRGWPESGF---GGLTSRFDLDKPIIAAVNGVAMGGGFEL 112

Query: 117 AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 176
           A+ C   +AA      LPE  +G+    GG  RLPR +GL +A+ M+L  + +T+ EG +
Sbjct: 113 ALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVTAREGLE 172

Query: 177 LGLIDAVVTSEELLKVSRLWALDIAA 202
           LG ++ VV + ELL  +  WA DI A
Sbjct: 173 LGFVNEVVPAGELLAAAERWADDILA 198

Length = 259

>gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional

 Score =  127 bits (322), Expect = 3e-33
 Identities = 71/192 (36%), Positives = 106/192 (55%), Gaps = 9/192 (4%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
             V ++TL  P   NAL   ++  L ++ E A +   +   V+TGN   F+ G D+N   
Sbjct: 10  QRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMA 69

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
           +   A     + D   +L    ++   KP++AAV G ALG G ELA+ C   IA    + 
Sbjct: 70  EKDLAA---TLNDPRPQLWQR-LQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARF 125

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
           GLPE+TLG++PG GGTQRL R VG S A +M+L  +SIT+++  + GL+  V   E  L 
Sbjct: 126 GLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSEVFPPE--LT 183

Query: 192 VSRLWALDIAAR 203
           + R  AL +A++
Sbjct: 184 LER--ALQLASK 193

Length = 255

>gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional

 Score =  128 bits (323), Expect = 4e-33
 Identities = 75/199 (37%), Positives = 112/199 (56%), Gaps = 14/199 (7%)

Query: 13  DGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
           DG+A++TL  P  +NAL   ++  L  + +     + V+A++LTG G R FS G DI+ F
Sbjct: 11  DGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEF 70

Query: 71  QKVHGAGDVSLMPDVSVELVV-------NLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
                +  V+   DV++   V         +E   KP++AAV GLA GGG E+    H  
Sbjct: 71  -----SASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLA 125

Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           IA+ +     PE+ LG+ P FGGTQRLPRL G  +A+E++L   + ++E   ++GL++AV
Sbjct: 126 IASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLVNAV 185

Query: 184 VTSEELLKVSRLWALDIAA 202
           V  EELL  +R  A  I  
Sbjct: 186 VPHEELLPAARALARRIIR 204

Length = 260

>gnl|CDD|181359 PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  124 bits (314), Expect = 1e-31
 Identities = 84/286 (29%), Positives = 130/286 (45%), Gaps = 11/286 (3%)

Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQ- 366
           ++ V V G G++GS IA     +   V + +++ E L K  + I       V   + T+ 
Sbjct: 3   IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKE 62

Query: 367 DKANNALKMLKGVLDYSE-FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425
             A  AL  +    D +E  KD D+VIEAV E   +K   + EL K  P   I ATN+ST
Sbjct: 63  APAEAALNRITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST 122

Query: 426 IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVV 485
           +  +   E T   ++ +  HF +        EI+    T  +V   ++   K I  VP+V
Sbjct: 123 LLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIV 182

Query: 486 VGN-CTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQLLDLAGYGV 542
           +     G+ +N    P+  +A  L + GV D   ID     + G P+GPF +LD+ G   
Sbjct: 183 LKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVGLDT 242

Query: 543 AAATSKEFDKAFPDRSFQSPLVDLLLK----SGRNGKANGKGLYTY 584
           A   +  + +A  D + +      LLK     G+ G A G+G Y Y
Sbjct: 243 AYNITSNWAEATDDENAKK--AAALLKEYIDKGKLGVATGEGFYNY 286

Length = 287

>gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional

 Score =  123 bits (311), Expect = 1e-31
 Identities = 71/192 (36%), Positives = 104/192 (54%), Gaps = 5/192 (2%)

Query: 13  DGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
           D VA++TL NPPVNAL+  +   L   F+E + R DV+ +VLTG G  F  G D+     
Sbjct: 12  DHVAVVTLDNPPVNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPD 71

Query: 73  VH-GAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
           V  G GD+      + E   + I +C KP++AAV G ALG GL L   C   +A+     
Sbjct: 72  VIKGPGDLRAHNRRTRE-CFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVF 130

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
           GLPE+ +G+    GG +   RL G S    MML    + + E ++ G+I+A +  EEL+ 
Sbjct: 131 GLPEIDVGLA---GGGKHAMRLFGHSLTRRMMLTGYRVPAAELYRRGVIEACLPPEELMP 187

Query: 192 VSRLWALDIAAR 203
            +   A +IA++
Sbjct: 188 EAMEIAREIASK 199

Length = 257

>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional

 Score =  119 bits (301), Expect = 3e-30
 Identities = 61/220 (27%), Positives = 104/220 (47%), Gaps = 10/220 (4%)

Query: 13  DGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
            G+  IT  NP   NA+++ +   L      A   D ++ +VLTG G + F  G DI+ F
Sbjct: 19  GGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQF 78

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
           ++     +     + +VE     + D  KP +A + G  +GGG+ +A+ C  RIAA  ++
Sbjct: 79  EESRSDAEAVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSR 138

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
            G+P   LG+  G+ G + L  LVG S A ++   ++   + E  ++GL+  V  +++L 
Sbjct: 139 FGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAEALRIGLVHRVTAADDLE 198

Query: 191 KVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLA 230
                +A  IA      +R+  R           E+LK  
Sbjct: 199 TALADYAATIAGNAPLTLRAAKRA--------IAELLKDE 230

Length = 269

>gnl|CDD|236373 PRK09076, PRK09076, enoyl-CoA hydratase; Provisional

 Score =  118 bits (297), Expect = 1e-29
 Identities = 71/196 (36%), Positives = 104/196 (53%), Gaps = 19/196 (9%)

Query: 15  VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF-SGGFDINVFQKV 73
           VAI+TL NPP N      +  LK    E  +  DV A+V+TG+G +F S G D+N+F   
Sbjct: 13  VAILTLNNPPANTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLF--- 69

Query: 74  HGAGDVSLMPDVSVELVVNLIE------DCKKPIVAAVEGLALGGGLELAMGCHARIAAP 127
              GD      V+ E+     E        +   +AA+ G A+GGGLE A+ C  RIA  
Sbjct: 70  -ADGD----KAVAREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEE 124

Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
           + Q+ LPE ++G++P  GGTQ LP LVG   A  M+L  + + +    ++GL++ VV   
Sbjct: 125 QAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERVDAATALRIGLVEEVVEKG 184

Query: 188 ELLKVSRLWALDIAAR 203
           E    +R  AL +A +
Sbjct: 185 E----AREAALALAQK 196

Length = 258

>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional

 Score =  110 bits (276), Expect = 6e-27
 Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 7/201 (3%)

Query: 13  DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           D V  +TL N P   NAL+  +   L     EA + DDV  +VLTG    F  G D+   
Sbjct: 12  DRVRTLTL-NRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDL--- 67

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
            K  G    +     ++          +KP++ A+ G A+ GGLELA+ C   IA+ + +
Sbjct: 68  -KELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERAR 126

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
                  +G++PG+G + RLP+ VG+ +A  M L    + + +  + GL+  VV  +ELL
Sbjct: 127 FADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGLVTEVVPHDELL 186

Query: 191 KVSRLWALDIAARRKPWIRSL 211
             +R  A  IA      +R+L
Sbjct: 187 PRARRLAASIAGNNPAAVRAL 207

Length = 258

>gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional

 Score =  108 bits (273), Expect = 1e-26
 Identities = 67/194 (34%), Positives = 104/194 (53%), Gaps = 11/194 (5%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           + GVA I L  P   NAL   ++A L+  F      + V+A+VL G G  F  G D++  
Sbjct: 9   DGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSEL 66

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
           ++   AG+  +        V + I+  + P++AA+ G  +GGGLELA   H R+A   T 
Sbjct: 67  RE-RDAGEG-MHHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTY 124

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV-TSEEL 189
             LPE   G+  G GG+ R+PRL+G+++  +MML  +   ++EG +LGL   +V   E L
Sbjct: 125 FALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQEGERLGLAQYLVPAGEAL 184

Query: 190 LKVSRLWALDIAAR 203
            K     A+++A R
Sbjct: 185 DK-----AMELARR 193

Length = 255

>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional

 Score =  109 bits (274), Expect = 2e-26
 Identities = 71/202 (35%), Positives = 100/202 (49%), Gaps = 20/202 (9%)

Query: 13  DGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DGVA ITL  P   N L     A L+D F E    DDVKA+VLTG GG F  G D     
Sbjct: 25  DGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGD----- 79

Query: 72  KVHGA-GDVSLMPDVSVEL---------VVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
            VH   G ++ M     EL         +V  +  C +PI+AAV+G+  G G  LAM   
Sbjct: 80  -VHEIIGPLTKMD--MPELLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASD 136

Query: 122 ARIAAPKTQLGLPELTLGVIPG-FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
            R+  P  +       +G+     G    LPR++G  +A E++   +S+++EEG + G  
Sbjct: 137 LRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASELLYTGRSMSAEEGERWGFF 196

Query: 181 DAVVTSEELLKVSRLWALDIAA 202
           + +V  EELL  ++  A  +AA
Sbjct: 197 NRLVEPEELLAEAQALARRLAA 218

Length = 277

>gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional

 Score =  107 bits (270), Expect = 4e-26
 Identities = 56/192 (29%), Positives = 93/192 (48%), Gaps = 5/192 (2%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
            +   + +EV   G+A IT   P   NA+   +  GL +  E   +   ++A+VL G G 
Sbjct: 5   TSTDELLLEV-RGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGD 63

Query: 60  R-FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAM 118
           + F  G DI  F+    A D ++  +  ++ V+  +E  + P +AA+ G  +GGG  +A 
Sbjct: 64  KAFVAGTDIAQFRAFSTAED-AVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAA 122

Query: 119 GCHARIAAPKTQLGLP-ELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
            C  RIA P  + G P   TLG         RL  L+G ++  +M+  ++ + +EE    
Sbjct: 123 ACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARVKDMLFTARLLEAEEALAA 182

Query: 178 GLIDAVVTSEEL 189
           GL++ VV    L
Sbjct: 183 GLVNEVVEDAAL 194

Length = 262

>gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional

 Score =  106 bits (268), Expect = 6e-26
 Identities = 67/203 (33%), Positives = 99/203 (48%), Gaps = 10/203 (4%)

Query: 2   AAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
            +  V +E     V IIT+  P   NA+   +  GL    +E  +  D+   +LTG GG 
Sbjct: 1   MSDEVLVER-RGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGT 59

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE-DCKKPIVAAVEGLALGGGLELAMG 119
           F  G D+  F      G+    P +       L E   +KP++AAVEG AL GG ELA+ 
Sbjct: 60  FCAGMDLKAF----ARGE---RPSIPGRGFGGLTERPPRKPLIAAVEGYALAGGFELALA 112

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
           C   +AA   + GLPE+  G++   GG  RLPR +    A+E+ L    +T+E   +LGL
Sbjct: 113 CDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELGL 172

Query: 180 IDAVVTSEELLKVSRLWALDIAA 202
           ++ +    + L  +   A  IAA
Sbjct: 173 VNRLTEPGQALDAALELAERIAA 195

Length = 254

>gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional

 Score =  106 bits (267), Expect = 1e-25
 Identities = 70/217 (32%), Positives = 106/217 (48%), Gaps = 13/217 (5%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           MA   V  EV + GVA+ITL  P  +NA    + A +    + A +   V+ IVLTG G 
Sbjct: 2   MAYDAVLYEVADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGR 61

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIED----------CKKPIVAAVEGLA 109
            F  G D+   Q +    D     DV    V N   D           +KP++AA+ G  
Sbjct: 62  GFCAGADMGELQTI-DPSDGRRDTDVR-PFVGNRRPDYQTRYHFLTALRKPVIAAINGAC 119

Query: 110 LGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169
            G GL  A+ C  R AA   +        G+I   G +  LPRLVG + A++++L +++ 
Sbjct: 120 AGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRLVGHANALDLLLSARTF 179

Query: 170 TSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKP 206
            +EE  +LGL++ VV  +EL++ +  +A D+A    P
Sbjct: 180 YAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSP 216

Length = 272

>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional

 Score =  106 bits (266), Expect = 1e-25
 Identities = 60/197 (30%), Positives = 99/197 (50%), Gaps = 9/197 (4%)

Query: 14  GVAIITLINPPV-NALAIP-IVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
            +  +T+  P   NAL+    V  L        +   V+A++LTG G  FS G ++   +
Sbjct: 12  HIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMR 71

Query: 72  KVHGAGDVSLMPDV------SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
              GA   S   D+       ++ +   + + + P++AAV G A+G G +LA  C  RIA
Sbjct: 72  ARVGAFGGSPA-DIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIA 130

Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
           +   +     + LG+IPG GG   LPR++G+++A EM     +I +    + GL+  VV 
Sbjct: 131 SETARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAIDAATALEWGLVSRVVP 190

Query: 186 SEELLKVSRLWALDIAA 202
           +++LL  +R  A  IAA
Sbjct: 191 ADQLLPAARALAERIAA 207

Length = 266

>gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase

 Score =  106 bits (266), Expect = 1e-25
 Identities = 67/190 (35%), Positives = 104/190 (54%), Gaps = 8/190 (4%)

Query: 14  GVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           G+A IT IN P  +NAL  P++  L   F+     D VK I+LTG+G  F  G D+   +
Sbjct: 19  GIATIT-INRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAE 77

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
           +V   GDV    DV  + V  + E C+KPI+ A+ G A+  G E+A+ C   +A+   + 
Sbjct: 78  EVF-KGDVK---DVETDPVAQM-ERCRKPIIGAINGFAITAGFEIALACDILVASRGAKF 132

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
                  G+ P +G +Q+L R++G ++A E+ L +  +T+E   + GL++ VV   ELLK
Sbjct: 133 IDTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLTAETAERWGLVNHVVEESELLK 192

Query: 192 VSRLWALDIA 201
            +R  A  I 
Sbjct: 193 KAREVAEAII 202

Length = 265

>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase

 Score =  104 bits (260), Expect = 6e-25
 Identities = 65/192 (33%), Positives = 102/192 (53%), Gaps = 8/192 (4%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINV 69
           + G+  + L  P   NA+   ++ GL+  FE+  +    + ++L  +  G F  G D+  
Sbjct: 2   DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKE 61

Query: 70  FQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
            ++     +V    + S+    + +E    P +A VEG ALGGGLELA+ C  RI   + 
Sbjct: 62  -RRKMSPSEVQKFVN-SLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEA 119

Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
             GLPE  L +IPG GGTQRLPRLVG S+A E++   + I + E   +GL++  V + E 
Sbjct: 120 VFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLVNYCVPAGE- 178

Query: 190 LKVSRLWALDIA 201
              +   AL++A
Sbjct: 179 ---AYEKALELA 187

Length = 251

>gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional

 Score =  102 bits (257), Expect = 5e-24
 Identities = 69/213 (32%), Positives = 103/213 (48%), Gaps = 20/213 (9%)

Query: 12  NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDI--- 67
            DG+A ITL  P  +NA  + +   L + F+ A + D V+A+++TG G  F  G D+   
Sbjct: 11  ADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAG 70

Query: 68  -NVF----QKVHGAGDVSLMPDVSVELV------VNL-IEDCKKPIVAAVEGLALGGG-- 113
            N F     +     D     D S + V      V L I D  KP++AAV G A+G G  
Sbjct: 71  GNTFDLDAPRTPVEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGAT 130

Query: 114 LELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEE 173
           + LAM    R+A+   + G      G++P    +  LPRLVGL  A+E +   +   ++E
Sbjct: 131 MTLAM--DIRLASTAARFGFVFGRRGIVPEAASSWFLPRLVGLQTALEWVYSGRVFDAQE 188

Query: 174 GWKLGLIDAVVTSEELLKVSRLWALDIAARRKP 206
               GL+ +V   +ELL  +R  A +IA    P
Sbjct: 189 ALDGGLVRSVHPPDELLPAARALAREIADNTSP 221

Length = 296

>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional

 Score =  101 bits (253), Expect = 6e-24
 Identities = 59/196 (30%), Positives = 93/196 (47%), Gaps = 12/196 (6%)

Query: 12  NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
           N  +  ITL  P  NA+       + + F       +++  ++TG G + FS G+D+   
Sbjct: 10  NGSILEITLDRPKANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDL--- 66

Query: 71  QKVHGAGDVSLMP--DVSVELVVNLIE--DCKKPIVAAVEGLALGGGLELAMGCHARIAA 126
            K    G+    P  D        L E  D  KP++AAV G A GGG ELA+     + A
Sbjct: 67  -KAAAEGE---APDADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCA 122

Query: 127 PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186
                 LPE  LG++P  GG  RLP+ +  + A EM++  + + +EE  + G+++ VV  
Sbjct: 123 DNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVVPQ 182

Query: 187 EELLKVSRLWALDIAA 202
            EL+  +R  A  +  
Sbjct: 183 AELMDRARELAQQLVN 198

Length = 261

>gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid synthetase)

 Score =  101 bits (253), Expect = 6e-24
 Identities = 67/213 (31%), Positives = 100/213 (46%), Gaps = 9/213 (4%)

Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSG 63
           +  E   DG+A IT+  P V NA     V  +    ++A    D+  ++LTG G + F  
Sbjct: 4   IRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCS 63

Query: 64  GFDINVFQKVHGAG---DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           G D    QKV G     D S +  ++V  V   I  C KP++A V G A+GGG  L M C
Sbjct: 64  GGD----QKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHMMC 119

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
              IAA   + G     +G   G  G+  + R+VG  KA E+  L +   +++   +GL+
Sbjct: 120 DLTIAAENARFGQTGPKVGSFDGGYGSSYMARIVGQKKAREIWFLCRQYDAKQALDMGLV 179

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHR 213
           + VV   +L K +  W  +I  +    IR L  
Sbjct: 180 NTVVPLADLEKETVRWCREILQKSPMAIRMLKA 212

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 259

>gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional

 Score =  101 bits (253), Expect = 9e-24
 Identities = 63/190 (33%), Positives = 90/190 (47%), Gaps = 12/190 (6%)

Query: 7   TMEVGNDG-VAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           T+E+   G VA +TL  P V NA    ++A L   F    + D V+A+VL G G  F  G
Sbjct: 5   TLEIEQRGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAG 64

Query: 65  FDINVFQKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHA 122
            D+N  +K+ G  D     D +  L  ++  I  C KP++A V G A  GG+ L   C  
Sbjct: 65  ADLNWMKKMAGYSDDENRAD-ARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDI 123

Query: 123 RIAAPKTQLGLPELTLGVIPGFGGTQRLP---RLVGLSKAIEMMLLSKSITSEEGWKLGL 179
            +AA      L E+ LG+IP        P   R +G   A    L ++   + E  +LGL
Sbjct: 124 AVAADHAVFCLSEVRLGLIP----ATISPYVIRAMGERAARRYFLTAERFDAAEALRLGL 179

Query: 180 IDAVVTSEEL 189
           +  VV +E L
Sbjct: 180 VHEVVPAEAL 189

Length = 262

>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional

 Score =  101 bits (253), Expect = 1e-23
 Identities = 66/208 (31%), Positives = 111/208 (53%), Gaps = 12/208 (5%)

Query: 6   VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
            T+E+  D VA +TL  P   NA+     + L + F    +  +V+A+VL+G+G  FS G
Sbjct: 8   FTVEL-ADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYG 66

Query: 65  FDI----NVFQKVH---GAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLE 115
            D+     VF ++     A   + +    + L   +N + DC+KP++AAV+G  +GGG++
Sbjct: 67  IDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVD 126

Query: 116 LAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGW 175
           L   C  R A+   +  + E+ LG++   G  QRLPR++G     E+ L  + I + E  
Sbjct: 127 LISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRIIGDGHLRELALTGRDIDAAEAE 186

Query: 176 KLGLIDAVV-TSEELLKVSRLWALDIAA 202
           K+GL++ V   ++ LL  +   A +IAA
Sbjct: 187 KIGLVNRVYDDADALLAAAHATAREIAA 214

Length = 272

>gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional

 Score = 99.4 bits (248), Expect = 3e-23
 Identities = 62/210 (29%), Positives = 104/210 (49%), Gaps = 11/210 (5%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEE-ATSRDDVKAIVLTGNG 58
           M   +VT++  + GVAI+TL +P V NA++I ++ GL +  +     + +V+ +VLTG G
Sbjct: 1   MQFKKVTLDF-DGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAG 59

Query: 59  GRFSGGFDINVFQKVHGAGDVSLMPDVSVEL------VVNLIEDCKKPIVAAVEGLALGG 112
             F  G   N+  +  G  +     D    L       +  + +   PIV AV G A G 
Sbjct: 60  RGFCTG--ANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGV 117

Query: 113 GLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172
           G+  A+     + A           +G++P  G T  LPRLVG ++A+E+ LL + + +E
Sbjct: 118 GMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAE 177

Query: 173 EGWKLGLIDAVVTSEELLKVSRLWALDIAA 202
              + GL++ VV   EL+  +   A ++A 
Sbjct: 178 TALQWGLVNRVVDDAELMAEAMKLAHELAN 207

Length = 266

>gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional

 Score = 97.0 bits (242), Expect = 2e-22
 Identities = 59/185 (31%), Positives = 88/185 (47%), Gaps = 17/185 (9%)

Query: 13  DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
            GVA +T+ N   +N L  P++  L        +  DV+ +VL G G + F GG DI   
Sbjct: 15  RGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEM 74

Query: 71  QKVHGAGDVSLMPDVSVELVVNL------IEDCKKPIVAAVEGLALGGGLELAMGCHARI 124
                    +L    +   +  L      +     P++A + G  LGGGLELA  C  RI
Sbjct: 75  --------ATLDQASAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRI 126

Query: 125 AAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV 184
           AA   Q G+PE+ +G IP       LPRL+G ++   ++L  ++I + +    GL+D VV
Sbjct: 127 AAHDAQFGMPEVRVG-IPSVIHAALLPRLIGWARTRWLLLTGETIDAAQALAWGLVDRVV 185

Query: 185 TSEEL 189
              EL
Sbjct: 186 PLAEL 190

Length = 256

>gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional

 Score = 96.1 bits (240), Expect = 3e-22
 Identities = 64/197 (32%), Positives = 97/197 (49%), Gaps = 15/197 (7%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           N  V  + L  P V NA+  P  A L D F    + D     VL G GG F  G D+   
Sbjct: 10  NGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAV 69

Query: 71  Q-----KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
                 ++H +GD  + P     + ++      KP++AAV G A+ GGLELA+ C  R+A
Sbjct: 70  GTGRGNRLHPSGDGPMGPS---RMRLS------KPVIAAVSGYAVAGGLELALWCDLRVA 120

Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
                 G+     GV    GGT RLPRL+G S+A++++L  + + ++E   +GL + VV 
Sbjct: 121 EEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRVVP 180

Query: 186 SEELLKVSRLWALDIAA 202
             +    +   A ++AA
Sbjct: 181 KGQARAAAEELAAELAA 197

Length = 254

>gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional

 Score = 96.1 bits (239), Expect = 6e-22
 Identities = 69/223 (30%), Positives = 108/223 (48%), Gaps = 37/223 (16%)

Query: 14  GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
            +A+ITL  P  +N++A  ++  LK+   E +  + V+ +VLTG G  FS G D     K
Sbjct: 19  EIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGAD----HK 74

Query: 73  VHGAGDVSLMPDV-----------SVELVVNLIEDCKK---PIVAAVEGLALGGGLELAM 118
             G      +P V           S+EL+ ++I   ++   P++AAV G A+GGGL LA+
Sbjct: 75  SAGV-----VPHVEGLTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLAL 129

Query: 119 GCHARIAAPKTQL-------GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITS 171
               R+A+            GL    LG+      +  LPR +G S+A E+ML  + + +
Sbjct: 130 AADIRVASSSAYFRAAGINNGLTASELGL------SYLLPRAIGSSRAFEIMLTGRDVDA 183

Query: 172 EEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRT 214
           EE  ++GL+   V  E+LL      A  +A   +P I    RT
Sbjct: 184 EEAERIGLVSRQVPDEQLLDTCYAIAARMAGFSRPGIELTKRT 226

Length = 276

>gnl|CDD|235632 PRK05869, PRK05869, enoyl-CoA hydratase; Validated

 Score = 94.5 bits (235), Expect = 7e-22
 Identities = 59/189 (31%), Positives = 91/189 (48%), Gaps = 6/189 (3%)

Query: 11  GNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
            + G+A + L  PP NAL   +   +     E   RDDV A++L G    FS G D+   
Sbjct: 14  QDAGLATLLLSRPPTNALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPEL 73

Query: 71  QKVHG--AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
           + +    A   + +   +V+ V  +     KP VAA+ G ALG GL LA+    R++   
Sbjct: 74  RTLSAQEADTAARVRQQAVDAVAAI----PKPTVAAITGYALGAGLTLALAADWRVSGDN 129

Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
            + G  E+  G+ P   G  RL R  G S+A E++   +   +EE   LGLID +V  ++
Sbjct: 130 VKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALGLIDEMVAPDD 189

Query: 189 LLKVSRLWA 197
           +   +  WA
Sbjct: 190 VYDAAAAWA 198

Length = 222

>gnl|CDD|216084 pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain

 Score = 89.2 bits (222), Expect = 2e-21
 Identities = 41/97 (42%), Positives = 56/97 (57%), Gaps = 3/97 (3%)

Query: 491 GFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQLLDLAGYGVAAATSK 548
           GF VNR   P    A  LV  GV     ID+A+R   GLP+GPF+L DL G  V     +
Sbjct: 1   GFVVNRLLAPLLNEAIRLVEEGVATPEDIDAAMRLGLGLPMGPFELSDLVGLDVGYHILE 60

Query: 549 EFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTY 584
              + F DR+++ SPL++ L+++GR G+  GKG Y Y
Sbjct: 61  VLAEEFGDRAYRPSPLLEKLVEAGRLGRKTGKGFYKY 97

This family also includes lambda crystallin. Some proteins include two copies of this domain. Length = 97

>gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional

 Score = 93.6 bits (233), Expect = 3e-21
 Identities = 58/211 (27%), Positives = 97/211 (45%), Gaps = 23/211 (10%)

Query: 3   APRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
            P   +E       I+T+  P   NAL+  ++  + D ++   +  D+++ +LTG GG F
Sbjct: 4   GPHALVE-QRGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAF 62

Query: 62  SGGFDINVFQKVH-------GAGDVSLMPDVSVELVVNLIED--CKKPIVAAVEGLALGG 112
             G D+    K         G+ D S +          L++     KP++AAVEG A+ G
Sbjct: 63  CAGMDLKAATKKPPGDSFKDGSYDPSRID--------ALLKGRRLTKPLIAAVEGPAIAG 114

Query: 113 GLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172
           G E+  G   R+A    + G+ E    + P  G   RL R +  + A +++L  + IT+ 
Sbjct: 115 GTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAA 174

Query: 173 EGWKLGLIDAVVTSEELLKVSRLWALDIAAR 203
           E  ++GLI  VV   + L      AL++A  
Sbjct: 175 EAKEIGLIGHVVPDGQALDK----ALELAEL 201

Length = 263

>gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional

 Score = 93.0 bits (232), Expect = 4e-21
 Identities = 57/196 (29%), Positives = 94/196 (47%), Gaps = 25/196 (12%)

Query: 4   PRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFS 62
            RV++ +  DG+A + L  P  +NAL   +   L    +       ++A++L+G GG F 
Sbjct: 3   DRVSVTI-EDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFC 61

Query: 63  GGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE--------------DCKKPIVAAVEGL 108
            G D+           V+  P  +V+L+   +                   P++AA+EG+
Sbjct: 62  AGLDV---------KSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPVPVIAALEGV 112

Query: 109 ALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKS 168
             GGGL++A+G   RIAAP T+L + E   G++P   GT  L  LV    A E+   ++ 
Sbjct: 113 CFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELTYTARV 172

Query: 169 ITSEEGWKLGLIDAVV 184
            ++EE  +LGL+  V 
Sbjct: 173 FSAEEALELGLVTHVS 188

Length = 262

>gnl|CDD|223524 COG0447, MenB, Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

 Score = 93.3 bits (232), Expect = 5e-21
 Identities = 73/214 (34%), Positives = 103/214 (48%), Gaps = 12/214 (5%)

Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG---RF 61
           +T E   DG+A IT+  P V NA     V  + D F +A    +V  I+LTGNG     F
Sbjct: 20  ITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAF 79

Query: 62  SGGFDINVFQKVHGAG----DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELA 117
             G D    QKV G      D   +P ++V  +  LI    KP++A V G A+GGG  L 
Sbjct: 80  CSGGD----QKVRGDSGGYVDDDGIPRLNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLH 135

Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
           + C   IAA     G     +G   G  G+  L R+VG  KA E+  L +   +EE   +
Sbjct: 136 VVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEEALDM 195

Query: 178 GLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 211
           GL++ VV   +L K +  WA ++ A+    +R L
Sbjct: 196 GLVNTVVPHADLEKETVQWAREMLAKSPTALRML 229

Length = 282

>gnl|CDD|181340 PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score = 91.7 bits (228), Expect = 4e-20
 Identities = 80/284 (28%), Positives = 126/284 (44%), Gaps = 20/284 (7%)

Query: 319 MGSGIATAHILNNIYVVLKEVN-------SEYLLKGIKTIEANVRGLVTRGKLTQDKANN 371
           MG GIA A       V L +              +    IE  +  LV  G++   +A+ 
Sbjct: 1   MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADA 60

Query: 372 ALKMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
            L  +  V+      D     D+V EAV E +  K++    L +      I+A+ TST  
Sbjct: 61  VLARIA-VVARDGAADALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFL 119

Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
           +  +    +  +R + AH+ +PA++MPL+E+  ++ T   V+  L  + + I KVPVV G
Sbjct: 120 VTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAVVDRLAALLERIGKVPVVCG 179

Query: 488 NCTGFAVNR-AFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLP---IGPFQLLDLAGYG 541
              G+ V R      +++AR +V  GV     ID AIR  FGL    +G  + +D  G  
Sbjct: 180 PSPGYIVPRIQALAMNEAAR-MVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCD 238

Query: 542 VAAATSKEFDKAF-PDRSFQSPLVDLLLKSGRNGKANGKGLYTY 584
           +    S+       PDR     +V   ++ GR+G   G G Y Y
Sbjct: 239 ILYYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDY 282

Length = 314

>gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional

 Score = 89.6 bits (223), Expect = 5e-20
 Identities = 59/212 (27%), Positives = 89/212 (41%), Gaps = 20/212 (9%)

Query: 6   VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
           +T      G+A +T+  PPVNAL       L D    A +  D + +VL   G  F+ G 
Sbjct: 3   ITSTTPEPGIAEVTVDYPPVNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGV 62

Query: 66  DINVFQKVHGAGDVSLMPDVSVELVVN--------LIEDCKKPIVAAVEGLALGGGLELA 117
           DI   Q           P  +  +  N         + +C  P++AAV G  LGGG+ L 
Sbjct: 63  DIKELQAT---------PGFTALIDANRGCFAAFRAVYECAVPVIAAVHGFCLGGGIGLV 113

Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
                 +A+     GLPE+  G +   G    L RLV       +   + +IT+ E    
Sbjct: 114 GNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTAATITAAELHHF 170

Query: 178 GLIDAVVTSEELLKVSRLWALDIAARRKPWIR 209
           G ++ VV  ++L + +   A  IAA+    IR
Sbjct: 171 GSVEEVVPRDQLDEAALEVARKIAAKDTRVIR 202

Length = 249

>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA hydratase paaB

 Score = 89.5 bits (222), Expect = 7e-20
 Identities = 58/185 (31%), Positives = 90/185 (48%), Gaps = 13/185 (7%)

Query: 13  DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
            GVA +TL  P  +N+    +   L++  E    RDD +A++LTG G  F  G D++   
Sbjct: 7   AGVARLTLNRPDKLNSFTAEMHLELREALERV-ERDDARALMLTGAGRGFCAGQDLSERN 65

Query: 72  KVHGAGDVSLMPDV--SVEL----VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
              G       PD+  ++E     +V  +     P+V AV G+A G G  LA+ C   +A
Sbjct: 66  PTPGG-----APDLGRTIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLA 120

Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
           A   +       +G+IP  GGT  LPRLVG ++A+ + +L + + +      GLI  VV 
Sbjct: 121 AESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLIWQVVD 180

Query: 186 SEELL 190
              L+
Sbjct: 181 DAALM 185

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). Length = 256

>gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional

 Score = 89.7 bits (223), Expect = 7e-20
 Identities = 59/210 (28%), Positives = 99/210 (47%), Gaps = 14/210 (6%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           M+A  ++   G     ++TL NP   NAL   + A   +    A     ++A+VLTG GG
Sbjct: 1   MSAELLSRREG--STLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGG 58

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDV---SVELVVNLIE---DCKKPIVAAVEGLALGGG 113
            F  G ++N         + +  P V   S++ + + I       KP++AAVEG A G G
Sbjct: 59  FFCAGGNLNRL-----LENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAG 113

Query: 114 LELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEE 173
             LA+ C   +AA   +  +  + +G+ P  GG+  L R +    A E++L  K I++E 
Sbjct: 114 FSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAER 173

Query: 174 GWKLGLIDAVVTSEELLKVSRLWALDIAAR 203
              LG+++ +    + L  +   A  +AA 
Sbjct: 174 LHALGVVNRLAEPGQALAEALALADQLAAG 203

Length = 260

>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional

 Score = 89.0 bits (221), Expect = 9e-20
 Identities = 66/229 (28%), Positives = 98/229 (42%), Gaps = 10/229 (4%)

Query: 3   APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
              V ++V +DGVA+IT+ +P   NA+   + A L+     A +  DV A+V+TG G  F
Sbjct: 2   MDPVLLDV-DDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAF 60

Query: 62  SGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
             G D+       G      +  +    +   +  C  P +AAV G A+G GL LA+   
Sbjct: 61  CAGADLTALGAAPGRPAEDGLRRIYDGFLA--VASCPLPTIAAVNGAAVGAGLNLALAAD 118

Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
            RIA PK         LG+ PG G T  L R VG   A   +L      +E   + GL  
Sbjct: 119 VRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLAL 178

Query: 182 AVVTSEELLKVSRLWALDIAARRKPWIR----SLHRTDKLGSLSEAREV 226
            V   ++ +  +   A   AA  +  +     S+  T  L   + A E 
Sbjct: 179 MVA--DDPVAAALELAAGPAAAPRELVLATKASMRATASLAQHAAAVEF 225

Length = 249

>gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

 Score = 89.2 bits (221), Expect = 1e-19
 Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 12/195 (6%)

Query: 21  INPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV----- 73
           +N P   NAL++                 +V  I+L+G G  F  G D+     +     
Sbjct: 23  LNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSS 82

Query: 74  ---HGAGDVSLMPDV-SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
               G     L   +  ++  +  IE C+KP++AA+ G  +GGG+++   C  R  +   
Sbjct: 83  SGDRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDA 142

Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-EE 188
              + E+ L +    G  QRLP +VG   A+E+ L  +  +  E  +LGL+  V  S E+
Sbjct: 143 FFSVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRFSGSEAKELGLVSRVFGSKED 202

Query: 189 LLKVSRLWALDIAAR 203
           L +  RL A  IAA+
Sbjct: 203 LDEGVRLIAEGIAAK 217

Length = 275

>gnl|CDD|235936 PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated

 Score = 88.5 bits (220), Expect = 1e-19
 Identities = 52/210 (24%), Positives = 92/210 (43%), Gaps = 14/210 (6%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG 58
           M    V +    +G+A +T+    V  NA +  +   L + F+        K ++LTG  
Sbjct: 1   MMMKVVELREVEEGIAQVTM-QDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYP 59

Query: 59  GRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAM 118
             F+ G        +   G  +     +   + +L  +C  P++AA++G A+GGGL L +
Sbjct: 60  NYFATGGTQEGLLSLQ-TGKGT----FTEANLYSLALNCPIPVIAAMQGHAIGGGLVLGL 114

Query: 119 GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 178
                + + ++      +  G  PG G T  LP  +GL+   EM+L ++     E  K G
Sbjct: 115 YADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYYRGAELKKRG 174

Query: 179 LIDAVVTSEELLKVSRLWALDIAAR--RKP 206
           +   V+   E+L+     AL++A     KP
Sbjct: 175 VPFPVLPRAEVLEK----ALELARSLAEKP 200

Length = 249

>gnl|CDD|180958 PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated

 Score = 83.4 bits (207), Expect = 1e-17
 Identities = 67/193 (34%), Positives = 96/193 (49%), Gaps = 9/193 (4%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
           DG+A IT+  P V NA     V  + D F +A   D++  I+LTG G + F  G D    
Sbjct: 21  DGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGD---- 76

Query: 71  QKVHGAG---DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAP 127
           QKV G G   D   +P ++V  +  LI  C KP++A V G A+GGG  L + C   IAA 
Sbjct: 77  QKVRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAAD 136

Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
               G     +G   G  G   L R+VG  KA E+  L +   ++E   +GL++ VV   
Sbjct: 137 NAIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIWFLCRQYDAQEALDMGLVNTVVPLA 196

Query: 188 ELLKVSRLWALDI 200
           +L K +  W  ++
Sbjct: 197 DLEKETVRWCREM 209

Length = 273

>gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase

 Score = 82.3 bits (203), Expect = 2e-17
 Identities = 66/200 (33%), Positives = 97/200 (48%), Gaps = 19/200 (9%)

Query: 13  DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINV 69
           +G+A I  IN P  +NA        L    ++A     +  IVL G G + F  G D   
Sbjct: 10  NGIAWIM-INRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGD--- 65

Query: 70  FQKVH-----GAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARI 124
            Q  H     G G + L     +E + + I D  KP++A V+G A+GGG  L   C   I
Sbjct: 66  -QSTHDGGYDGRGTIGL----PMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTI 120

Query: 125 AAPKTQLGLPELTLG-VIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           A+ K Q G     +G V PG+ GT  L R+VG  KA E+  L +  T++E   +GL++AV
Sbjct: 121 ASEKAQFGQVGPKVGSVDPGY-GTALLARVVGEKKAREIWYLCRRYTAQEALAMGLVNAV 179

Query: 184 VTSEELLKVSRLWALDIAAR 203
           V  ++L    + W  +I  +
Sbjct: 180 VPHDQLDAEVQKWCDEIVEK 199

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. Length = 256

>gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase

 Score = 82.5 bits (204), Expect = 5e-17
 Identities = 62/186 (33%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
           +G+A IT+  P   NA     V  L+  F +A     V  I+LTG G + F  G D  V 
Sbjct: 75  EGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVR 134

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
            K  G         ++V  +   I    KP++A V G A+GGG  L M C   IAA    
Sbjct: 135 GK-DGYVGPDDAGRLNVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAV 193

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
            G     +G      G+  + RLVG  KA EM  L++  T+ E  K+GL++ VV  +EL 
Sbjct: 194 FGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTASEALKMGLVNTVVPLDELE 253

Query: 191 KVSRLW 196
             +  W
Sbjct: 254 GETVKW 259

Length = 327

>gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional

 Score = 80.3 bits (199), Expect = 1e-16
 Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 15/210 (7%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG 58
           M    + + +   GVA +TL N P  +N+    +   L++  ++    D  +A++LTG G
Sbjct: 1   MMYETILLAI-EAGVATLTL-NRPDKLNSFTREMHRELREALDQV-EDDGARALLLTGAG 57

Query: 59  GRFSGGFDINVFQKVHGAGDVSLMPD--VSVEL----VVNLIEDCKKPIVAAVEGLALGG 112
             F  G D+       G      MPD   S+E     +V  +     P++AAV G+A G 
Sbjct: 58  RGFCAGQDLADRDVTPGGA----MPDLGESIETFYNPLVRRLRALPLPVIAAVNGVAAGA 113

Query: 113 GLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172
           G  LA+ C   +AA         + +G++P  GGT  LPRLVG+++A+ + LL + +++E
Sbjct: 114 GANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLGEKLSAE 173

Query: 173 EGWKLGLIDAVVTSEELLKVSRLWALDIAA 202
           +  + GLI  VV    L   ++  A  +A 
Sbjct: 174 QAEQWGLIWRVVDDAALADEAQQLAAHLAT 203

Length = 262

>gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional

 Score = 79.6 bits (197), Expect = 3e-16
 Identities = 65/230 (28%), Positives = 90/230 (39%), Gaps = 36/230 (15%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           M    V  EV    +A ITL  P   NA    ++  L   F  A + D V+ IVL G G 
Sbjct: 1   MEYEYVRYEV-AGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGK 59

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL-----------------------IED 96
            FS G D+          D    PD    L  +                          D
Sbjct: 60  HFSAGHDLGSGTPGR---DRDPGPDQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRD 116

Query: 97  CKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---FGGTQRLPRL 153
             KP +A V+G  + GGL LA  C   +A+       P + +G IPG   F     L   
Sbjct: 117 LPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMG-IPGVEYFAHPWEL--- 172

Query: 154 VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR 203
            G  KA E++     +T++E  +LG+++ VV  +EL   +   A  IAA 
Sbjct: 173 -GPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAM 221

Length = 288

>gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional

 Score = 78.7 bits (194), Expect = 3e-16
 Identities = 54/191 (28%), Positives = 96/191 (50%), Gaps = 4/191 (2%)

Query: 14  GVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
           GV +I    P   NA+   + A +    + A + D ++A V  G  G FS G D+  F  
Sbjct: 15  GVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLA 74

Query: 73  VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLG 132
               G  S   ++ ++ ++ L E  +KPIV+ V+GLA+G G  + + C    A+P++   
Sbjct: 75  A-AMGGTSFGSEI-LDFLIALAE-AEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFR 131

Query: 133 LPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKV 192
            P + L ++P  G +   PRL+G  +A  ++ L +  ++E   + GLI  +V  E +   
Sbjct: 132 TPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAE 191

Query: 193 SRLWALDIAAR 203
           +   A ++AA+
Sbjct: 192 TLKAAEELAAK 202

Length = 251

>gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional

 Score = 78.5 bits (194), Expect = 5e-16
 Identities = 64/204 (31%), Positives = 99/204 (48%), Gaps = 11/204 (5%)

Query: 4   PRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFS 62
           P +  +    GV  I L  P   NA    +   L D + +     DV+ +++ G G  FS
Sbjct: 11  PALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFS 70

Query: 63  GGFDINVFQKVHGAGDVSLMPDVSVE---LVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            G D+ + +++  A D  +   V  E   LV N+I +C KPIV+A+ G A+G GL  A+ 
Sbjct: 71  AGGDLALVEEM--ADDFEVRARVWREARDLVYNVI-NCDKPIVSAIHGPAVGAGLVAALL 127

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
               IAA   ++      LGV  G       P L G++KA   +LL + ++ EE  ++GL
Sbjct: 128 ADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLLCEPVSGEEAERIGL 187

Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
           +   V  +ELL      AL++A R
Sbjct: 188 VSLAVDDDELLPK----ALEVAER 207

Length = 268

>gnl|CDD|236044 PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

 Score = 81.3 bits (201), Expect = 5e-16
 Identities = 65/251 (25%), Positives = 110/251 (43%), Gaps = 33/251 (13%)

Query: 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQ 366
            + K A IGGG++G G A   +L  I V + + + E     I  + AN            
Sbjct: 3   MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERI-IGEVLAN------------ 49

Query: 367 DKANNALKMLKGV-------LDYSE-----FKDVDMVIEAVIESVPLKQKIFSELEKACP 414
             A  A  ML          L +           D + E+V E + LK+++ +E++ A  
Sbjct: 50  --AERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAAR 107

Query: 415 PHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMT 474
           P  ++ ++TS    + + E  +  +R+  AH ++P +++PL+E+V   +TS + I     
Sbjct: 108 PDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTSPETIRRAKE 167

Query: 475 VGKIIKKVPVVVGN-CTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGL---P 528
           + + I   PV +      F  +R      + A  LV  G+     ID  IR SFGL    
Sbjct: 168 ILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWAQ 227

Query: 529 IGPFQLLDLAG 539
           +G F+   +AG
Sbjct: 228 MGLFETYRIAG 238

Length = 495

>gnl|CDD|235744 PRK06213, PRK06213, enoyl-CoA hydratase; Provisional

 Score = 77.3 bits (191), Expect = 7e-16
 Identities = 56/184 (30%), Positives = 83/184 (45%), Gaps = 14/184 (7%)

Query: 12  NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
            DGVA ITL +  VNAL+  ++  L    ++A   DD   +V+TG  G FSGGFD+ V  
Sbjct: 10  EDGVATITLDDGKVNALSPAMIDALNAALDQA--EDDRAVVVITGQPGIFSGGFDLKVMT 67

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQ 130
              GA     +      L   L+    KP++ A  G A+  G  L +    RI      +
Sbjct: 68  S--GAQAAIALLTAGSTLARRLLSH-PKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFK 124

Query: 131 LGLPELTLG-VIPGFG---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186
           +GL E+ +G  +P         RL       +A+   + ++    EE    G +D VV  
Sbjct: 125 IGLNEVAIGMTMPHAAIELARDRLTP-SAFQRAV---INAEMFDPEEAVAAGFLDEVVPP 180

Query: 187 EELL 190
           E+LL
Sbjct: 181 EQLL 184

Length = 229

>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional

 Score = 77.0 bits (190), Expect = 1e-15
 Identities = 54/177 (30%), Positives = 84/177 (47%), Gaps = 3/177 (1%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
              VA I L  P   NAL  P++  L    +E  +      +VL GNG  FS G DI + 
Sbjct: 13  EGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMM 71

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
              +       + +   E+VV L     K  ++A+ G A G GL +A+     IA    +
Sbjct: 72  LSSNDESKFDGVMNTISEIVVTLY-TMPKLTISAIHGPAAGLGLSIALTADYVIADISAK 130

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
           L +  + +G+IP  GG   L + VG +KA +++   K +++ E   LGLID V+  +
Sbjct: 131 LAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLIDEVIGGD 187

Length = 260

>gnl|CDD|235706 PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenase; Validated

 Score = 77.8 bits (192), Expect = 2e-15
 Identities = 70/249 (28%), Positives = 115/249 (46%), Gaps = 20/249 (8%)

Query: 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK 368
             VA+IG GL+G   A         V L + +          I   +  L     L  + 
Sbjct: 3   GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEA 62

Query: 369 ANNALKMLKGVLDYSE-FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
            +  L  ++     ++   D D V E+  E++ LK+ +F+EL+   PPH ILA++TS + 
Sbjct: 63  PDAVLARIRVTDSLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALL 122

Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
            +   E  + ++R + AH  +P +++P++E+V    T+   +     + +   + PV + 
Sbjct: 123 ASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAPATLARAEALYRAAGQSPVRLR 182

Query: 488 -NCTGFAVNRAFFPYSQSARL-----LVSLGV-DVFRIDSAIRSFGLP-----IGPFQLL 535
               GF +NR      Q A L     LV+ GV  V  ID+ IR  GL      +GPF+ +
Sbjct: 183 REIDGFVLNRL-----QGALLREAFRLVADGVASVDDIDAVIRD-GLGLRWSFMGPFETI 236

Query: 536 DL-AGYGVA 543
           DL A  GVA
Sbjct: 237 DLNAPGGVA 245

Length = 308

>gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 55/195 (28%), Positives = 91/195 (46%), Gaps = 21/195 (10%)

Query: 7   TMEVGND--GVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           T+ +  D  GVA +TL  P   NAL+  ++A L        +   V+ +VLTG G  F  
Sbjct: 5   TIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCA 64

Query: 64  GFDINVFQ---------KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGL 114
           G D+   +         ++  A  +++M        +  + D  KP++  ++G A GGG+
Sbjct: 65  GGDLGWMRAQMTADRATRIEEARRLAMM--------LKALNDLPKPLIGRIQGQAFGGGV 116

Query: 115 ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG 174
            L   C   IA    + GL E  LG+IP       + R +G + A  + + ++   +EE 
Sbjct: 117 GLISVCDVAIAVSGARFGLTETRLGLIPATISPYVVAR-MGEANARRVFMSARLFDAEEA 175

Query: 175 WKLGLIDAVVTSEEL 189
            +LGL+  VV +E L
Sbjct: 176 VRLGLLSRVVPAERL 190

Length = 262

>gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional

 Score = 75.4 bits (186), Expect = 5e-15
 Identities = 55/200 (27%), Positives = 90/200 (45%), Gaps = 9/200 (4%)

Query: 6   VTMEVGNDG-VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           V+ E    G V +I L  P   NA    ++  L     E  + D+++  VL  +G  F+ 
Sbjct: 1   VSRER--RGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTA 58

Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
           G D+        AG     P+  ++    +     KP+V AV+G  L  G+EL +     
Sbjct: 59  GLDLADVAPKLAAG-GFPFPEGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIV 117

Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           +AA  T+    E+  G++P  G T R P+  G   A+  +L      ++E  +LGL+  V
Sbjct: 118 VAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQEALRLGLVQEV 177

Query: 184 VTSEELLKVSRLWALDIAAR 203
           V   E L+     A+++A R
Sbjct: 178 VPPGEQLER----AIELAER 193

Length = 255

>gnl|CDD|132233 TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecarbonyl-CoA hydratase

 Score = 75.0 bits (184), Expect = 6e-15
 Identities = 64/233 (27%), Positives = 97/233 (41%), Gaps = 21/233 (9%)

Query: 20  LINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79
           L  P  N +   ++A L     E      ++A++L   G  FS            GA   
Sbjct: 16  LARPKANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFS-----------FGASVA 64

Query: 80  SLMPDVSVELVVNL------IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGL 133
             MPD    ++ +L      + D   PI+ AV G  LGGGLE+A   +   AAP  +LG 
Sbjct: 65  EHMPDQCAAMLASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQ 124

Query: 134 PELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVS 193
           PE+ LGV      +  LP  +G   A +++   +SI   EG ++GL +AV    E   + 
Sbjct: 125 PEIVLGVFAP-AASCLLPERMGRVAAEDLLYSGRSIDGAEGARIGLANAVAEDPENAAL- 182

Query: 194 RLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQA 246
             +    A      +R   R  +LG     +   K+A ++A      M  H A
Sbjct: 183 AWFDEHPAKLSASSLRFAVRAARLGMNERVKA--KIAEVEALYLEELMATHDA 233

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. Length = 251

>gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional

 Score = 74.7 bits (184), Expect = 7e-15
 Identities = 61/196 (31%), Positives = 95/196 (48%), Gaps = 14/196 (7%)

Query: 9   EVGNDG-VAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFD 66
            V  DG V  I L  P   NAL   +   L++   +A   +  +AIVLTG G  F  G D
Sbjct: 3   GVTRDGQVLTIELQRPERRNALNAELCEELREAVRKAVD-ESARAIVLTGQGTVFCAGAD 61

Query: 67  INVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA 126
           ++      G       PD  +E++   I+    P++AA+ G A+G GL+LAM C  R+ A
Sbjct: 62  LS------GDVYADDFPDALIEMLHA-IDAAPVPVIAAINGPAIGAGLQLAMACDLRVVA 114

Query: 127 PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186
           P+     P    G+       +RL  LVG  +A  M+L ++ +T+E+    G+ + + T 
Sbjct: 115 PEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMANRIGT- 173

Query: 187 EELLKVSRLWALDIAA 202
              L  ++ WA +IA 
Sbjct: 174 ---LADAQAWAAEIAG 186

Length = 243

>gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional

 Score = 74.4 bits (183), Expect = 8e-15
 Identities = 50/186 (26%), Positives = 89/186 (47%), Gaps = 5/186 (2%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           D +A +TL  P V N   IP+   + +    A     V+ +++  NG  FS G D+   +
Sbjct: 10  DDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMK 69

Query: 72  KVHGAGDVSLMPDVSVELVVNL---IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
           +     DV  +  +  ELV  +   I+   KP++  V+G   G    +A+     IA+ K
Sbjct: 70  RAVDEDDVQSLVKI-AELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTK 128

Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
           T+     + +G+ P  GG   L R +GL++A  + +  +++T+E+  + G +  V  SE+
Sbjct: 129 TKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFVYRVAESEK 188

Query: 189 LLKVSR 194
           L K   
Sbjct: 189 LEKTCE 194

Length = 255

>gnl|CDD|236338 PRK08788, PRK08788, enoyl-CoA hydratase; Validated

 Score = 73.4 bits (181), Expect = 3e-14
 Identities = 34/83 (40%), Positives = 47/83 (56%)

Query: 102 VAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161
           +A V+G ALGGG E A+  H  IA    ++G PE+   + PG G    L R VG   A E
Sbjct: 125 IALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARRVGPKLAEE 184

Query: 162 MMLLSKSITSEEGWKLGLIDAVV 184
           ++L  K  T+EE   +GL+D +V
Sbjct: 185 LILSGKLYTAEELHDMGLVDVLV 207

Length = 287

>gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated

 Score = 73.1 bits (180), Expect = 4e-14
 Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 12/208 (5%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
             AP +  E   DGVA +TL  P   NAL+  ++A L+   +   +   V+ +VL   G 
Sbjct: 8   TEAPLLLRED-RDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGK 66

Query: 60  RFSGGFDINVFQKVHGAGDVS-LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAM 118
            F  G D+   +   G      L    S   V+  I    +P++A V G+A   G +L  
Sbjct: 67  AFCAGHDLKEMRAARGLAYFRALFARCSR--VMQAIVALPQPVIARVHGIATAAGCQLVA 124

Query: 119 GCHARIAAPKTQLGLPELTLGVI---PGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGW 175
            C   +AA   +  +P + +G+    P       L R V   +A+EM+L  + I +    
Sbjct: 125 SCDLAVAADTARFAVPGVNIGLFCSTPMVA----LSRNVPRKQAMEMLLTGEFIDAATAR 180

Query: 176 KLGLIDAVVTSEELLKVSRLWALDIAAR 203
           + GL++ VV ++ L       A  IAA+
Sbjct: 181 EWGLVNRVVPADALDAAVARLAAVIAAK 208

Length = 266

>gnl|CDD|236908 PRK11423, PRK11423, methylmalonyl-CoA decarboxylase; Provisional

 Score = 72.0 bits (177), Expect = 7e-14
 Identities = 52/193 (26%), Positives = 86/193 (44%), Gaps = 7/193 (3%)

Query: 13  DGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR--FSGGFDINV 69
           + +A IT  NP   NAL+  ++  L     +  +R +++ ++L    G   +S G DI+ 
Sbjct: 12  NKIATITFNNPAKRNALSKVLIDDLMQALSDL-NRPEIRVVILRAPSGSKVWSAGHDIH- 69

Query: 70  FQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
             ++   G   L  D  +  ++ +I+   KP++A VEG   GG  EL M C   IAA  +
Sbjct: 70  --ELPSGGRDPLSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTS 127

Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
              +    LGV     G        G     EM   +  IT++    +G+++ VV  EEL
Sbjct: 128 TFAMTPANLGVPYNLSGILNFTNDAGFHIVKEMFFTASPITAQRALAVGILNHVVEVEEL 187

Query: 190 LKVSRLWALDIAA 202
              +   A  I+ 
Sbjct: 188 EDFTLQMAHHISE 200

Length = 261

>gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional

 Score = 70.1 bits (172), Expect = 3e-13
 Identities = 51/157 (32%), Positives = 72/157 (45%), Gaps = 7/157 (4%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
                V   V + GVA +TL +P   NAL+  +VA L D    A +   V+A+VLT  GG
Sbjct: 3   PVDTLVRYAV-DGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGG 61

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL---IEDCKKPIVAAVEGLALGGGLEL 116
            F  G D++  +   G GD           +  L   I +  KP++AA++G    GG  L
Sbjct: 62  TFCAGADLS--EAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGL 119

Query: 117 AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL 153
              C   +A P++   L E  +GV P       LPRL
Sbjct: 120 VGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRL 156

Length = 260

>gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase; Validated

 Score = 69.3 bits (170), Expect = 6e-13
 Identities = 53/197 (26%), Positives = 90/197 (45%), Gaps = 24/197 (12%)

Query: 6   VTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           V +EV  DG+A +TL N P   NA++  +   + D  +     DD   +VLTG G  +S 
Sbjct: 10  VKVEV-EDGIAWVTL-NRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSA 67

Query: 64  GFDIN-VFQKVHGAGDVSLMPDVSVELVVNLIEDC----------KKPIVAAVEGLALGG 112
           G D+   F++     ++         L   +  +           +KP +A V G   GG
Sbjct: 68  GMDLKEYFRETDAQPEI---------LQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGG 118

Query: 113 GLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172
           G    + C   IAA + Q GL E+  G+ PG G ++ +   VG   A+  ++  ++ T  
Sbjct: 119 GFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGR 178

Query: 173 EGWKLGLIDAVVTSEEL 189
           +  ++GL++  V   +L
Sbjct: 179 KAAEMGLVNESVPLAQL 195

Length = 275

>gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 53/209 (25%), Positives = 81/209 (38%), Gaps = 30/209 (14%)

Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           +T EV    +A ITL  P   NA+       L+   E A     V  I+++G G  F  G
Sbjct: 12  MTYEV-TGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAG 70

Query: 65  FDINVFQKVHGAGDVSLMPDVSVELVVNLIED-----------------------CKKPI 101
           +D++ + +   +G          + V +L +D                         KP 
Sbjct: 71  YDLSAYAEGSSSGGGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPT 130

Query: 102 VAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL-GVIPGFGGTQRLPRLVGLSKAI 160
           VA V G  + GG ++A+ C   IAA   ++G P   + GV        RL    G  +A 
Sbjct: 131 VAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPATGMWAYRL----GPQRAK 186

Query: 161 EMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
            ++     IT  +  + GL    V  EEL
Sbjct: 187 RLLFTGDCITGAQAAEWGLAVEAVPPEEL 215

Length = 302

>gnl|CDD|235533 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional

 Score = 69.5 bits (171), Expect = 1e-12
 Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 6/147 (4%)

Query: 14  GVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
           GV +ITL N P  +NAL++ ++  +    +     D V A+V+ G G R F  G DI   
Sbjct: 12  GVGVITL-NRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRAL 70

Query: 71  QKVHGAGDVSLMPDV-SVELVVN-LIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
            +   AGD          E  +N LI    KP +A ++G+ +GGG+ ++     RI   +
Sbjct: 71  YEAARAGDPLAADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTER 130

Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVG 155
           T++ +PE  +G  P  GGT  L R  G
Sbjct: 131 TKMAMPETGIGFFPDVGGTYFLSRAPG 157

Length = 342

>gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional

 Score = 67.5 bits (165), Expect = 2e-12
 Identities = 38/169 (22%), Positives = 78/169 (46%), Gaps = 7/169 (4%)

Query: 13  DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           +G AI+T+  P  +NAL + +      K ++  +   ++ +++TG G  F  G D++ F 
Sbjct: 8   EGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEF- 66

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
               A D ++    +   ++  I    K  ++A+ G+  G  + +A+    + A+   + 
Sbjct: 67  ----APDFAIDLRETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKF 122

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
                 LG+    G    L +L G  +  E+++L    T+EE  + GL+
Sbjct: 123 VTAFQRLGLASDTGVAYFLLKLTG-QRFYEILVLGGEFTAEEAERWGLL 170

Length = 248

>gnl|CDD|235938 PRK07112, PRK07112, polyketide biosynthesis enoyl-CoA hydratase; Validated

 Score = 66.2 bits (162), Expect = 6e-12
 Identities = 58/233 (24%), Positives = 91/233 (39%), Gaps = 29/233 (12%)

Query: 7   TMEVGNDG-VAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           T+ V   G V  + L  P   N +   ++A   D  +          +VL G    F  G
Sbjct: 5   TIRVRQQGDVCFLQLHRPEAQNTINDRLIAECMDVLDRC--EHAATIVVLEGLPEVFCFG 62

Query: 65  FDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCK---KPIVAAVEGLALGGGLELAMGCH 121
            D   F  +    D      +  E + +L           +A V G    GG+       
Sbjct: 63  AD---FSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASD 119

Query: 122 ARIAAPKTQLGLPELTLGVIPG----FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
             IA       L EL  G+IP     F     L R +G  KA  M L+++ +T+++ +  
Sbjct: 120 IVIADETAPFSLSELLFGLIPACVLPF-----LIRRIGTQKAHYMTLMTQPVTAQQAFSW 174

Query: 178 GLIDAVVT-SEELLK--VSRLWALDIAA--RRKPWIRSLHRTDKLGSLSEARE 225
           GL+DA    S+ LL+  + RL  L+ AA  R K +  +L       +++ AR 
Sbjct: 175 GLVDAYGANSDTLLRKHLLRLRCLNKAAVARYKSYASTL-----DDTVAAARP 222

Length = 255

>gnl|CDD|215635 PLN03214, PLN03214, probable enoyl-CoA hydratase/isomerase; Provisional

 Score = 60.7 bits (147), Expect = 5e-10
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 25/204 (12%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
            A P V ++    G+A++ L   PVN++ + +   L D      +   V+ +V      R
Sbjct: 8   GATPGVRVDRRPGGIAVVWLAKEPVNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRR 67

Query: 61  --FSGGFDINVFQKVHGAGDVSLMPDVSVE-----------LVVNLIEDCKKPIVAAVEG 107
             F+ G DI    +++        P  S              +V L+   +   V A+ G
Sbjct: 68  DVFTAGNDIA---ELYA-------PKTSAARYAEFWLTQTTFLVRLLRS-RLATVCAIRG 116

Query: 108 LALGGGLELAMGCHARIAAPKTQLGLPELTLGV-IPGFGGTQRLPRLVGLSKAIEMMLLS 166
               GG  +++ C  R+   +  +GL E+ LG+ +P F     + R++    A  ++L  
Sbjct: 117 ACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVAESLLLRG 176

Query: 167 KSITSEEGWKLGLIDAVVTSEELL 190
           + +   E  +LGLID VV +  L+
Sbjct: 177 RLVRPAEAKQLGLIDEVVPAAALM 200

Length = 278

>gnl|CDD|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score = 60.2 bits (146), Expect = 1e-09
 Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 13/150 (8%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
             V +ITL  P   N +++ +V+ L +  E+    D V+ I++ G G  FS G D+ +F 
Sbjct: 19  GRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFY 78

Query: 72  KVHGAGDVSLMPDVSVELVVNL------IEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
                 D     D  +E+V  +      I   KK  VA V GL +GGG  L +    R+ 
Sbjct: 79  D-GRESD-----DSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVV 132

Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVG 155
             KT    PE ++G     G +  L RL G
Sbjct: 133 TEKTVFATPEASVGFHTDCGFSYILSRLPG 162

Length = 379

>gnl|CDD|181386 PRK08321, PRK08321, naphthoate synthase; Validated

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 66/229 (28%), Positives = 91/229 (39%), Gaps = 42/229 (18%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG------GR-FSGG 64
            G   I    P V NA     V  L    + A    DV  ++LTGNG      G  F  G
Sbjct: 33  QGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSG 92

Query: 65  FDINVFQKVHG-------AGDVSLMPDVS-------VELVVNLIEDCKKPIVAAVEGLAL 110
            D    Q++ G        GD +   D +       +E V  LI    K ++A V G A 
Sbjct: 93  GD----QRIRGRDGYQYAEGDEADTVDPARAGRLHILE-VQRLIRFMPKVVIAVVPGWAA 147

Query: 111 GGG--------LELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162
           GGG        L LA   HAR       +G          G+G +  L R VG   A E+
Sbjct: 148 GGGHSLHVVCDLTLASREHARFKQTDADVG------SFDGGYG-SAYLARQVGQKFAREI 200

Query: 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 211
             L ++ ++EE   +G ++AVV   EL   +  WA +I  +    +R L
Sbjct: 201 FFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKSPTAMRML 249

Length = 302

>gnl|CDD|168796 PRK07066, PRK07066, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score = 59.1 bits (143), Expect = 3e-09
 Identities = 63/242 (26%), Positives = 106/242 (43%), Gaps = 17/242 (7%)

Query: 308 VRKVAVIGGGLMGSGI---ATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL 364
           ++  A IG G++GSG    A AH L+ +           L   +    AN    + R  L
Sbjct: 7   IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANV----ANAWPALERQGL 62

Query: 365 TQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424
               +   L+ +  +       D D + E+  E   LK ++   + +A  P  I+A++TS
Sbjct: 63  APGASPARLRFVATIEAC--VADADFIQESAPEREALKLELHERISRAAKPDAIIASSTS 120

Query: 425 TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPV 484
            +       + +  +R +  H F+P +++PL+E++  ERT+ + +   M + + +   P+
Sbjct: 121 GLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAMGIYRALGMRPL 180

Query: 485 -VVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIRSFGLPI-----GPFQLLDL 537
            V     GF  +R      + A  LV+ GV     ID AIR FG  I     G F    L
Sbjct: 181 HVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIR-FGAGIRWSFMGTFLTYTL 239

Query: 538 AG 539
           AG
Sbjct: 240 AG 241

Length = 321

>gnl|CDD|132244 TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

 Score = 57.6 bits (139), Expect = 9e-09
 Identities = 57/214 (26%), Positives = 92/214 (42%), Gaps = 24/214 (11%)

Query: 16  AIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVFQKV 73
           A I L NP   N+    +V  +   F  A+S  DV A+V T  G + F  G +   + + 
Sbjct: 39  AWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEY 98

Query: 74  HGAGD-------VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA 126
           + AG+       + L  D+     V+ I  C KP++  V G+ +GGG E+ M     IA 
Sbjct: 99  Y-AGNPQEYRQYMRLFNDM-----VSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQ 152

Query: 127 PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186
                G      G  P  G T  LP ++G  +A+    L +  ++ +  +LG+I  VV +
Sbjct: 153 DLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWSAHKAKRLGIIMDVVPA 212

Query: 187 EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL 220
              LKV   +         P + +    D+ G +
Sbjct: 213 ---LKVDGKFV------ANPLVVTDRYLDEFGRI 237

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 360

>gnl|CDD|178568 PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrolase

 Score = 57.0 bits (137), Expect = 1e-08
 Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 3/159 (1%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           MA+    +      V I+TL  P  +NAL+  +++ L   F        VK ++L G+G 
Sbjct: 5   MASQSQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGR 64

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDV-SVELVVN-LIEDCKKPIVAAVEGLALGGGLELA 117
            F  G D+    +    G+  L  +  S E ++N ++    K  V+ + G+ +GGG  ++
Sbjct: 65  AFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVS 124

Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156
           +    RIA   T   +PE  LG+ P  G +  L RL G 
Sbjct: 125 VHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF 163

Length = 381

>gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score = 55.8 bits (134), Expect = 5e-08
 Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 4/140 (2%)

Query: 20  LINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG 77
           ++N P  +NAL IP+VA LK  +E      D+  +++ G+G  F  G D+     +   G
Sbjct: 56  ILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEG 115

Query: 78  DVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPE 135
           +V         L   V L     KP VA ++G+ +G G  +++    R+   KT    PE
Sbjct: 116 NVEECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPE 175

Query: 136 LTLGVIPGFGGTQRLPRLVG 155
           + +G  P  G +  L RL G
Sbjct: 176 VQMGFHPDAGASYYLSRLPG 195

Length = 407

>gnl|CDD|215151 PLN02267, PLN02267, enoyl-CoA hydratase/isomerase family protein

 Score = 47.8 bits (114), Expect = 7e-06
 Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 20/149 (13%)

Query: 51  AIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL 110
            ++ T  G  FS GFD+   Q    A     +    +  +V  +     P +AAV G A 
Sbjct: 47  VLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAAVTGHAS 106

Query: 111 GGGLELAMGCHARIAAPKTQ--LGLPELTLG-VIPGFGGTQRLPRLVGLSKAI------- 160
             G  LA+  H  +   K +  L + E+ +G  +P           + L +A        
Sbjct: 107 AAGFILAL-SHDYVLMRKDRGVLYMSEVDIGLPLP--------DYFMALLRAKIGSPAAR 157

Query: 161 -EMMLLSKSITSEEGWKLGLIDAVVTSEE 188
            +++L +  +T+EE  ++G++D+   S E
Sbjct: 158 RDVLLRAAKLTAEEAVEMGIVDSAHDSAE 186

Length = 239

>gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 6/141 (4%)

Query: 7   TMEVGND--GVAIITLINPPVN-ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           T+E+  D  G A + L     N A    ++  L    ++  S   ++ ++L G G  FS 
Sbjct: 6   TIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSA 65

Query: 64  GFDINVFQKVHGAGDVSLMPDVS--VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
           G D+   Q+       + + D     EL+ NL    K P +A V+G A GG L L   C 
Sbjct: 66  GADLAWMQQSADLDYNTNLDDARELAELMYNLYR-LKIPTLAVVQGAAFGGALGLISCCD 124

Query: 122 ARIAAPKTQLGLPELTLGVIP 142
             I A   Q  L E+ +G+ P
Sbjct: 125 MAIGADDAQFCLSEVRIGLAP 145

Length = 265

>gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 57/204 (27%), Positives = 80/204 (39%), Gaps = 43/204 (21%)

Query: 13  DGVAIITLINPP-VNALAIPIVAGLKDKFEEA---TSRD-DVKAIVLTGNGGRFSGGFDI 67
             VA ITL  P  +N     IV  + D+ E A     RD D+K IVL G G  FSGG+D 
Sbjct: 13  GPVATITLNRPEQLNT----IVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDF 68

Query: 68  NVFQKVHGAG----DVSLMPD-----------VSVELV-----VNLIEDCKKPIVAAVEG 107
                  G G      ++M D           V+            I    KP++A V G
Sbjct: 69  -------GGGFQHWGEAMMTDGRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHG 121

Query: 108 LALGGGLELAMGCHARIAAPKTQLGLPELTL--GVIPGFGGTQRLPRLVGLSKAIEMMLL 165
             +GG  + A+     IA+    +G P   +    + G      L RL  L+K     L 
Sbjct: 122 WCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLTGMW----LYRL-SLAKVKWHSLT 176

Query: 166 SKSITSEEGWKLGLIDAVVTSEEL 189
            + +T  +  +  LI+  V  E L
Sbjct: 177 GRPLTGVQAAEAELINEAVPFERL 200

Length = 298

>gnl|CDD|216084 pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 5/86 (5%)

Query: 624 IVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTS 683
           +V  +L P++NE+ R++EEG V    D+D A  LG+  P    G    +D VG +  Y  
Sbjct: 3   VVNRLLAPLLNEAIRLVEEG-VATPEDIDAAMRLGLGLPM---GPFELSDLVGLDVGYHI 58

Query: 684 LKKWSQLYGN-FFKPSRFLEERATKG 708
           L+  ++ +G+  ++PS  LE+    G
Sbjct: 59  LEVLAEEFGDRAYRPSPLLEKLVEAG 84

This family also includes lambda crystallin. Some proteins include two copies of this domain. Length = 97

>gnl|CDD|177817 PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score = 43.5 bits (102), Expect = 3e-04
 Identities = 41/170 (24%), Positives = 75/170 (44%), Gaps = 5/170 (2%)

Query: 23  PPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82
           P +NAL   +   L+  ++      ++  +++ G+G  F  G DI     +   G    +
Sbjct: 56  PALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAI 115

Query: 83  PDV--SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGV 140
            +   S+   + L+    KP VA + G+ +GGG  +++    R+A  +T    PE  +G 
Sbjct: 116 REFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGF 175

Query: 141 IPGFGGTQRLPRLVG-LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
            P  G +  L  L G L + + +  L   ++  E    GL    + SEE+
Sbjct: 176 HPDAGASFNLSHLPGRLGEYLGLTGL--KLSGAEMLACGLATHYIRSEEI 223

Length = 401

>gnl|CDD|213787 TIGR03222, benzo_boxC, benzoyl-CoA-dihydrodiol lyase

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 9/121 (7%)

Query: 92  NLIEDCKK----PIVAAVEGLALGGGLELAMGCHARIAAP--KTQLGLPELT-LGVIPGF 144
           N IED  +      +AAV G   GGG ELA+ C   +      + + LPE+  LGV+PG 
Sbjct: 109 NGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPGT 168

Query: 145 GGTQRL--PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA 202
           GG  R+   R V    A     + + +  +   +  L+D VV   +        A ++AA
Sbjct: 169 GGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAA 228

Query: 203 R 203
           +
Sbjct: 229 Q 229

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. Length = 546

>gnl|CDD|181274 PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase; Provisional

 Score = 41.1 bits (97), Expect = 0.002
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 102 VAAVEGLALGGGLELAMGCHARIAAP--KTQLGLPELT-LGVIPGFGGTQRL 150
           +AAV G   GGG ELA+ C   +      + + LPE+  LGV+PG GG  R+
Sbjct: 127 IAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRV 178

Length = 550

>gnl|CDD|236211 PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated

 Score = 39.8 bits (94), Expect = 0.004
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 13/94 (13%)

Query: 624 IVEMILFPVVNESCRVLEEGIVVRAS--DLDDASVLGMSFPSYRGGIVFWADAVGANYVY 681
            V MI    VNE+  + ++GI   AS  D+D A  LG+++P    G + W D +GA  + 
Sbjct: 422 TVAMI----VNEAADIAQQGI---ASPADIDLAMRLGLNYPL---GPLAWGDRLGAARIL 471

Query: 682 TSLKKWSQLYGN-FFKPSRFLEERATKGIPLSAP 714
             L+    LYG+  ++PS +L  RA  G+ L + 
Sbjct: 472 RVLENLQALYGDPRYRPSPWLRRRAALGLSLRSE 505

Length = 507

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	725
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	100.0
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	100.0
PRK11730	715	fadB multifunctional fatty acid oxidation complex	100.0
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	100.0
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	100.0
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	100.0
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	100.0
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	100.0
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	100.0
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
KOG1683	380	consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA	100.0
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	100.0
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	100.0
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
KOG1680	290	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
PRK05862	257	enoyl-CoA hydratase; Provisional	100.0
PRK07658	257	enoyl-CoA hydratase; Provisional	100.0
PRK09076	258	enoyl-CoA hydratase; Provisional	100.0
PRK06143	256	enoyl-CoA hydratase; Provisional	100.0
PRK06142	272	enoyl-CoA hydratase; Provisional	100.0
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	100.0
PRK05980	260	enoyl-CoA hydratase; Provisional	100.0
PRK08150	255	enoyl-CoA hydratase; Provisional	100.0
PRK08140	262	enoyl-CoA hydratase; Provisional	100.0
PRK08139	266	enoyl-CoA hydratase; Validated	100.0
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	100.0
PRK05995	262	enoyl-CoA hydratase; Provisional	100.0
PRK06563	255	enoyl-CoA hydratase; Provisional	100.0
PRK05981	266	enoyl-CoA hydratase; Provisional	100.0
PRK09245	266	enoyl-CoA hydratase; Provisional	100.0
PRK07657	260	enoyl-CoA hydratase; Provisional	100.0
PRK06495	257	enoyl-CoA hydratase; Provisional	100.0
PRK08138	261	enoyl-CoA hydratase; Provisional	100.0
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	100.0
PRK07468	262	enoyl-CoA hydratase; Provisional	100.0
PLN02600	251	enoyl-CoA hydratase	100.0
PLN02888	265	enoyl-CoA hydratase	100.0
PRK06494	259	enoyl-CoA hydratase; Provisional	100.0
PRK06210	272	enoyl-CoA hydratase; Provisional	100.0
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	100.0
PRK07511	260	enoyl-CoA hydratase; Provisional	100.0
PRK07799	263	enoyl-CoA hydratase; Provisional	100.0
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	100.0
PRK08258	277	enoyl-CoA hydratase; Provisional	100.0
PRK08252	254	enoyl-CoA hydratase; Provisional	100.0
PRK06127	269	enoyl-CoA hydratase; Provisional	100.0
PRK07938	249	enoyl-CoA hydratase; Provisional	100.0
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	100.0
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	100.0
PRK06688	259	enoyl-CoA hydratase; Provisional	100.0
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	100.0
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	100.0
PRK07659	260	enoyl-CoA hydratase; Provisional	100.0
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	100.0
PRK07260	255	enoyl-CoA hydratase; Provisional	100.0
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	100.0
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	100.0
PRK08260	296	enoyl-CoA hydratase; Provisional	100.0
PRK06144	262	enoyl-CoA hydratase; Provisional	100.0
PRK08259	254	enoyl-CoA hydratase; Provisional	100.0
PRK06023	251	enoyl-CoA hydratase; Provisional	100.0
PRK07327	268	enoyl-CoA hydratase; Provisional	100.0
PRK05870	249	enoyl-CoA hydratase; Provisional	100.0
PRK06190	258	enoyl-CoA hydratase; Provisional	100.0
PRK05864	276	enoyl-CoA hydratase; Provisional	100.0
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	100.0
PRK12478	298	enoyl-CoA hydratase; Provisional	100.0
PRK07509	262	enoyl-CoA hydratase; Provisional	100.0
PLN02921	327	naphthoate synthase	100.0
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	100.0
PRK06072	248	enoyl-CoA hydratase; Provisional	100.0
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PRK07854	243	enoyl-CoA hydratase; Provisional	100.0
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	100.0
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK07827	260	enoyl-CoA hydratase; Provisional	100.0
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	100.0
PRK08321	302	naphthoate synthase; Validated	100.0
PLN02874	379	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
PRK05869	222	enoyl-CoA hydratase; Validated	100.0
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
KOG1679	291	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
PRK08290	288	enoyl-CoA hydratase; Provisional	100.0
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	100.0
PRK06213	229	enoyl-CoA hydratase; Provisional	100.0
PRK08788	287	enoyl-CoA hydratase; Validated	100.0
PRK08272	302	enoyl-CoA hydratase; Provisional	100.0
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	100.0
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	100.0
KOG1681	292	consensus Enoyl-CoA isomerase [Lipid transport and	100.0
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	100.0
KOG0016	266	consensus Enoyl-CoA hydratase/isomerase [Lipid tra	100.0
COG0447	282	MenB Dihydroxynaphthoic acid synthase [Coenzyme me	100.0
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	100.0
KOG1682	287	consensus Enoyl-CoA isomerase [Lipid transport and	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	100.0
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	100.0
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	100.0
KOG1684	401	consensus Enoyl-CoA hydratase [Lipid transport and	99.97
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	99.94
PF00725	97	3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal	99.9
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	99.87
PF00725	97	3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal	99.78
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.77
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	99.76
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	99.73
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	99.72
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.69
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.67
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.66
PRK07417	279	arogenate dehydrogenase; Reviewed	99.64
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.64
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.63
KOG0409	327	consensus Predicted dehydrogenase [General functio	99.62
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	99.61
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	99.6
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	99.59
PLN02688	266	pyrroline-5-carboxylate reductase	99.59
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.58
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.58
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.57
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	99.56
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	99.56
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.55
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.52
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.52
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	99.51
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	99.51
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	99.49
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	99.48
PRK08507	275	prephenate dehydrogenase; Validated	99.48
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	99.47
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	99.46
PRK06545	359	prephenate dehydrogenase; Validated	99.46
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	99.45
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	99.44
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	99.44
PRK15059	292	tartronate semialdehyde reductase; Provisional	99.44
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	99.44
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	99.44
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	99.44
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	99.43
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	99.43
PRK08655	437	prephenate dehydrogenase; Provisional	99.42
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.41
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	99.41
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	99.41
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.4
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	99.39
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	99.39
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	99.39
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	99.37
PLN02256	304	arogenate dehydrogenase	99.36
PRK11730	715	fadB multifunctional fatty acid oxidation complex	99.36
PLN02858	1378	fructose-bisphosphate aldolase	99.35
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	99.34
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	99.34
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	99.33
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	99.33
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	99.33
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	99.31
PLN02858	1378	fructose-bisphosphate aldolase	99.3
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	99.3
PRK07680	273	late competence protein ComER; Validated	99.28
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	99.28
PRK08818	370	prephenate dehydrogenase; Provisional	99.28
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.27
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	99.27
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	99.23
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	99.23
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	99.21
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	99.2
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	99.2
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	99.18
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	99.18
PLN02353	473	probable UDP-glucose 6-dehydrogenase	99.18
PLN02712	667	arogenate dehydrogenase	99.17
PTZ00431	260	pyrroline carboxylate reductase; Provisional	99.15
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	99.13
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	99.1
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	99.1
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.06
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	99.04
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	99.03
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.03
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	99.01
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	98.99
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	98.99
PLN02712	667	arogenate dehydrogenase	98.98
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.97
PTZ00082	321	L-lactate dehydrogenase; Provisional	98.96
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	98.95
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	98.92
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.91
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	98.9
PRK06223	307	malate dehydrogenase; Reviewed	98.9
PTZ00117	319	malate dehydrogenase; Provisional	98.88
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	98.88
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.87
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.77
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	98.68
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	98.65
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	98.64
PRK06444	197	prephenate dehydrogenase; Provisional	98.61
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.6
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	98.59
cd07015	172	Clp_protease_NfeD Nodulation formation efficiency	98.58
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	98.52
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	98.5
PRK10949	618	protease 4; Provisional	98.5
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	98.49
KOG1683	380	consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA	98.47
PRK13403	335	ketol-acid reductoisomerase; Provisional	98.45
PRK12480	330	D-lactate dehydrogenase; Provisional	98.44
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	98.44
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	98.4
TIGR00112	245	proC pyrroline-5-carboxylate reductase. This enzym	98.39
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	98.39
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	98.32
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.29
PRK00277	200	clpP ATP-dependent Clp protease proteolytic subuni	98.26
PRK13243	333	glyoxylate reductase; Reviewed	98.23
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	98.23
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	98.2
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	98.15
PRK06436	303	glycerate dehydrogenase; Provisional	98.15
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	98.15
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	98.15
PLN03139	386	formate dehydrogenase; Provisional	98.13
PRK07574	385	formate dehydrogenase; Provisional	98.12
PRK15076	431	alpha-galactosidase; Provisional	98.11
PRK11778	330	putative inner membrane peptidase; Provisional	98.09
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	98.07
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	98.07
PRK12553	207	ATP-dependent Clp protease proteolytic subunit; Re	98.07
cd07017	171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	98.07
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.04
PRK08605	332	D-lactate dehydrogenase; Validated	98.04
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	98.02
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	98.01
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	97.99
PLN02602	350	lactate dehydrogenase	97.97
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	97.9
PRK14512	197	ATP-dependent Clp protease proteolytic subunit; Pr	97.9
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	97.9
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	97.89
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	97.89
KOG3124	267	consensus Pyrroline-5-carboxylate reductase [Amino	97.88
PRK12319	256	acetyl-CoA carboxylase subunit alpha; Provisional	97.84
CHL00028	200	clpP ATP-dependent Clp protease proteolytic subuni	97.83
PRK05225	487	ketol-acid reductoisomerase; Validated	97.83
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	97.81
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.81
PF00574	182	CLP_protease: Clp protease; InterPro: IPR001907 In	97.8
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	97.78
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	97.78
TIGR00493	191	clpP ATP-dependent Clp protease, proteolytic subun	97.76
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	97.76
PLN02928	347	oxidoreductase family protein	97.74
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	97.72
PLN03230	431	acetyl-coenzyme A carboxylase carboxyl transferase	97.71
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.69
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.67
PRK05442	326	malate dehydrogenase; Provisional	97.67
PF01972	285	SDH_sah: Serine dehydrogenase proteinase; InterPro	97.66
TIGR00513	316	accA acetyl-CoA carboxylase, carboxyl transferase,	97.64
CHL00198	322	accA acetyl-CoA carboxylase carboxyltransferase al	97.63
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	97.63
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	97.62
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	97.6
PRK05724	319	acetyl-CoA carboxylase carboxyltransferase subunit	97.59
PF01343	154	Peptidase_S49: Peptidase family S49 peptidase clas	97.58
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	97.58
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	97.58
PRK05654	292	acetyl-CoA carboxylase subunit beta; Validated	97.54
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	97.54
PLN00112	444	malate dehydrogenase (NADP); Provisional	97.53
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	97.49
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	97.47
PRK14514	221	ATP-dependent Clp protease proteolytic subunit; Pr	97.47
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	97.47
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	97.46
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	97.46
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	97.46
PLN00106	323	malate dehydrogenase	97.45
PRK13304	265	L-aspartate dehydrogenase; Reviewed	97.44
PRK06932	314	glycerate dehydrogenase; Provisional	97.42
PRK12551	196	ATP-dependent Clp protease proteolytic subunit; Re	97.41
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	97.4
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.4
PRK06487	317	glycerate dehydrogenase; Provisional	97.39
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	97.38
TIGR00515	285	accD acetyl-CoA carboxylase, carboxyl transferase,	97.37
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	97.36
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	97.35
PRK14513	201	ATP-dependent Clp protease proteolytic subunit; Pr	97.35
TIGR03133	274	malonate_beta malonate decarboxylase, beta subunit	97.34
PRK06141	314	ornithine cyclodeaminase; Validated	97.31
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	97.28
CHL00174	296	accD acetyl-CoA carboxylase beta subunit; Reviewed	97.27
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	97.27
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.25
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	97.24
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	97.24
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	97.24
PRK04148	134	hypothetical protein; Provisional	97.24
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	97.22
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	97.2
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.19
TIGR03134	238	malonate_gamma malonate decarboxylase, gamma subun	97.18
PTZ00325	321	malate dehydrogenase; Provisional	97.12
COG1030	436	NfeD Membrane-bound serine protease (ClpP class) [	97.12
PRK10949	618	protease 4; Provisional	97.11
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	97.09
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.06
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	97.06
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	97.03
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	97.02
PLN02306	386	hydroxypyruvate reductase	97.01
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.99
PRK07189	301	malonate decarboxylase subunit beta; Reviewed	96.98
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.98
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	96.98
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	96.97
TIGR00745	293	apbA_panE 2-dehydropantoate 2-reductase. This mode	96.96
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	96.95
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	96.94
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.9
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	96.89
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.89
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	96.89
PRK12552	222	ATP-dependent Clp protease-like protein; Reviewed	96.88
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	96.86
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	96.84
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	96.81
PTZ00075	476	Adenosylhomocysteinase; Provisional	96.8
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	96.77
KOG1495	332	consensus Lactate dehydrogenase [Energy production	96.75
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	96.74
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.74
PRK08618	325	ornithine cyclodeaminase; Validated	96.66
COG4091	438	Predicted homoserine dehydrogenase [Amino acid tra	96.63
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.62
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	96.61
PRK11861	673	bifunctional prephenate dehydrogenase/3-phosphoshi	96.6
COG0740	200	ClpP Protease subunit of ATP-dependent Clp proteas	96.6
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	96.59
PLN02494	477	adenosylhomocysteinase	96.58
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.56
PRK07340	304	ornithine cyclodeaminase; Validated	96.55
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	96.53
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	96.52
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.47
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	96.35
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	96.3
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	96.3
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	96.28
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	96.27
PRK08291	330	ectoine utilization protein EutC; Validated	96.26
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	96.25
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	96.24
COG2910	211	Putative NADH-flavin reductase [General function p	96.23
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	96.21
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	96.21
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.16
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.15
PRK05086	312	malate dehydrogenase; Provisional	96.12
PRK06407	301	ornithine cyclodeaminase; Provisional	96.09
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	96.06
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	96.06
PRK06046	326	alanine dehydrogenase; Validated	96.04
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.02
PLN00203	519	glutamyl-tRNA reductase	96.01
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	95.93
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.87
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	95.86
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	95.82
PRK00961	342	H(2)-dependent methylenetetrahydromethanopterin de	95.81
PRK06823	315	ornithine cyclodeaminase; Validated	95.8
PRK00048	257	dihydrodipicolinate reductase; Provisional	95.69
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	95.67
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.65
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.63
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	95.62
PRK13940	414	glutamyl-tRNA reductase; Provisional	95.62
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	95.6
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	95.57
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	95.55
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	95.52
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	95.45
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	95.45
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	95.41
PRK07589	346	ornithine cyclodeaminase; Validated	95.39
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.34
PRK13303	265	L-aspartate dehydrogenase; Provisional	95.28
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.2
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.18
PRK09496	453	trkA potassium transporter peripheral membrane com	95.12
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	95.08
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	95.07
PRK10669	558	putative cation:proton antiport protein; Provision	95.03
TIGR01723	340	hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr	95.03
COG0777	294	AccD Acetyl-CoA carboxylase beta subunit [Lipid me	95.01
PRK03659	601	glutathione-regulated potassium-efflux system prot	94.99
COG0300	265	DltE Short-chain dehydrogenases of various substra	94.94
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	94.89
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	94.8
PRK09496	453	trkA potassium transporter peripheral membrane com	94.79
PRK06153	393	hypothetical protein; Provisional	94.77
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	94.69
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	94.68
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	94.68
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	94.67
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	94.64
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.63
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	94.61
PRK06719	157	precorrin-2 dehydrogenase; Validated	94.61
PRK12548	289	shikimate 5-dehydrogenase; Provisional	94.6
PRK02318	381	mannitol-1-phosphate 5-dehydrogenase; Provisional	94.58
COG0825	317	AccA Acetyl-CoA carboxylase alpha subunit [Lipid m	94.54
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	94.51
PRK06199	379	ornithine cyclodeaminase; Validated	94.47
PRK08300	302	acetaldehyde dehydrogenase; Validated	94.44
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	94.32
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	94.3
PLN03075	296	nicotianamine synthase; Provisional	94.24
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	94.11
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	94.07
TIGR00036	266	dapB dihydrodipicolinate reductase.	94.06
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	94.05
PRK12829	264	short chain dehydrogenase; Provisional	94.01
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	94.0
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.99
PRK03562	621	glutathione-regulated potassium-efflux system prot	93.97
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	93.96
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	93.93
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	93.86
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	93.84
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	93.8
PRK05562	223	precorrin-2 dehydrogenase; Provisional	93.78
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	93.78
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.73
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.68
PRK12828	239	short chain dehydrogenase; Provisional	93.67
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	93.59
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	93.54
PRK06194	287	hypothetical protein; Provisional	93.4
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	93.38
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	93.36
PRK07326	237	short chain dehydrogenase; Provisional	93.35
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	93.27
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	93.24
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.2
PLN03209	576	translocon at the inner envelope of chloroplast su	93.12
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.08
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	93.06
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.02
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	92.96
PRK08223	287	hypothetical protein; Validated	92.92
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.85
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	92.84
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.82
PLN00016	378	RNA-binding protein; Provisional	92.81
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	92.78
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	92.77
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	92.75
CHL00194	317	ycf39 Ycf39; Provisional	92.75
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	92.72
PRK07877	722	hypothetical protein; Provisional	92.72
PRK07825	273	short chain dehydrogenase; Provisional	92.71
COG4799	526	Acetyl-CoA carboxylase, carboxyltransferase compon	92.68
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	92.65
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	92.63
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	92.61
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	92.57
PRK07831	262	short chain dehydrogenase; Provisional	92.54
PF13766	118	ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PD	92.5
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.47
PRK05866	293	short chain dehydrogenase; Provisional	92.46
COG0673	342	MviM Predicted dehydrogenases and related proteins	92.41
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.41
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	92.37
PRK08340	259	glucose-1-dehydrogenase; Provisional	92.36
PRK07774	250	short chain dehydrogenase; Provisional	92.34
PRK05868	372	hypothetical protein; Validated	92.27
PRK07454	241	short chain dehydrogenase; Provisional	92.26
PRK08267	260	short chain dehydrogenase; Provisional	92.26
PRK08328	231	hypothetical protein; Provisional	92.17
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.17

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=100.00  E-value=2e-130  Score=1137.41  Aligned_cols=699  Identities=34%  Similarity=0.545  Sum_probs=621.3

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEE-EEEcCCCCCcCCCCchhhhhccCCC
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAI-VLTGNGGRFSGGFDINVFQKVHGAG   77 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~--~Nal~~~~~~~l~~~l~~~~~~~~v~~v-Vl~g~g~~F~aG~Dl~~~~~~~~~~   77 (725)
                      |+++++.++. +++|++||||||+  .|+||.+|+.+|.+++++++.|+++|+| |+||.|++||+|+|++++.......
T Consensus        10 ~~~~~~~~~~-~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~   88 (737)
T TIGR02441        10 MARTHRHYEV-KGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQ   88 (737)
T ss_pred             CCCCeEEEEE-ECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChH
Confidence            6778899998 7899999999995  6999999999999999999999999975 5699999999999999986421111


Q ss_pred             cccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCC--ceEeCcccccCCCCCchhhchHhhhhC
Q 004891           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELTLGVIPGFGGTQRLPRLVG  155 (725)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~--a~~~~pe~~~Gl~p~~g~~~~l~r~vG  155 (725)
                      +...+....++++ .+|.++||||||+|||+|+|||++|+|+||||||+++  ++|++||+++|++|++|++++|||++|
T Consensus        89 ~~~~~~~~~~~l~-~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG  167 (737)
T TIGR02441        89 EVTQLSQEGQEMF-ERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTG  167 (737)
T ss_pred             HHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhC
Confidence            1222223345566 6799999999999999999999999999999999987  589999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCCcceecCc-------------chHHHHHHHHHHHHHhcCchhhhhhhccCCCCCh--
Q 004891          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-------------EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL--  220 (725)
Q Consensus       156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~--  220 (725)
                      ..+|++|+++|++++|+||+++||||+|||+             +++.+.+.+++++++..+....+......+...+  
T Consensus       168 ~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~~~~~~~~~~~~~~~~~~~  247 (737)
T TIGR02441       168 VPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVHKITQYVM  247 (737)
T ss_pred             HHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcccCCccccccccCccchhhc
Confidence            9999999999999999999999999999986             5578888888888765432221111001111110  


Q ss_pred             ---HHHHHHHHHHHHH-HHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCCC
Q 004891          221 ---SEAREVLKLARLQ-AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (725)
Q Consensus       221 ---~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  296 (725)
                         ......+..++.+ .++++++||||.+++++++.+...+++++++.|++.|.+++.|++++++++.|+.+|..++.+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~g~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~al~~~f~~~~~~~~~~  327 (737)
T TIGR02441       248 TNPFVRQQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTFESKALIGLFHGQTDCKKNK  327 (737)
T ss_pred             ccchhHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCC
Confidence               1123345555554 457778899999999999999999999999999999999999999999999999999998765


Q ss_pred             CCCCCCCCCCCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCc
Q 004891          297 NVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML  376 (725)
Q Consensus       297 ~~~~~~~~~~~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i  376 (725)
                      .    ...+++++||+|||+|+||++||..++.+|++|+++|++++.++++.+++++.+++.+++|.+++.+.+..++++
T Consensus       328 ~----~~~~~~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i  403 (737)
T TIGR02441       328 F----GKPQRPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNL  403 (737)
T ss_pred             C----CCCCCcccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCe
Confidence            3    124478999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCcccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCee
Q 004891          377 KGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLL  456 (725)
Q Consensus       377 ~~~~~~~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lv  456 (725)
                      +++++++.+++||+|||||||++++|+++|+++++++++++|++||||+++++++++.+.+|+||+|+|||+|++.+++|
T Consensus       404 ~~~~~~~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~Lv  483 (737)
T TIGR02441       404 TPTLDYSGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLL  483 (737)
T ss_pred             EEeCCHHHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHH
Q 004891          457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLD  536 (725)
Q Consensus       457 eii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv~~~dID~~~~~~G~p~Gpf~~~D  536 (725)
                      ||++++.|++++++.+..+++.+||.||+++|+||||+||++.++++|+++++++|+++++||.++.++|+|+|||+++|
T Consensus       484 Evv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGFi~NRi~~~~~~ea~~lv~eGv~~~~ID~a~~~~G~p~GP~~l~D  563 (737)
T TIGR02441       484 EIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGVDPKKLDKLTTKFGFPVGAATLAD  563 (737)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhchHHHHHHHHHHHhhCCCCCC--CcHHHHHHHHcCCCccccCceeeeccCCC--CCCCCCCchhHHHHHhhhccCCCC
Q 004891          537 LAGYGVAAATSKEFDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYEKGS--KPKPDPSVLPIIEECRRLSNIMPG  612 (725)
Q Consensus       537 ~~Gld~~~~~~~~l~~~~~~~~~--~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  612 (725)
                      .+|||+++++.+.+...+++++.  |++++++|+++|++|+|||+|||+|++++  ++..++++..++.....    .|.
T Consensus       564 ~vGld~~~~v~~~l~~~~~~~~~~~~~~~l~~~v~~G~~G~k~G~GfY~y~~~~~~~~~~~~~v~~~~~~~~k----~p~  639 (737)
T TIGR02441       564 EVGVDVAEHVAEDLGKAFGERFGGGSAELLSELVKAGFLGRKSGKGIFIYQEGKKGSKKVNSDADEILAQYKL----PPK  639 (737)
T ss_pred             HhhHHHHHHHHHHHHHhcCcccccccCHHHHHHHHCCCCcccCCCeeEEcCCCCCCcCCCCHHHHHHHHHhcc----Ccc
Confidence            99999999999999999887653  68999999999999999999999998653  35577777666544321    111


Q ss_pred             CCCCccccHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhC
Q 004891          613 GKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYG  692 (725)
Q Consensus       613 ~~~~~~~~~~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~  692 (725)
                        .. ..+.++|.||++++++|||++||+|||+.+++|||.+|++|+|||+|+||||+|+|.+|++.+++.++.|++.++
T Consensus       640 --~~-~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~v~~~~~~l~~~~g  716 (737)
T TIGR02441       640 --AE-VSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKLVDKMEKYAAAYG  716 (737)
T ss_pred             --cc-cCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHHhC
Confidence              00 246789999999999999999999999779999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHc-CCCCC
Q 004891          693 NFFKPSRFLEERATK-GIPLS  712 (725)
Q Consensus       693 ~~~~p~~~l~~~~~~-g~gf~  712 (725)
                      ++|.|+++|++|+++ |++||
T Consensus       717 ~~~~p~~lL~~~~~~~g~~f~  737 (737)
T TIGR02441       717 VQFTPCQLLLDHAKSPGKKFY  737 (737)
T ss_pred             CCcCCCHHHHHHHHhcCCCCC
Confidence            999999999999999 99997

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=100.00  E-value=1.3e-129  Score=1128.80  Aligned_cols=697  Identities=31%  Similarity=0.530  Sum_probs=619.4

Q ss_pred             CCCC--cEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCC-
Q 004891            1 MAAP--RVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-   76 (725)
Q Consensus         1 M~~~--~i~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~-   76 (725)
                      |++.  +++++..+++|++|||||| +.|+||.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++...... 
T Consensus         1 ~~~~~~~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~   80 (714)
T TIGR02437         1 MIYQGKTIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALP   80 (714)
T ss_pred             CCcccceEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCC
Confidence            5555  5778754789999999999 68999999999999999999999999999999999999999999998642111 


Q ss_pred             -CcccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhC
Q 004891           77 -GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG  155 (725)
Q Consensus        77 -~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG  155 (725)
                       .....+....++++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus        81 ~~~~~~~~~~~~~~~-~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG  159 (714)
T TIGR02437        81 DAELIQWLLFANSIF-NKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIG  159 (714)
T ss_pred             HHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhC
Confidence             11112223344566 6799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCC----ChHHHHHHHHHHH
Q 004891          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLG----SLSEAREVLKLAR  231 (725)
Q Consensus       156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  231 (725)
                      ..+|++|+++|++++|++|+++||||+++|.+++.+++.++++++....+.+.+.  +.....    +.......+..++
T Consensus       160 ~~~A~~llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  237 (714)
T TIGR02437       160 ADNALEWIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKLDWKAK--RQPKLEPLKLSKIEAMMSFTTAK  237 (714)
T ss_pred             HHHHHHHHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcCCccccc--CCCCcccccccchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998876543221111  111111    1111111233344


Q ss_pred             H-HHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcce
Q 004891          232 L-QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRK  310 (725)
Q Consensus       232 ~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~~~~~~~~~~~~~~k  310 (725)
                      . ..+++.++||||..++++++.+...+++++++.|++.|.+++.|++++++++.|+.+|..++.+..  ....+++++|
T Consensus       238 ~~~~~~~~~~~pap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~~l~~~ff~~r~~~~~~~~--~~~~~~~i~~  315 (714)
T TIGR02437       238 GMVAQVAGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQYVKGKAKK--ADKIAKDVKQ  315 (714)
T ss_pred             HHHHHhhcCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhHhhcCCCCC--CCCCccccce
Confidence            4 455788999999999999999999999999999999999999999999999999999999876521  1235678999


Q ss_pred             EEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCCCE
Q 004891          311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM  390 (725)
Q Consensus       311 IaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDl  390 (725)
                      |+|||+|+||++||..++.+|++|+++|++++.++++.+++++.+++.+++|.+++++.+..+++++++++++.+++||+
T Consensus       316 v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl  395 (714)
T TIGR02437       316 AAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDI  395 (714)
T ss_pred             EEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988999999


Q ss_pred             EEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCCHHHHH
Q 004891          391 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVIL  470 (725)
Q Consensus       391 VIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~~  470 (725)
                      |||||||++++|+++|+++++++++++|++||||++++++++..+.+|+||+|+|||+|++.+|+|||++|+.|++++++
T Consensus       396 ViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~  475 (714)
T TIGR02437       396 VVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIA  475 (714)
T ss_pred             EEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcCCCHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHH
Q 004891          471 DLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKE  549 (725)
Q Consensus       471 ~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv~~~dID~~~-~~~G~p~Gpf~~~D~~Gld~~~~~~~~  549 (725)
                      .+.++++.+||.||+++|+||||+||++.++++|+++|+++|++|++||.++ .++|||||||+++|.+|||+.+++.+.
T Consensus       476 ~~~~~~~~lgk~pv~v~d~pGfi~NRl~~~~~~ea~~l~~eG~~~~~ID~a~~~~~G~p~GPf~l~D~~Gld~~~~i~~~  555 (714)
T TIGR02437       476 TVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDGADFVRIDKVMEKQFGWPMGPAYLLDVVGIDTGHHAQAV  555 (714)
T ss_pred             HHHHHHHHcCCEEEEeCCcccchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhcCCCccCHHHHHHhhhHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999 789999999999999999999999999


Q ss_pred             HHhhCCCCCC--CcHHHHHHHHcCCCccccCceeeeccCCC----CCCCCCCchhHHHHHhhhccCCCCCCCCccccHHH
Q 004891          550 FDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYEKGS----KPKPDPSVLPIIEECRRLSNIMPGGKVPISVTEKE  623 (725)
Q Consensus       550 l~~~~~~~~~--~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  623 (725)
                      +...++++..  +++++++|+++|++|+|||+|||+|+++.    ++..|+++..++...+.     +    .+.++.++
T Consensus       556 ~~~~~~~~~~~~~~~~l~~~v~~G~lG~K~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~  626 (714)
T TIGR02437       556 MAEGFPDRMGKDGRDAIDALFEAKRLGQKNGKGFYAYEADKKGKPKKLVDSSVLELLKPVVY-----E----QRDFDDEE  626 (714)
T ss_pred             HHHhcCcccccchhHHHHHHHHCCCCcccCCCEEEecccCcCccccCCCCHHHHHHHHHhhc-----c----cCCCCHHH
Confidence            9998887642  56899999999999999999999996431    34466666655543321     0    11467889


Q ss_pred             HHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHHH
Q 004891          624 IVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEE  703 (725)
Q Consensus       624 i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~  703 (725)
                      |.||++++++||+++||+|||+.+++|||.+|++|+|||+|+||||+|+|.+|++.+++.++.+. .++++|.|+++|++
T Consensus       627 i~~Rll~~~~nEa~~ll~eGiva~~~dID~~~~~G~Gfp~~~gGP~~~~D~~Gl~~~~~~~~~~~-~~g~~~~p~~~l~~  705 (714)
T TIGR02437       627 IIARMMIPMINETVRCLEEGIVATAAEADMGLVYGLGFPPFRGGAFRYLDSIGVANFVALADQYA-ELGALYQVTAKLRE  705 (714)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHH-HhCCCCCCCHHHHH
Confidence            99999999999999999999777999999999999999999999999999999999999999765 78899999999999


Q ss_pred             HHHcCCCCC
Q 004891          704 RATKGIPLS  712 (725)
Q Consensus       704 ~~~~g~gf~  712 (725)
                      |+++|++||
T Consensus       706 ~~~~g~~f~  714 (714)
T TIGR02437       706 MAKNGQSFY  714 (714)
T ss_pred             HHHcCCCCC
Confidence            999999997

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=5e-128  Score=1119.03  Aligned_cols=697  Identities=32%  Similarity=0.551  Sum_probs=617.7

Q ss_pred             CCCC--cEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCC
Q 004891            1 MAAP--RVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG   77 (725)
Q Consensus         1 M~~~--~i~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~   77 (725)
                      |++.  ++.++..+++|++|||||| +.|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.......
T Consensus         1 ~~~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~   80 (715)
T PRK11730          1 MIYQGKTLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAP   80 (715)
T ss_pred             CCcccceEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCC
Confidence            6654  5777744689999999999 579999999999999999999999999999999999999999999886421111


Q ss_pred             --cccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhC
Q 004891           78 --DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG  155 (725)
Q Consensus        78 --~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG  155 (725)
                        ....+.....+++ .+|.++||||||+|||+|+|||++|+|+||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus        81 ~~~~~~~~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG  159 (715)
T PRK11730         81 EEELSQWLHFANSIF-NRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIG  159 (715)
T ss_pred             HHHHHHHHHHHHHHH-HHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcC
Confidence              1112222334555 6689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCh----HHHHHHHHHHH
Q 004891          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL----SEAREVLKLAR  231 (725)
Q Consensus       156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  231 (725)
                      ..+|++|+++|++++|+||+++||||+|||++++.+++.++|++++..+..+...  +..+.+..    ......++.++
T Consensus       160 ~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~--~~~~~~p~a~~~~~~~~~~~~~k  237 (715)
T PRK11730        160 ADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLDWKAR--RQPKLEPLKLSKIEAMMSFTTAK  237 (715)
T ss_pred             HHHHHHHHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCccccc--cCcccccccccchhHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999875322211  11111111    11112233333


Q ss_pred             HH-HHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcce
Q 004891          232 LQ-AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRK  310 (725)
Q Consensus       232 ~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~~~~~~~~~~~~~~k  310 (725)
                      +. .|+++++||++..++++++.+...+++++++.|.+.|..++.|+|+++++++|+++|..++.+..  ....++.++|
T Consensus       238 ~~~~~~~~~~~pa~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~~~~~~~~--~~~~~~~i~~  315 (715)
T PRK11730        238 GMVAQKAGKHYPAPMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTNVARALVGIFLNDQYVKGKAKK--LAKDAKPVKQ  315 (715)
T ss_pred             HHHHHhhccCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCC--CCCCccccce
Confidence            33 36788999999999999999999999999999999999999999999999999999999876522  1134567999


Q ss_pred             EEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCCCE
Q 004891          311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM  390 (725)
Q Consensus       311 IaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDl  390 (725)
                      |+|||+|+||.+||..++.+|++|+++|++++.++++.+++++.+++.+++|.+++++.+..+++++++++++.+++||+
T Consensus       316 v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl  395 (715)
T PRK11730        316 AAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFERVDV  395 (715)
T ss_pred             EEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988999999


Q ss_pred             EEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCCHHHHH
Q 004891          391 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVIL  470 (725)
Q Consensus       391 VIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~~  470 (725)
                      |||||||++++|+++|++|++++++++||+||||+++++++++.+.+|+||+|+|||+|++.+++|||++|+.|++++++
T Consensus       396 ViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~  475 (715)
T PRK11730        396 VVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIA  475 (715)
T ss_pred             EEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcCCCHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHH
Q 004891          471 DLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKE  549 (725)
Q Consensus       471 ~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv~~~dID~~~-~~~G~p~Gpf~~~D~~Gld~~~~~~~~  549 (725)
                      .+..+++.+||.||+++|+||||+||++.++++|++.++++|.+++|||.++ .++|+|+|||+++|.+|||+++++.+.
T Consensus       476 ~~~~~~~~lgk~pv~v~d~pGfv~nRi~~~~~~ea~~lv~~Ga~~e~ID~a~~~~~G~~~GP~~~~D~~Gld~~~~~~~~  555 (715)
T PRK11730        476 TVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAV  555 (715)
T ss_pred             HHHHHHHHhCCceEEecCcCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCccCHHHHHHhhchHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999 889999999999999999999999999


Q ss_pred             HHhhCCCCCC--CcHHHHHHHHcCCCccccCceeeeccCCC----CCCCCCCchhHHHHHhhhccCCCCCCCCccccHHH
Q 004891          550 FDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYEKGS----KPKPDPSVLPIIEECRRLSNIMPGGKVPISVTEKE  623 (725)
Q Consensus       550 l~~~~~~~~~--~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  623 (725)
                      ++..++++..  +++++++|+++|++|+|||+|||+|+++.    +..+|+.+..++.....    .+     +.++.++
T Consensus       556 ~~~~~~~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----~~~~~~~  626 (715)
T PRK11730        556 MAEGFPDRMKKDYRDAIDVLFEAKRFGQKNGKGFYRYEEDKKGKPKKEVDPAVYELLAPVVQ----PK-----REFSDEE  626 (715)
T ss_pred             HHHhcCCccccchhHHHHHHHHCCCCccccCCEeEecccCCCcccccCCCHHHHHHHHHhcc----cc-----CCCCHHH
Confidence            9998887643  56899999999999999999999997432    23345555555443211    01     1467889


Q ss_pred             HHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHHH
Q 004891          624 IVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEE  703 (725)
Q Consensus       624 i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~  703 (725)
                      |.||++.+++|||++|+++||+.+|+|||.+|++|+|||+|++|||+++|.+|+|.+++.++.+. .++++|.|+++|++
T Consensus       627 i~nRll~~~~~Ea~~ll~eGvva~~~dID~a~~~g~G~p~~~gGPf~~~D~~Gld~~~~~~~~~~-~~~~~~~p~~~L~~  705 (715)
T PRK11730        627 IIARMMIPMINEVVRCLEEGIVASPAEADMALVYGLGFPPFRGGAFRYLDTLGVANYVALADKYA-HLGPLYQVPEGLRE  705 (715)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCcCCHHHHHHHhCHHHHHHHHHHHH-HcCCCCCCCHHHHH
Confidence            99999999999999999999855999999999999999999999999999999999999999875 58899999999999


Q ss_pred             HHHcCCCCC
Q 004891          704 RATKGIPLS  712 (725)
Q Consensus       704 ~~~~g~gf~  712 (725)
                      |+++|++||
T Consensus       706 ~v~~~~~f~  714 (715)
T PRK11730        706 MAANGESYY  714 (715)
T ss_pred             HHHcCCCCC
Confidence            999999997

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=100.00  E-value=4.4e-127  Score=1108.58  Aligned_cols=688  Identities=34%  Similarity=0.583  Sum_probs=608.0

Q ss_pred             EEEEEecCcEEEEEeCCC--CCCCCCHHHHHHHHHHHHHHhcCCCceEEEE-EcCCCCCcCCCCchhhhhccCCCccccc
Q 004891            6 VTMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (725)
Q Consensus         6 i~~~~~~~~v~~i~l~~p--~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl-~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (725)
                      ++++..+++|++||||||  +.|+||.+|+++|.+++++++.|+++|+||| +|.|++||+|+|++++.......+...+
T Consensus         2 ~~~~~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~   81 (699)
T TIGR02440         2 FTLTVREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKAL   81 (699)
T ss_pred             eEEEEcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHH
Confidence            445554789999999999  3799999999999999999999999999997 6888999999999998542111111122


Q ss_pred             chhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCC--ceEeCcccccCCCCCchhhchHhhhhCHHHHH
Q 004891           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (725)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~--a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~  160 (725)
                      ....+.++ +.|.++||||||+|||+|+|||++|+|+||+|||+++  ++|++||+++|++|++|++++|+|++|..+|+
T Consensus        82 ~~~~~~~~-~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~  160 (699)
T TIGR02440        82 AQQGQVLF-AELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTAL  160 (699)
T ss_pred             HHHHHHHH-HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHH
Confidence            23344556 6699999999999999999999999999999999975  79999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCC--CChHHHHHHHHHHHH-HHHHh
Q 004891          161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKL--GSLSEAREVLKLARL-QAKKT  237 (725)
Q Consensus       161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~  237 (725)
                      +|+++|++++|+||+++||||+|||++++.+++.++|++.  ..+ . +......++  .+.......+..+.+ ..+++
T Consensus       161 ~llltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~--~~~-~-~~~~~~~~~~~~~~~a~~~~~~~~~k~~~~~~  236 (699)
T TIGR02440       161 DMILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKG--KPI-R-KPLSLQERLLEGTPLGRALLFDQAAKKTAKKT  236 (699)
T ss_pred             HHHHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhC--CCC-C-CCccchhhhcccCchhHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999751  000 0 000000000  000111112222333 34578


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcceEEEEcCC
Q 004891          238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGG  317 (725)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~~~~~~~~~~~~~~kIaVIG~G  317 (725)
                      +++|||+..+|++++.+...+++++++.|.+.|..++.|+|+++++++|+.++..++.++. .  ..+++++||+|||+|
T Consensus       237 ~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~~~~~~~~~~~-~--~~~~~i~~v~ViGaG  313 (699)
T TIGR02440       237 QGNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFATTEMKKETGS-D--ATPAKIKKVGILGGG  313 (699)
T ss_pred             ccCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCC-C--CCcccccEEEEECCc
Confidence            8899999999999999999999999999999999999999999999999999999876552 2  234679999999999


Q ss_pred             CCcHHHHHHHH-HCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCCCEEEEecc
Q 004891          318 LMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVI  396 (725)
Q Consensus       318 ~mG~~iA~~l~-~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVIeavp  396 (725)
                      .||++||..++ ++|++|+++|++++.++++.+++.+.+++.++++.+++++.+..+++|+++++++.+++||+||||||
T Consensus       314 ~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~adlViEav~  393 (699)
T TIGR02440       314 LMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGFKDVDIVIEAVF  393 (699)
T ss_pred             HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHhccCCEEEEecc
Confidence            99999999998 58999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCCHHHHHHHHHHH
Q 004891          397 ESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVG  476 (725)
Q Consensus       397 e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~~~~~~l~  476 (725)
                      |++++|+++|++|++++++++||+||||+++++++++.+.+|+||+|+|||||++.+++|||++++.|++++++.+..++
T Consensus       394 E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~  473 (699)
T TIGR02440       394 EDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALA  473 (699)
T ss_pred             ccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHhhCCC
Q 004891          477 KIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPD  556 (725)
Q Consensus       477 ~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv~~~dID~~~~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~  556 (725)
                      +.+||.||+++|.||||+||++.++++|+++++++|++++|||.++.++|||+|||+++|.+|+|+++++++.+++.+++
T Consensus       474 ~~~gk~pv~v~d~pGfi~nRl~~~~~~Ea~~l~~~G~~~~dID~a~~~~G~p~GPf~l~D~vGld~~~~i~~~l~~~~~~  553 (699)
T TIGR02440       474 KKQGKTPIVVADKAGFYVNRILAPYMNEAARLLLEGEPVEHIDKALVKFGFPVGPITLLDEVGIDVGAKISPILEAELGE  553 (699)
T ss_pred             HHcCCeEEEEccccchHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCcCHHHHHHHhchHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999998899999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHHcCCCccccCceeeeccCCC-CCCCCCCchhHHHHHhhhccCCCCCCCCccccHHHHHHHHHHHHHHH
Q 004891          557 RSFQSPLVDLLLKSGRNGKANGKGLYTYEKGS-KPKPDPSVLPIIEECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNE  635 (725)
Q Consensus       557 ~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~e  635 (725)
                      ++.|++++++|+++|++|+|||+|||+|++++ ++.+++.+..++.       ..+    ...++..++.||++.+++||
T Consensus       554 ~~~~~~~l~~~v~~G~lG~ksg~GfY~y~~~~~~~~~~~~~~~~~~-------~~~----~~~~~~g~v~~Rll~~~~~E  622 (699)
T TIGR02440       554 RFKAPAVFDKLLSDDRKGRKNGKGFYLYGAATKKKAVDESVYGLLG-------IKP----GVDKEASAVAERCVMLMLNE  622 (699)
T ss_pred             CCCCcHHHHHHHHCCCCcccCCcEEEeCCCCCCcCCCCHHHHHHhC-------cCC----CCCCCHHHHHHHHHHHHHHH
Confidence            87789999999999999999999999998643 3445544443321       111    01467889999999999999


Q ss_pred             HHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCCCCC
Q 004891          636 SCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLS  712 (725)
Q Consensus       636 a~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~gf~  712 (725)
                      |++|+++||+.+|+|||++|++|+|||+|++|||+|+|.+|++.+++.++.+++.++++|.|+++|++|+++|+.||
T Consensus       623 a~~ll~eGvva~~~dID~~~~~g~G~p~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~g~~~~p~~~L~~~~~~~~~f~  699 (699)
T TIGR02440       623 AVRCLDEGVIRSPRDGDIGAIFGIGFPPFLGGPFRYIDTLGADNVVKILERLQTQYGDRFTPCQRLVAMAAEKQSFY  699 (699)
T ss_pred             HHHHHHCCCcCCHHHHHHHHHhcCCCCCCcCCHHHHHHHhCHHHHHHHHHHHHHHcCCCcCCCHHHHHHHHcCCCcC
Confidence            99999999966999999999999999999999999999999999999999999999999999999999999999997

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=2e-126  Score=1106.14  Aligned_cols=690  Identities=35%  Similarity=0.577  Sum_probs=611.4

Q ss_pred             cEEEEEecCcEEEEEeCCC--CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCcccc
Q 004891            5 RVTMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSL   81 (725)
Q Consensus         5 ~i~~~~~~~~v~~i~l~~p--~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~   81 (725)
                      .++++.++++|++||||||  +.|+||.+|+++|.+++++++.|+++|+|||+|.+ ++||+|+|++++...........
T Consensus         6 ~~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~   85 (708)
T PRK11154          6 AFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEA   85 (708)
T ss_pred             eEEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHH
Confidence            4677775689999999999  57999999999999999999999999999999864 89999999998854221111112


Q ss_pred             cchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCC--ceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (725)
Q Consensus        82 ~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~--a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  159 (725)
                      +....++++ ++|.++||||||+|||+|+|||++|+++||+|||+++  ++|++||+++|++|++|++++|++++|..+|
T Consensus        86 ~~~~~~~~~-~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A  164 (708)
T PRK11154         86 LARQGQQLF-AEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTA  164 (708)
T ss_pred             HHHHHHHHH-HHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHHH
Confidence            223344555 6799999999999999999999999999999999986  5899999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCC--ChHHHHHHHHHHHHH-HHH
Q 004891          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLG--SLSEAREVLKLARLQ-AKK  236 (725)
Q Consensus       160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~  236 (725)
                      ++|+++|++++|+||+++||||+|+|++++.+++.++|+++....+ .   .....++.  +.......+..++.. .++
T Consensus       165 ~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~~~-~---~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  240 (708)
T PRK11154        165 LDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPARR-P---LPVRERLLEGNPLGRALLFKQARKKTLAK  240 (708)
T ss_pred             HHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcCCccC-c---CCchhhhcccCchhHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999988421111 0   00000000  011112233344444 347


Q ss_pred             hCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcceEEEEcC
Q 004891          237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGG  316 (725)
Q Consensus       237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~~~~~~~~~~~~~~kIaVIG~  316 (725)
                      ++++|||+..+|++++.+...+++++++.|.+.|..++.|+|+++++++|+.++..++.+.. .  ..+++++||+|||+
T Consensus       241 ~~g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~~~~~~~~~~~-~--~~~~~i~~v~ViGa  317 (708)
T PRK11154        241 TQGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFATTEMKKDTGS-D--AKPRPVNKVGVLGG  317 (708)
T ss_pred             cccCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCC-C--CCCCcccEEEEECC
Confidence            88899999999999999999999999999999999999999999999999999998876552 2  23468999999999


Q ss_pred             CCCcHHHHHHHH-HCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCCCEEEEec
Q 004891          317 GLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAV  395 (725)
Q Consensus       317 G~mG~~iA~~l~-~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVIeav  395 (725)
                      |.||++||..++ .+|++|+++|++++.++++.+++++.+++.+++|.+++.+.+..+++|+++++++++++||+|||||
T Consensus       318 G~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav  397 (708)
T PRK11154        318 GLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEAV  397 (708)
T ss_pred             chhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHHhccCCEEeecc
Confidence            999999999999 8899999999999999999999999999999999999999999999999999999899999999999


Q ss_pred             cCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCCHHHHHHHHHH
Q 004891          396 IESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTV  475 (725)
Q Consensus       396 pe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~~~~~~l  475 (725)
                      ||++++|+++|++++++++|++||+||||+++++++++.+.+|+||+|+|||+|++.+|+|||++|+.|++++++.+..+
T Consensus       398 ~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~  477 (708)
T PRK11154        398 FEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVAL  477 (708)
T ss_pred             cccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHhhCC
Q 004891          476 GKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFP  555 (725)
Q Consensus       476 ~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv~~~dID~~~~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~  555 (725)
                      ++.+||.||+++|+||||+||++.++++|+++++++|++++|||.++.++|||+|||+++|.+|+|+++++++.+++.++
T Consensus       478 ~~~~gk~pv~v~d~pGfi~nRl~~~~~~EA~~lv~eGv~~~dID~a~~~~G~p~GPf~~~D~~Gld~~~~i~~~l~~~~~  557 (708)
T PRK11154        478 AKKQGKTPIVVRDGAGFYVNRILAPYINEAARLLLEGEPIEHIDAALVKFGFPVGPITLLDEVGIDVGTKIIPILEAALG  557 (708)
T ss_pred             HHHcCCceEEEeccCcHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHHHhhhHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999889999999999999999999999999999998


Q ss_pred             CCCCCcHHHHHHHHcCCCccccCceeeeccCCCC---CCCCCCchhHHHHHhhhccCCCCCCCCccccHHHHHHHHHHHH
Q 004891          556 DRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK---PKPDPSVLPIIEECRRLSNIMPGGKVPISVTEKEIVEMILFPV  632 (725)
Q Consensus       556 ~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~  632 (725)
                      +++.|++++++|+++|++|+|||+|||+|+++..   +..++.+...+.       ..+    .++++..+|.||++.++
T Consensus       558 ~~~~~~~~l~~~v~~g~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~-------~~~----~~~~~~g~i~~Rll~~~  626 (708)
T PRK11154        558 ERFSAPAAFDKLLNDDRKGRKNGRGFYLYGQKGKKSKKQVDESVYPLLG-------ITP----QSRLSANEIAERCVMLM  626 (708)
T ss_pred             CCCCCCHHHHHHHHCCCCcccCCceEEECCCCcccccccCCHHHHHHhc-------cCC----CCCCCHHHHHHHHHHHH
Confidence            8777889999999999999999999999975322   334444433321       111    11478899999999999


Q ss_pred             HHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCCCCC
Q 004891          633 VNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLS  712 (725)
Q Consensus       633 ~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~gf~  712 (725)
                      +|||++|+++||+.+++|||.+|++|+|||+|+||||+++|.+|++.+++.++.|++.++++|.|+++|++|+++|++||
T Consensus       627 ~nEa~~ll~eGvva~~~dID~~~~~G~G~p~~~gGp~~~~D~~Gld~~~~~~~~l~~~~~~~~~p~~~l~~~~~~~~~f~  706 (708)
T PRK11154        627 LNEAVRCLDEGIIRSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGDRFTPCERLVEMAERGESFY  706 (708)
T ss_pred             HHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHhcCCccCCCHHHHHHHHcCCCCC
Confidence            99999999999966999999999999999999999999999999999999999999999999999999999999999996


Q ss_pred             C
Q 004891          713 A  713 (725)
Q Consensus       713 ~  713 (725)
                      .
T Consensus       707 ~  707 (708)
T PRK11154        707 P  707 (708)
T ss_pred             C
Confidence            3

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=100.00  E-value=1.4e-73  Score=635.98  Aligned_cols=403  Identities=32%  Similarity=0.520  Sum_probs=358.3

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      +++||+|||+|.||++||.+++++|++|++||++++.++++.+++++.++.++++|.+++++.+..+++++.+++++.++
T Consensus         4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~   83 (503)
T TIGR02279         4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA   83 (503)
T ss_pred             CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999998889


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCCH
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA  466 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~  466 (725)
                      +||+|||||||+.++|+.+|+++.+.+++++||+||||++++++++..+.+|.+++|+|||+|++.++++|+++|+.|++
T Consensus        84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~g~~Ts~  163 (503)
T TIGR02279        84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAA  163 (503)
T ss_pred             CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004891          467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA  544 (725)
Q Consensus       467 e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~G-v~~~dID~~~-~~~G~p~Gpf~~~D~~Gld~~~  544 (725)
                      ++++++.++++.+||.||+++++|||++||++.++++|++.++++| ++|++||.++ .++|||||||+++|++|+|+.+
T Consensus       164 e~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~~~~G~~mGPf~l~D~~Gldv~~  243 (503)
T TIGR02279       164 EVAEQLYETALAWGKQPVHCHSTPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVNF  243 (503)
T ss_pred             HHHHHHHHHHHHcCCeeeEeCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhhhHHHH
Confidence            9999999999999999999999999999999999999999999998 5999999999 7899999999999999999999


Q ss_pred             HHHHHHHhhC-CCCCC-CcHHHHHHHHcCCCccccCceeeeccCCCCCCCC-----------------------------
Q 004891          545 ATSKEFDKAF-PDRSF-QSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPD-----------------------------  593 (725)
Q Consensus       545 ~~~~~l~~~~-~~~~~-~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~~~~~~-----------------------------  593 (725)
                      ++++.+++.+ +++.| |++++++|+++|++|+|||+|||+|+++......                             
T Consensus       244 ~v~~~~~~~~~~~~~~~p~~~~~~~v~~G~lG~KtG~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (503)
T TIGR02279       244 AVTCSVFNAFWQDRRFLPSLVQQELVIAGRLGRKSGLGVYDYREEAEAVVPLEAVSDSFSPRVTVVGDIGAAAPLLARLE  323 (503)
T ss_pred             HHHHHHHHHhcCCCCCCCcHHHHHHHHCCCCccccCCEeeeCCCCCCCCCCccccccccccceeecccccchhhHHHHHH
Confidence            9999988874 56555 7889999999999999999999999764322111                             


Q ss_pred             -----------------------------------------CCchhHHHHHhhhcc--CCCC------------------
Q 004891          594 -----------------------------------------PSVLPIIEECRRLSN--IMPG------------------  612 (725)
Q Consensus       594 -----------------------------------------~~~~~~~~~~~~~~~--~~~~------------------  612 (725)
                                                               +++..++...+....  +.+.                  
T Consensus       324 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~vEv~~~~~Ts~e~~~~a~~~~~~~  403 (503)
T TIGR02279       324 AAGIKVEKKSGRGVTQIGDALLALTDGRTAQARAIELARPNLVLFDLVLDYSTGKRIAIAAAAVNPDSATRKAIYYLQQA  403 (503)
T ss_pred             hccccccccccccccccchhhhhhccccchhhhhhhcCCCCchHHHHHhhhcccCeEEEeCCCCCCHHHHHHHHHHHHHc
Confidence                                                     000000000000000  0110                  


Q ss_pred             CCCCccccH--HHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHH
Q 004891          613 GKVPISVTE--KEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQL  690 (725)
Q Consensus       613 ~~~~~~~~~--~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~  690 (725)
                      ++.+..+.+  ..|+||++++++|||++++++||+ +++|||.+|++|+|||+   |||+|+|.+|+|.++++++.|++.
T Consensus       404 Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGva-s~~dID~a~~~g~G~P~---GP~~~~D~~Gld~~~~~l~~l~~~  479 (503)
T TIGR02279       404 GKKVLQIADYPGLLILRTVAMLANEAADAVLQGVA-SAQDIDTAMRLGVNYPY---GPLAWAAQLGWQRILRVLENLQHH  479 (503)
T ss_pred             CCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCc---CHHHHHHHhCHHHHHHHHHHHHHH
Confidence            111101222  579999999999999999999999 99999999999999999   999999999999999999999999


Q ss_pred             hC-CCCCCCHHHHHHHHcCCCCCC
Q 004891          691 YG-NFFKPSRFLEERATKGIPLSA  713 (725)
Q Consensus       691 ~~-~~~~p~~~l~~~~~~g~gf~~  713 (725)
                      ++ ++|.|+++|+++++.|.+|.+
T Consensus       480 ~~~~~~~p~~~L~~~v~~g~~~~~  503 (503)
T TIGR02279       480 YGEERYRPSSLLRRRALLGSGYED  503 (503)
T ss_pred             cCCCcCCcCHHHHHHHHcCCCcCC
Confidence            98 499999999999999999853

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=100.00  E-value=5.5e-72  Score=625.34  Aligned_cols=405  Identities=31%  Similarity=0.544  Sum_probs=360.6

Q ss_pred             CCCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccc
Q 004891          305 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (725)
Q Consensus       305 ~~~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (725)
                      .++++||+|||+|.||++||.+++++|++|++||++++.++++.+++++.+++++++|.++.++.+..+++++.+++++.
T Consensus         4 ~~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~   83 (507)
T PRK08268          4 LPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD   83 (507)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCC
Q 004891          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT  464 (725)
Q Consensus       385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t  464 (725)
                      +++||+|||||||+.++|+.+|++++..+++++|++||||++++++++..+.+|+||+|+|||+|++.++++|+++|+.|
T Consensus        84 ~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~T  163 (507)
T PRK08268         84 LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLAT  163 (507)
T ss_pred             hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCCccHHHHHHhhchHH
Q 004891          465 SAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLPIGPFQLLDLAGYGV  542 (725)
Q Consensus       465 ~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~G-v~~~dID~~~-~~~G~p~Gpf~~~D~~Gld~  542 (725)
                      ++++++++.++++.+||.|++++++|||++||++.++++|++.++++| +++++||.++ .++|||||||+++|.+|+|+
T Consensus       164 s~~~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al~~~~G~~mGPf~l~D~~Gldv  243 (507)
T PRK08268        164 DPAVADALYALARAWGKTPVRAKDTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLDV  243 (507)
T ss_pred             CHHHHHHHHHHHHHcCCceEEecCCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhchHH
Confidence            999999999999999999999999999999999999999999999998 5999999999 78999999999999999999


Q ss_pred             HHHHHHHHHhhC-CCCCC-CcHHHHHHHHcCCCccccCceeeeccCCCC-CCCCCCc--------------------hhH
Q 004891          543 AAATSKEFDKAF-PDRSF-QSPLVDLLLKSGRNGKANGKGLYTYEKGSK-PKPDPSV--------------------LPI  599 (725)
Q Consensus       543 ~~~~~~~l~~~~-~~~~~-~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~~-~~~~~~~--------------------~~~  599 (725)
                      .+++.+.+...+ ++..| +++++++|+++|++|+|||+|||+|+++++ +.++++.                    ..+
T Consensus       244 ~~~v~~~~~~~~~~~~~~~~~~~~~~lv~~g~lG~ksG~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (507)
T PRK08268        244 NHAVMESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGFYRYADGAKQPPAEAAPPAALPPVWVSADVEGDLAALARL  323 (507)
T ss_pred             HHHHHHHHHHHhcCCCcCCccHHHHHHHHCCCCccccCCeeeECCCCCCCCCCCccccccCccccccccccchhHHHHHH
Confidence            999999988764 44444 789999999999999999999999975432 2222221                    111


Q ss_pred             HHH----------------------------Hhhhc-----------cCCCCCC-CCccc--------------------
Q 004891          600 IEE----------------------------CRRLS-----------NIMPGGK-VPISV--------------------  619 (725)
Q Consensus       600 ~~~----------------------------~~~~~-----------~~~~~~~-~~~~~--------------------  619 (725)
                      +..                            .....           -+.|... ++.++                    
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~  403 (507)
T PRK08268        324 LERLGATIETGEGPSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQ  403 (507)
T ss_pred             HHhhccccccccccccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence            100                            00000           0001000 00011                    


Q ss_pred             ----------cHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHH
Q 004891          620 ----------TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQ  689 (725)
Q Consensus       620 ----------~~~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~  689 (725)
                                +...|.||++.+++|||++|+++||+ |++|||.+|++|+|||+   |||+|+|.+|++.++++++.+++
T Consensus       404 ~gk~pi~v~d~~Gfi~nRll~~~~nEa~~ll~eGva-s~~dID~a~~~g~G~p~---GP~~~~D~~Gld~~~~~~~~l~~  479 (507)
T PRK08268        404 DGKAVSVIRDSPGFVAQRTVAMIVNEAADIAQQGIA-SPADIDLAMRLGLNYPL---GPLAWGDRLGAARILRVLENLQA  479 (507)
T ss_pred             cCCeeEEeCCCccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCc---CHHHHHHHhCHHHHHHHHHHHHH
Confidence                      35579999999999999999999998 99999999999999999   99999999999999999999999


Q ss_pred             HhCC-CCCCCHHHHHHHHcCCCCCC
Q 004891          690 LYGN-FFKPSRFLEERATKGIPLSA  713 (725)
Q Consensus       690 ~~~~-~~~p~~~l~~~~~~g~gf~~  713 (725)
                      .+++ +|.|+++|++|+++|+.||.
T Consensus       480 ~~g~~~~~p~~ll~~~v~~G~~~~~  504 (507)
T PRK08268        480 LYGDPRYRPSPWLRRRAALGLSLRS  504 (507)
T ss_pred             HhCCCcCCcCHHHHHHHHcCCCcCC
Confidence            9995 99999999999999999976

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=100.00  E-value=6.3e-64  Score=514.95  Aligned_cols=280  Identities=40%  Similarity=0.682  Sum_probs=271.2

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      .++||+|||+|.||++||..++.+|++|+++|++++.++++...+.+.+++++++|.+++++.+..++++++++++.+++
T Consensus         2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~   81 (307)
T COG1250           2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALK   81 (307)
T ss_pred             CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhc
Confidence            57999999999999999999999889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCCH
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA  466 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~  466 (725)
                      +||+|||+|+|++++|+++|++++.+++|++|++||||+++++++++.+.+|+||+|+|||||++.|++|||++|..|++
T Consensus        82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~  161 (307)
T COG1250          82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSD  161 (307)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004891          467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA  544 (725)
Q Consensus       467 e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv-~~~dID~~~-~~~G~p~Gpf~~~D~~Gld~~~  544 (725)
                      ++++++.+|.+.+||.|++++|.||||+||++.++++||++++++|+ +|++||.++ .++|||||||+++|.+|+|+.+
T Consensus       162 e~~~~~~~~~~~igK~~vv~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~pmGpf~l~D~~GlD~~~  241 (307)
T COG1250         162 ETVERVVEFAKKIGKTPVVVKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVML  241 (307)
T ss_pred             HHHHHHHHHHHHcCCCCEeecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCccHHHHHHHHhHHHHH
Confidence            99999999999999999888999999999999999999999999995 999999999 7899999999999999999999


Q ss_pred             HHHHHHHhhCCCC-CC-CcHHHHHHHHcCCCccccCceeeeccC
Q 004891          545 ATSKEFDKAFPDR-SF-QSPLVDLLLKSGRNGKANGKGLYTYEK  586 (725)
Q Consensus       545 ~~~~~l~~~~~~~-~~-~~~~l~~~v~~g~~G~k~g~Gfy~y~~  586 (725)
                      ++++.+++.++++ .+ |++++++|++.|++|+|||+|||+|++
T Consensus       242 ~i~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~Ksg~GfY~y~~  285 (307)
T COG1250         242 HIMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRG  285 (307)
T ss_pred             HHHHHHHHhcCCCccccccHHHHHHHhcccccccCCCcceeccc
Confidence            9999999888843 44 789999999999999999999999975

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=100.00  E-value=9e-63  Score=464.41  Aligned_cols=280  Identities=33%  Similarity=0.592  Sum_probs=266.3

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHH-----HHhhcCccccc
Q 004891          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKA-----NNALKMLKGVL  380 (725)
Q Consensus       306 ~~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~-----~~~~~~i~~~~  380 (725)
                      .+++.|+|||+|.||++||+..+.+|++|+++|.+++.+.++.+.|.+.+.+...++..+....     +..+.+|..++
T Consensus         9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t   88 (298)
T KOG2304|consen    9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST   88 (298)
T ss_pred             ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence            3678999999999999999999999999999999999999999999999999998887765543     67788999999


Q ss_pred             Cc-ccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEe
Q 004891          381 DY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV  459 (725)
Q Consensus       381 ~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii  459 (725)
                      +. +.++++|+|||++.|++++|+.+|++|+..+++++|++||||++.+++++..+.+|.||.|+|||||++.|++||++
T Consensus        89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvEVi  168 (298)
T KOG2304|consen   89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVEVI  168 (298)
T ss_pred             CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhhhh
Confidence            98 66799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHh
Q 004891          460 RTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDL  537 (725)
Q Consensus       460 ~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv-~~~dID~~~-~~~G~p~Gpf~~~D~  537 (725)
                      .+..|++|+++.+..|.+.+||++|-++|.||||+||++.+|++||+++++.|. +.+|||.+| .|.|+|||||++.|.
T Consensus       169 r~~~TS~eTf~~l~~f~k~~gKttVackDtpGFIVNRlLiPyl~ea~r~yerGdAskeDIDtaMklGagyPMGPfEL~Dy  248 (298)
T KOG2304|consen  169 RTDDTSDETFNALVDFGKAVGKTTVACKDTPGFIVNRLLIPYLMEAIRMYERGDASKEDIDTAMKLGAGYPMGPFELADY  248 (298)
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCceeecCCCchhhhHHHHHHHHHHHHHHHhcCCcHhhHHHHHhccCCCCCChHHHHHH
Confidence            999999999999999999999999999999999999999999999999999996 999999999 999999999999999


Q ss_pred             hchHHHHHHHHHHHhhCCCC-CC-CcHHHHHHHHcCCCccccCceeeecc
Q 004891          538 AGYGVAAATSKEFDKAFPDR-SF-QSPLVDLLLKSGRNGKANGKGLYTYE  585 (725)
Q Consensus       538 ~Gld~~~~~~~~l~~~~~~~-~~-~~~~l~~~v~~g~~G~k~g~Gfy~y~  585 (725)
                      +|||++..+++.+++.+++. .| |+|++.++|++|++|+|+|+|||+|.
T Consensus       249 vGLDt~kfvmdgwhe~~pe~~~f~psPll~klVaegklGrKtg~GfY~Yk  298 (298)
T KOG2304|consen  249 VGLDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGKLGRKTGEGFYKYK  298 (298)
T ss_pred             hhHHHHHHHHHHHHhcCCcccccCCChHHHHHHhccccccccCccceecC
Confidence            99999999999999998553 44 99999999999999999999999993

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=8.9e-59  Score=485.04  Aligned_cols=280  Identities=34%  Similarity=0.558  Sum_probs=270.7

Q ss_pred             CCCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccc
Q 004891          305 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (725)
Q Consensus       305 ~~~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (725)
                      .++++||+|||+|.||.+||..++++|++|++||++++.++++.+++++.+++++++|.+++.+.+..+++++.+++++.
T Consensus         2 ~~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~   81 (286)
T PRK07819          2 SDAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD   81 (286)
T ss_pred             CCCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHHhC-CCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCC
Q 004891          385 FKDVDMVIEAVIESVPLKQKIFSELEKAC-PPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTER  463 (725)
Q Consensus       385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~-~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~  463 (725)
                      +++||+|||||||++++|+++|.++++.+ ++++|++||||+++++.++....+++|++|+|||+|++.++++||+++..
T Consensus        82 ~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~  161 (286)
T PRK07819         82 FADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLV  161 (286)
T ss_pred             hCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCC
Confidence            99999999999999999999999999999 89999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHH-HcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhch
Q 004891          464 TSAQVILDLMTVGK-IIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGY  540 (725)
Q Consensus       464 t~~e~~~~~~~l~~-~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv-~~~dID~~~-~~~G~p~Gpf~~~D~~Gl  540 (725)
                      |++++++++.+++. .+||.|++++|.|||++||++.+++||+++|+++|+ +++|||.++ .++|||+|||+++|.+|+
T Consensus       162 T~~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~nRi~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~G~p~Gpf~~~D~~Gl  241 (286)
T PRK07819        162 TSEATVARAEEFASDVLGKQVVRAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMVLGCAHPMGPLRLSDLVGL  241 (286)
T ss_pred             CCHHHHHHHHHHHHHhCCCCceEecCCCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhcc
Confidence            99999999999988 599999999999999999999999999999999997 999999999 899999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCCC-CcHHHHHHHHcCCCccccCceeeec
Q 004891          541 GVAAATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKANGKGLYTY  584 (725)
Q Consensus       541 d~~~~~~~~l~~~~~~~~~-~~~~l~~~v~~g~~G~k~g~Gfy~y  584 (725)
                      |+++++++.+++.+++++| |++++++|+++|++|+|+|+|||+|
T Consensus       242 d~~~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~GfY~y  286 (286)
T PRK07819        242 DTVKAIADSMYEEFKEPLYAPPPLLLRMVEAGLLGKKSGRGFYTY  286 (286)
T ss_pred             HHHHHHHHHHHHHcCCCCCCCCHHHHHHHHCCCCcccCCCEeccC
Confidence            9999999999999988555 8899999999999999999999998

>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=5e-60  Score=480.65  Aligned_cols=378  Identities=39%  Similarity=0.642  Sum_probs=348.8

Q ss_pred             CcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCCCEEEEeccCC
Q 004891          319 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIES  398 (725)
Q Consensus       319 mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVIeavpe~  398 (725)
                      ||++||..+..+|++|++.|.|...++++...+...+.+.+.++.++..+.......+..+.|++.+++||+|||+|.||
T Consensus         1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav~ed   80 (380)
T KOG1683|consen    1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAVFED   80 (380)
T ss_pred             CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccchhhh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCCHHHHHHHHHHHHH
Q 004891          399 VPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKI  478 (725)
Q Consensus       399 ~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~~~~~~l~~~  478 (725)
                      +++|++++.+|++.++++||+.||||++++.++++.+..+++++|+|||+|.+.++++|++.+..|+..++..+.+....
T Consensus        81 l~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~  160 (380)
T KOG1683|consen   81 LELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSP  160 (380)
T ss_pred             HHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHc-CCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHhhCCCC
Q 004891          479 IKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSL-GVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR  557 (725)
Q Consensus       479 lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~-Gv~~~dID~~~~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~  557 (725)
                      .|+.|+++++++||.+||++.+|.+++.+++.+ |++|.++|.+...||||+||+++.|..|+|+..++...+...++++
T Consensus       161 ~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~r  240 (380)
T KOG1683|consen  161 AGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIGPR  240 (380)
T ss_pred             cCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhccch
Confidence            999999999999999999999999999999888 9999999999999999999999999999999888877766665544


Q ss_pred             CCCcHHHHHHHHcCCCccccCceeeeccCCCCCCCCC-CchhHHHHHhhhccCCCCCCCCccccHHHHHHHHHHHHHHHH
Q 004891          558 SFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDP-SVLPIIEECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNES  636 (725)
Q Consensus       558 ~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ea  636 (725)
                           +.++|++.|+.|+|||+|||.|+.+..+..++ +..+.+...   . ..+   ..+..+++|+++|++++.+|||
T Consensus       241 -----~~eel~~~~~~g~kT~kg~y~y~~~l~k~~~~~~~~~~~r~l---~-~~~---~~r~~~~ed~v~~~~~p~VnEa  308 (380)
T KOG1683|consen  241 -----IEEELLEKGRAGIKTGKGIYPYARGLTKKMKRDEMEALLRRL---S-LTP---NPRVADDEDFVEFLLSPFVNEA  308 (380)
T ss_pred             -----hHHHHHHHHhhhhhccCcccccccccccCCChhhHHHHHHHh---c-cCC---CcccCCHHHHHHHHhhHHHHHH
Confidence                 78899999999999999999998875554444 223333322   2 111   1235789999999999999999


Q ss_pred             HHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCCCCCC
Q 004891          637 CRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSA  713 (725)
Q Consensus       637 ~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~gf~~  713 (725)
                      ++|++|||..+++++|.+.++|+|||+++||||.|+|.+|+++++++|+.|+.     |+|+.+|++++++|+-||+
T Consensus       309 l~~l~EGi~~~~~~~Di~~v~G~gfp~~~GGp~~~~d~~G~~ki~~~l~~~~~-----f~P~~~l~~~a~~~~~~~~  380 (380)
T KOG1683|consen  309 LRCLLEGLKASPSDGDIASVFGLGFPPFRGGPMRFVDLYGADKIVSRLQKWSS-----FEPCQLLKDHAKSGKKFYN  380 (380)
T ss_pred             HHHHHHHHhcCccccceeeeeccCCCCcCCCceeeeeccChHHHHHHHHHHhc-----CCHHHHHHHHHhhhccccC
Confidence            99999999999999999999999999999999999999999999999999976     9999999999999999985

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=2.9e-54  Score=453.68  Aligned_cols=279  Identities=29%  Similarity=0.443  Sum_probs=264.6

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHH-HHHhhcCcccccCc-cc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK-ANNALKMLKGVLDY-SE  384 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~-~~~~~~~i~~~~~~-~~  384 (725)
                      .++||+|||+|.||++||..++++|++|++||++++.++++.+.+++.++...+.+.++.++ .+...++++.++++ +.
T Consensus         2 ~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a   81 (287)
T PRK08293          2 DIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA   81 (287)
T ss_pred             CccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence            46899999999999999999999999999999999999999998888889888888888776 66677889888888 46


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCC
Q 004891          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT  464 (725)
Q Consensus       385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t  464 (725)
                      +++||+||+|+||+.++|+++++++.+.+++++||++|+|+++++++++.+.+++||+|+|||+|++.++++|+++++.|
T Consensus        82 ~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~~~~t  161 (287)
T PRK08293         82 VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGT  161 (287)
T ss_pred             hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEEEeCCCCC
Confidence            89999999999999999999999999999999999999999999999998889999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCeeEEE-cCCcchhhhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchH
Q 004891          465 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYG  541 (725)
Q Consensus       465 ~~e~~~~~~~l~~~lGk~~v~v-~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv-~~~dID~~~-~~~G~p~Gpf~~~D~~Gld  541 (725)
                      ++++++.+.++++.+|+.|+++ +|.|||++||++.++++||++++++|+ +|+|||.++ .++|+|+|||+++|.+|+|
T Consensus       162 ~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l~~~g~a~~~~iD~a~~~~~g~~~Gp~~~~D~~Gld  241 (287)
T PRK08293        162 DPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVGLD  241 (287)
T ss_pred             CHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcCHHHHHHHhchH
Confidence            9999999999999999999999 599999999999999999999999997 999999999 9999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCCC--CcHHHHHHHHcCCCccccCceeeecc
Q 004891          542 VAAATSKEFDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYE  585 (725)
Q Consensus       542 ~~~~~~~~l~~~~~~~~~--~~~~l~~~v~~g~~G~k~g~Gfy~y~  585 (725)
                      ++.++++.+++.++++++  |++++++|+++|++|+|+|+|||+|+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~  287 (287)
T PRK08293        242 TAYNITSNWAEATDDENAKKAAALLKEYIDKGKLGVATGEGFYNYP  287 (287)
T ss_pred             HHHHHHHHHHHHhCCcccccchHHHHHHHHCCCCcccCCCccccCc
Confidence            999999999999988764  88999999999999999999999994

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=1.5e-53  Score=448.69  Aligned_cols=280  Identities=32%  Similarity=0.514  Sum_probs=267.0

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      ++||+|||+|.||.+||..|+++|++|++||++++.++++.+++...++..++.+.++..+.+....+++.++++ +.++
T Consensus         1 ~~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   80 (288)
T PRK09260          1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA   80 (288)
T ss_pred             CcEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence            478999999999999999999999999999999999999988888888888889999988888888899888888 6789


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCCH
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA  466 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~  466 (725)
                      +||+||+|+|++.++|+.+++++.+.+++++|+++|+|+++++++++.+.++.+++|+||++|++.++++|+++|+.|++
T Consensus        81 ~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~~t~~  160 (288)
T PRK09260         81 DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSD  160 (288)
T ss_pred             CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999998999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004891          467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA  544 (725)
Q Consensus       467 e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv-~~~dID~~~-~~~G~p~Gpf~~~D~~Gld~~~  544 (725)
                      +++++++++++.+|+.|++++|.|||++||++.++++||++|+++|+ +++|||.++ .++|||+|||+++|.+|+|++.
T Consensus       161 ~~~~~~~~~l~~lg~~~v~v~d~~Gf~~nRl~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~p~Gp~~~~D~~Gl~~~~  240 (288)
T PRK09260        161 ETVQVAKEVAEQMGKETVVVNEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRLGLNFPMGPLELGDLVGLDTRL  240 (288)
T ss_pred             HHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhHHHHH
Confidence            99999999999999999999999999999999999999999999997 999999999 8999999999999999999999


Q ss_pred             HHHHHHHhhCCCCCCCcHHHHHHHHcCCCccccCceeeeccCC
Q 004891          545 ATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKG  587 (725)
Q Consensus       545 ~~~~~l~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~  587 (725)
                      ++++.+++.+++++.|++++.+|+++|++|+|+|+|||+|+++
T Consensus       241 ~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~  283 (288)
T PRK09260        241 NNLKYLHETLGEKYRPAPLLEKYVKAGRLGRKTGRGVYDYTNR  283 (288)
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHCCCCccccCCEEEECCCC
Confidence            9999999999887779999999999999999999999999764

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=1.5e-53  Score=447.54  Aligned_cols=278  Identities=36%  Similarity=0.617  Sum_probs=267.3

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      +|+||+|||+|.||.+||..++++|++|++||++++.++++.+++++.++...+.|.++..+......+++.+++++.++
T Consensus         2 ~~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~   81 (282)
T PRK05808          2 GIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLK   81 (282)
T ss_pred             CccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhc
Confidence            47899999999999999999999999999999999999999999999999999999999888888888898888887899


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCCH
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA  466 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~  466 (725)
                      +||+||+|+||+.++|+++++++.++++++++|+|+||+++++.+++.+.++.|++++||++|++.++++|+++++.|++
T Consensus        82 ~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~t~~  161 (282)
T PRK05808         82 DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSD  161 (282)
T ss_pred             cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004891          467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA  544 (725)
Q Consensus       467 e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv-~~~dID~~~-~~~G~p~Gpf~~~D~~Gld~~~  544 (725)
                      ++++.+.++++.+|+.|++++|.|||++||++.+++||+++++++|+ +|+|||.++ .++|||+|||+++|.+|+|++.
T Consensus       162 e~~~~~~~l~~~lGk~pv~~~d~~g~i~~Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g~g~p~Gp~~~~D~~Gl~~~~  241 (282)
T PRK05808        162 ATHEAVEALAKKIGKTPVEVKNAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMKLGCNHPIGPLALADLIGLDTCL  241 (282)
T ss_pred             HHHHHHHHHHHHcCCeeEEecCccChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHH
Confidence            99999999999999999999999999999999999999999999997 999999999 8999999999999999999999


Q ss_pred             HHHHHHHhhCCCCCC-CcHHHHHHHHcCCCccccCceeeec
Q 004891          545 ATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKANGKGLYTY  584 (725)
Q Consensus       545 ~~~~~l~~~~~~~~~-~~~~l~~~v~~g~~G~k~g~Gfy~y  584 (725)
                      ++++.+++.++++.| |++++++|+++|++|+|+|+|||+|
T Consensus       242 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y  282 (282)
T PRK05808        242 AIMEVLYEGFGDSKYRPCPLLRKMVAAGWLGRKTGRGFYDY  282 (282)
T ss_pred             HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCcccCC
Confidence            999999999987555 8899999999999999999999998

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=100.00  E-value=2.2e-53  Score=448.12  Aligned_cols=279  Identities=30%  Similarity=0.544  Sum_probs=264.0

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHH---HHHhhHHcCCCCHHHHHHhhcCcccccCcc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEA---NVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~---~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (725)
                      +++||+|||+|.||.+||..++++|++|++||++++.++++.+++++   .++..++.+.++..+.+....++..+++++
T Consensus         2 ~i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~   81 (291)
T PRK06035          2 DIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE   81 (291)
T ss_pred             CCcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHH
Confidence            47899999999999999999999999999999999999988877765   366778888888888888888888888877


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCC
Q 004891          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTER  463 (725)
Q Consensus       384 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~  463 (725)
                      .+++||+||+|+|++.++|+++++++.+.+++++||+|+||+++++++++.+.+++|++|+|||+|++.++++|+++++.
T Consensus        82 ~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv~~g~~  161 (291)
T PRK06035         82 SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAAL  161 (291)
T ss_pred             HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEEeCCCC
Confidence            88999999999999999999999999999999999999999999999999998999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchH
Q 004891          464 TSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYG  541 (725)
Q Consensus       464 t~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv-~~~dID~~~-~~~G~p~Gpf~~~D~~Gld  541 (725)
                      |++++++.+.++++.+|+.|++++|.|||++||++.++++||++++++|+ +++|||+++ .++|+|+|||+++|.+|+|
T Consensus       162 T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~~~ea~~~~~~g~a~~~~iD~~~~~~~g~~~Gp~~~~D~~Gl~  241 (291)
T PRK06035        162 TSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIGID  241 (291)
T ss_pred             CCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhcCCCccCHHHHHHHhhHH
Confidence            99999999999999999999999999999999999999999999999997 999999999 8999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCCC-CcHHHHHHHHcCCCcccc-----Cceeeecc
Q 004891          542 VAAATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKAN-----GKGLYTYE  585 (725)
Q Consensus       542 ~~~~~~~~l~~~~~~~~~-~~~~l~~~v~~g~~G~k~-----g~Gfy~y~  585 (725)
                      ++.++++.+++.++++.| |++++++|+++|++|+||     |+|||+|.
T Consensus       242 ~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~g~~G~k~~~~~~g~Gfy~y~  291 (291)
T PRK06035        242 TVYHIAEYLYEETGDPQFIPPNSLKQMVLNGYVGDKKVKYGSKGGWFDYY  291 (291)
T ss_pred             HHHHHHHHHHHHcCCCcCCccHHHHHHHHCCCCcCCCCCCCCCceeeecC
Confidence            999999999999988665 889999999999999999     99999993

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=100.00  E-value=3.8e-53  Score=447.42  Aligned_cols=282  Identities=32%  Similarity=0.577  Sum_probs=270.1

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      +++||+|||+|.||.+||..|+++|++|++||++++.++++.+++++.++++++.|.++.++.+..++++.++++++.++
T Consensus         3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   82 (295)
T PLN02545          3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELR   82 (295)
T ss_pred             CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhC
Confidence            57899999999999999999999999999999999999999999999999999999999998888888888888888899


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCCH
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA  466 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~  466 (725)
                      +||+||+||||++++|+.+|+++.+.+++++||+||||+++++++++.+.++.+++++||++|++.++++|+++++.|++
T Consensus        83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~~t~~  162 (295)
T PLN02545         83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSD  162 (295)
T ss_pred             CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999988889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004891          467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA  544 (725)
Q Consensus       467 e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv-~~~dID~~~-~~~G~p~Gpf~~~D~~Gld~~~  544 (725)
                      ++++.+.++++.+|+.++++++.|||++||++.++++|+++++++|+ +++|||.++ .++|||+|||+++|.+|+|++.
T Consensus       163 e~~~~~~~ll~~lG~~~~~~~d~~g~i~nri~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~~~Gp~~~~D~~Gl~~~~  242 (295)
T PLN02545        163 EVFDATKALAERFGKTVVCSQDYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKLGTNHPMGPLHLADFIGLDTCL  242 (295)
T ss_pred             HHHHHHHHHHHHcCCeeEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCCCHHHHHHHhchHHHH
Confidence            99999999999999999999999999999999999999999999997 999999999 8999999999999999999999


Q ss_pred             HHHHHHHhhCCCCCC-CcHHHHHHHHcCCCccccCceeeeccCCC
Q 004891          545 ATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKANGKGLYTYEKGS  588 (725)
Q Consensus       545 ~~~~~l~~~~~~~~~-~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~  588 (725)
                      ++++.+++.++++.| |++++++|+++|++|+|+|+|||+|++++
T Consensus       243 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~  287 (295)
T PLN02545        243 SIMKVLHEGLGDSKYRPCPLLVQYVDAGRLGRKSGRGVYHYDGKK  287 (295)
T ss_pred             HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCcccCCCeeeECCCCC
Confidence            999999999987655 88999999999999999999999997754

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=1.5e-52  Score=442.19  Aligned_cols=282  Identities=32%  Similarity=0.521  Sum_probs=268.0

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccc
Q 004891          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (725)
Q Consensus       306 ~~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l  385 (725)
                      ++++||+|||+|.||.+||..++++|++|++||++++.++++.+++.+.++..++.|.++..+....+.+++.+++++.+
T Consensus         2 ~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   81 (292)
T PRK07530          2 MAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDL   81 (292)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHh
Confidence            35789999999999999999999999999999999999999988898888888889999888888888889988888889


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCC
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS  465 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~  465 (725)
                      ++||+||+|+||+.++|+.+++++.+.++++++|+|+||+++++.+++.+.++++++|+||++|++.++++|++++..|+
T Consensus        82 ~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g~~t~  161 (292)
T PRK07530         82 ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATD  161 (292)
T ss_pred             cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEEeCCCCCC
Confidence            99999999999999999999999999999999999999999999999988889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHH
Q 004891          466 AQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVA  543 (725)
Q Consensus       466 ~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv-~~~dID~~~-~~~G~p~Gpf~~~D~~Gld~~  543 (725)
                      +++++.+.++++.+|+.|++++|.|||++||++.++++|++.++++|+ ++++||.++ .++|||+|||+++|.+|+|++
T Consensus       162 ~~~~~~~~~~~~~~gk~~v~~~d~pg~i~nRl~~~~~~ea~~~~~~g~~~~~~iD~~~~~g~g~~~GP~~~~D~~Gl~~~  241 (292)
T PRK07530        162 EATFEAAKEFVTKLGKTITVAEDFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMKLGANHPMGPLELADFIGLDTC  241 (292)
T ss_pred             HHHHHHHHHHHHHcCCeEEEecCcCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHH
Confidence            999999999999999999999999999999999999999999999998 999999999 899999999999999999999


Q ss_pred             HHHHHHHHhhCCCCCC-CcHHHHHHHHcCCCccccCceeeeccCC
Q 004891          544 AATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKANGKGLYTYEKG  587 (725)
Q Consensus       544 ~~~~~~l~~~~~~~~~-~~~~l~~~v~~g~~G~k~g~Gfy~y~~~  587 (725)
                      .++++.+++.++++.| |++++.+|+++|++|+|+|+|||+|+++
T Consensus       242 ~~~~~~~~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~Gfy~y~~~  286 (292)
T PRK07530        242 LSIMQVLHDGLADSKYRPCPLLVKYVEAGWLGRKTGRGFYDYRGE  286 (292)
T ss_pred             HHHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeeCCCC
Confidence            9999999999887555 8899999999999999999999999654

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=4e-51  Score=431.30  Aligned_cols=268  Identities=28%  Similarity=0.411  Sum_probs=255.1

Q ss_pred             CcHHHHHHHHHCCCcEEEEeCChH-------HHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccC--c-ccccCC
Q 004891          319 MGSGIATAHILNNIYVVLKEVNSE-------YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--Y-SEFKDV  388 (725)
Q Consensus       319 mG~~iA~~l~~~G~~V~~~d~~~e-------~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~--~-~~l~~a  388 (725)
                      ||++||..++.+|++|++||++++       .++++.+++++.+++++++|.+++++.+..+++++++++  . +++++|
T Consensus         1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a   80 (314)
T PRK08269          1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA   80 (314)
T ss_pred             CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence            899999999999999999999995       477889999999999999999999999999999998765  3 668999


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCCHHH
Q 004891          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQV  468 (725)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~  468 (725)
                      |+|||||||+.++|+++|+++.+.+++++||+||||+++++++++.+.+|+|++|+|||+||+.+|+|||++++.|++++
T Consensus        81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t~~e~  160 (314)
T PRK08269         81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAV  160 (314)
T ss_pred             CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCC---ccHHHHHHhhchHHH
Q 004891          469 ILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQLLDLAGYGVA  543 (725)
Q Consensus       469 ~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~G-v~~~dID~~~-~~~G~p---~Gpf~~~D~~Gld~~  543 (725)
                      ++++.++++.+||.|+++++.|||++||++.++++|++.++++| +++++||.++ .++|+|   +|||+++|.+|+|++
T Consensus       161 ~~~~~~ll~~lGk~~v~v~d~~Gfi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~  240 (314)
T PRK08269        161 VDRLAALLERIGKVPVVCGPSPGYIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDIL  240 (314)
T ss_pred             HHHHHHHHHHcCCcEEEecCCCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHH
Confidence            99999999999999999999999999999999999999999997 5999999999 899999   599999999999999


Q ss_pred             HHHHHHHHhhCCC-CCCCcHHHHHHHHcCCCccccCceeeeccC
Q 004891          544 AATSKEFDKAFPD-RSFQSPLVDLLLKSGRNGKANGKGLYTYEK  586 (725)
Q Consensus       544 ~~~~~~l~~~~~~-~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~  586 (725)
                      +++++.+++.+++ ++.|++++++|+++|++|+|||+|||+|++
T Consensus       241 ~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~ksG~GfY~y~~  284 (314)
T PRK08269        241 YYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDYAG  284 (314)
T ss_pred             HHHHHHHHHHhCCCCCCCCHHHHHHHHCCCCcccCCCcceeCCC
Confidence            9999999998888 445899999999999999999999999964

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=4e-51  Score=428.88  Aligned_cols=277  Identities=23%  Similarity=0.318  Sum_probs=248.4

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cc
Q 004891          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (725)
Q Consensus       306 ~~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (725)
                      ++++||+|||+|.||++||..++.+|++|++||++++.++++.+++.+.++.+.+.+. ...   ...++++.++++ +.
T Consensus         5 ~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~-~~~---~~~~~i~~~~~l~~a   80 (321)
T PRK07066          5 TDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGL-APG---ASPARLRFVATIEAC   80 (321)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-Chh---hHHhhceecCCHHHH
Confidence            4688999999999999999999999999999999999999999999988888888773 322   234578888888 56


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCC
Q 004891          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT  464 (725)
Q Consensus       385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t  464 (725)
                      +++||+|||||||++++|+++|+++.+.+++++||+||||+++++++++.+.+|+||+++||||||+.+|+|||++|+.|
T Consensus        81 v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T  160 (321)
T PRK07066         81 VADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERT  160 (321)
T ss_pred             hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCeeEEE-cCCcchhhhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCC---ccHHHHHHhh
Q 004891          465 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLP---IGPFQLLDLA  538 (725)
Q Consensus       465 ~~e~~~~~~~l~~~lGk~~v~v-~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv-~~~dID~~~-~~~G~p---~Gpf~~~D~~  538 (725)
                      ++++++.+.+|++.+||.||++ +|.||||+||++.++++||++++++|+ +++|||+++ .++|+|   +|||+++|++
T Consensus       161 ~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~~~g~g~r~~~~Gpf~~~Dl~  240 (321)
T PRK07066        161 APEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIRFGAGIRWSFMGTFLTYTLA  240 (321)
T ss_pred             CHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHhhhc
Confidence            9999999999999999999999 799999999999999999999999996 999999999 799998   8999999999


Q ss_pred             chHH-HHHHHHHHHhhCCCC---CCCcHHHHHHHH------cCCCccccCceeeeccC
Q 004891          539 GYGV-AAATSKEFDKAFPDR---SFQSPLVDLLLK------SGRNGKANGKGLYTYEK  586 (725)
Q Consensus       539 Gld~-~~~~~~~l~~~~~~~---~~~~~~l~~~v~------~g~~G~k~g~Gfy~y~~  586 (725)
                      |+|. ..+.++++.+.+.+.   ..++++..+|++      ++.+|.++.+++|.|.+
T Consensus       241 Gld~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd  298 (321)
T PRK07066        241 GGDAGMRHFMQQFGPALELPWTKLVAPELTDALIDRVVEGTAEQQGPRSIKALERYRD  298 (321)
T ss_pred             ChHHHHHHHHHHhhhhhhHHHHhcCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            9998 455556665554221   124556777777      68999999999999854

>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=5.5e-50  Score=391.60  Aligned_cols=250  Identities=32%  Similarity=0.522  Sum_probs=224.4

Q ss_pred             EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccch
Q 004891            6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD   84 (725)
Q Consensus         6 i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   84 (725)
                      +.+...+++|+.||||||+ +|+|+..++.+|.+++..+++|+.+.++||||.|+.||+|+||+++......+-..   .
T Consensus        38 ~~~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~---~  114 (290)
T KOG1680|consen   38 IELVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSD---G  114 (290)
T ss_pred             eEEeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhcccccccc---c
Confidence            3333337899999999996 79999999999999999999999999999999999999999999997643222111   1


Q ss_pred             hHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHH
Q 004891           85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML  164 (725)
Q Consensus        85 ~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l  164 (725)
                      .+.+.+ ..+.+.+||+||+|||+|+|||+||++.||+|||+++|+|++|+.++|++|.||||++|+|.||..+|++|++
T Consensus       115 ~~~~~~-~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~l  193 (290)
T KOG1680|consen  115 IFLRVW-DLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMIL  193 (290)
T ss_pred             cccchh-hhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHHH
Confidence            122334 4455799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhH
Q 004891          165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH  244 (725)
Q Consensus       165 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  244 (725)
                      ||++++|+||+++|||++|||.++++.+|.+++++|++.|+..++                                   
T Consensus       194 tg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~~~~v~-----------------------------------  238 (290)
T KOG1680|consen  194 TGRRLGAQEAKKIGLVNKVVPSGDALGEAVKLAEQIAKNSPLVVR-----------------------------------  238 (290)
T ss_pred             hcCcccHHHHHhCCceeEeecchhHHHHHHHHHHHHHhCCHHHHH-----------------------------------
Confidence            999999999999999999999999999999999999999875433                                   


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCC
Q 004891          245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (725)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  295 (725)
                       +.|+.++.+.++++.+++..|...|...+.++|.+|++.+|.+||++++.
T Consensus       239 -~~K~svn~~~e~~l~e~l~~e~~~~~s~~~~~d~~Eg~~~f~~kr~~~~~  288 (290)
T KOG1680|consen  239 -ADKESVNAAYETTLFEGLELERDLFGSTFATEDRLEGMTAFAEKRKPKFS  288 (290)
T ss_pred             -HHHHHHHHHhhccHHHHHHhhhhhhhhhhhhHHHHHHHHHhcccCCcccc
Confidence             56788999999999999999999999999999999999999999998864

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.6e-49  Score=406.35  Aligned_cols=253  Identities=30%  Similarity=0.471  Sum_probs=228.2

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (725)
                      |+++.+.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.....   .
T Consensus         1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~---~   76 (257)
T PRK05862          1 MAYETILVET-RGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSF---M   76 (257)
T ss_pred             CCCceEEEEe-eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccch---h
Confidence            7888899998 7899999999995 799999999999999999999999999999999999999999998764211   1


Q ss_pred             cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (725)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  159 (725)
                      ..+.......+ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus        77 ~~~~~~~~~~~-~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a  155 (257)
T PRK05862         77 DVYKGDYITNW-EKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKA  155 (257)
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHH
Confidence            11112233445 56899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (725)
Q Consensus       160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (725)
                      ++|+++|++++|+||+++||||+|+|++++.+++.++++++++.++..+                               
T Consensus       156 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~-------------------------------  204 (257)
T PRK05862        156 MDLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIASFSLPAV-------------------------------  204 (257)
T ss_pred             HHHHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhCCHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999998876433                               


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                           ..+|++++.....+++++++.|.+.+..++.|+|+++++++|++||+|..
T Consensus       205 -----~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~e~i~af~~kr~p~~  254 (257)
T PRK05862        205 -----MMAKEAVNRAYETTLAEGLLFERRLFHSLFATEDQKEGMAAFVEKRKPVF  254 (257)
T ss_pred             -----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCCC
Confidence                 35678888888889999999999999999999999999999999998764

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.5e-49  Score=406.41  Aligned_cols=254  Identities=40%  Similarity=0.654  Sum_probs=227.1

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccc
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~   80 (725)
                      |+  ++.++. +++|++||||||+.|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++..........
T Consensus         1 ~~--~i~~~~-~~~v~~itl~rp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~   77 (257)
T PRK07658          1 MK--FLSVRV-EDHVAVITLNHPPANALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQAT   77 (257)
T ss_pred             Cc--eEEEEe-eCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHH
Confidence            55  688888 789999999999889999999999999999999999999999999999999999999885432211111


Q ss_pred             ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHH
Q 004891           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (725)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~  160 (725)
                      .+......++ +.|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|+
T Consensus        78 ~~~~~~~~~~-~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~  156 (257)
T PRK07658         78 ELAQLGQVTF-ERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKAL  156 (257)
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHH
Confidence            2223334556 678999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCC
Q 004891          161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  240 (725)
Q Consensus       161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (725)
                      +|+++|++++|+||+++||||+|||++++.+++.++++++++.+|.++                                
T Consensus       157 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~--------------------------------  204 (257)
T PRK07658        157 EMMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKSPATT--------------------------------  204 (257)
T ss_pred             HHHHcCCCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHHHhCCHHHH--------------------------------
Confidence            999999999999999999999999999999999999999999886432                                


Q ss_pred             ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       241 ~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                          ..+|++++.....+++++++.|.+.+..++.|+++++++++|++||+|++
T Consensus       205 ----~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~  254 (257)
T PRK07658        205 ----RAVLELLQTTKSSSYYEGVKREAKIFGEVFTSEDAKEGVQAFLEKRKPSF  254 (257)
T ss_pred             ----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence                35677888877788999999999999999999999999999999988774

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-48  Score=402.90  Aligned_cols=251  Identities=31%  Similarity=0.478  Sum_probs=224.7

Q ss_pred             cEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCcccccc
Q 004891            5 RVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSLMP   83 (725)
Q Consensus         5 ~i~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~   83 (725)
                      .+.++. +++|++||||||+.|++|.+|+.+|.++++.+++|+++|+|||||.| ++||+|+|++++..... .....+.
T Consensus         4 ~v~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~-~~~~~~~   81 (258)
T PRK09076          4 ELDLEI-DGHVAILTLNNPPANTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDK-AVAREMA   81 (258)
T ss_pred             EEEEEE-ECCEEEEEECCCCcCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcCh-hhHHHHH
Confidence            478888 78999999999988999999999999999999999999999999998 68999999998754211 1111122


Q ss_pred             hhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHH
Q 004891           84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM  163 (725)
Q Consensus        84 ~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~  163 (725)
                      .....++ +.|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++|+
T Consensus        82 ~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~  160 (258)
T PRK09076         82 RRFGEAF-EALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMI  160 (258)
T ss_pred             HHHHHHH-HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHH
Confidence            2334556 668999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChh
Q 004891          164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ  243 (725)
Q Consensus       164 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  243 (725)
                      ++|++++|+||+++||||+|||++++.+++.+++++++..++.+++                                  
T Consensus       161 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~----------------------------------  206 (258)
T PRK09076        161 LCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQSPSAVA----------------------------------  206 (258)
T ss_pred             HcCCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHHhCCHHHHH----------------------------------
Confidence            9999999999999999999999999999999999999998875433                                  


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          244 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                        .+|++++.....++++.++.|.+.+..++.++++++++++|++||+|++
T Consensus       207 --~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~  255 (258)
T PRK09076        207 --ACKTLIQAARNGPRAAALALERELFVDLFDTEDQREGVNAFLEKRAPQW  255 (258)
T ss_pred             --HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence              4577787777788999999999999999999999999999999988775

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.7e-48  Score=401.60  Aligned_cols=252  Identities=25%  Similarity=0.410  Sum_probs=224.8

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCc
Q 004891            1 MAAPRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD   78 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~   78 (725)
                      |+..++.++..+++|++|||||| +.|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++..... ..
T Consensus         3 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~-~~   81 (256)
T PRK06143          3 MLNAHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQ-AS   81 (256)
T ss_pred             cccccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcCh-hh
Confidence            67788999975789999999999 47999999999999999999999999999999998 69999999998854221 11


Q ss_pred             ccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHH
Q 004891           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (725)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~  158 (725)
                      ...+......++ +.|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+ |+++++++|++++|..+
T Consensus        82 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~  159 (256)
T PRK06143         82 AEAFISRLRDLC-DAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWAR  159 (256)
T ss_pred             HHHHHHHHHHHH-HHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHH
Confidence            112223344556 6689999999999999999999999999999999999999999999998 88888999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 004891          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (725)
Q Consensus       159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (725)
                      |++|+++|++++|+||+++||||+|||++++.+++.++++++++.|+.+++                             
T Consensus       160 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-----------------------------  210 (256)
T PRK06143        160 TRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGCGPQALR-----------------------------  210 (256)
T ss_pred             HHHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCCHHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999998875433                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhh
Q 004891          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA  291 (725)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~  291 (725)
                             .+|+.++.....+++++++.|.+.+..++.|+|+++++++|++||+
T Consensus       211 -------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~  256 (256)
T PRK06143        211 -------QQKRLLREWEDMPLDVAIDDSVAEFGAAFLTGEPQRHMAAFLNRKR  256 (256)
T ss_pred             -------HHHHHHHHHccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcC
Confidence                   5577888777888999999999999999999999999999999875

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-48  Score=407.21  Aligned_cols=256  Identities=28%  Similarity=0.427  Sum_probs=226.3

Q ss_pred             CC-CCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCC--
Q 004891            1 MA-APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA--   76 (725)
Q Consensus         1 M~-~~~i~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~--   76 (725)
                      |+ ++++.++. +++|++|||||| +.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++......  
T Consensus         2 ~~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~   80 (272)
T PRK06142          2 MTTYESFTVEL-ADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLG   80 (272)
T ss_pred             CCCcceEEEEe-cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhccccc
Confidence            55 57899998 889999999999 57999999999999999999999999999999999999999999988542110  


Q ss_pred             ----Cc----ccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhc
Q 004891           77 ----GD----VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ  148 (725)
Q Consensus        77 ----~~----~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~  148 (725)
                          ..    ...+.....+++ +.|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~  159 (272)
T PRK06142         81 KDGLARPRTDLRREILRLQAAI-NAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQ  159 (272)
T ss_pred             ccccccchHHHHHHHHHHHHHH-HHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHH
Confidence                00    001112234455 568999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCc-chHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHH
Q 004891          149 RLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVL  227 (725)
Q Consensus       149 ~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (725)
                      +|++++|..+|++|+++|++++|+||+++||||+|||+ +++.+++.++++++++.||.+++                  
T Consensus       160 ~l~~~~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~~~a~~------------------  221 (272)
T PRK06142        160 RLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAKSPLAVR------------------  221 (272)
T ss_pred             HHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhCCHHHHH------------------
Confidence            99999999999999999999999999999999999985 88999999999999998875433                  


Q ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          228 KLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       228 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                                        .+|+.++.....+++++++.|...+..++.|+|+++++.+|++||+|+.
T Consensus       222 ------------------~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~~d~~egv~af~~kr~p~~  270 (272)
T PRK06142        222 ------------------GTKEVLDYMRDHRVADGLRYVATWNAAMLPSKDLTEAIAAHMEKRPPEF  270 (272)
T ss_pred             ------------------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCCCCC
Confidence                              5677788777788999999999999999999999999999999998764

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=100.00  E-value=1.8e-48  Score=403.58  Aligned_cols=255  Identities=33%  Similarity=0.545  Sum_probs=229.9

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCc
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD   78 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~   78 (725)
                      |+++.+.++. +++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++..... ..
T Consensus         1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~-~~   78 (260)
T PRK05809          1 MELKNVILEK-EGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNE-EE   78 (260)
T ss_pred             CCcceEEEEE-eCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccCh-HH
Confidence            8999999998 7899999999995 7999999999999999999999999999999999 89999999998854221 11


Q ss_pred             ccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHH
Q 004891           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (725)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~  158 (725)
                      ...+......++ +.|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus        79 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~  157 (260)
T PRK05809         79 GRKFGLLGNKVF-RKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGK  157 (260)
T ss_pred             HHHHHHHHHHHH-HHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence            111222334555 6799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 004891          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (725)
Q Consensus       159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (725)
                      |++|+++|++++|+||+++||||+|+|++++.+++.+++++++..||.++                              
T Consensus       158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~------------------------------  207 (260)
T PRK05809        158 AKELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANAPIAV------------------------------  207 (260)
T ss_pred             HHHHHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHHhCCHHHH------------------------------
Confidence            99999999999999999999999999999999999999999999887533                              


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                            ..+|+.++.....+++++++.|.+.+..++.|+|+++++++|++||+|+.
T Consensus       208 ------~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~  257 (260)
T PRK05809        208 ------KLCKDAINRGMQVDIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKREKNF  257 (260)
T ss_pred             ------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence                  35678888888889999999999999999999999999999999998764

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-48  Score=404.02  Aligned_cols=254  Identities=33%  Similarity=0.541  Sum_probs=225.6

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCC-C
Q 004891            1 MAAPRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGA-G   77 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~-~   77 (725)
                      |+ +.|.++. +++|++|||||| +.|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++...... .
T Consensus         1 m~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~   78 (260)
T PRK05980          1 MT-DTVLIEI-RDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGA   78 (260)
T ss_pred             CC-ceEEEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccc
Confidence            66 3688888 789999999999 47999999999999999999999999999999998 699999999987542111 1


Q ss_pred             --cccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhC
Q 004891           78 --DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG  155 (725)
Q Consensus        78 --~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG  155 (725)
                        ....+.....+++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|
T Consensus        79 ~~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG  157 (260)
T PRK05980         79 DVALRDFVRRGQAMT-ARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAG  157 (260)
T ss_pred             hhhHHHHHHHHHHHH-HHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcC
Confidence              1112222233455 5689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHH
Q 004891          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK  235 (725)
Q Consensus       156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (725)
                      ..+|++|+++|++++|+||+++||||+|||++++.+++.++++++++.+|.++                           
T Consensus       158 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~---------------------------  210 (260)
T PRK05980        158 RKRALELLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRIIRHSPVAV---------------------------  210 (260)
T ss_pred             HHHHHHHHHcCCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhCCHHHH---------------------------
Confidence            99999999999999999999999999999999999999999999999887433                           


Q ss_pred             HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhc
Q 004891          236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS  293 (725)
Q Consensus       236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~  293 (725)
                               ..+|++++.....+++++++.|.+.+..++.|+|+++++++|++||+|.
T Consensus       211 ---------~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~  259 (260)
T PRK05980        211 ---------AAILTAVTRGLNLSIAEGLLIESEQFARMAGSADLREGLAAWIERRRPA  259 (260)
T ss_pred             ---------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCC
Confidence                     2557788888788899999999999999999999999999999999875

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.5e-48  Score=400.24  Aligned_cols=252  Identities=29%  Similarity=0.442  Sum_probs=224.0

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccccc
Q 004891            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (725)
Q Consensus         4 ~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (725)
                      +.|.++. +++|++||||||+ .|++|.+|+++|.++++.++  +++|+|||||.|++||+|+|++++..... ......
T Consensus         2 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~-~~~~~~   77 (255)
T PRK08150          2 SLVSYEL-DGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDA-GEGMHH   77 (255)
T ss_pred             ceEEEEe-eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccc-hhHHHH
Confidence            4578888 7899999999994 79999999999999999997  78999999999999999999999864221 111122


Q ss_pred             chhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHH
Q 004891           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM  162 (725)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l  162 (725)
                      .....+++ +.|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|
T Consensus        78 ~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l  156 (255)
T PRK08150         78 SRRWHRVF-DKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDM  156 (255)
T ss_pred             HHHHHHHH-HHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHH
Confidence            23344556 66899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCCh
Q 004891          163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  242 (725)
Q Consensus       163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (725)
                      +++|++++|+||+++||||+|||++++.+++.++|+++++.++..++                                 
T Consensus       157 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------------------------  203 (255)
T PRK08150        157 MLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQNAPLTNF---------------------------------  203 (255)
T ss_pred             HHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence            99999999999999999999999999999999999999998875332                                 


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCCC
Q 004891          243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (725)
Q Consensus       243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  296 (725)
                         .+|++++.....+++++++.|.+.+..++.|+|+++++.+|++||+|+.++
T Consensus       204 ---~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~~kr~p~~~~  254 (255)
T PRK08150        204 ---AVLNALPRIADMSADDGLFVESLMAAVAQSAPEAKERLRAFLEKKAAKVKP  254 (255)
T ss_pred             ---HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCCC
Confidence               457788877778899999999999999999999999999999999887643

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.9e-48  Score=402.48  Aligned_cols=255  Identities=25%  Similarity=0.378  Sum_probs=226.6

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCC--C
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA--G   77 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~--~   77 (725)
                      |+|+.+.++. +++|++||||||+ .|++|.+|+++|.+++++++ |+++++|||||.|++||+|+|++++......  .
T Consensus         1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   78 (262)
T PRK08140          1 MMYETILLAI-EAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMP   78 (262)
T ss_pred             CCCceEEEEe-ECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccch
Confidence            8888899998 7899999999994 79999999999999999999 9999999999999999999999987532111  1


Q ss_pred             ccc-ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCH
Q 004891           78 DVS-LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL  156 (725)
Q Consensus        78 ~~~-~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~  156 (725)
                      ... .+......++ +.+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus        79 ~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~  157 (262)
T PRK08140         79 DLGESIETFYNPLV-RRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGM  157 (262)
T ss_pred             hhHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCH
Confidence            000 1111223345 66899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHH
Q 004891          157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK  236 (725)
Q Consensus       157 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (725)
                      .++++|+++|++++|+||+++||||+|||++++.+++.++++++++.++..+                            
T Consensus       158 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~----------------------------  209 (262)
T PRK08140        158 ARALGLALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLATQPTRGL----------------------------  209 (262)
T ss_pred             HHHHHHHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999999886433                            


Q ss_pred             hCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                              ..+|+.++.....+++++++.|...+..++.|+++++++++|++||+|.+
T Consensus       210 --------~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~~  259 (262)
T PRK08140        210 --------ALIKQAMNASATNTLDAQLDLERDLQREAGRSADYAEGVSAFLEKRAPRF  259 (262)
T ss_pred             --------HHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence                    25677888777888999999999999999999999999999999998764

>PRK08139 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=4.2e-48  Score=401.05  Aligned_cols=255  Identities=23%  Similarity=0.340  Sum_probs=225.3

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (725)
                      |..+.+.++. +++|++||||||+ .|++|.+|+++|.+++++++.|++||+|||||.|++||+|+|++++.........
T Consensus         8 ~~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   86 (266)
T PRK08139          8 TEAPLLLRED-RDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYF   86 (266)
T ss_pred             ccCCceEEEe-eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHH
Confidence            3456788888 8899999999995 6999999999999999999999999999999999999999999987542211111


Q ss_pred             cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (725)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  159 (725)
                      ..+.....+++ .+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ +++|+|++|..+|
T Consensus        87 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A  164 (266)
T PRK08139         87 RALFARCSRVM-QAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQA  164 (266)
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHH
Confidence            12222234555 568999999999999999999999999999999999999999999999999765 5789999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (725)
Q Consensus       160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (725)
                      ++|+++|++++|+||+++||||+|+|++++.+++.++++++++.|+.+++                              
T Consensus       165 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------  214 (266)
T PRK08139        165 MEMLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVIAAKSPAAVR------------------------------  214 (266)
T ss_pred             HHHHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998875433                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                            .+|+.++.....+++++++.|.+.+..++.++|+++++++|++||++++
T Consensus       215 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~  263 (266)
T PRK08139        215 ------IGKEAFYRQAEMPLADAYAYAGDVMAENMMAEDAEEGIDAFLEKRPPEW  263 (266)
T ss_pred             ------HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence                  5678888888888999999999999999999999999999999988775

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=100.00  E-value=5.8e-48  Score=398.10  Aligned_cols=251  Identities=31%  Similarity=0.461  Sum_probs=225.3

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (725)
                      |+  .|.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.....   .
T Consensus         1 ~~--~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~---~   74 (255)
T PRK09674          1 MS--ELLVSR-QQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDL---A   74 (255)
T ss_pred             Cc--eEEEEe-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccch---h
Confidence            55  478888 7899999999995 799999999999999999999999999999999999999999998754211   1


Q ss_pred             cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (725)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  159 (725)
                      ..+......++ +.+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus        75 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a  153 (255)
T PRK09674         75 ATLNDPRPQLW-QRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLA  153 (255)
T ss_pred             hhHHHHHHHHH-HHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHH
Confidence            11122233455 66899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (725)
Q Consensus       160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (725)
                      ++|+++|++++|+||+++||||+|||++++.+++.++++++++.||.+++                              
T Consensus       154 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~------------------------------  203 (255)
T PRK09674        154 SQMVLTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIARHSPLALR------------------------------  203 (255)
T ss_pred             HHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998875332                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                            .+|+.++.....++++.++.|.+.+..++.++++++++++|++||+|.+
T Consensus       204 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~i~af~~kr~p~~  252 (255)
T PRK09674        204 ------AAKQALRQSQEVDLQAGLAQERQLFTLLAATEDRHEGISAFLEKRTPDF  252 (255)
T ss_pred             ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence                  5677888888888999999999999999999999999999999988764

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.7e-48  Score=399.72  Aligned_cols=255  Identities=25%  Similarity=0.364  Sum_probs=224.7

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCC--
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG--   77 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~--   77 (725)
                      |+|+++.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.......  
T Consensus         1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   79 (262)
T PRK05995          1 MMYETLEIEQ-RGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDD   79 (262)
T ss_pred             CCCceEEEEe-eCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCch
Confidence            8899999998 7899999999995 79999999999999999999999999999999999999999999875421111  


Q ss_pred             cccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHH
Q 004891           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (725)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~  157 (725)
                      +.........+++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++ +|++++|..
T Consensus        80 ~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vg~~  157 (262)
T PRK05995         80 ENRADARRLADML-RAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISP-YVIRAMGER  157 (262)
T ss_pred             hhhhHHHHHHHHH-HHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHH-HHHHHhCHH
Confidence            1111112234555 66899999999999999999999999999999999999999999999999988765 589999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 004891          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (725)
Q Consensus       158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (725)
                      +|++|+++|++++|+||+++||||+|||++++.+++.++++++++.|+.+++                            
T Consensus       158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------  209 (262)
T PRK05995        158 AARRYFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVANSPQAVR----------------------------  209 (262)
T ss_pred             HHHHHHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999998875332                            


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          238 APNMPQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~-l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                              .+|+.++.....++++. ++.|...+..++.|+|+++++++|++||+|..
T Consensus       210 --------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~~kr~p~~  259 (262)
T PRK05995        210 --------AGKRLVRDVAGRPIDAALIADTASRIALIRATEEAREGVAAFLEKRKPAW  259 (262)
T ss_pred             --------HHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence                    45777877777788888 88999999999999999999999999998774

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.2e-48  Score=398.71  Aligned_cols=251  Identities=24%  Similarity=0.344  Sum_probs=220.7

Q ss_pred             EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccch
Q 004891            6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD   84 (725)
Q Consensus         6 i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   84 (725)
                      |.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++....... ...+..
T Consensus         1 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~-~~~~~~   78 (255)
T PRK06563          1 VSRER-RGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAG-GFPFPE   78 (255)
T ss_pred             CeEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccc-hhhhhh
Confidence            35677 7899999999995 79999999999999999999999999999999999999999999885421111 111111


Q ss_pred             hHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHH
Q 004891           85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML  164 (725)
Q Consensus        85 ~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l  164 (725)
                      ...+.+...+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|++
T Consensus        79 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l  158 (255)
T PRK06563         79 GGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLL  158 (255)
T ss_pred             hhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHH
Confidence            12233323478999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhH
Q 004891          165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH  244 (725)
Q Consensus       165 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  244 (725)
                      +|++++|+||+++||||+|||++++.+++.++++++++.++.+++                                   
T Consensus       159 tg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-----------------------------------  203 (255)
T PRK06563        159 TGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIARAAPLGVQ-----------------------------------  203 (255)
T ss_pred             cCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHhcCHHHHH-----------------------------------
Confidence            999999999999999999999999999999999999988875332                                   


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                       .+|+.++.....+++++++.|...+..++.++|+++++++|++||+|..
T Consensus       204 -~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~  252 (255)
T PRK06563        204 -ATLASARAAVREGEAAAAAQLPPELRPLFTSEDAKEGVQAFLERRPARF  252 (255)
T ss_pred             -HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence             4567777777788999999999999999999999999999999998764

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.7e-48  Score=400.64  Aligned_cols=256  Identities=24%  Similarity=0.330  Sum_probs=227.5

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCC-CceEEEEEcCCCCCcCCCCchhhhhccCCC-
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRD-DVKAIVLTGNGGRFSGGFDINVFQKVHGAG-   77 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~-~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~-   77 (725)
                      |.|+.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+ ++|+|||||.|++||+|+|++++....... 
T Consensus         1 ~~~~~v~~~~-~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~   79 (266)
T PRK05981          1 MQFKKVTLDF-DGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESD   79 (266)
T ss_pred             CCcceEEEEe-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhccccccc
Confidence            8999999999 7899999999995 79999999999999999999876 499999999999999999999975422110 


Q ss_pred             ---c-ccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhh
Q 004891           78 ---D-VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL  153 (725)
Q Consensus        78 ---~-~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~  153 (725)
                         . ...+......++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+++
T Consensus        80 ~~~~~~~~~~~~~~~~~-~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~  158 (266)
T PRK05981         80 SGGDAGAALETAYHPFL-RRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRL  158 (266)
T ss_pred             ccchhHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHH
Confidence               0 011122234555 67899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHH
Q 004891          154 VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQ  233 (725)
Q Consensus       154 vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (725)
                      +|+.++++|+++|++++|+||+++||||+|+|++++.+++.++++++++.|+.+++                        
T Consensus       159 vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~------------------------  214 (266)
T PRK05981        159 VGKARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHELANGPTVALG------------------------  214 (266)
T ss_pred             hHHHHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcCCHHHHH------------------------
Confidence            99999999999999999999999999999999999999999999999988764332                        


Q ss_pred             HHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          234 AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       234 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                                  .+|++++.....++.++++.|...+..++.|+|+++++.+|++||+++.
T Consensus       215 ------------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~  263 (266)
T PRK05981        215 ------------LIRKLYWDSPENDFEEQLNLEREAQRIAGKTEDFKEGVGAFLQKRPAQF  263 (266)
T ss_pred             ------------HHHHHHHHhhhcCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence                        4577787777788999999999999999999999999999999998774

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.3e-48  Score=400.35  Aligned_cols=255  Identities=27%  Similarity=0.356  Sum_probs=225.4

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCH-HHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCC-
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAI-PIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-   77 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~-~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~-   77 (725)
                      |+ +.+.++. +++|++||||||+ .|++|. +|+++|.+++++++.|+++|+|||+|.|++||+|+|++++....... 
T Consensus         1 m~-~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~   78 (266)
T PRK09245          1 MT-DFLLVER-DGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFG   78 (266)
T ss_pred             CC-CceEEEE-ECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhcccccc
Confidence            66 4588888 7899999999995 799995 99999999999999999999999999999999999999985421110 


Q ss_pred             -cc----cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhh
Q 004891           78 -DV----SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPR  152 (725)
Q Consensus        78 -~~----~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r  152 (725)
                       ..    ..+......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++
T Consensus        79 ~~~~~~~~~~~~~~~~~~-~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~  157 (266)
T PRK09245         79 GSPADIRQGYRHGIQRIP-LALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPR  157 (266)
T ss_pred             ccchhHHHHHHHHHHHHH-HHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHH
Confidence             00    01111223445 5689999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHH
Q 004891          153 LVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARL  232 (725)
Q Consensus       153 ~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (725)
                      ++|..+|++|+++|++++|+||+++||||+|||++++.+++.++++++++.|+.+++                       
T Consensus       158 ~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~-----------------------  214 (266)
T PRK09245        158 IIGMARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERIAANPPHALR-----------------------  214 (266)
T ss_pred             HhhHHHHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH-----------------------
Confidence            999999999999999999999999999999999999999999999999998875433                       


Q ss_pred             HHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          233 QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       233 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                                   .+|++++.....++++.++.|.+.+..++.|+|+++++++|++||+|.+
T Consensus       215 -------------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~  263 (266)
T PRK09245        215 -------------LTKRLLREGQHASLDTLLELSAAYQALAHHTADHREAVDAFLEKRPPVF  263 (266)
T ss_pred             -------------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHHcCCCCCC
Confidence                         5677888777888999999999999999999999999999999998764

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9e-48  Score=398.07  Aligned_cols=255  Identities=30%  Similarity=0.488  Sum_probs=227.2

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCc
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD   78 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~   78 (725)
                      |+ +++.+++.+++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++..... ..
T Consensus         1 ~~-~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~-~~   78 (260)
T PRK07657          1 ML-QNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNE-EQ   78 (260)
T ss_pred             CC-ceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCCh-hh
Confidence            77 578888646899999999995 7999999999999999999999999999999999 49999999999754211 11


Q ss_pred             ccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHH
Q 004891           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (725)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~  158 (725)
                      ...+......++ +.|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus        79 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~  157 (260)
T PRK07657         79 VRHAVSLIRTTM-EMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGR  157 (260)
T ss_pred             HHHHHHHHHHHH-HHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHH
Confidence            122223334556 6689999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 004891          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (725)
Q Consensus       159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (725)
                      +++|+++|++++|+||+++||||+|||++++++++.+++++++..++.++                              
T Consensus       158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~------------------------------  207 (260)
T PRK07657        158 AKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASNGPIAV------------------------------  207 (260)
T ss_pred             HHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHH------------------------------
Confidence            99999999999999999999999999999999999999999999887533                              


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                            ..+|+.++.....+++++++.|.+.+..++.|+++++++++|+++|+++.
T Consensus       208 ------~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~~r~~~~  257 (260)
T PRK07657        208 ------RQAKEAISNGIQVDLHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKRKPMY  257 (260)
T ss_pred             ------HHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCC
Confidence                  25677888877888999999999999999999999999999999988774

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.4e-48  Score=396.99  Aligned_cols=253  Identities=32%  Similarity=0.472  Sum_probs=224.9

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCC-Ccc
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-GDV   79 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~-~~~   79 (725)
                      |+|+.+.++. +++|++||||||+.|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++...... ...
T Consensus         1 ~~~~~i~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~   79 (257)
T PRK06495          1 MMMSQLKLEV-SDHVAVVTLDNPPVNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDL   79 (257)
T ss_pred             CCcceEEEEe-eCCEEEEEECCCccccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhH
Confidence            7889999998 78999999999988999999999999999999999999999999999999999999987542111 111


Q ss_pred             cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (725)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  159 (725)
                      ..+.....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++   |+++++++++|..+|
T Consensus        80 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a  155 (257)
T PRK06495         80 RAHNRRTRECF-HAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLT  155 (257)
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHH
Confidence            11122234555 66899999999999999999999999999999999999999999999996   456789999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (725)
Q Consensus       160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (725)
                      ++|+++|++++|+||+++||||+|||++++.+++.++++++++.||..++                              
T Consensus       156 ~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~------------------------------  205 (257)
T PRK06495        156 RRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIASKSPLATR------------------------------  205 (257)
T ss_pred             HHHHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998875433                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                            .+|+.++.....+++++++.|...+..++.|+|+++++++|++||+|.+
T Consensus       206 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~af~~kr~p~~  254 (257)
T PRK06495        206 ------LAKDALNTIENMSLRDGYRYEQDITAKLAKTEDAKEAQRAFLEKRPPVF  254 (257)
T ss_pred             ------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhccCCCCC
Confidence                  4567777777888999999999999999999999999999999998874

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.4e-47  Score=396.53  Aligned_cols=251  Identities=32%  Similarity=0.464  Sum_probs=224.9

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccccc
Q 004891            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (725)
Q Consensus         4 ~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (725)
                      +++.++.++++|++||||||+ .|++|.+|+.+|.++++.+++|+++|+|||||.|++||+|+|++++.....   ...+
T Consensus         7 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~---~~~~   83 (261)
T PRK08138          7 DVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGA---IEMY   83 (261)
T ss_pred             CCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccch---hHHH
Confidence            567888756889999999995 799999999999999999999999999999999999999999998764211   1112


Q ss_pred             chhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHH
Q 004891           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM  162 (725)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l  162 (725)
                      ....++++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++|
T Consensus        84 ~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l  162 (261)
T PRK08138         84 LRHTERYW-EAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRM  162 (261)
T ss_pred             HHHHHHHH-HHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHHH
Confidence            22334555 66899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCCh
Q 004891          163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  242 (725)
Q Consensus       163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (725)
                      +++|++++|+||+++||||+|||++++.+++.++++++++.++..                                   
T Consensus       163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a-----------------------------------  207 (261)
T PRK08138        163 ALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREIARMPPLA-----------------------------------  207 (261)
T ss_pred             HHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHHhCCHHH-----------------------------------
Confidence            999999999999999999999999999999999999999877642                                   


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                       +..+|++++.....+++++++.|.+.+..++.|+++++++++|++||++++
T Consensus       208 -~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~af~~kr~~~~  258 (261)
T PRK08138        208 -LAQIKEVVLAGADAPLDAALALERKAFQLLFDSEDQKEGMDAFLEKRKPAY  258 (261)
T ss_pred             -HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence             235677888888888999999999999999999999999999999998764

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.1e-47  Score=397.56  Aligned_cols=256  Identities=20%  Similarity=0.262  Sum_probs=221.4

Q ss_pred             CCCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccc
Q 004891            2 AAPRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (725)
Q Consensus         2 ~~~~i~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~   80 (725)
                      +|+++.++.++++|++|||||| +.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..........
T Consensus         3 ~~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~   82 (265)
T PRK05674          3 DFQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNT   82 (265)
T ss_pred             CcceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchh
Confidence            3899999984478999999999 579999999999999999999999999999999999999999999875421111001


Q ss_pred             c--cchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHH
Q 004891           81 L--MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (725)
Q Consensus        81 ~--~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~  158 (725)
                      .  ......+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++ ++++++|..+
T Consensus        83 ~~~~~~~~~~~~-~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~~~  160 (265)
T PRK05674         83 NLDDARELAELM-YNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGERA  160 (265)
T ss_pred             hhHHHHHHHHHH-HHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCHHH
Confidence            1  112233555 56899999999999999999999999999999999999999999999999987765 5999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 004891          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (725)
Q Consensus       159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (725)
                      |++|++||++++|+||+++||||+|||++++.+++.++++++++.||.+++                             
T Consensus       161 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~-----------------------------  211 (265)
T PRK05674        161 ARRYALTAERFDGRRARELGLLAESYPAAELEAQVEAWIANLLLNSPQALR-----------------------------  211 (265)
T ss_pred             HHHHHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhcCHHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999998875433                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHH-HHHHHHHHhCCHhHHHHHHHHHhhhhhcCC
Q 004891          239 PNMPQHQACLDVIEEGIVHGGYSGVLK-EAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (725)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~-E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  295 (725)
                             .+|+.++.....++++++.. +.+.+..++.|+++++++++|++||+|.+.
T Consensus       212 -------~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~e~~~af~~kr~p~~~  262 (265)
T PRK05674        212 -------ASKDLLREVGDGELSPALRRYCENAIARIRVSAEGQEGLRAFLEKRTPAWQ  262 (265)
T ss_pred             -------HHHHHHHHhhccChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCCCCCC
Confidence                   45777888777888888765 456788899999999999999999987753

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.4e-47  Score=396.92  Aligned_cols=256  Identities=23%  Similarity=0.310  Sum_probs=222.4

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc-
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-   78 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~-   78 (725)
                      |+|+.+.++.++++|++||||||+ .|++|.+|+++|.++++.++.|+++++|||||.|++||+|+|++++........ 
T Consensus         1 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   80 (262)
T PRK07468          1 MMFETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRA   80 (262)
T ss_pred             CCcceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchh
Confidence            678889998844689999999994 899999999999999999999999999999999999999999998753211111 


Q ss_pred             -ccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHH
Q 004891           79 -VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (725)
Q Consensus        79 -~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~  157 (725)
                       ..........++ +.|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++ +++|..
T Consensus        81 ~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~-~~vG~~  158 (262)
T PRK07468         81 TRIEEARRLAMML-KALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVV-ARMGEA  158 (262)
T ss_pred             hHHHHHHHHHHHH-HHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHH-hhccHH
Confidence             111112233455 67999999999999999999999999999999999999999999999999999998855 559999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 004891          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (725)
Q Consensus       158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (725)
                      ++++|+++|++++|+||+++||||+|+|.+++.+++.++++++++.+|.+++                            
T Consensus       159 ~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~----------------------------  210 (262)
T PRK07468        159 NARRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPYLSCAPGAVA----------------------------  210 (262)
T ss_pred             HHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCHHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999998875433                            


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                              .+|++++.......+++++.|...+..++.|+|+++++++|++||++.+
T Consensus       211 --------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~  259 (262)
T PRK07468        211 --------AAKALVRALGAPIDEAVIDATIEALADTWETEEAREGIAAFFDKRAPAW  259 (262)
T ss_pred             --------HHHHHHHhhhccChHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCC
Confidence                    4566777665566788999999999999999999999999999998875

>PLN02600 enoyl-CoA hydratase

Probab=100.00  E-value=9.3e-48  Score=395.32  Aligned_cols=245  Identities=30%  Similarity=0.475  Sum_probs=219.6

Q ss_pred             cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC-CCCCcCCCCchhhhhccCCCcccccchhHHHH
Q 004891           12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL   89 (725)
Q Consensus        12 ~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~   89 (725)
                      +++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||. |++||+|+|++++..... .....+......+
T Consensus         2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~-~~~~~~~~~~~~~   80 (251)
T PLN02600          2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSP-SEVQKFVNSLRST   80 (251)
T ss_pred             CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccCh-HHHHHHHHHHHHH
Confidence            5789999999995 799999999999999999999999999999998 589999999998854211 1111222333445


Q ss_pred             HHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCC
Q 004891           90 VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI  169 (725)
Q Consensus        90 ~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~  169 (725)
                      + ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..++++|+++|+++
T Consensus        81 ~-~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~  159 (251)
T PLN02600         81 F-SSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRI  159 (251)
T ss_pred             H-HHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCcc
Confidence            5 568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 004891          170 TSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLD  249 (725)
Q Consensus       170 ~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  249 (725)
                      +|+||+++||||+|||++++.+++.++|+++++.|+.+++                                    .+|+
T Consensus       160 ~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~p~a~~------------------------------------~~K~  203 (251)
T PLN02600        160 GAREAASMGLVNYCVPAGEAYEKALELAQEINQKGPLAIK------------------------------------MAKK  203 (251)
T ss_pred             CHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHH------------------------------------HHHH
Confidence            9999999999999999999999999999999998875433                                    5677


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          250 VIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       250 ~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                      +++.....+++++++.|.+.+..++.|+|+++++++|++||+|..
T Consensus       204 ~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~  248 (251)
T PLN02600        204 AINEGSEVDMASGLEIEEECYEQVLKTKDRLEGLAAFAEKRKPVY  248 (251)
T ss_pred             HHHHHccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCC
Confidence            888877888999999999999999999999999999999998764

>PLN02888 enoyl-CoA hydratase

Probab=100.00  E-value=2.5e-47  Score=394.75  Aligned_cols=253  Identities=28%  Similarity=0.467  Sum_probs=224.4

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccc
Q 004891            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (725)
Q Consensus         3 ~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (725)
                      .+.+.++..+++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.......    
T Consensus         8 ~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~----   83 (265)
T PLN02888          8 ENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGD----   83 (265)
T ss_pred             CCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccch----
Confidence            4567777546899999999995 79999999999999999999999999999999999999999999875321111    


Q ss_pred             cchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHH
Q 004891           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE  161 (725)
Q Consensus        82 ~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~  161 (725)
                      ......+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++
T Consensus        84 ~~~~~~~~~-~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~  162 (265)
T PLN02888         84 VKDVETDPV-AQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRARE  162 (265)
T ss_pred             hhHHHHHHH-HHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHH
Confidence            111223455 5688999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCC
Q 004891          162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  241 (725)
Q Consensus       162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (725)
                      |+++|++++|+||+++||||+|||++++.+++.++++++++.++.+++                                
T Consensus       163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------------  210 (265)
T PLN02888        163 VSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNNQGMVL--------------------------------  210 (265)
T ss_pred             HHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHH--------------------------------
Confidence            999999999999999999999999999999999999999998875433                                


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh--CCHhHHHHHHHHHhhhhhcCCC
Q 004891          242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELV--MLDTSRGLVHVFFAQRATSKVP  296 (725)
Q Consensus       242 ~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~--~s~~~~~~i~aF~~~r~~~~~~  296 (725)
                          .+|+.++.....+++++++.|.+.+..++  .++++++++++|++||+++|.|
T Consensus       211 ----~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~e~~~af~ekr~~~~~~  263 (265)
T PLN02888        211 ----RYKSVINDGLKLDLGHALQLEKERAHDYYNGMTKEQFQKMQEFIAGRSSKKPS  263 (265)
T ss_pred             ----HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCC
Confidence                56778888778889999999998888886  5999999999999999998866

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.4e-47  Score=396.20  Aligned_cols=252  Identities=31%  Similarity=0.433  Sum_probs=223.1

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCc
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD   78 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~   78 (725)
                      |+++.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++....... 
T Consensus         1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~-   78 (259)
T PRK06494          1 MALPFSTVER-KGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRG-   78 (259)
T ss_pred             CCCceeEEEe-ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcch-
Confidence            8889999998 7899999999996 6999999999999999999999999999999998 6999999999875422111 


Q ss_pred             ccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHH
Q 004891           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (725)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~  158 (725)
                      .  .......+. . +.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus        79 ~--~~~~~~~~~-~-~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~  154 (259)
T PRK06494         79 W--PESGFGGLT-S-RFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKR  154 (259)
T ss_pred             h--hhHHHHHHH-H-HhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHH
Confidence            0  011122222 3 56899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 004891          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (725)
Q Consensus       159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (725)
                      |++|+++|++++|+||+++||||+|||++++.+++.++++++++.|+.+++                             
T Consensus       155 a~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-----------------------------  205 (259)
T PRK06494        155 AMGMILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILACSPLSIR-----------------------------  205 (259)
T ss_pred             HHHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhcCHHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999998875433                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHH--HHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          239 PNMPQHQACLDVIEEGIVHGGYSGVLKE--AKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E--~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                             .+|+.++.....+++++++.|  ...+..++.|+|+++++++|++||++++
T Consensus       206 -------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~~kr~p~~  256 (259)
T PRK06494        206 -------ASKQAVYRGLEVSLEEAITAQRDYPAVEARRASQDYIEGPKAFAEKRPPRW  256 (259)
T ss_pred             -------HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCC
Confidence                   457788877788899999999  5578899999999999999999987764

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.5e-47  Score=399.24  Aligned_cols=256  Identities=27%  Similarity=0.372  Sum_probs=226.6

Q ss_pred             CCCCcEEEEEecC-cEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc
Q 004891            1 MAAPRVTMEVGND-GVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (725)
Q Consensus         1 M~~~~i~~~~~~~-~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~   78 (725)
                      |+|+.+.+++ ++ +|++|||||| +.|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++........
T Consensus         2 ~~~~~i~~~~-~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~   80 (272)
T PRK06210          2 MAYDAVLYEV-ADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDG   80 (272)
T ss_pred             CCcceEEEEE-CCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccc
Confidence            8899999998 67 9999999999 4799999999999999999999999999999999999999999998764221110


Q ss_pred             c-----cccch----hHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhch
Q 004891           79 V-----SLMPD----VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQR  149 (725)
Q Consensus        79 ~-----~~~~~----~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~  149 (725)
                      .     ..+..    ..++.+ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~  159 (272)
T PRK06210         81 RRDTDVRPFVGNRRPDYQTRY-HFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWI  159 (272)
T ss_pred             cccccchhhhhhhhhhHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhh
Confidence            0     01100    123344 5688999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhc-CchhhhhhhccCCCCChHHHHHHHH
Q 004891          150 LPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-RKPWIRSLHRTDKLGSLSEAREVLK  228 (725)
Q Consensus       150 l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~-~~~~~~~~~~~~~~~~~~~~~~~~~  228 (725)
                      |++++|+.++++|+++|++++|+||+++||||+|||++++.+++.++++++++. +|.++                    
T Consensus       160 l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~p~a~--------------------  219 (272)
T PRK06210        160 LPRLVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSPASM--------------------  219 (272)
T ss_pred             hHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCCHHHH--------------------
Confidence            999999999999999999999999999999999999999999999999999985 65432                    


Q ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          229 LARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       229 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                                      ..+|+.++.....+++++++.|...+..++.++++++++++|++||+|.+
T Consensus       220 ----------------~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~  269 (272)
T PRK06210        220 ----------------AVIKRQLYEDAFQTLAEATARANREMHESLQRPDFIEGVASFLEKRPPRF  269 (272)
T ss_pred             ----------------HHHHHHHHhcccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Confidence                            25677888877888999999999999999999999999999999998774

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=100.00  E-value=1.4e-47  Score=395.68  Aligned_cols=250  Identities=26%  Similarity=0.384  Sum_probs=220.9

Q ss_pred             EEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCC-Ccc-ccc
Q 004891            6 VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-GDV-SLM   82 (725)
Q Consensus         6 i~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~-~~~-~~~   82 (725)
                      |.++. +++|++|||||| +.|++|.+|+.+|.+++++++.|+ +|+|||||.|++||+|+|++++...... .+. ..+
T Consensus         1 ~~~e~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   78 (256)
T TIGR02280         1 ILSAL-EAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTI   78 (256)
T ss_pred             CeEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHH
Confidence            35677 789999999999 579999999999999999999998 9999999999999999999998642111 111 111


Q ss_pred             chhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHH
Q 004891           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM  162 (725)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l  162 (725)
                      ......++ +.+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..++++|
T Consensus        79 ~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l  157 (256)
T TIGR02280        79 ETFYNPLV-RRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGL  157 (256)
T ss_pred             HHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHH
Confidence            11122344 66899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCCh
Q 004891          163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  242 (725)
Q Consensus       163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (725)
                      +++|++++|+||+++||||+|+|++++.+++.++++++++.|+..+                                  
T Consensus       158 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~----------------------------------  203 (256)
T TIGR02280       158 AMLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQPTRGL----------------------------------  203 (256)
T ss_pred             HHcCCCCCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCCHHHH----------------------------------
Confidence            9999999999999999999999999999999999999999887533                                  


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                        ..+|+.++.....+++++++.|.+.+..++.|+|+++++++|++||+|.+
T Consensus       204 --~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~  253 (256)
T TIGR02280       204 --ALTKRAIQAAATNSLDTQLDLERDLQRELGRSADYAEGVTAFLDKRNPQF  253 (256)
T ss_pred             --HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHcCCCCCC
Confidence              25677888877888999999999999999999999999999999998875

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.9e-47  Score=395.97  Aligned_cols=255  Identities=24%  Similarity=0.311  Sum_probs=226.9

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccC-C-C
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG-A-G   77 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~-~-~   77 (725)
                      || .++.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||+|.|++||+|+|++++..... . .
T Consensus         1 ~~-~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~   78 (260)
T PRK07511          1 MS-AELLSRR-EGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPS   78 (260)
T ss_pred             CC-CeeEEEe-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccch
Confidence            77 3577888 7899999999995 799999999999999999999999999999999999999999998864211 1 1


Q ss_pred             cccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHH
Q 004891           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (725)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~  157 (725)
                      ....+.....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus        79 ~~~~~~~~~~~~~-~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~  157 (260)
T PRK07511         79 VQAASIDGLHDWI-RAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQ  157 (260)
T ss_pred             hHHHHHHHHHHHH-HHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHH
Confidence            1112223344556 668999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 004891          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (725)
Q Consensus       158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (725)
                      ++++|+++|++++|+||+++||||+|||++++.+++.++++++++.++..+                             
T Consensus       158 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~~~-----------------------------  208 (260)
T PRK07511        158 LATELLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLAAGSPNAL-----------------------------  208 (260)
T ss_pred             HHHHHHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999998876432                             


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                             ..+|+.++.....+++++++.|.+.+..++.|+++++++++|+++|++.+
T Consensus       209 -------~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~~~r~~~~  258 (260)
T PRK07511        209 -------ARIKSLIADAPEATLAAQLEAERDHFVASLHHADALEGIAAFLEKRAPDY  258 (260)
T ss_pred             -------HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhccCCCCC
Confidence                   25677888888888999999999999999999999999999999998764

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.1e-47  Score=396.06  Aligned_cols=253  Identities=25%  Similarity=0.356  Sum_probs=223.1

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccc
Q 004891            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (725)
Q Consensus         3 ~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (725)
                      ++.+.++. +++|++||||||+ +|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++...........
T Consensus         4 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   82 (263)
T PRK07799          4 GPHALVEQ-RGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKD   82 (263)
T ss_pred             CceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhh
Confidence            46788888 7899999999995 799999999999999999999999999999999999999999999864321111110


Q ss_pred             --c-chhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHH
Q 004891           82 --M-PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (725)
Q Consensus        82 --~-~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~  158 (725)
                        + ......++ + +..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus        83 ~~~~~~~~~~~~-~-~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~  160 (263)
T PRK07799         83 GSYDPSRIDALL-K-GRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTV  160 (263)
T ss_pred             hhhhhhHHHHHH-H-HhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHH
Confidence              0 01111222 3 78899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 004891          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (725)
Q Consensus       159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (725)
                      |++|+++|++++|+||+++||||+|||++++.+++.++++++++.|+.+++                             
T Consensus       161 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~a~~-----------------------------  211 (263)
T PRK07799        161 ACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELINANGPLAVQ-----------------------------  211 (263)
T ss_pred             HHHHHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHHHhcChHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999998875332                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                             .+|+.++.....+++++++.|.+.+..++.++++++++++|++||+|++
T Consensus       212 -------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~  260 (263)
T PRK07799        212 -------AILRTIRETEGMHENEAFKIDTKIGIPVFLSEDAKEGPRAFAEKRAPNF  260 (263)
T ss_pred             -------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCC
Confidence                   5677888877888999999999999999999999999999999988764

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=100.00  E-value=2.2e-47  Score=395.15  Aligned_cols=253  Identities=24%  Similarity=0.344  Sum_probs=222.9

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCcc
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDV   79 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~   79 (725)
                      |+. .+.++. +++|++||||||+.|++|.+|+++|.+++++++.|++||+|||||.| ++||+|+|++++.......  
T Consensus         1 ~~~-~i~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~--   76 (261)
T PRK03580          1 MSE-SLHTTR-NGSILEITLDRPKANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPD--   76 (261)
T ss_pred             CCc-eEEEEE-ECCEEEEEECCccccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcch--
Confidence            663 588888 78999999999988999999999999999999999999999999998 7999999999876422111  


Q ss_pred             cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (725)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  159 (725)
                      ..+.......+ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus        77 ~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a  155 (261)
T PRK03580         77 ADFGPGGFAGL-TEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIA  155 (261)
T ss_pred             hhhhhhhhHHH-HHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHH
Confidence            11111122344 56889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (725)
Q Consensus       160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (725)
                      ++++++|++++|+||+++||||+|||++++.+++.++++++++.++..++                              
T Consensus       156 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------  205 (261)
T PRK03580        156 NEMVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLVNSAPLAIA------------------------------  205 (261)
T ss_pred             HHHHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998875433                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHH----HHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAK----VFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~----~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                            .+|+.++.....+++++++.|..    .+..++.|+|+++++++|++||++.+
T Consensus       206 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~ekr~~~~  258 (261)
T PRK03580        206 ------ALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFAEKRDPVW  258 (261)
T ss_pred             ------HHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHhcCCCCCC
Confidence                  45777877777888999988874    78889999999999999999998764

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.2e-47  Score=398.38  Aligned_cols=252  Identities=30%  Similarity=0.426  Sum_probs=224.1

Q ss_pred             cEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCC---Cccc
Q 004891            5 RVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA---GDVS   80 (725)
Q Consensus         5 ~i~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~---~~~~   80 (725)
                      .+.++. +++|++|||||| +.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++......   ....
T Consensus        18 ~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~   96 (277)
T PRK08258         18 HFLWEV-DDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELL   96 (277)
T ss_pred             ceEEEE-ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHH
Confidence            678888 789999999999 57999999999999999999999999999999999999999999987432111   1111


Q ss_pred             ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCC-CchhhchHhhhhCHHHH
Q 004891           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIP-GFGGTQRLPRLVGLSKA  159 (725)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p-~~g~~~~l~r~vG~~~a  159 (725)
                      .+.....+++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|++++|..+|
T Consensus        97 ~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a  175 (277)
T PRK08258         97 AFTRMTGDLV-KAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRA  175 (277)
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHH
Confidence            1222233555 678999999999999999999999999999999999999999999999995 78899999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (725)
Q Consensus       160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (725)
                      ++|+++|++++|+||+++||||+|||++++.+++.+++++++..|+.+++                              
T Consensus       176 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------  225 (277)
T PRK08258        176 SELLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRLAAGPTFAHG------------------------------  225 (277)
T ss_pred             HHHHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998875433                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                            .+|+.++.....+++++++.|.+.+..++.|+|+++++++|++||++++
T Consensus       226 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~  274 (277)
T PRK08258        226 ------MTKTMLHQEWDMGLEEAIEAEAQAQAICMQTEDFRRAYEAFVAKRKPVF  274 (277)
T ss_pred             ------HHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence                  4577888877888999999999999999999999999999999998875

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.8e-47  Score=392.80  Aligned_cols=250  Identities=28%  Similarity=0.410  Sum_probs=221.1

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (725)
                      |+ +.+.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.......  
T Consensus         1 ~~-~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~--   76 (254)
T PRK08252          1 MS-DEVLVER-RGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPS--   76 (254)
T ss_pred             CC-ceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchh--
Confidence            55 4688888 7899999999995 79999999999999999999999999999999999999999999886421111  


Q ss_pred             cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (725)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  159 (725)
                       ........++   ...+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|
T Consensus        77 -~~~~~~~~~~---~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a  152 (254)
T PRK08252         77 -IPGRGFGGLT---ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIA  152 (254)
T ss_pred             -hhHHHHHHHH---HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHH
Confidence             1111111222   247999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (725)
Q Consensus       160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (725)
                      ++|+++|++++|+||+++||||+|||++++.+++.++++++++.|+.+++                              
T Consensus       153 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------  202 (254)
T PRK08252        153 MELALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERIAANGPLAVA------------------------------  202 (254)
T ss_pred             HHHHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998875433                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                            .+|++++.....++++.++.|...+..++.++|+++++.+|++||+|++
T Consensus       203 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~  251 (254)
T PRK08252        203 ------ASKRIVVESGDWSEDEMFARQRELIAPVFTSADAKEGATAFAEKRAPVW  251 (254)
T ss_pred             ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence                  4577787777778999999999999999999999999999999887764

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.3e-47  Score=396.50  Aligned_cols=254  Identities=25%  Similarity=0.412  Sum_probs=225.4

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCc-c
Q 004891            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD-V   79 (725)
Q Consensus         3 ~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~-~   79 (725)
                      .+.|.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++++|||||.| ++||+|+|++++.......+ .
T Consensus        10 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~   88 (269)
T PRK06127         10 TGKLLAEK-TGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAV   88 (269)
T ss_pred             CCceEEEE-ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHH
Confidence            45688888 7899999999995 7999999999999999999999999999999998 79999999998854211111 1


Q ss_pred             cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (725)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  159 (725)
                      ..+......++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus        89 ~~~~~~~~~~~-~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a  167 (269)
T PRK06127         89 AAYEQAVEAAQ-AALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAA  167 (269)
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHH
Confidence            12222333455 66899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (725)
Q Consensus       160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (725)
                      ++|+++|++++|+||+++||||+|||++++.+++.++|++++..++..++                              
T Consensus       168 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------  217 (269)
T PRK06127        168 KDLFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIAGNAPLTLR------------------------------  217 (269)
T ss_pred             HHHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998765332                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                            .+|+.++.....++++.++.|...+..++.|+|+++++++|++||+|.+
T Consensus       218 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~  266 (269)
T PRK06127        218 ------AAKRAIAELLKDEPERDMAACQALVAACFDSEDYREGRAAFMEKRKPVF  266 (269)
T ss_pred             ------HHHHHHHHhccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCC
Confidence                  4677787777788999999999999999999999999999999998774

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-47  Score=392.83  Aligned_cols=247  Identities=26%  Similarity=0.351  Sum_probs=216.8

Q ss_pred             EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchh
Q 004891            6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV   85 (725)
Q Consensus         6 i~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   85 (725)
                      |+++..+++|++||||||+.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++...............
T Consensus         3 ~~~~~~~~~v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~   82 (249)
T PRK07938          3 ITSTTPEPGIAEVTVDYPPVNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRG   82 (249)
T ss_pred             eeecccCCCEEEEEECCCCcccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHH
Confidence            66665578999999999988999999999999999999999999999999999999999999987542111111111122


Q ss_pred             HHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHc
Q 004891           86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL  165 (725)
Q Consensus        86 ~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~  165 (725)
                      ...++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++   |++++|++++|..++++|+++
T Consensus        83 ~~~~~-~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~lt  158 (249)
T PRK07938         83 CFAAF-RAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFT  158 (249)
T ss_pred             HHHHH-HHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHh
Confidence            33455 56899999999999999999999999999999999999999999999986   456789999999999999999


Q ss_pred             CCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhHH
Q 004891          166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ  245 (725)
Q Consensus       166 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  245 (725)
                      |++++|+||+++||||+|||++++++++.+++++++..++..++                                    
T Consensus       159 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------------  202 (249)
T PRK07938        159 AATITAAELHHFGSVEEVVPRDQLDEAALEVARKIAAKDTRVIR------------------------------------  202 (249)
T ss_pred             CCcCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------------
Confidence            99999999999999999999999999999999999998875433                                    


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhh
Q 004891          246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT  292 (725)
Q Consensus       246 ~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~  292 (725)
                      .+|+.++.....++++.++.|...+..++.++|+++++++|++||+|
T Consensus       203 ~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p  249 (249)
T PRK07938        203 AAKEALNGIDPQDVERSYRWEQGFTFELNLAGVSDEHRDAFVEKRKA  249 (249)
T ss_pred             HHHHHHHhhccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCC
Confidence            46778887777888999999999999999999999999999999875

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=100.00  E-value=3.1e-47  Score=396.09  Aligned_cols=250  Identities=23%  Similarity=0.325  Sum_probs=219.0

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCC-Cc--c
Q 004891            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-GD--V   79 (725)
Q Consensus         4 ~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~-~~--~   79 (725)
                      +++.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++...... ..  .
T Consensus         8 ~~i~~~~-~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   86 (275)
T PRK09120          8 DTVKVEV-EDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQ   86 (275)
T ss_pred             ccEEEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHH
Confidence            5588888 7899999999995 7999999999999999999999999999999999999999999987532111 11  1


Q ss_pred             cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (725)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  159 (725)
                      .........++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|
T Consensus        87 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a  165 (275)
T PRK09120         87 ERIRREAYGWW-RRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDA  165 (275)
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHHH
Confidence            11111233445 56899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (725)
Q Consensus       160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (725)
                      ++|+++|++++|+||+++|||++|||++++.+++.+++++|++.||.+++                              
T Consensus       166 ~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~------------------------------  215 (275)
T PRK09120        166 LYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLLEKNPVVLR------------------------------  215 (275)
T ss_pred             HHHHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998875433                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHH--HHHHHhCCH-hHHHHHHHHHhhhh
Q 004891          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAK--VFKELVMLD-TSRGLVHVFFAQRA  291 (725)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~--~~~~~~~s~-~~~~~i~aF~~~r~  291 (725)
                            .+|+.++.....++++.++.|..  .+..++.++ |+++++++|++||.
T Consensus       216 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~d~~eg~~afl~kr~  264 (275)
T PRK09120        216 ------AAKDGFKRVRELTWDQAEDYLYAKLEQANSLDPEGGREEGLKQFLDDKS  264 (275)
T ss_pred             ------HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhccc
Confidence                  56778888878888899888764  455678998 89999999999888

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=100.00  E-value=2.4e-47  Score=397.64  Aligned_cols=246  Identities=25%  Similarity=0.420  Sum_probs=218.1

Q ss_pred             cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCC---Cc-------cc
Q 004891           12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA---GD-------VS   80 (725)
Q Consensus        12 ~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~---~~-------~~   80 (725)
                      +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++......   ..       ..
T Consensus        15 ~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~   94 (275)
T PLN02664         15 NSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLR   94 (275)
T ss_pred             CCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhhHHHHH
Confidence            6899999999995 7999999999999999999999999999999999999999999988542110   00       00


Q ss_pred             ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHH
Q 004891           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (725)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~  160 (725)
                      .+....++++ +.|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|+
T Consensus        95 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~  173 (275)
T PLN02664         95 RKIKFLQDAI-TAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGYGNAM  173 (275)
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCHHHHH
Confidence            1112233455 568999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHcCCcceecCc-chHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891          161 EMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (725)
Q Consensus       161 ~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (725)
                      +|++||++++|+||+++||||+|||+ +++.+.+.++++++++.+|..++                              
T Consensus       174 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~p~a~~------------------------------  223 (275)
T PLN02664        174 ELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKSPLAVT------------------------------  223 (275)
T ss_pred             HHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999985 88999999999999998875433                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                            .+|++++.....+++++++.|...+..++.|+|+++++++|++||+|.+
T Consensus       224 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~  272 (275)
T PLN02664        224 ------GTKAVLLRSRELSVEQGLDYVATWNSAMLVSDDLNEAVSAQIQKRKPVF  272 (275)
T ss_pred             ------HHHHHHHHHhcCCHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCC
Confidence                  4577787777788999999999999999999999999999999998774

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.5e-47  Score=392.70  Aligned_cols=251  Identities=31%  Similarity=0.442  Sum_probs=225.9

Q ss_pred             CcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccccc
Q 004891            4 PRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (725)
Q Consensus         4 ~~i~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (725)
                      +.+.++. +++|++|||||| +.|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.......  ..+
T Consensus         5 ~~i~~~~-~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~--~~~   81 (259)
T PRK06688          5 TDLLVEL-EDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKP--PDE   81 (259)
T ss_pred             CceEEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcch--HHH
Confidence            5688888 789999999999 689999999999999999999999999999999999999999999986532211  122


Q ss_pred             chhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHH
Q 004891           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM  162 (725)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l  162 (725)
                      .....+++ +.|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|..+|++|
T Consensus        82 ~~~~~~~~-~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l  160 (259)
T PRK06688         82 LAPVNRFL-RAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEM  160 (259)
T ss_pred             HHHHHHHH-HHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHHH
Confidence            33445566 66899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCCh
Q 004891          163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  242 (725)
Q Consensus       163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (725)
                      +++|++++|+||+++||||+|+|++++.+++.++++++++.++.++                                  
T Consensus       161 ~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~~~~~~a~----------------------------------  206 (259)
T PRK06688        161 LLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGPASAL----------------------------------  206 (259)
T ss_pred             HHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHH----------------------------------
Confidence            9999999999999999999999999999999999999998876432                                  


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                        ..+|+.++.....++++++..|.+.+..++.++++++++++|+++|+|++
T Consensus       207 --~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~af~~~~~p~~  256 (259)
T PRK06688        207 --RYTKRAINAATLTELEEALAREAAGFGRLLRTPDFREGATAFIEKRKPDF  256 (259)
T ss_pred             --HHHHHHHHhhhhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence              24567788877888999999999999999999999999999999988764

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=100.00  E-value=3.8e-47  Score=392.61  Aligned_cols=253  Identities=25%  Similarity=0.357  Sum_probs=215.1

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCcccc
Q 004891            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSL   81 (725)
Q Consensus         4 ~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~   81 (725)
                      +.+.++.++++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++...........
T Consensus         2 ~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~   81 (259)
T TIGR01929         2 TDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGV   81 (259)
T ss_pred             ceEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhH
Confidence            457777635789999999995 7999999999999999999999999999999999 79999999998743211110000


Q ss_pred             cchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHH
Q 004891           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE  161 (725)
Q Consensus        82 ~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~  161 (725)
                      .......++ +.+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|+.+|++
T Consensus        82 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~  160 (259)
T TIGR01929        82 HRLNVLDVQ-RQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKARE  160 (259)
T ss_pred             HHHHHHHHH-HHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHH
Confidence            001123445 6689999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCC
Q 004891          162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  241 (725)
Q Consensus       162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (725)
                      |+++|++++|+||+++||||+|||++++.+++.++|+++++.|+.+++                                
T Consensus       161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------------  208 (259)
T TIGR01929       161 IWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWCREILQKSPMAIR--------------------------------  208 (259)
T ss_pred             HHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHHHhCCHHHHH--------------------------------
Confidence            999999999999999999999999999999999999999999875443                                


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       242 ~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                          .+|++++..... ....++.|.+.+..++.|+|+++++++|++||+|++
T Consensus       209 ----~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~  256 (259)
T TIGR01929       209 ----MLKAALNADCDG-QAGLQELAGNATMLFYMTEEGQEGRNAFLEKRQPDF  256 (259)
T ss_pred             ----HHHHHHHhhhcc-chHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Confidence                345566554332 345566677889999999999999999999998774

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=100.00  E-value=7.2e-47  Score=389.89  Aligned_cols=252  Identities=27%  Similarity=0.315  Sum_probs=213.5

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCccc
Q 004891            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS   80 (725)
Q Consensus         3 ~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~   80 (725)
                      |++|.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++..... . ..
T Consensus         1 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~-~-~~   77 (256)
T TIGR03210         1 YEDILYEK-RNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYD-G-RG   77 (256)
T ss_pred             CCceEEEe-eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcccc-c-hh
Confidence            46788888 7899999999995 7999999999999999999999999999999998 69999999998843111 1 11


Q ss_pred             ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHH
Q 004891           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (725)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~  160 (725)
                      .+......++ +.|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|..+|+
T Consensus        78 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~  156 (256)
T TIGR03210        78 TIGLPMEELH-SAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAR  156 (256)
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHH
Confidence            1112234455 679999999999999999999999999999999999999999999999998888899999999999999


Q ss_pred             HHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCC
Q 004891          161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  240 (725)
Q Consensus       161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (725)
                      +|+++|++++|+||+++||||+|||++++.+++.++++++++.|+.+++                               
T Consensus       157 ~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~-------------------------------  205 (256)
T TIGR03210       157 EIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKSPTAIA-------------------------------  205 (256)
T ss_pred             HHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhCCHHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999998875433                               


Q ss_pred             ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCC
Q 004891          241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (725)
Q Consensus       241 ~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  295 (725)
                           .+|++++......... ...|...+..++.|+|+++++.+|++||+|.+.
T Consensus       206 -----~~K~~l~~~~~~~~~~-~~~~~~~~~~~~~~~d~~e~~~af~~kr~p~~~  254 (256)
T TIGR03210       206 -----IAKRSFNMDTAHQRGI-AGMGMYALKLYYDTAESREGVKAFQEKRKPEFR  254 (256)
T ss_pred             -----HHHHHHHHhhcccchH-HHHHHHHHHHHccChhHHHHHHHHhccCCCCCC
Confidence                 3455665543322111 113456788899999999999999999987753

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.3e-47  Score=392.08  Aligned_cols=251  Identities=23%  Similarity=0.286  Sum_probs=223.0

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccccc
Q 004891            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (725)
Q Consensus         4 ~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (725)
                      +++.++. +++|++||||||+ .|++|.+|+.+|.++++++ .|+++|+|||||.|++||+|+|++++...........+
T Consensus         6 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   83 (260)
T PRK07659          6 ESVVVKY-EGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGV   83 (260)
T ss_pred             ceEEEEe-eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHH
Confidence            3588888 7899999999995 7999999999999999999 58899999999999999999999998642211112222


Q ss_pred             chhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHH
Q 004891           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM  162 (725)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l  162 (725)
                      .....+++ ..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|
T Consensus        84 ~~~~~~~~-~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l  162 (260)
T PRK07659         84 MNTISEIV-VTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQI  162 (260)
T ss_pred             HHHHHHHH-HHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHH
Confidence            33344555 56899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCCh
Q 004891          163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  242 (725)
Q Consensus       163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (725)
                      +++|++++|+||+++||||+|| ++++.+++.++++++++.|+.++                                  
T Consensus       163 ~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l~~~~~~a~----------------------------------  207 (260)
T PRK07659        163 IWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKISEWLQKPLKAM----------------------------------  207 (260)
T ss_pred             HHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHHHhCCHHHH----------------------------------
Confidence            9999999999999999999999 78899999999999999886433                                  


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                        ..+|++++.....++++.++.|.+.+..++.|+++++++.+|++||+|+.
T Consensus       208 --~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~  257 (260)
T PRK07659        208 --IETKQIYCELNRSQLEQVLQLEKRAQYAMRQTADHKEGIRAFLEKRLPVF  257 (260)
T ss_pred             --HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCC
Confidence              25677788777888999999999999999999999999999999998774

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=100.00  E-value=6.5e-47  Score=391.01  Aligned_cols=253  Identities=21%  Similarity=0.296  Sum_probs=221.6

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC--CCCCcCCCCchhhhhccCCC
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--GGRFSGGFDINVFQKVHGAG   77 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~--g~~F~aG~Dl~~~~~~~~~~   77 (725)
                      |+++.+.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+ +|+|||||.  |++||+|+|++++...... 
T Consensus         1 ~~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~-   77 (261)
T PRK11423          1 MSMQYVNVVT-INKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRD-   77 (261)
T ss_pred             CCccceEEEe-ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhcccc-
Confidence            8999999999 7899999999995 79999999999999999999887 999999986  3799999999987532111 


Q ss_pred             cccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHH
Q 004891           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (725)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~  157 (725)
                       ...+.....+++ +.|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++|..
T Consensus        78 -~~~~~~~~~~l~-~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~  155 (261)
T PRK11423         78 -PLSYDDPLRQIL-RMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFH  155 (261)
T ss_pred             -HHHHHHHHHHHH-HHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHH
Confidence             112223334555 668999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 004891          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (725)
Q Consensus       158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (725)
                      ++++|+++|++++|+||+++||||+|||++++++.+.++++++++.+|..++                            
T Consensus       156 ~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~----------------------------  207 (261)
T PRK11423        156 IVKEMFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIA----------------------------  207 (261)
T ss_pred             HHHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcCHHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999998875433                            


Q ss_pred             CCCChhHHHHHHHHHHhhc-CCH-HHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          238 APNMPQHQACLDVIEEGIV-HGG-YSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~-~~~-~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                              .+|++++.... .+. +..++.|.+.+..++.|+|+++++.+|++||+|++
T Consensus       208 --------~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~eg~~af~~kr~p~~  258 (261)
T PRK11423        208 --------VIKEQLRVLGEAHPMNPDEFERIQGLRRAVYDSEDYQEGMNAFLEKRKPVF  258 (261)
T ss_pred             --------HHHHHHHhhcccCCcchHHHHHHHHHHHHHhCChhHHHHHHHHhccCCCCC
Confidence                    45666665432 233 67888899999999999999999999999998774

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9e-47  Score=389.47  Aligned_cols=251  Identities=23%  Similarity=0.327  Sum_probs=224.0

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccc
Q 004891            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (725)
Q Consensus         3 ~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (725)
                      ++++.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...........
T Consensus         1 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   79 (255)
T PRK07260          1 FEHIIYEV-EDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQS   79 (255)
T ss_pred             CCceEEEE-ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhh
Confidence            35788888 7899999999995 799999999999999999999999999999999999999999999864221111111


Q ss_pred             ---cchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHH
Q 004891           82 ---MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (725)
Q Consensus        82 ---~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~  158 (725)
                         +.....+++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus        80 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~  158 (255)
T PRK07260         80 LVKIAELVNEIS-FAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNR  158 (255)
T ss_pred             HHHHHHHHHHHH-HHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHH
Confidence               122334455 5689999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 004891          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (725)
Q Consensus       159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (725)
                      +++|+++|++++|+||+++||||+++|++++.+.+.++++++++.++.+++                             
T Consensus       159 a~~l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-----------------------------  209 (255)
T PRK07260        159 ATHLAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGSSNSYA-----------------------------  209 (255)
T ss_pred             HHHHHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHHcCCHHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999998875433                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhh
Q 004891          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA  291 (725)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~  291 (725)
                             .+|+.++.....++++.+..|...+..++.|+++++++++|++||+
T Consensus       210 -------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~  255 (255)
T PRK07260        210 -------AIKSLVWESFFKGWEDYAKLELALQESLAFKEDFKEGVRAFSERRR  255 (255)
T ss_pred             -------HHHHHHHHHhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence                   5677888877888999999999999999999999999999999875

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=100.00  E-value=8.8e-47  Score=392.67  Aligned_cols=256  Identities=19%  Similarity=0.254  Sum_probs=224.2

Q ss_pred             CcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC--CCCcCCCCchhhhhccCCCc-cc
Q 004891            4 PRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG--GRFSGGFDINVFQKVHGAGD-VS   80 (725)
Q Consensus         4 ~~i~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g--~~F~aG~Dl~~~~~~~~~~~-~~   80 (725)
                      +.|.++.++++|++||||||+.|++|.+|+++|.++++++++|+++|+|||||.|  ++||+|+|++++........ ..
T Consensus        11 ~~i~~~~~~~~Va~itlnr~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~   90 (278)
T PLN03214         11 PGVRVDRRPGGIAVVWLAKEPVNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYA   90 (278)
T ss_pred             CceEEEEcCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHH
Confidence            4678887458899999999988999999999999999999999999999999987  69999999998753211111 11


Q ss_pred             ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCC-CCCchhhchHhhhhCHHHH
Q 004891           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGV-IPGFGGTQRLPRLVGLSKA  159 (725)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl-~p~~g~~~~l~r~vG~~~a  159 (725)
                      .+......++ ..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+ +|+++++++|++++|..++
T Consensus        91 ~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a  169 (278)
T PLN03214         91 EFWLTQTTFL-VRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVA  169 (278)
T ss_pred             HHHHHHHHHH-HHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCHHHH
Confidence            1111123345 5689999999999999999999999999999999999999999999999 5999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (725)
Q Consensus       160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (725)
                      ++|+++|+.++|+||+++||||+|||.+++.+.+.+++++++..++..++                              
T Consensus       170 ~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------  219 (278)
T PLN03214        170 ESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERALKLPSAARA------------------------------  219 (278)
T ss_pred             HHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHcCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998875332                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCCC
Q 004891          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (725)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  296 (725)
                            .+|+.++.....+++++++.|.+.+..++.|+|+++++++|++|.+.+|.+
T Consensus       220 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~aflek~~~~~~~  270 (278)
T PLN03214        220 ------ATKALLREEFSAAWEAYYEEEAKGGWKMLSEPSIIKALGGVMERLSSGKEK  270 (278)
T ss_pred             ------HHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccc
Confidence                  457777777777889999999999999999999999999999999988755

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=100.00  E-value=1.8e-46  Score=390.39  Aligned_cols=253  Identities=26%  Similarity=0.364  Sum_probs=217.0

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCccc
Q 004891            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS   80 (725)
Q Consensus         3 ~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~   80 (725)
                      ++.+.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....... ..
T Consensus        12 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~-~~   89 (273)
T PRK07396         12 YEDILYKS-ADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVD-DD   89 (273)
T ss_pred             CcceEEEe-cCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccc-hh
Confidence            46788888 7899999999995 7999999999999999999999999999999999 5999999999875321111 00


Q ss_pred             ccch-hHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891           81 LMPD-VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (725)
Q Consensus        81 ~~~~-~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  159 (725)
                      .... ....++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|
T Consensus        90 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a  168 (273)
T PRK07396         90 GVPRLNVLDLQ-RLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKA  168 (273)
T ss_pred             hhhhhHHHHHH-HHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHH
Confidence            0111 122344 56889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (725)
Q Consensus       160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (725)
                      ++|+++|++++|+||+++||||+|||++++.+++.++|+++++.++.+++                              
T Consensus       169 ~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------  218 (273)
T PRK07396        169 REIWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALR------------------------------  218 (273)
T ss_pred             HHHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998875433                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCC
Q 004891          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (725)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  295 (725)
                            .+|+.++.... ..+...+.|.+.+..++.|+|+++++.+|++||+|.+.
T Consensus       219 ------~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~~  267 (273)
T PRK07396        219 ------CLKAALNADCD-GQAGLQELAGNATMLFYMTEEAQEGRNAFNEKRQPDFS  267 (273)
T ss_pred             ------HHHHHHHhhhc-cHHHHHHHHHHHHHHHhcChhHHHHHHHHhCCCCCCCC
Confidence                  34556655433 34555567888889999999999999999999988754

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.8e-46  Score=394.93  Aligned_cols=257  Identities=25%  Similarity=0.347  Sum_probs=219.5

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccC-C--
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG-A--   76 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~-~--   76 (725)
                      |+++.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..... .  
T Consensus         1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   79 (296)
T PRK08260          1 MTYETIRYDV-ADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAP   79 (296)
T ss_pred             CCcceEEEee-eCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhccccccc
Confidence            7788899998 7899999999995 799999999999999999999999999999999999999999998753100 0  


Q ss_pred             ---------Cccc----ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCC
Q 004891           77 ---------GDVS----LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG  143 (725)
Q Consensus        77 ---------~~~~----~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~  143 (725)
                               ....    .+......++ ..|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~  158 (296)
T PRK08260         80 RTPVEADEEDRADPSDDGVRDGGGRVT-LRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPE  158 (296)
T ss_pred             ccccccccccccchhHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCC
Confidence                     0000    1111223445 6689999999999999999999999999999999999999999999999999


Q ss_pred             chhhchHhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhc-CchhhhhhhccCCCCChHH
Q 004891          144 FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-RKPWIRSLHRTDKLGSLSE  222 (725)
Q Consensus       144 ~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~-~~~~~~~~~~~~~~~~~~~  222 (725)
                      +|++++|++++|..+|++|+++|++++|+||+++||||+|||++++.+++.+++++++.. ++.++              
T Consensus       159 ~g~~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~~~a~--------------  224 (296)
T PRK08260        159 AASSWFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIADNTSPVSV--------------  224 (296)
T ss_pred             cchhhhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHHHHHHHHHHHHHHhcCChHHH--------------
Confidence            999999999999999999999999999999999999999999999999999999999985 55432              


Q ss_pred             HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhc--CCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCCC
Q 004891          223 AREVLKLARLQAKKTAPNMPQHQACLDVIEEGIV--HGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (725)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  296 (725)
                                            ..+|++++....  .... ....|...+..++.|+++++++.+|++||+|...+
T Consensus       225 ----------------------~~~K~~l~~~~~~~~~~~-~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~f~~  277 (296)
T PRK08260        225 ----------------------ALTRQMMWRMAGADHPME-AHRVDSRAIYSRGRSGDGKEGVSSFLEKRPAVFPG  277 (296)
T ss_pred             ----------------------HHHHHHHHhcccCCCcHH-HHHHHHHHHHHHccChhHHHHHHHHhcCCCCCCCC
Confidence                                  245666766532  2233 34668888999999999999999999999987654

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-46  Score=388.68  Aligned_cols=250  Identities=26%  Similarity=0.409  Sum_probs=215.3

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCccc
Q 004891            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS   80 (725)
Q Consensus         3 ~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~   80 (725)
                      ++.+.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.| ++||+|+|++++..........
T Consensus         7 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~   85 (262)
T PRK06144          7 TDELLLEV-RGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAV   85 (262)
T ss_pred             CCceEEEe-eCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHH
Confidence            45788888 7899999999995 7999999999999999999999999999999998 6999999999876432111111


Q ss_pred             ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccc-cCCCCCchhhchHhhhhCHHHH
Q 004891           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT-LGVIPGFGGTQRLPRLVGLSKA  159 (725)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~-~Gl~p~~g~~~~l~r~vG~~~a  159 (725)
                      .+......++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||++ +|++|++|++++|++++|..+|
T Consensus        86 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a  164 (262)
T PRK06144         86 AYERRIDRVL-GALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARV  164 (262)
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHH
Confidence            1222334555 5689999999999999999999999999999999999999999997 9999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (725)
Q Consensus       160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (725)
                      ++++++|++++|+||+++||||+|||++++.+++.++++++++.|+.+++                              
T Consensus       165 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a~~------------------------------  214 (262)
T PRK06144        165 KDMLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELLAAHAPLTLR------------------------------  214 (262)
T ss_pred             HHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998875433                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                            .+|+.++......    ++.+.+.+..++.++++++++.+|++||+|.+
T Consensus       215 ------~~K~~l~~~~~~~----l~~~~~~~~~~~~~~~~~e~~~af~~kr~p~~  259 (262)
T PRK06144        215 ------ATKEALRRLRREG----LPDGDDLIRMCYMSEDFREGVEAFLEKRPPKW  259 (262)
T ss_pred             ------HHHHHHHHhhhcC----HHHHHHHHHHHhcChHHHHHHHHHhcCCCCCC
Confidence                  3455665544333    34456788889999999999999999998764

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.7e-46  Score=384.81  Aligned_cols=248  Identities=28%  Similarity=0.335  Sum_probs=216.8

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (725)
                      |+ +++.++. +++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++..... ...
T Consensus         1 ~~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~-~~~   77 (254)
T PRK08259          1 MS-MSVRVER-NGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRG-NRL   77 (254)
T ss_pred             CC-ceEEEEE-ECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccc-hhh
Confidence            66 4588888 7899999999995 799999999999999999999999999999999999999999998754211 111


Q ss_pred             cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (725)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  159 (725)
                      ...  ...... ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus        78 ~~~--~~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a  154 (254)
T PRK08259         78 HPS--GDGPMG-PSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRA  154 (254)
T ss_pred             hhh--hcchhh-hHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHH
Confidence            100  011112 12347999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (725)
Q Consensus       160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (725)
                      ++|+++|++++|+||+++||||+|||.+++.+++.++|+++++.|+.+++                              
T Consensus       155 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------  204 (254)
T PRK08259        155 MDLILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELAAFPQTCLR------------------------------  204 (254)
T ss_pred             HHHHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998875433                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhh
Q 004891          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA  291 (725)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~  291 (725)
                            .+|++++.....+++++++.|...+..++. +|+++++.+|++|++
T Consensus       205 ------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~-~d~~egi~af~~~~~  249 (254)
T PRK08259        205 ------ADRLSALEQWGLPEEAALANEFAHGLAVLA-AEALEGAARFAAGAG  249 (254)
T ss_pred             ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhhc
Confidence                  457778777778899999999998888887 999999999998766

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.9e-46  Score=384.47  Aligned_cols=247  Identities=24%  Similarity=0.403  Sum_probs=216.9

Q ss_pred             CCCCcEEEEEecC---cEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCC
Q 004891            1 MAAPRVTMEVGND---GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA   76 (725)
Q Consensus         1 M~~~~i~~~~~~~---~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~   76 (725)
                      |+ +.|.++. ++   +|++||||||+ .|++|.+|+++|.++++.+++|+++|+|||||.|++||+|+|++++......
T Consensus         1 m~-~~i~~~~-~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~   78 (251)
T PRK06023          1 MT-DHILVER-PGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMG   78 (251)
T ss_pred             CC-ceEEEEe-ecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhcccc
Confidence            66 4688888 44   59999999995 7999999999999999999999999999999999999999999987542111


Q ss_pred             CcccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCH
Q 004891           77 GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL  156 (725)
Q Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~  156 (725)
                      .  ..+.....+++ +.|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|+++++++++|.
T Consensus        79 ~--~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~  155 (251)
T PRK06023         79 G--TSFGSEILDFL-IALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGH  155 (251)
T ss_pred             c--hhhHHHHHHHH-HHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhH
Confidence            1  11222334555 67999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHH
Q 004891          157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK  236 (725)
Q Consensus       157 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (725)
                      .++++|+++|++++|+||+++||||+|||.+++.+++.++++++++.|+.+++                           
T Consensus       156 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~---------------------------  208 (251)
T PRK06023        156 QRAFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAKPPQALQ---------------------------  208 (251)
T ss_pred             HHHHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHH---------------------------
Confidence            99999999999999999999999999999999999999999999998875433                           


Q ss_pred             hCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhh
Q 004891          237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ  289 (725)
Q Consensus       237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~  289 (725)
                               .+|++++... .+++++++.|.+.+..++.|+++++++++|+++
T Consensus       209 ---------~~K~~l~~~~-~~l~~~~~~e~~~~~~~~~~~~~~e~~~af~e~  251 (251)
T PRK06023        209 ---------IARDLMRGPR-EDILARIDEEAKHFAARLKSAEARAAFEAFMRR  251 (251)
T ss_pred             ---------HHHHHHHhch-hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcC
Confidence                     4466666543 468888999999999999999999999999874

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.3e-46  Score=388.79  Aligned_cols=251  Identities=25%  Similarity=0.292  Sum_probs=211.8

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc-cc
Q 004891            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-VS   80 (725)
Q Consensus         3 ~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~-~~   80 (725)
                      |+.|.++.++++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++........ ..
T Consensus        10 ~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   89 (268)
T PRK07327         10 YPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRA   89 (268)
T ss_pred             CCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHH
Confidence            5678888745789999999996 799999999999999999999999999999999999999999998764221111 11


Q ss_pred             ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHH
Q 004891           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (725)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~  160 (725)
                      .+......++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|+
T Consensus        90 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~  168 (268)
T PRK07327         90 RVWREARDLV-YNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAK  168 (268)
T ss_pred             HHHHHHHHHH-HHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHHHH
Confidence            1122233455 568899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCC
Q 004891          161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  240 (725)
Q Consensus       161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (725)
                      +|+++|++++|+||+++||||+|+|++++.+++.++|+++++.|+..++                               
T Consensus       169 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------------  217 (268)
T PRK07327        169 YYLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAGSQTAIR-------------------------------  217 (268)
T ss_pred             HHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCCHHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999998875433                               


Q ss_pred             ChhHHHHHHHHHHhh---cCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          241 MPQHQACLDVIEEGI---VHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       241 ~~a~~~~~~~~~~~~---~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                           .+|++++...   ..+++..+..|.    .++.|+++++++.+|++||+|.+
T Consensus       218 -----~~K~~l~~~~~~~~~~~~~~~~~~~----~~~~~~d~~eg~~af~ekr~p~~  265 (268)
T PRK07327        218 -----WTKYALNNWLRMAGPTFDTSLALEF----MGFSGPDVREGLASLREKRAPDF  265 (268)
T ss_pred             -----HHHHHHHHhhhhhhhhHHHHHHHHH----HHccChhHHHHHHHHHhcCCCCC
Confidence                 3344554331   123445444442    47889999999999999998774

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.7e-46  Score=385.76  Aligned_cols=247  Identities=27%  Similarity=0.311  Sum_probs=219.0

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (725)
                      |+ +.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++....... .
T Consensus         1 m~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~   77 (249)
T PRK05870          1 MM-DPVLLDV-DDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRP-A   77 (249)
T ss_pred             CC-ccEEEEc-cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccc-h
Confidence            55 3578888 7899999999995 79999999999999999999999999999999999999999999986432211 1


Q ss_pred             cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (725)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  159 (725)
                      ........+.+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.++
T Consensus        78 ~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a  156 (249)
T PRK05870         78 EDGLRRIYDGF-LAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVA  156 (249)
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHH
Confidence            11122233445 55889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (725)
Q Consensus       160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (725)
                      ++|+++|++++|+||+++||||+||  +++.+++.++++++++.||.+++                              
T Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a~~la~~~~~a~~------------------------------  204 (249)
T PRK05870        157 RAALLFGMRFDAEAAVRHGLALMVA--DDPVAAALELAAGPAAAPRELVL------------------------------  204 (249)
T ss_pred             HHHHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            9999999999999999999999999  78999999999999999875433                              


Q ss_pred             CChhHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhh
Q 004891          240 NMPQHQACLDVIEEGIV-HGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ  289 (725)
Q Consensus       240 ~~~a~~~~~~~~~~~~~-~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~  289 (725)
                            .+|+.++.... .+++++++.|.+.+..++.|+|+++++++|+++
T Consensus       205 ------~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~~  249 (249)
T PRK05870        205 ------ATKASMRATASLAQHAAAVEFELGPQAASVQSPEFAARLAAAQRR  249 (249)
T ss_pred             ------HHHHHHHhccccCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcC
Confidence                  56778887777 789999999999999999999999999999874

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.5e-46  Score=382.49  Aligned_cols=250  Identities=28%  Similarity=0.410  Sum_probs=223.5

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (725)
                      |+++.+.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.......  
T Consensus         1 ~~~~~v~~~~-~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~--   77 (258)
T PRK06190          1 MTEPILLVET-HDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAY--   77 (258)
T ss_pred             CCCceEEEEe-eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchh--
Confidence            8999999999 8899999999995 79999999999999999999999999999999999999999999986421111  


Q ss_pred             cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (725)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  159 (725)
                      .. .....+++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|
T Consensus        78 ~~-~~~~~~~~-~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  155 (258)
T PRK06190         78 GA-QDALPNPS-PAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRA  155 (258)
T ss_pred             hH-HHHHHHHH-HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHH
Confidence            11 12234555 67999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (725)
Q Consensus       160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (725)
                      ++|+++|++++|+||+++||||+++|++++.+++.++++++++.|+.+++                              
T Consensus       156 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------  205 (258)
T PRK06190        156 RRMSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNNPAAVR------------------------------  205 (258)
T ss_pred             HHHHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998875433                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCC---HhHHHHHHHHHhhhh
Q 004891          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVML---DTSRGLVHVFFAQRA  291 (725)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s---~~~~~~i~aF~~~r~  291 (725)
                            .+|++++.....+++++++.|...+..++.|   +..++....|.++-+
T Consensus       206 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~~~  254 (258)
T PRK06190        206 ------ALKASYDDGAAAQTGDALALEAEAARAHNRSVSPDGIAARREAVMARGR  254 (258)
T ss_pred             ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhh
Confidence                  5678888888889999999999999999999   667777777776544

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.2e-46  Score=389.38  Aligned_cols=254  Identities=25%  Similarity=0.339  Sum_probs=215.5

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc---c
Q 004891            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD---V   79 (725)
Q Consensus         4 ~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~---~   79 (725)
                      +.+.++..+++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++........   .
T Consensus         9 ~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~   88 (276)
T PRK05864          9 SLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRP   88 (276)
T ss_pred             CceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccch
Confidence            457777546789999999995 799999999999999999999999999999999999999999998743211100   0


Q ss_pred             ---cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCC-CchhhchHhhhhC
Q 004891           80 ---SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIP-GFGGTQRLPRLVG  155 (725)
Q Consensus        80 ---~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p-~~g~~~~l~r~vG  155 (725)
                         ........+++ +.|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|++++|
T Consensus        89 ~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG  167 (276)
T PRK05864         89 TYALRSMELLDDVI-LALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIG  167 (276)
T ss_pred             hHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhhC
Confidence               01112233455 568899999999999999999999999999999999999999999999997 7889999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHH
Q 004891          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK  235 (725)
Q Consensus       156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (725)
                      ..+|++|+++|++++|+||+++||||+|+|++++.+++.++|++|+..||.+++                          
T Consensus       168 ~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~--------------------------  221 (276)
T PRK05864        168 SSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGFSRPGIE--------------------------  221 (276)
T ss_pred             HHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHH--------------------------
Confidence            999999999999999999999999999999999999999999999998875432                          


Q ss_pred             HhCCCChhHHHHHHHHHHhhcC-CHHHHHHHHHHHHH-HHhCCHhHHHHHHHHHhhhhhcC
Q 004891          236 KTAPNMPQHQACLDVIEEGIVH-GGYSGVLKEAKVFK-ELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       236 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~l~~E~~~~~-~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                                .+|+.++..... ++++++..|..... .++.|+|+++++++|++||+|..
T Consensus       222 ----------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~d~~e~~~af~~kr~p~~  272 (276)
T PRK05864        222 ----------LTKRTLWSGLDAASLEAHMQAEGLGQLFVRLLTANFEEAVAARAEKRPPVF  272 (276)
T ss_pred             ----------HHHHHHHhhcccCCHHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCC
Confidence                      456677666554 68888887765322 35789999999999999998774

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=100.00  E-value=7.7e-46  Score=380.50  Aligned_cols=244  Identities=26%  Similarity=0.364  Sum_probs=210.3

Q ss_pred             EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchh
Q 004891            6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV   85 (725)
Q Consensus         6 i~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   85 (725)
                      |.+++ +++|++||||||+.|++|.+|+++|.+++++++.|+++|+|||||.|++||+|.|++++...   . .......
T Consensus         3 v~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~---~-~~~~~~~   77 (251)
T TIGR03189         3 VWLER-DGKLLRLRLARPKANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPD---Q-CAAMLAS   77 (251)
T ss_pred             EEEEe-eCCEEEEEeCCCCcCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCch---h-HHHHHHH
Confidence            67777 78999999999988999999999999999999999999999999999999999999986321   1 1111222


Q ss_pred             HHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHc
Q 004891           86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL  165 (725)
Q Consensus        86 ~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~  165 (725)
                      ..+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++++|++++|..+|++|+++
T Consensus        78 ~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~-~~~~~l~~~vg~~~a~~l~lt  155 (251)
T TIGR03189        78 LHKLV-IAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAP-AASCLLPERMGRVAAEDLLYS  155 (251)
T ss_pred             HHHHH-HHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCC-chHHHHHHHhCHHHHHHHHHc
Confidence            33455 6689999999999999999999999999999999999999999999999997 457899999999999999999


Q ss_pred             CCCCCHHHHHHcCCcceecCcchHHHHHHHH-HHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhH
Q 004891          166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLW-ALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH  244 (725)
Q Consensus       166 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~-a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  244 (725)
                      |++++|+||+++||||+|+|+.+  +.+.++ ++++++.||.+++                                   
T Consensus       156 g~~~~a~eA~~~Glv~~v~~~~~--~~a~~~~a~~la~~~p~a~~-----------------------------------  198 (251)
T TIGR03189       156 GRSIDGAEGARIGLANAVAEDPE--NAALAWFDEHPAKLSASSLR-----------------------------------  198 (251)
T ss_pred             CCCCCHHHHHHCCCcceecCcHH--HHHHHHHHHHHHhCCHHHHH-----------------------------------
Confidence            99999999999999999997543  466665 6889988875433                                   


Q ss_pred             HHHHHHHHHhhcCCHHHHH-HHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          245 QACLDVIEEGIVHGGYSGV-LKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~l-~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                       .+|++++.....++++++ ..|...+..++.|+|+++++++|++||++.+
T Consensus       199 -~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~  248 (251)
T TIGR03189       199 -FAVRAARLGMNERVKAKIAEVEALYLEELMATHDAVEGLNAFLEKRPALW  248 (251)
T ss_pred             -HHHHHHHhhhcccHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhcCCCCC
Confidence             456777777777788776 4788889999999999999999999998874

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-45  Score=387.76  Aligned_cols=253  Identities=22%  Similarity=0.213  Sum_probs=215.0

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchh-hhh---c-c
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINV-FQK---V-H   74 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~-~~~---~-~   74 (725)
                      |+++.+.++. +++|++||||||+ .|+||.+|+++|.+++++++.|++||+|||||.|++||+|+|+++ +..   . .
T Consensus         2 ~~~~~v~~~~-~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~   80 (298)
T PRK12478          2 PDFQTLLYTT-AGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMM   80 (298)
T ss_pred             CCceEEEEec-cCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcc
Confidence            7788899988 7899999999994 799999999999999999999999999999999999999999986 321   0 0


Q ss_pred             CCC---ccccc---c-h--hHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCccccc-CCCCCc
Q 004891           75 GAG---DVSLM---P-D--VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL-GVIPGF  144 (725)
Q Consensus        75 ~~~---~~~~~---~-~--~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~-Gl~p~~  144 (725)
                      ...   ....+   . .  .....+ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++ |++|  
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~--  157 (298)
T PRK12478         81 TDGRWDPGKDFAMVTARETGPTQKF-MAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL--  157 (298)
T ss_pred             cccccCchhhhhhhhhhhcchHHHH-HHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc--
Confidence            000   00111   0 0  011244 45889999999999999999999999999999999999999999997 8875  


Q ss_pred             hhhchHhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHH
Q 004891          145 GGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAR  224 (725)
Q Consensus       145 g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~  224 (725)
                      ++++  .+++|..+|++|++||++++|+||+++||||+|||++++.+++.++|++++..|+.+++               
T Consensus       158 ~~~~--~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~---------------  220 (298)
T PRK12478        158 TGMW--LYRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARIPLSQLQ---------------  220 (298)
T ss_pred             hhHH--HHHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH---------------
Confidence            3333  35699999999999999999999999999999999999999999999999998875433               


Q ss_pred             HHHHHHHHHHHHhCCCChhHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhCCHhHH--------HHHHHHHhhhhhcCC
Q 004891          225 EVLKLARLQAKKTAPNMPQHQACLDVIEEGIV-HGGYSGVLKEAKVFKELVMLDTSR--------GLVHVFFAQRATSKV  295 (725)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~l~~E~~~~~~~~~s~~~~--------~~i~aF~~~r~~~~~  295 (725)
                                           .+|++++.... .+++++++.|...+..++.|+|++        +++.+|++||+|...
T Consensus       221 ---------------------~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~ekR~p~f~  279 (298)
T PRK12478        221 ---------------------AQKLIVNQAYENMGLASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAVERRDGPFG  279 (298)
T ss_pred             ---------------------HHHHHHHHHHHhcchhHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcCCccc
Confidence                                 45777777666 469999999999999999999997        599999999998754

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-45  Score=383.04  Aligned_cols=250  Identities=28%  Similarity=0.439  Sum_probs=219.8

Q ss_pred             CcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccccc
Q 004891            4 PRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (725)
Q Consensus         4 ~~i~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (725)
                      +.+.+++ +++|++|||||| +.|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++....... ....
T Consensus         3 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~~~~   80 (262)
T PRK07509          3 DRVSVTI-EDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNA-VKLL   80 (262)
T ss_pred             ceEEEEe-eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchh-hhhH
Confidence            5788998 889999999999 589999999999999999999999999999999999999999999886422111 1111


Q ss_pred             -------chhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhC
Q 004891           83 -------PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG  155 (725)
Q Consensus        83 -------~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG  155 (725)
                             .....+++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus        81 ~~~~~~~~~~~~~~~-~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g  159 (262)
T PRK07509         81 FKRLPGNANLAQRVS-LGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVR  159 (262)
T ss_pred             hhhhHHHHHHHHHHH-HHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhC
Confidence                   11122334 5578999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHH
Q 004891          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK  235 (725)
Q Consensus       156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (725)
                      ..++++|+++|++++|+||+++||||+|++  ++.+++.++++++++.|+..++                          
T Consensus       160 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~--~~~~~a~~~a~~l~~~~~~~~~--------------------------  211 (262)
T PRK07509        160 KDVARELTYTARVFSAEEALELGLVTHVSD--DPLAAALALAREIAQRSPDAIA--------------------------  211 (262)
T ss_pred             HHHHHHHHHcCCCcCHHHHHHcCChhhhhc--hHHHHHHHHHHHHHhCCHHHHH--------------------------
Confidence            999999999999999999999999999994  4688999999999998875333                          


Q ss_pred             HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                                .+|+.++.....++++++..|.+.+..++.++|+++++.+|++||+|..
T Consensus       212 ----------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~  260 (262)
T PRK07509        212 ----------AAKRLINRSWTASVRALLARESVEQIRLLLGKNQKIAVKAQMKKRAPKF  260 (262)
T ss_pred             ----------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence                      4577787777788999999999999999999999999999999988763

>PLN02921 naphthoate synthase

Probab=100.00  E-value=1.7e-45  Score=388.85  Aligned_cols=254  Identities=27%  Similarity=0.309  Sum_probs=214.9

Q ss_pred             CCcEEEEEe-cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCcc
Q 004891            3 APRVTMEVG-NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDV   79 (725)
Q Consensus         3 ~~~i~~~~~-~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~   79 (725)
                      ++.|.++.+ +++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++....... .
T Consensus        64 ~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~-~  142 (327)
T PLN02921         64 FTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVG-P  142 (327)
T ss_pred             CceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccc-h
Confidence            456778774 5899999999995 7999999999999999999999999999999999 7999999999875311110 0


Q ss_pred             cccch-hHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHH
Q 004891           80 SLMPD-VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (725)
Q Consensus        80 ~~~~~-~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~  158 (725)
                      ..... ...+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+
T Consensus       143 ~~~~~~~~~~l~-~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~  221 (327)
T PLN02921        143 DDAGRLNVLDLQ-IQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKK  221 (327)
T ss_pred             hHHHHHHHHHHH-HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence            01111 112344 5688999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 004891          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (725)
Q Consensus       159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (725)
                      |++|+++|++++|+||+++||||+|||++++.+++.+++++|++.++.+++                             
T Consensus       222 A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~al~-----------------------------  272 (327)
T PLN02921        222 AREMWFLARFYTASEALKMGLVNTVVPLDELEGETVKWCREILRNSPTAIR-----------------------------  272 (327)
T ss_pred             HHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHHHHHHHHccCHHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999998875443                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCC
Q 004891          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (725)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  295 (725)
                             .+|++++..... .......|...+..++.|+|+++++.+|++||+|...
T Consensus       273 -------~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr~p~f~  321 (327)
T PLN02921        273 -------VLKSALNAADDG-HAGLQELGGNATLLFYGSEEGNEGRTAYLEGRAPDFS  321 (327)
T ss_pred             -------HHHHHHHHhhcc-hhHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCC
Confidence                   445666655432 3333444557888999999999999999999998753

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=100.00  E-value=1.3e-45  Score=381.58  Aligned_cols=252  Identities=37%  Similarity=0.572  Sum_probs=218.9

Q ss_pred             CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccc
Q 004891            2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (725)
Q Consensus         2 ~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~   80 (725)
                      .+..+.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..........
T Consensus         3 ~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~   81 (257)
T COG1024           3 TYETILVER-EDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAE   81 (257)
T ss_pred             CCCeeEEEe-eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHH
Confidence            456788888 6779999999995 79999999999999999999999999999999999999999999987511111111


Q ss_pred             ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHH
Q 004891           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (725)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~  160 (725)
                      .+......++ +.+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|+
T Consensus        82 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~  160 (257)
T COG1024          82 NLMQPGQDLL-RALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAK  160 (257)
T ss_pred             HHHhHHHHHH-HHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHH
Confidence            2223333456 679999999999999999999999999999999999999999999999999889999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHcCCcceecCc-chHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891          161 EMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (725)
Q Consensus       161 ~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (725)
                      +|++||+.++++||+++|||+++++. +++.+.+.+++++++. +|..                                
T Consensus       161 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~-~~~a--------------------------------  207 (257)
T COG1024         161 ELLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA-PPLA--------------------------------  207 (257)
T ss_pred             HHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHcc-CHHH--------------------------------
Confidence            99999999999999999999999985 7999999999999987 4432                                


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhc
Q 004891          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS  293 (725)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~  293 (725)
                          ...+|+.++.....++++.+..|...+...+.++|++|++++|++ |+|.
T Consensus       208 ----~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~eg~~a~~~-r~p~  256 (257)
T COG1024         208 ----LAATKRLVRAALEADLAEALEAEALAFARLFSSEDFREGVRAFLE-RKPV  256 (257)
T ss_pred             ----HHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcChhHHHHHHHHHc-cCCC
Confidence                224567777776666889999999999999999999999999999 6553

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.8e-45  Score=376.29  Aligned_cols=243  Identities=19%  Similarity=0.252  Sum_probs=214.9

Q ss_pred             EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccch
Q 004891            6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD   84 (725)
Q Consensus         6 i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   84 (725)
                      |.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++....    ...+..
T Consensus         2 i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~----~~~~~~   76 (248)
T PRK06072          2 IKVES-REGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDF----AIDLRE   76 (248)
T ss_pred             eEEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhh----HHHHHH
Confidence            56777 7899999999995 79999999999999999999999999999999999999999999875321    111222


Q ss_pred             hHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHH
Q 004891           85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML  164 (725)
Q Consensus        85 ~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l  164 (725)
                      ....++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|. +++++++
T Consensus        77 ~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~lll  154 (248)
T PRK06072         77 TFYPII-REIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQ-RFYEILV  154 (248)
T ss_pred             HHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhH-HHHHHHH
Confidence            334555 66899999999999999999999999999999999999999999999999999999999999996 8999999


Q ss_pred             cCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhH
Q 004891          165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH  244 (725)
Q Consensus       165 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  244 (725)
                      +|++++|+||+++||||++   +++.+++.++|+++++.|+.+++                                   
T Consensus       155 ~g~~~~a~eA~~~Glv~~~---~~~~~~a~~~a~~la~~~~~a~~-----------------------------------  196 (248)
T PRK06072        155 LGGEFTAEEAERWGLLKIS---EDPLSDAEEMANRISNGPFQSYI-----------------------------------  196 (248)
T ss_pred             hCCccCHHHHHHCCCcccc---chHHHHHHHHHHHHHhCCHHHHH-----------------------------------
Confidence            9999999999999999963   46789999999999998765332                                   


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                       .+|+.++.....++++.++.|.+.+..++.|+|+++++++|++||+|.+
T Consensus       197 -~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~  245 (248)
T PRK06072        197 -AAKRMINLVLYNDLEEFLEYESAIQGYLGKTEDFKEGISSFKEKREPKF  245 (248)
T ss_pred             -HHHHHHHHHhhcCHHHHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCCC
Confidence             4567777777788999999999999999999999999999999998774

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=5.6e-45  Score=375.57  Aligned_cols=250  Identities=18%  Similarity=0.211  Sum_probs=213.8

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (725)
                      |+|+.+.++. +++|++||||||+ .|++|.+|+++|.++++.++  +++|+|||||.|++||+|+|++++.........
T Consensus         1 ~~~~~i~~~~-~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~   77 (255)
T PRK07112          1 MDYQTIRVRQ-QGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRA   77 (255)
T ss_pred             CCCceEEEEe-eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccccchh
Confidence            7899999999 7899999999995 79999999999999999998  369999999999999999999988642211111


Q ss_pred             c-ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHH
Q 004891           80 S-LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (725)
Q Consensus        80 ~-~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~  158 (725)
                      . .......+++ +.|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ +.+|++++|..+
T Consensus        78 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~  155 (255)
T PRK07112         78 DLIDAEPLYDLW-HRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQK  155 (255)
T ss_pred             hhhhHHHHHHHH-HHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHH
Confidence            1 1112233555 668999999999999999999999999999999999999999999999999865 568999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 004891          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (725)
Q Consensus       159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (725)
                      +++|+++|++++|+||+++||||+|||+++.  .+.++++++++.+|.+++                             
T Consensus       156 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~~~a~~l~~~~p~a~~-----------------------------  204 (255)
T PRK07112        156 AHYMTLMTQPVTAQQAFSWGLVDAYGANSDT--LLRKHLLRLRCLNKAAVA-----------------------------  204 (255)
T ss_pred             HHHHHHhCCcccHHHHHHcCCCceecCcHHH--HHHHHHHHHHhCCHHHHH-----------------------------
Confidence            9999999999999999999999999987653  578899999988875433                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                             .+|++++.. ...++++++.|.+.+..++.|+|+++++.+|++||+|..
T Consensus       205 -------~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~  252 (255)
T PRK07112        205 -------RYKSYASTL-DDTVAAARPAALAANIEMFADPENLRKIARYVETGKFPW  252 (255)
T ss_pred             -------HHHHHHHHh-hhhHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCCCC
Confidence                   445566543 446788999999999999999999999999999988764

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.9e-45  Score=373.72  Aligned_cols=238  Identities=25%  Similarity=0.383  Sum_probs=208.9

Q ss_pred             EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccch
Q 004891            6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD   84 (725)
Q Consensus         6 i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   84 (725)
                      +.++. +++|++||||||+ .|++|.+|+.+|.+++++++.+ ++|+|||||.|++||+|+|+++...      ...+..
T Consensus         2 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~------~~~~~~   73 (243)
T PRK07854          2 IGVTR-DGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY------ADDFPD   73 (243)
T ss_pred             ceEEE-eCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh------HHHHHH
Confidence            56777 7899999999995 7999999999999999999865 9999999999999999999985311      111222


Q ss_pred             hHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHH
Q 004891           85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML  164 (725)
Q Consensus        85 ~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l  164 (725)
                      ...+++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|++
T Consensus        74 ~~~~~~-~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l  152 (243)
T PRK07854         74 ALIEML-HAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLL  152 (243)
T ss_pred             HHHHHH-HHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHHH
Confidence            334555 6689999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhH
Q 004891          165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH  244 (725)
Q Consensus       165 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  244 (725)
                      +|++++|+||+++||||+|++   + +++.++++++++.|+.+++                                   
T Consensus       153 tg~~~~a~eA~~~Glv~~v~~---~-~~a~~~a~~l~~~~~~a~~-----------------------------------  193 (243)
T PRK07854        153 GAEKLTAEQALATGMANRIGT---L-ADAQAWAAEIAGLAPLALQ-----------------------------------  193 (243)
T ss_pred             cCCCcCHHHHHHCCCcccccC---H-HHHHHHHHHHHhCCHHHHH-----------------------------------
Confidence            999999999999999999975   3 2789999999998875332                                   


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                       .+|+.++..  .+++++++.|.+.+..++.|+|+++++++|++||+|.+
T Consensus       194 -~~K~~l~~~--~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~  240 (243)
T PRK07854        194 -HAKRVLNDD--GAIEEAWPAHKELFDKAWASQDAIEAQVARIEKRPPKF  240 (243)
T ss_pred             -HHHHHHHcc--CCHHHHHHHHHHHHHHHhcCchHHHHHHHHhCCCCCCC
Confidence             456677654  66899999999999999999999999999999998764

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=100.00  E-value=1.2e-45  Score=379.72  Aligned_cols=244  Identities=35%  Similarity=0.557  Sum_probs=222.7

Q ss_pred             EEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchh
Q 004891            7 TMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV   85 (725)
Q Consensus         7 ~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   85 (725)
                      .++. +++|++|+|||| +.|++|.+++++|.++++.++.|+++|+||++|.+++||+|.|++++... .......+...
T Consensus         1 ~~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~-~~~~~~~~~~~   78 (245)
T PF00378_consen    1 KYEI-EDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNS-DEEEAREFFRR   78 (245)
T ss_dssp             EEEE-ETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHH-HHHHHHHHHHH
T ss_pred             CEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhcc-ccccccccchh
Confidence            3677 799999999999 79999999999999999999999999999999999999999999999775 22223344555


Q ss_pred             HHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHc
Q 004891           86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL  165 (725)
Q Consensus        86 ~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~  165 (725)
                      ...++ ..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++++++
T Consensus        79 ~~~l~-~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~  157 (245)
T PF00378_consen   79 FQELL-SRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLT  157 (245)
T ss_dssp             HHHHH-HHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccc-ccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeecccccccccc
Confidence            66777 67999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhHH
Q 004891          166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ  245 (725)
Q Consensus       166 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  245 (725)
                      |++++|+||+++||||+|+|++++.+.+.+++++++..++.+++                                    
T Consensus       158 g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------------  201 (245)
T PF00378_consen  158 GEPISAEEALELGLVDEVVPDEELDEEALELAKRLAAKPPSALR------------------------------------  201 (245)
T ss_dssp             TCEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSCHHHHH------------------------------------
T ss_pred             cccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHhcCCHHHHH------------------------------------
Confidence            99999999999999999999999999999999999999875433                                    


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhh
Q 004891          246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ  289 (725)
Q Consensus       246 ~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~  289 (725)
                      .+|+.++......++++++.|.+.+..++.++|+++++++|++|
T Consensus       202 ~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~eK  245 (245)
T PF00378_consen  202 ATKKALNRALEQSLEEALEFEQDLFAECFKSEDFQEGIAAFLEK  245 (245)
T ss_dssp             HHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCc
Confidence            56778888888889999999999999999999999999999986

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=9.1e-45  Score=372.69  Aligned_cols=245  Identities=21%  Similarity=0.290  Sum_probs=220.7

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (725)
                      |.++.+.++. +++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.......  
T Consensus         2 ~~~~~~~~~~-~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~--   78 (249)
T PRK07110          2 MMKVVELREV-EEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGK--   78 (249)
T ss_pred             CCCceEEEEe-eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchh--
Confidence            6678888888 7899999999994 79999999999999999999999999999999999999999999876432211  


Q ss_pred             cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (725)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  159 (725)
                      ..+..  ..++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+|
T Consensus        79 ~~~~~--~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a  155 (249)
T PRK07110         79 GTFTE--ANLY-SLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALG  155 (249)
T ss_pred             hhHhh--HHHH-HHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHH
Confidence            11111  3455 66899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (725)
Q Consensus       160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (725)
                      ++|+++|++++++||+++||||+|||++++.+++.++++++++.|+.+++                              
T Consensus       156 ~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------  205 (249)
T PRK07110        156 QEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLAEKPRHSLV------------------------------  205 (249)
T ss_pred             HHHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998875333                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 004891          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF  287 (725)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~  287 (725)
                            .+|+.++.....+++++++.|.+.+..++.|+|++++++...
T Consensus       206 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~~~~  247 (249)
T PRK07110        206 ------LLKDHLVADRRRRLPEVIEQEVAMHEKTFHQPEVKRRIESLY  247 (249)
T ss_pred             ------HHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHhHHHHHHHhc
Confidence                  567888888888999999999999999999999999998754

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=2.8e-44  Score=383.04  Aligned_cols=276  Identities=31%  Similarity=0.525  Sum_probs=246.3

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      +++||+|||+|.||++||..|+++|++|++||++++.++.+.+.+.+.+......+. .    ...+++++.++++ +.+
T Consensus         3 ~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~i~~~~~~~~~~   77 (311)
T PRK06130          3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGI-A----SAGMGRIRMEAGLAAAV   77 (311)
T ss_pred             CccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhccc-H----HHHhhceEEeCCHHHHh
Confidence            478999999999999999999999999999999999988877655443332222211 0    1223456666776 458


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCC
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS  465 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~  465 (725)
                      ++||+||+|||++.+.++.++.++.+.++++++|+|+||+++++++++.+..+.+|+++||++|+..++++|+++++.|+
T Consensus        78 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i~~g~~t~  157 (311)
T PRK06130         78 SGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTS  157 (311)
T ss_pred             ccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCceEEEeCCCCCC
Confidence            99999999999999999999999999999999999999999999999988888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCeeEEEc-CCcchhhhhhhHHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCC---ccHHHHHHhhc
Q 004891          466 AQVILDLMTVGKIIKKVPVVVG-NCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQLLDLAG  539 (725)
Q Consensus       466 ~e~~~~~~~l~~~lGk~~v~v~-d~~Gfi~nRl~~a~~~Ea~~l~~~G-v~~~dID~~~-~~~G~p---~Gpf~~~D~~G  539 (725)
                      +++++.+.++++.+|+.+++++ +.|||++||++.++++|++.++++| +++++||.++ .++|||   +|||+++|.+|
T Consensus       158 ~~~~~~v~~l~~~~G~~~v~~~~d~~G~i~nr~~~~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~~~~~~Gp~~~~D~~G  237 (311)
T PRK06130        158 PQTVATTMALLRSIGKRPVLVKKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMNG  237 (311)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCccCCCHHHHhhhhc
Confidence            9999999999999999999995 8899999999999999999999997 5999999999 899999   69999999999


Q ss_pred             hHHHHHHHHHHHhhCCCCCCCcHHHHHHHHcCCCccccCceeeeccCC
Q 004891          540 YGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKG  587 (725)
Q Consensus       540 ld~~~~~~~~l~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~  587 (725)
                      +|++.++++.+++.+++++.|++++++|+++|++|+|+|+|||+|+++
T Consensus       238 l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~~~g~gfy~y~~~  285 (311)
T PRK06130        238 LDVHLAVASYLYQDLENRTTPSPLLEEKVEAGELGAKSGQGFYAWPPE  285 (311)
T ss_pred             cchHHHHHHHHHHhcCCcCCCCHHHHHHHHcCCccccCCCcCccCCCC
Confidence            999999999999999887779999999999999999999999999754

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7e-45  Score=376.49  Aligned_cols=249  Identities=25%  Similarity=0.351  Sum_probs=218.0

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhcc-CCCc-cc
Q 004891            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVH-GAGD-VS   80 (725)
Q Consensus         4 ~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~-~~~~-~~   80 (725)
                      +.+.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.... ...+ ..
T Consensus         6 ~~i~~~~-~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   84 (260)
T PRK07827          6 TLVRYAV-DGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAV   84 (260)
T ss_pred             cceEEEe-eCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHH
Confidence            4577887 7899999999995 79999999999999999999999999999999999999999999875421 1111 11


Q ss_pred             ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHH
Q 004891           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (725)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~  160 (725)
                      .+.....+++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++ ..+++
T Consensus        85 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~-~~~a~  162 (260)
T PRK07827         85 ARAREMTALL-RAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLS-PRAAA  162 (260)
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhh-HHHHH
Confidence            1222334555 668999999999999999999999999999999999999999999999999999999999875 56899


Q ss_pred             HHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCC
Q 004891          161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  240 (725)
Q Consensus       161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (725)
                      +|+++|++++|+||+++||||++++  ++.+++.++++++++.++.++                                
T Consensus       163 ~l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~~~a~~la~~~~~a~--------------------------------  208 (260)
T PRK07827        163 RYYLTGEKFGAAEAARIGLVTAAAD--DVDAAVAALLADLRRGSPQGL--------------------------------  208 (260)
T ss_pred             HHHHhCCccCHHHHHHcCCcccchH--HHHHHHHHHHHHHHhCCHHHH--------------------------------
Confidence            9999999999999999999999974  589999999999999886533                                


Q ss_pred             ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhc
Q 004891          241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS  293 (725)
Q Consensus       241 ~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~  293 (725)
                          ..+|+.++......+++.++.|...+..++.++++++++++|++||+|+
T Consensus       209 ----~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~kr~p~  257 (260)
T PRK07827        209 ----AESKALTTAAVLAGFDRDAEELTEESARLFVSDEAREGMTAFLQKRPPR  257 (260)
T ss_pred             ----HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence                3567788888888899999999999999999999999999999998765

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=100.00  E-value=7.6e-45  Score=388.07  Aligned_cols=286  Identities=23%  Similarity=0.342  Sum_probs=220.6

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCC-cc-
Q 004891            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAG-DV-   79 (725)
Q Consensus         4 ~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~-~~-   79 (725)
                      +.+.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....... .. 
T Consensus         3 ~~v~~~~-~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~   81 (342)
T PRK05617          3 DEVLAEV-EGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLA   81 (342)
T ss_pred             ceEEEEE-ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchh
Confidence            4678888 7899999999995 7999999999999999999999999999999999 8999999999875422111 00 


Q ss_pred             c-ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHH
Q 004891           80 S-LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (725)
Q Consensus        80 ~-~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~  158 (725)
                      . .+.....+++ ..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .+
T Consensus        82 ~~~~~~~~~~~~-~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~~  159 (342)
T PRK05617         82 ADRFFREEYRLN-ALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-AL  159 (342)
T ss_pred             HHHHHHHHHHHH-HHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-HH
Confidence            0 1112223445 6689999999999999999999999999999999999999999999999999999999999977 78


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHH------------HHHHhcC---c--------hhhhhhhccC
Q 004891          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWA------------LDIAARR---K--------PWIRSLHRTD  215 (725)
Q Consensus       159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a------------~~la~~~---~--------~~~~~~~~~~  215 (725)
                      |++|++||++++|+||+++||||+|+|++++.+...+++            ..+.+.+   +        ..+...... 
T Consensus       160 a~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  238 (342)
T PRK05617        160 GTYLALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAG-  238 (342)
T ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCC-
Confidence            999999999999999999999999999998877643322            1111110   0        000100000 


Q ss_pred             CCCChHHHHHHHH-----HHHHHHHHhCC-CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHH-h
Q 004891          216 KLGSLSEAREVLK-----LARLQAKKTAP-NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF-A  288 (725)
Q Consensus       216 ~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~-~  288 (725)
                        .++....+.++     ++....++-.. .-.+...+|++++.+...+++++++.|...+..++.|+|+++++++|+ +
T Consensus       239 --~~~~~~~~~l~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~egv~afl~e  316 (342)
T PRK05617        239 --DTVEDIIAALEADGGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRSPDFVEGVRAVLID  316 (342)
T ss_pred             --CCHHHHHHHHHhccHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCchhhccceEEEc
Confidence              11111111111     12233332222 233677889999998888999999999999999999999999999997 7


Q ss_pred             h-hhhcCC
Q 004891          289 Q-RATSKV  295 (725)
Q Consensus       289 ~-r~~~~~  295 (725)
                      | |+|++.
T Consensus       317 k~r~p~~~  324 (342)
T PRK05617        317 KDRNPKWS  324 (342)
T ss_pred             CCCCCCCC
Confidence            6 666653

>PRK08321 naphthoate synthase; Validated

Probab=100.00  E-value=3.9e-44  Score=377.22  Aligned_cols=252  Identities=24%  Similarity=0.304  Sum_probs=212.2

Q ss_pred             cEEEEEe-cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-------CCCcCCCCchhhhhcc-
Q 004891            5 RVTMEVG-NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-------GRFSGGFDINVFQKVH-   74 (725)
Q Consensus         5 ~i~~~~~-~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-------~~F~aG~Dl~~~~~~~-   74 (725)
                      +|.++.+ +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|       ++||+|+|++++.... 
T Consensus        24 ~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~  103 (302)
T PRK08321         24 DITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGY  103 (302)
T ss_pred             eEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccc
Confidence            4666663 5789999999995 7999999999999999999999999999999998       5999999999763210 


Q ss_pred             ---CCC--cc-c--ccchh-HHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEee-CCceEeCcccccCCCCCc
Q 004891           75 ---GAG--DV-S--LMPDV-SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVIPGF  144 (725)
Q Consensus        75 ---~~~--~~-~--~~~~~-~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~-~~a~~~~pe~~~Gl~p~~  144 (725)
                         ...  .. .  ..... ..++. +.+..+||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~  182 (302)
T PRK08321        104 QYAEGDEADTVDPARAGRLHILEVQ-RLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGG  182 (302)
T ss_pred             cccccccccchhhhHHHHHHHHHHH-HHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCc
Confidence               000  00 0  00011 11233 56889999999999999999999999999999999 699999999999999999


Q ss_pred             hhhchHhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHH
Q 004891          145 GGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAR  224 (725)
Q Consensus       145 g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~  224 (725)
                      +++++|+|++|..+|++|+++|++++|+||+++||||+|||++++.+++.+++++|++.++.+++               
T Consensus       183 ~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------  247 (302)
T PRK08321        183 YGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKSPTAMR---------------  247 (302)
T ss_pred             hHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHhCCHHHHH---------------
Confidence            99999999999999999999999999999999999999999999999999999999998875433               


Q ss_pred             HHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          225 EVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                                           .+|++++..... ..+....|.+.+..++.++++++++.+|++||+|.+
T Consensus       248 ---------------------~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~ekr~p~~  295 (302)
T PRK08321        248 ---------------------MLKYAFNLTDDG-LVGQQLFAGEATRLAYMTDEAQEGRDAFLEKRDPDW  295 (302)
T ss_pred             ---------------------HHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence                                 445666654443 344455688999999999999999999999998875

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=4.7e-44  Score=386.35  Aligned_cols=290  Identities=23%  Similarity=0.264  Sum_probs=218.4

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc-cc
Q 004891            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-VS   80 (725)
Q Consensus         3 ~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~-~~   80 (725)
                      ++.+.++. +++|++||||||+ +|+||.+|+.+|.++++.++.|++||+|||||.|++||+|+|++++........ ..
T Consensus        10 ~~~v~~~~-~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~   88 (379)
T PLN02874         10 EEVVLGEE-KGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCL   88 (379)
T ss_pred             CCceEEEE-ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHH
Confidence            35678887 7899999999995 799999999999999999999999999999999999999999999854221111 11


Q ss_pred             ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHH
Q 004891           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (725)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~  160 (725)
                      ........++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. +++
T Consensus        89 ~~~~~~~~l~-~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~-~a~  166 (379)
T PLN02874         89 EVVYRMYWLC-YHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGH-LGE  166 (379)
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHH-HHH
Confidence            1111112234 56889999999999999999999999999999999999999999999999999999999999985 899


Q ss_pred             HHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhh----------------------ccCCCC
Q 004891          161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLH----------------------RTDKLG  218 (725)
Q Consensus       161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~----------------------~~~~~~  218 (725)
                      +|++||++++|+||+++||||+|||++++.+.+.++. ++...+...+....                      +.-...
T Consensus       167 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~-~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~  245 (379)
T PLN02874        167 YLALTGARLNGKEMVACGLATHFVPSEKLPELEKRLL-NLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKD  245 (379)
T ss_pred             HHHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCC
Confidence            9999999999999999999999999988876322221 00000000000000                      000001


Q ss_pred             ChHHHHHHHH---------HHHHHHHHhCCCCh-hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHhHHHHHHH
Q 004891          219 SLSEAREVLK---------LARLQAKKTAPNMP-QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVM---LDTSRGLVHV  285 (725)
Q Consensus       219 ~~~~~~~~~~---------~~~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~---s~~~~~~i~a  285 (725)
                      ++.+....+.         .+....++-....| +...+|++++.+...+++++++.|......++.   ++|++|++++
T Consensus       246 ~~~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~A  325 (379)
T PLN02874        246 TVEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRA  325 (379)
T ss_pred             CHHHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccce
Confidence            1111111111         12233333333444 567889999999889999999999888888878   9999999999


Q ss_pred             HH-hh-hhhcCCC
Q 004891          286 FF-AQ-RATSKVP  296 (725)
Q Consensus       286 F~-~~-r~~~~~~  296 (725)
                      |+ +| |+|++.+
T Consensus       326 flidK~r~P~w~~  338 (379)
T PLN02874        326 LVIDKDNAPKWNP  338 (379)
T ss_pred             EEEcCCCCCCCCC
Confidence            97 77 7777544

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=3.7e-43  Score=390.59  Aligned_cols=254  Identities=16%  Similarity=0.134  Sum_probs=220.6

Q ss_pred             CCcEEEEEe-cCcEEEEEeCCC-CC-------------CCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcCCCC-CcCCC
Q 004891            3 APRVTMEVG-NDGVAIITLINP-PV-------------NALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGNGGR-FSGGF   65 (725)
Q Consensus         3 ~~~i~~~~~-~~~v~~i~l~~p-~~-------------Nal~~~~~~~l~~~l~~~~-~~~~v~~vVl~g~g~~-F~aG~   65 (725)
                      |.+|.+..+ +++|++|||||| +.             |++|.+|+.+|.+++++++ +|++||+|||||.|+. ||+|+
T Consensus       255 ~~~~~v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~  334 (546)
T TIGR03222       255 YPTVDVAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAA  334 (546)
T ss_pred             eeeEEEEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCc
Confidence            445555443 678999999999 47             9999999999999999998 4599999999999987 99999


Q ss_pred             CchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEE-cccccchh-hHHhhhcCEEEe-------eCCceEeCccc
Q 004891           66 DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV-EGLALGGG-LELAMGCHARIA-------APKTQLGLPEL  136 (725)
Q Consensus        66 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav-~G~a~GgG-~~lalacD~~ia-------~~~a~~~~pe~  136 (725)
                      |++.+... ............++++ ..|.++||||||+| ||+|+||| ++|+++||+|||       +++++|++||+
T Consensus       335 Dl~~~~~~-~~~~~~~~~~~~~~~~-~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~  412 (546)
T TIGR03222       335 DALLEAHK-DHWFVRETIGYLRRTL-ARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSEL  412 (546)
T ss_pred             Cccccccc-cchhHHHHHHHHHHHH-HHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCcc
Confidence            99843211 1101111112233456 66999999999999 89999999 999999999999       89999999999


Q ss_pred             ccCCCCCchhhchHhhhh-CHHHH--HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhc
Q 004891          137 TLGVIPGFGGTQRLPRLV-GLSKA--IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHR  213 (725)
Q Consensus       137 ~~Gl~p~~g~~~~l~r~v-G~~~a--~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~  213 (725)
                      ++|++|++|++++|++++ |..++  ++|+++|++++|+||+++|||++|+|++++++++.++|+++++.||.+++    
T Consensus       413 ~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~----  488 (546)
T TIGR03222       413 NFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALEERASFSPDALT----  488 (546)
T ss_pred             ccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHHHHHhcCHHHHH----
Confidence            999999999999999998 99999  55999999999999999999999999999999999999999999886443    


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHhCCHhHHH---HHHHHHhh
Q 004891          214 TDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRG---LVHVFFAQ  289 (725)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-l~~E~~~~~~~~~s~~~~~---~i~aF~~~  289 (725)
                                                      .+|+.++.....+++.+ +..|.+.+..++.|+|+++   ++++|++|
T Consensus       489 --------------------------------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ek  536 (546)
T TIGR03222       489 --------------------------------GLEANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYGSG  536 (546)
T ss_pred             --------------------------------HHHHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHccC
Confidence                                            56778888889999999 9999999999999999999   99999999


Q ss_pred             hhhcC
Q 004891          290 RATSK  294 (725)
Q Consensus       290 r~~~~  294 (725)
                      |+|..
T Consensus       537 r~p~f  541 (546)
T TIGR03222       537 KKAQF  541 (546)
T ss_pred             CCCCC
Confidence            99874

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=3.1e-43  Score=392.88  Aligned_cols=254  Identities=15%  Similarity=0.157  Sum_probs=220.9

Q ss_pred             CCcEEEEEe-cCcEEEEEeCCCC-C-------------CCCCHHHHHHHHHHHHHHhc-CCCceEEEEEcCCC-CCcCCC
Q 004891            3 APRVTMEVG-NDGVAIITLINPP-V-------------NALAIPIVAGLKDKFEEATS-RDDVKAIVLTGNGG-RFSGGF   65 (725)
Q Consensus         3 ~~~i~~~~~-~~~v~~i~l~~p~-~-------------Nal~~~~~~~l~~~l~~~~~-~~~v~~vVl~g~g~-~F~aG~   65 (725)
                      |.++.++.+ +++|++||||||+ .             |++|.+|+.+|.+++++++. |+++|+|||||.|+ +||+|+
T Consensus       259 ~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~  338 (550)
T PRK08184        259 YRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAA  338 (550)
T ss_pred             eEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCC
Confidence            455666653 5789999999994 5             79999999999999999986 79999999999994 999999


Q ss_pred             CchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEEc-ccccchh-hHHhhhcCEEEee-------CCceEeCccc
Q 004891           66 DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE-GLALGGG-LELAMGCHARIAA-------PKTQLGLPEL  136 (725)
Q Consensus        66 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~-G~a~GgG-~~lalacD~~ia~-------~~a~~~~pe~  136 (725)
                      |++.+.. .............+.++ ++|.++||||||+|| |+|+||| ++|+|+||+|||+       ++++|++||+
T Consensus       339 Dl~~~~~-~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~  416 (550)
T PRK08184        339 DATLLAH-KDHWLVRETRGYLRRTL-KRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSAL  416 (550)
T ss_pred             Chhhhcc-cchHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECccc
Confidence            9874321 11100111122334455 669999999999997 9999999 9999999999999       9999999999


Q ss_pred             ccCCCCCchhhchHhhh-hCHHHHHHH--HHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhc
Q 004891          137 TLGVIPGFGGTQRLPRL-VGLSKAIEM--MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHR  213 (725)
Q Consensus       137 ~~Gl~p~~g~~~~l~r~-vG~~~a~~l--~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~  213 (725)
                      ++|++|++|++++|+|+ +|..+|++|  +++|++++|+||+++||||+|||++++++++.++|+++++.||.+++    
T Consensus       417 ~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~p~a~~----  492 (550)
T PRK08184        417 NFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIALEERASLSPDALT----  492 (550)
T ss_pred             cccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHHHHHHhCCHHHHH----
Confidence            99999999999999998 699999997  58999999999999999999999999999999999999999886443    


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHhCCHhHHH---HHHHHHhh
Q 004891          214 TDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRG---LVHVFFAQ  289 (725)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-l~~E~~~~~~~~~s~~~~~---~i~aF~~~  289 (725)
                                                      .+|++++.+...+++++ +..|.+.+..+++|+|+++   ++++|++|
T Consensus       493 --------------------------------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ek  540 (550)
T PRK08184        493 --------------------------------GMEANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYGTG  540 (550)
T ss_pred             --------------------------------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhccC
Confidence                                            56788999999999999 9999999999999999999   99999999


Q ss_pred             hhhcC
Q 004891          290 RATSK  294 (725)
Q Consensus       290 r~~~~  294 (725)
                      |+|..
T Consensus       541 r~~~f  545 (550)
T PRK08184        541 QKAQF  545 (550)
T ss_pred             CCCCC
Confidence            99874

>PRK05869 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.4e-42  Score=349.50  Aligned_cols=203  Identities=30%  Similarity=0.471  Sum_probs=181.2

Q ss_pred             CcEEEEEe----cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 004891            4 PRVTMEVG----NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (725)
Q Consensus         4 ~~i~~~~~----~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (725)
                      +.|.++..    +++|++||||||+.|+||.+|+.+|.++++++++|+++|+|||||.|++||+|+|++++..... .+.
T Consensus         3 ~~~~~~~~~~~~~~~i~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~-~~~   81 (222)
T PRK05869          3 EFVNVVVSDGSQDAGLATLLLSRPPTNALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSA-QEA   81 (222)
T ss_pred             cchhhhcccCcccCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccCh-hhH
Confidence            45666653    4889999999998899999999999999999999999999999999999999999999864321 111


Q ss_pred             cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (725)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  159 (725)
                      .......++++ +++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..++
T Consensus        82 ~~~~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a  160 (222)
T PRK05869         82 DTAARVRQQAV-DAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRA  160 (222)
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHHH
Confidence            11222334566 66999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhh
Q 004891          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWI  208 (725)
Q Consensus       160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~  208 (725)
                      ++++++|++++|+||+++||||+|+|++++.+++.++++++++.++.++
T Consensus       161 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~  209 (222)
T PRK05869        161 KELVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWARRFLDGPPHAL  209 (222)
T ss_pred             HHHHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999999999999999999999999999999887544

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=2.4e-42  Score=371.64  Aligned_cols=243  Identities=21%  Similarity=0.319  Sum_probs=204.7

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc---
Q 004891            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV---   79 (725)
Q Consensus         4 ~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~---   79 (725)
                      +.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||+|.|++||+|+|++++.........   
T Consensus        37 ~~V~~e~-~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~  115 (401)
T PLN02157         37 YQVLVEG-SGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAI  115 (401)
T ss_pred             CceEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence            4578888 7899999999995 7999999999999999999999999999999999999999999998642211111   


Q ss_pred             cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (725)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  159 (725)
                      ..+......++ ..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|. .+
T Consensus       116 ~~~~~~~~~l~-~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~-~a  193 (401)
T PLN02157        116 REFFSSLYSFI-YLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGR-LG  193 (401)
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhH-HH
Confidence            11111111233 56899999999999999999999999999999999999999999999999999999999999995 89


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (725)
Q Consensus       160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (725)
                      ++|++||++++|+||+++||||++||++++ +++.+++.+++..++..+                               
T Consensus       194 ~~L~LTG~~i~A~eA~~~GLv~~vVp~~~l-~~~~~~~~~i~~~~p~av-------------------------------  241 (401)
T PLN02157        194 EYLGLTGLKLSGAEMLACGLATHYIRSEEI-PVMEEQLKKLLTDDPSVV-------------------------------  241 (401)
T ss_pred             HHHHHcCCcCCHHHHHHcCCceEEeCHhHH-HHHHHHHHHHHcCCHHHH-------------------------------
Confidence            999999999999999999999999999998 677799999887665322                               


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 004891          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF  287 (725)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~  287 (725)
                           ..+|+.+... ..+....+..|...+..++.+++.++.+.+|.
T Consensus       242 -----~~~k~~~~~~-~~~~~~~l~~~~~~i~~~f~~~d~~ei~~al~  283 (401)
T PLN02157        242 -----ESCLEKCAEV-AHPEKTGVIRRIDLLEKCFSHDTVEEIIDSLE  283 (401)
T ss_pred             -----HHHHHHHhcc-cCCcchhHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence                 2344455443 23456777888899999999999999999993

>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=1.3e-43  Score=330.51  Aligned_cols=246  Identities=29%  Similarity=0.464  Sum_probs=220.4

Q ss_pred             cCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc-CCCCCcCCCCchhhhhccCCCcccccchhHHHH
Q 004891           12 NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTG-NGGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL   89 (725)
Q Consensus        12 ~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g-~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~   89 (725)
                      +.||.+|-+||| +.|+|+..|+++|.++++++..|+.+|+|+|++ .+..||+|+||+|-..++.. +...+...+..+
T Consensus        38 ~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~-Ev~~fV~~lR~~  116 (291)
T KOG1679|consen   38 DEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPS-EVTRFVNGLRGL  116 (291)
T ss_pred             CCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHH-HHHHHHHHHHHH
Confidence            679999999999 689999999999999999999999999999975 46789999999998876543 344555556666


Q ss_pred             HHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCC
Q 004891           90 VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI  169 (725)
Q Consensus        90 ~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~  169 (725)
                      + ..|.++|.||||+|.|.|+|||+|++|+||+|+|+++++||++|.+++++|+.|||+||||.+|...|+++++|++.+
T Consensus       117 ~-~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~alaKELIftarvl  195 (291)
T KOG1679|consen  117 F-NDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGVALAKELIFTARVL  195 (291)
T ss_pred             H-HHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhHHHHHhHhhhheec
Confidence            7 669999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHcCCcceecCcc----hHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhHH
Q 004891          170 TSEEGWKLGLIDAVVTSE----ELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ  245 (725)
Q Consensus       170 ~a~eA~~~Glv~~vv~~~----~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  245 (725)
                      ++.||...||||+||...    .....+.++|+++.-+.|.                                    |+.
T Consensus       196 ~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~gPi------------------------------------avr  239 (291)
T KOG1679|consen  196 NGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQGPI------------------------------------AVR  239 (291)
T ss_pred             cchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCCch------------------------------------hhh
Confidence            999999999999999765    5666677788877655553                                    233


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCC
Q 004891          246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (725)
Q Consensus       246 ~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  295 (725)
                      ..|.+|+.+.+.++..++..|..++++...+.|-.+++.+|.+||+|..+
T Consensus       240 ~aKlAIn~G~evdiasgl~iEe~CYaq~i~t~drLeglaaf~ekr~p~y~  289 (291)
T KOG1679|consen  240 LAKLAINLGMEVDIASGLSIEEMCYAQIIPTKDRLEGLAAFKEKRKPEYK  289 (291)
T ss_pred             HHHHHhccCceecccccccHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcC
Confidence            55778999999999999999999999999999999999999999998743

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.4e-42  Score=360.11  Aligned_cols=238  Identities=26%  Similarity=0.321  Sum_probs=203.7

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCC---
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA---   76 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~---   76 (725)
                      |+++.+.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++......   
T Consensus         1 ~~~~~v~~~~-~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~   79 (288)
T PRK08290          1 MEYEYVRYEV-AGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPG   79 (288)
T ss_pred             CCCceEEEEe-eCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccc
Confidence            8999999998 8899999999995 7999999999999999999999999999999999999999999987421110   


Q ss_pred             --------------Cccc-cc---chhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCccccc
Q 004891           77 --------------GDVS-LM---PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL  138 (725)
Q Consensus        77 --------------~~~~-~~---~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~  138 (725)
                                    .... .+   ......++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~l  158 (288)
T PRK08290         80 PDQHPTLWWDGATKPGVEQRYAREWEVYLGMC-RRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRM  158 (288)
T ss_pred             cccccccccccccccchhhHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCccccc
Confidence                          0000 01   01122344 56889999999999999999999999999999999999999999999


Q ss_pred             CCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCC
Q 004891          139 GVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLG  218 (725)
Q Consensus       139 Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~  218 (725)
                      |+ |+ .+++++++++|+.++++|++||++++|+||+++||||+|||++++.+++.++++++++.|+..++         
T Consensus       159 Gl-~~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------  227 (288)
T PRK08290        159 GI-PG-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMPPFGLR---------  227 (288)
T ss_pred             Cc-Cc-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHH---------
Confidence            98 54 45777899999999999999999999999999999999999999999999999999998875433         


Q ss_pred             ChHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHh-CCHh
Q 004891          219 SLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVH-GGYSGVLKEAKVFKELV-MLDT  278 (725)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~l~~E~~~~~~~~-~s~~  278 (725)
                                                 .+|+.++..... ++++++..|.......+ .+++
T Consensus       228 ---------------------------~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (288)
T PRK08290        228 ---------------------------LTKRAVNQTLDAQGFRAALDAVFDLHQLGHAHNAE  262 (288)
T ss_pred             ---------------------------HHHHHHHHHHhhccHHHHHHHHHHHHHHccccchh
Confidence                                       456777776664 68999999999888877 6666

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=100.00  E-value=7.9e-41  Score=359.14  Aligned_cols=291  Identities=21%  Similarity=0.292  Sum_probs=226.8

Q ss_pred             CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccc
Q 004891            2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (725)
Q Consensus         2 ~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~   80 (725)
                      +.+.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++..........
T Consensus         7 ~~~~v~~~~-~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~   85 (381)
T PLN02988          7 SQSQVLVEE-KSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWR   85 (381)
T ss_pred             cCCceEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchh
Confidence            356788887 7899999999996 79999999999999999999999999999999999999999999985321111110


Q ss_pred             ---ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHH
Q 004891           81 ---LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (725)
Q Consensus        81 ---~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~  157 (725)
                         .+......+. ..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|. 
T Consensus        86 ~~~~~f~~~~~l~-~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~-  163 (381)
T PLN02988         86 LGANFFSDEYMLN-YVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF-  163 (381)
T ss_pred             HHHHHHHHHHHHH-HHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH-
Confidence               1111111223 46889999999999999999999999999999999999999999999999999999999999997 


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhc---cCC------------------
Q 004891          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHR---TDK------------------  216 (725)
Q Consensus       158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~---~~~------------------  216 (725)
                      .+++|++||++++|++|+++||||++||++++.+.+.+++ +++..++.......+   ...                  
T Consensus       164 ~~~~l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f  242 (381)
T PLN02988        164 FGEYVGLTGARLDGAEMLACGLATHFVPSTRLTALEADLC-RIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCF  242 (381)
T ss_pred             HHHHHHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHH-HhhccCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHh
Confidence            6899999999999999999999999999999999888888 666554433322211   000                  


Q ss_pred             -CCChHHHHHHHH---------HHHHHHHHhCCCChhH-HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHhHHHH
Q 004891          217 -LGSLSEAREVLK---------LARLQAKKTAPNMPQH-QACLDVIEEGIVHGGYSGVLKEAKVFKELVM---LDTSRGL  282 (725)
Q Consensus       217 -~~~~~~~~~~~~---------~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~---s~~~~~~  282 (725)
                       ..++....+.+.         .++...+.-....|.. ..+.+.++.+...++.+.++.|.+.-..++.   ++||.||
T Consensus       243 ~~~~~~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EG  322 (381)
T PLN02988        243 SRRTVEEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEG  322 (381)
T ss_pred             CCCCHHHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHh
Confidence             001121211111         1222223333456644 6778889999999999999999999999998   6999999


Q ss_pred             HHHHHhh--hhhcCCC
Q 004891          283 VHVFFAQ--RATSKVP  296 (725)
Q Consensus       283 i~aF~~~--r~~~~~~  296 (725)
                      |++-+-.  +.|++.|
T Consensus       323 VRA~LiDKd~~P~W~p  338 (381)
T PLN02988        323 CRAILVDKDKNPKWEP  338 (381)
T ss_pred             HHHHhcCCCCCCCCCC
Confidence            9998763  3455444

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.6e-41  Score=343.07  Aligned_cols=227  Identities=26%  Similarity=0.338  Sum_probs=194.3

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccc
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~   80 (725)
                      |+ +.+.++. +++|++||||||+.|++|.+|+++|.++++.++  +++++||+||.|++||+|+|++++...  .....
T Consensus         1 ~~-~~i~~~~-~~~v~~itln~~~~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~--~~~~~   74 (229)
T PRK06213          1 MS-ELVSYTL-EDGVATITLDDGKVNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSG--AQAAI   74 (229)
T ss_pred             Cc-ceEEEEe-cCCEEEEEeCCCCCCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcc--hHhHH
Confidence            54 4688888 789999999999899999999999999999988  467999999999999999999988642  11112


Q ss_pred             ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCC-ceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (725)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~-a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  159 (725)
                      .+.....+++ +++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|+++++.++++++|...+
T Consensus        75 ~~~~~~~~l~-~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a  153 (229)
T PRK06213         75 ALLTAGSTLA-RRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAF  153 (229)
T ss_pred             HHHHHHHHHH-HHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHH
Confidence            2223344566 6689999999999999999999999999999999999 9999999999999888888899999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (725)
Q Consensus       160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (725)
                      ++|+++|++++|+||+++||||+|+|++++.+++.++++++++.++..++                              
T Consensus       154 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------  203 (229)
T PRK06213        154 QRAVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARELAGLNMGAHA------------------------------  203 (229)
T ss_pred             HHHHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHHHHHhcCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998875433                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 004891          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVF  270 (725)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~  270 (725)
                            .+|+.++......++++++.|...|
T Consensus       204 ------~~K~~l~~~~~~~l~~~~~~~~~~~  228 (229)
T PRK06213        204 ------ATKLKVRAAALEAIRAAIEGDAAEF  228 (229)
T ss_pred             ------HHHHHHHHHHHHHHHhchhhhhhhc
Confidence                  4456666655556667666666543

>PRK08788 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1e-40  Score=346.16  Aligned_cols=246  Identities=22%  Similarity=0.256  Sum_probs=197.0

Q ss_pred             CcEEEEEe-cCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEEcC-CCCCcCCCCchhhhhccC
Q 004891            4 PRVTMEVG-NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATS-----RDDVKAIVLTGN-GGRFSGGFDINVFQKVHG   75 (725)
Q Consensus         4 ~~i~~~~~-~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~-----~~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~   75 (725)
                      .+++++.+ +++|++|||| | +.|+||.+|+++|.+++++++.     |+++|+|||||. |++||+|+|++++.....
T Consensus        15 ~~~~i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~   93 (287)
T PRK08788         15 SQLRVYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIR   93 (287)
T ss_pred             CceEEEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhcc
Confidence            44544443 6889999996 6 6899999999999999999998     899999999999 799999999998753211


Q ss_pred             CCcccccchh---HHHHHHHHHh---hCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhch
Q 004891           76 AGDVSLMPDV---SVELVVNLIE---DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQR  149 (725)
Q Consensus        76 ~~~~~~~~~~---~~~~~~~~l~---~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~  149 (725)
                      ..+...+...   ..+.+ ..+.   .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++
T Consensus        94 ~~~~~~~~~~~~~~~~~~-~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~  172 (287)
T PRK08788         94 AGDRDALLAYARACVDGV-HAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSF  172 (287)
T ss_pred             ccchHHHHHHHHHHHHHH-HHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHH
Confidence            1111111111   11222 2233   799999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHH
Q 004891          150 LPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKL  229 (725)
Q Consensus       150 l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (725)
                      |++++|..++++|++||+.++|+||+++||||++||++++.+++.+++++++.. +....                    
T Consensus       173 l~~~vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~~-~~~~~--------------------  231 (287)
T PRK08788        173 LARRVGPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSKRK-LNGWR--------------------  231 (287)
T ss_pred             HHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHhcC-ccHHH--------------------
Confidence            999999999999999999999999999999999999999999999999999976 32111                    


Q ss_pred             HHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHh-HHHHHHHHHh
Q 004891          230 ARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDT-SRGLVHVFFA  288 (725)
Q Consensus       230 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~-~~~~i~aF~~  288 (725)
                                      .+|+..+.....++++.++.|...+..++++.+ .++-+..|..
T Consensus       232 ----------------a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (287)
T PRK08788        232 ----------------AMLRARRRVNPLSLEELMDITEIWVDAALQLEEKDLRTMERLVR  275 (287)
T ss_pred             ----------------HHHHHHHhhccCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence                            223333344446788888988877776666554 5566666653

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-40  Score=350.78  Aligned_cols=203  Identities=26%  Similarity=0.344  Sum_probs=176.0

Q ss_pred             CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCC---
Q 004891            2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG---   77 (725)
Q Consensus         2 ~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~---   77 (725)
                      ++++|.++. +++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++.......   
T Consensus         8 ~~~~v~~e~-~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~   86 (302)
T PRK08272          8 NLKTMTYEV-TGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGG   86 (302)
T ss_pred             CCCeEEEEe-ECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccc
Confidence            467889998 7899999999994 79999999999999999999999999999999999999999999986422110   


Q ss_pred             c----------------cc-----ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCccc
Q 004891           78 D----------------VS-----LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL  136 (725)
Q Consensus        78 ~----------------~~-----~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~  136 (725)
                      .                ..     .......+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~  165 (302)
T PRK08272         87 GAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGF-MSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPT  165 (302)
T ss_pred             cccccccccccccccccccchhhHHHHHHHHHHH-HHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcch
Confidence            0                00     0012223445 568899999999999999999999999999999999999999999


Q ss_pred             ccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhh
Q 004891          137 TLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR  209 (725)
Q Consensus       137 ~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~  209 (725)
                      ++|.+|+.   ..+++++|..+|++|++||++++|+||+++||||+|||++++.+++.++|++|++.|+..++
T Consensus       166 ~~gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~~~~a~~  235 (302)
T PRK08272        166 RVWGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAVPVNQLA  235 (302)
T ss_pred             hcccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            98666643   35788999999999999999999999999999999999999999999999999999876544

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=5e-39  Score=345.47  Aligned_cols=281  Identities=22%  Similarity=0.261  Sum_probs=218.0

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCC---cc
Q 004891            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG---DV   79 (725)
Q Consensus         4 ~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~---~~   79 (725)
                      +.|.++. .+++++||||||+ .|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.......   ..
T Consensus        42 ~~v~~e~-~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~  120 (407)
T PLN02851         42 DQVLVEG-RAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEEC  120 (407)
T ss_pred             CCeEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence            4577888 7899999999995 79999999999999999999999999999999999999999999986422111   11


Q ss_pred             cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (725)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  159 (725)
                      ..+......+. ..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|. .+
T Consensus       121 ~~~f~~~~~l~-~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~-~g  198 (407)
T PLN02851        121 KLFFENLYKFV-YLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGY-LG  198 (407)
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCH-HH
Confidence            11222222344 56889999999999999999999999999999999999999999999999999999999999997 49


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhh---ccC-------------------CC
Q 004891          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLH---RTD-------------------KL  217 (725)
Q Consensus       160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~---~~~-------------------~~  217 (725)
                      ++|++||++++|++|+++||+|++||++++ +.+.+.+.++...++.......   ...                   ..
T Consensus       199 ~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l-~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~  277 (407)
T PLN02851        199 EYLALTGQKLNGVEMIACGLATHYCLNARL-PLIEERLGKLLTDDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGH  277 (407)
T ss_pred             HHHHHhCCcCCHHHHHHCCCceeecCHhhH-HHHHHHHHhhccCCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCC
Confidence            999999999999999999999999999887 5566666555443322221110   000                   00


Q ss_pred             CChHHHHHHHH---------HHHHHHHHhCCCChh-HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh---CCHhHHHHHH
Q 004891          218 GSLSEAREVLK---------LARLQAKKTAPNMPQ-HQACLDVIEEGIVHGGYSGVLKEAKVFKELV---MLDTSRGLVH  284 (725)
Q Consensus       218 ~~~~~~~~~~~---------~~~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~---~s~~~~~~i~  284 (725)
                      .++....+.+.         .++...+.-....|. ...+.+.++.+...++++.++.|...-..++   .++||.|||+
T Consensus       278 ~sv~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVR  357 (407)
T PLN02851        278 DTVEEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVR  357 (407)
T ss_pred             CCHHHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHHH
Confidence            12222222111         122222333445664 4677888999999999999999999888887   4899999999


Q ss_pred             HHHh
Q 004891          285 VFFA  288 (725)
Q Consensus       285 aF~~  288 (725)
                      +-+-
T Consensus       358 A~LI  361 (407)
T PLN02851        358 ARLV  361 (407)
T ss_pred             HHhc
Confidence            9876

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=100.00  E-value=4.6e-39  Score=335.02  Aligned_cols=191  Identities=25%  Similarity=0.354  Sum_probs=167.7

Q ss_pred             EEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccC--CCcccccchhHHHHH
Q 004891           15 VAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHG--AGDVSLMPDVSVELV   90 (725)
Q Consensus        15 v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~--~~~~~~~~~~~~~~~   90 (725)
                      +++||||||+ .|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++.....  ......+.....+++
T Consensus        38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~  117 (360)
T TIGR03200        38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMV  117 (360)
T ss_pred             EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHH
Confidence            4569999995 7999999999999999999999999999999999 69999999998865321  111112222234455


Q ss_pred             HHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCC
Q 004891           91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSIT  170 (725)
Q Consensus        91 ~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~  170 (725)
                       +.|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|+++|++++
T Consensus       118 -~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~s  196 (360)
T TIGR03200       118 -SAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWS  196 (360)
T ss_pred             -HHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCc
Confidence             6689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCcceecCcchH------------HHHHHHHHHHHHhcCch
Q 004891          171 SEEGWKLGLIDAVVTSEEL------------LKVSRLWALDIAARRKP  206 (725)
Q Consensus       171 a~eA~~~Glv~~vv~~~~l------------~~~a~~~a~~la~~~~~  206 (725)
                      |+||+++||||+|||+.++            ++.+.++++.+...++.
T Consensus       197 A~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  244 (360)
T TIGR03200       197 AHKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGEFKA  244 (360)
T ss_pred             HHHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCCCcc
Confidence            9999999999999999888            77888888877776654

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=100.00  E-value=7.7e-38  Score=332.19  Aligned_cols=262  Identities=25%  Similarity=0.348  Sum_probs=244.7

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      |+||+|||+|.||++||..|+++|++|++||++++.++.+.++++..++.+.+.|.++.++....++++..++++ +.++
T Consensus         2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~   81 (308)
T PRK06129          2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA   81 (308)
T ss_pred             CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence            578999999999999999999999999999999999999999999999999999999888888888888888888 5679


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCCH
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA  466 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~  466 (725)
                      +||+||+|+|++.++++.+++++.+.++++++++|+||++++.++++.+.++.++++.||++|++.++++|+++++.|++
T Consensus        82 ~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~~~t~~  161 (308)
T PRK06129         82 DADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAP  161 (308)
T ss_pred             CCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999998999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeeEEE-cCCcchhhhhhhHHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCC---ccHHHHHHhh--
Q 004891          467 QVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQLLDLA--  538 (725)
Q Consensus       467 e~~~~~~~l~~~lGk~~v~v-~d~~Gfi~nRl~~a~~~Ea~~l~~~G-v~~~dID~~~-~~~G~p---~Gpf~~~D~~--  538 (725)
                      ++++.++++++.+|+.++++ ++.+||++||++.++++||+.++++| +++++||.++ .++|++   +|||.++|..  
T Consensus       162 ~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~  241 (308)
T PRK06129        162 ATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLNAP  241 (308)
T ss_pred             HHHHHHHHHHHHcCCEEEEecCCCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhcccc
Confidence            99999999999999999999 58999999999999999999999997 5999999999 889998   7999999987  


Q ss_pred             -chHHHHHHHHHHHhhCCCCCC-CcHHHHHHHH
Q 004891          539 -GYGVAAATSKEFDKAFPDRSF-QSPLVDLLLK  569 (725)
Q Consensus       539 -Gld~~~~~~~~l~~~~~~~~~-~~~~l~~~v~  569 (725)
                       |++........++.++++..+ |+|++.+|++
T Consensus       242 ~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~  274 (308)
T PRK06129        242 GGVADYAQRYGPMYRRMAAERGQPVPWDGELVA  274 (308)
T ss_pred             ccHHHHHHHHHHHHHhhccccCCCchhhHHHHH
Confidence             899999999999988887655 8888888887

>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=2e-39  Score=305.60  Aligned_cols=255  Identities=24%  Similarity=0.340  Sum_probs=220.1

Q ss_pred             CCcEEEE--EecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhcc----C
Q 004891            3 APRVTME--VGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVH----G   75 (725)
Q Consensus         3 ~~~i~~~--~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~----~   75 (725)
                      |+.+.+.  ..+..|.++.|||| +.|+||..|+.|+.++++.+..||++|+|||+|+|++||+|+|+..+....    .
T Consensus        18 ~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~~   97 (292)
T KOG1681|consen   18 YKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQPE   97 (292)
T ss_pred             cceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhccccc
Confidence            4444444  22567999999999 689999999999999999999999999999999999999999987765321    1


Q ss_pred             CCc-------ccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhc
Q 004891           76 AGD-------VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ  148 (725)
Q Consensus        76 ~~~-------~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~  148 (725)
                      ..+       ..+++..++..+ ..|.+||||||++|||+|+|+|+.|.-|||+|+|+++|.|..-|+.+|+..+.|...
T Consensus        98 ~dd~aR~g~~lrr~Ik~~Q~~~-t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~  176 (292)
T KOG1681|consen   98 GDDVARKGRSLRRIIKRYQDTF-TAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLN  176 (292)
T ss_pred             cchHhhhhHHHHHHHHHHHHHH-HHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHh
Confidence            111       223334455666 569999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhhhC-HHHHHHHHHcCCCCCHHHHHHcCCcceecC-cchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHH
Q 004891          149 RLPRLVG-LSKAIEMMLLSKSITSEEGWKLGLIDAVVT-SEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREV  226 (725)
Q Consensus       149 ~l~r~vG-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~-~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~  226 (725)
                      |||..|| ...++++.+|++.++|.||++.|||.+|+| .+++++.+..+|+.|+.++|.+.+                 
T Consensus       177 RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KSpvaVq-----------------  239 (292)
T KOG1681|consen  177 RLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASKSPVAVQ-----------------  239 (292)
T ss_pred             hhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCCceeee-----------------
Confidence            9999999 899999999999999999999999999996 578999999999999999985433                 


Q ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          227 LKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       227 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                                         -+|+.+..+.+++.++.|..-.-+-...+.|+|..+.+.+-++|+++..
T Consensus       240 -------------------gTK~~L~ysrehsv~~sLnyvatwNms~L~s~Dl~~av~a~m~k~k~~t  288 (292)
T KOG1681|consen  240 -------------------GTKENLLYSREHSVEESLNYVATWNMSMLLSDDLVKAVMAQMEKLKTVT  288 (292)
T ss_pred             -------------------chHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence                               4577888888899999998888777788889999999999888776653

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=100.00  E-value=1.7e-38  Score=323.54  Aligned_cols=198  Identities=24%  Similarity=0.299  Sum_probs=169.1

Q ss_pred             EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEEcCCCCCcCCCCchhhhhccCCCc-ccccc
Q 004891            6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVK-AIVLTGNGGRFSGGFDINVFQKVHGAGD-VSLMP   83 (725)
Q Consensus         6 i~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~-~vVl~g~g~~F~aG~Dl~~~~~~~~~~~-~~~~~   83 (725)
                      ++++. +++|++|+||||+.|+||.+|+++|.+++++++.|++++ +||++|.|++||+|+|++++........ ...+.
T Consensus         2 ~~~~~-~~~v~~i~Lnrp~~Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~   80 (239)
T PLN02267          2 CTLEK-RGNLFILTLTGDGEHRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMV   80 (239)
T ss_pred             ceeEe-cCCEEEEEeCCCCcCcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHH
Confidence            46777 789999999999779999999999999999999998875 7777999999999999998753211111 11122


Q ss_pred             hhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEee-CCceEeCcccccCCCCCchhhchHhhhhCHHHH-HH
Q 004891           84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA-IE  161 (725)
Q Consensus        84 ~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~-~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a-~~  161 (725)
                      ....+++ ..|.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|+++++.+|++++|..++ ++
T Consensus        81 ~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~~  159 (239)
T PLN02267         81 AKLRPLV-ADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARRD  159 (239)
T ss_pred             HHHHHHH-HHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHHHH
Confidence            3344556 56999999999999999999999999999999998 568999999999997334458899999999999 69


Q ss_pred             HHHcCCCCCHHHHHHcCCcceecCc-chHHHHHHHHHHHHHhcCc
Q 004891          162 MMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRK  205 (725)
Q Consensus       162 l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~  205 (725)
                      |+++|++++|+||+++||||+|+|+ +++.+++.++|+++++.++
T Consensus       160 llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~~~  204 (239)
T PLN02267        160 VLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAARKW  204 (239)
T ss_pred             HHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhccC
Confidence            9999999999999999999999985 6899999999999998754

>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=2.1e-37  Score=300.57  Aligned_cols=253  Identities=22%  Similarity=0.275  Sum_probs=224.6

Q ss_pred             CCCCcEEEEEecCcEEEEEeC-CCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc
Q 004891            1 MAAPRVTMEVGNDGVAIITLI-NPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~-~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~   78 (725)
                      |.+..+.++. ++|+..|.+| ||+ .|+++.+++.++..+|+.+.+|+++..+|++|.|++||+|.|++.+......+.
T Consensus         4 ~~~~~~vv~~-~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~   82 (266)
T KOG0016|consen    4 MRYREIVVTR-ENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDA   82 (266)
T ss_pred             ccccceEEEe-cCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCcc
Confidence            5677888888 8999999999 995 799999999999999999999999999999999999999999998876433221


Q ss_pred             ---ccccchhHH--HHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhh
Q 004891           79 ---VSLMPDVSV--ELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL  153 (725)
Q Consensus        79 ---~~~~~~~~~--~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~  153 (725)
                         .........  ..+.+.+.++|||+||.|||+|+|.|..+...||+++|+|+++|..|++++|++|++|+++.+|++
T Consensus        83 ~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~i  162 (266)
T KOG0016|consen   83 NEESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKI  162 (266)
T ss_pred             cccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHh
Confidence               111111111  123477899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHH
Q 004891          154 VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQ  233 (725)
Q Consensus       154 vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (725)
                      +|...|.||++.|++++|+||.+.|||+++++.+++.+.+..-++++++.+|..++                        
T Consensus       163 mG~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l~p~sl~------------------------  218 (266)
T KOG0016|consen  163 MGSASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKKIKQYSKLSPESLL------------------------  218 (266)
T ss_pred             hchhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHHHHHHhcCCHHHHH------------------------
Confidence            99999999999999999999999999999999999999999999999998876544                        


Q ss_pred             HHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhh
Q 004891          234 AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQR  290 (725)
Q Consensus       234 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r  290 (725)
                                  .+|++++......+..+.+.|...+...|.|+|+.+.+.+|+.+.
T Consensus       219 ------------~~K~L~rs~~k~~l~~an~~E~~~l~~~W~s~e~~~~~~~~~~~~  263 (266)
T KOG0016|consen  219 ------------GMKKLLRSNIKEELIKANEEECNVLLKQWVSAECLARFKQYLSKK  263 (266)
T ss_pred             ------------HHHHHHHHHHHHHHHHhhHHHHHHHHhhccChHHHHHHHHHhccc
Confidence                        357788888888889999999999999999999999999998754

>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

Probab=100.00  E-value=3.3e-38  Score=295.10  Aligned_cols=252  Identities=28%  Similarity=0.383  Sum_probs=204.3

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC--C-CCCcCCCCchhhhhc---cC
Q 004891            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--G-GRFSGGFDINVFQKV---HG   75 (725)
Q Consensus         3 ~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~--g-~~F~aG~Dl~~~~~~---~~   75 (725)
                      |..|.++...++|+.||||||. +|++.+..+.||.+++..++.|++|.+|||||.  | +.||+|+|-+--...   ..
T Consensus        17 y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~   96 (282)
T COG0447          17 YEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVD   96 (282)
T ss_pred             cceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccC
Confidence            5678899854899999999995 899999999999999999999999999999985  4 689999998654331   11


Q ss_pred             CCcccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhC
Q 004891           76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG  155 (725)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG  155 (725)
                      +....++.  ..+ +.+.|+.+||||||.|+|+|+|||-.|-+-||+.||+++|+|+....++|-+-++.|+..|.|.||
T Consensus        97 d~~~~rLn--vLd-lQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VG  173 (282)
T COG0447          97 DDGIPRLN--VLD-LQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVG  173 (282)
T ss_pred             CccCcccc--hhh-HHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhh
Confidence            11122211  112 236688999999999999999999999999999999999999999999999988888899999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHH
Q 004891          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK  235 (725)
Q Consensus       156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (725)
                      ..+|+|+.+.++.++|+||+++|+||.|||.++|++++.+|++++.++||.++|-                         
T Consensus       174 qKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kSP~AlR~-------------------------  228 (282)
T COG0447         174 QKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAREMLAKSPTALRM-------------------------  228 (282)
T ss_pred             hhhhHHhhhhhhhccHHHHHhcCceeeeccHHHHHHHHHHHHHHHHhcChHHHHH-------------------------
Confidence            9999999999999999999999999999999999999999999999999865541                         


Q ss_pred             HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                                  ++........++.-.-+....+-.....++|++|+..+|++||+|..
T Consensus       229 ------------LK~Afnad~DGlaG~q~~ag~at~L~YmTdEa~EGr~AF~eKR~Pdf  275 (282)
T COG0447         229 ------------LKAAFNADCDGLAGLQELAGNATLLYYMTDEAQEGRDAFLEKRKPDF  275 (282)
T ss_pred             ------------HHHHhcCCCchhhHHHHhcccceEEEEechhhhhhHHHHhhccCCCh
Confidence                        11111111122222112222333445779999999999999999864

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=100.00  E-value=4.1e-36  Score=292.28  Aligned_cols=180  Identities=40%  Similarity=0.620  Sum_probs=161.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCCC
Q 004891          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD  389 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD  389 (725)
                      ||+|||+|.||.+||..++.+|++|++||++++.++.+.+++++.++..++++.+++++....+++++++++++.+.+||
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~ad   80 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVDAD   80 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCTES
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhhhh
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999998877999


Q ss_pred             EEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCCHHHH
Q 004891          390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVI  469 (725)
Q Consensus       390 lVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~  469 (725)
                      +||||+||++++|+++|++|++.+++++||+||||++++++++..+.+|+||+|+|||+|++.+|+|||++++.|+++++
T Consensus        81 lViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~  160 (180)
T PF02737_consen   81 LVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPKTSPETV  160 (180)
T ss_dssp             EEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS-HHHH
T ss_pred             eehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCCCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCeeEEEcCC
Q 004891          470 LDLMTVGKIIKKVPVVVGNC  489 (725)
Q Consensus       470 ~~~~~l~~~lGk~~v~v~d~  489 (725)
                      +++..+++.+||.|++++|+
T Consensus       161 ~~~~~~~~~~gk~pv~v~D~  180 (180)
T PF02737_consen  161 DRVRALLRSLGKTPVVVKDT  180 (180)
T ss_dssp             HHHHHHHHHTT-EEEEEES-
T ss_pred             HHHHHHHHHCCCEEEEecCC
Confidence            99999999999999999874

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=8.9e-36  Score=275.84  Aligned_cols=245  Identities=23%  Similarity=0.342  Sum_probs=212.5

Q ss_pred             cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHH
Q 004891           12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV   90 (725)
Q Consensus        12 ~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~   90 (725)
                      +++|-.|+|++|+ +|+|+.+|+.+|.+.+....++.++|+|||+..|+.||+|.||+|+...+..+-.........+.+
T Consensus        39 ~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~haevFqtc~dvm  118 (287)
T KOG1682|consen   39 HNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAEVFQTCTDVM  118 (287)
T ss_pred             ccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCccchHHHHHHHHHHHHH
Confidence            5899999999995 899999999999999999888889999999999999999999999987544333344445555677


Q ss_pred             HHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCC
Q 004891           91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSIT  170 (725)
Q Consensus        91 ~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~  170 (725)
                       +.|+++|.||||-|||.|..+||.|...||++||+++++|..|.+++|++-...|. -|.|.+++..+.+|++||.+|+
T Consensus       119 -n~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGv-AlaRavpRkva~~ML~Tg~Pi~  196 (287)
T KOG1682|consen  119 -NDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGV-ALARAVPRKVAAYMLMTGLPIT  196 (287)
T ss_pred             -HHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcch-hHhhhcchhHHHHHHHhCCCCc
Confidence             56999999999999999999999999999999999999999999999998655543 4899999999999999999999


Q ss_pred             HHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004891          171 SEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDV  250 (725)
Q Consensus       171 a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  250 (725)
                      ++||+..|||.+|||.+++..++.+++.+|...+...+.                                    .-|+.
T Consensus       197 ~eeAl~sGlvskvVp~~el~~e~~~i~~~i~~~srav~s------------------------------------lgk~f  240 (287)
T KOG1682|consen  197 GEEALISGLVSKVVPAEELDKEIEEITNAIKAKSRAVIS------------------------------------LGKEF  240 (287)
T ss_pred             hHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhhhHHHHHH------------------------------------HHHHH
Confidence            999999999999999999999999999999887654322                                    11333


Q ss_pred             HHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          251 IEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       251 ~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                      ......++..+++....+.+.+.++-.|++|+|.+|++||.+.+
T Consensus       241 ~y~q~~ms~~ea~~~~~~~m~~n~ql~d~kegiasf~~krp~~~  284 (287)
T KOG1682|consen  241 YYKQLAMSQAEAFSAAQEKMCENFQLGDTKEGIASFFEKRPPNW  284 (287)
T ss_pred             HHHHHHHhHHHHHHHHHHHHhhcccccchHHHHHHHhccCCCCc
Confidence            44445566677888888899999999999999999999998775

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=1.6e-35  Score=329.59  Aligned_cols=202  Identities=22%  Similarity=0.323  Sum_probs=174.2

Q ss_pred             CCcEEEEEecCcEEEEEeCCC-----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcC-CCCCcCCCCchh
Q 004891            3 APRVTMEVGNDGVAIITLINP-----------PVNALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGN-GGRFSGGFDINV   69 (725)
Q Consensus         3 ~~~i~~~~~~~~v~~i~l~~p-----------~~Nal~~~~~~~l~~~l~~~~-~~~~v~~vVl~g~-g~~F~aG~Dl~~   69 (725)
                      ++++.++. +++|++||||||           +.|++|.+|+.+|.+++++++ .|+++|+|||||. |++||+|+|+++
T Consensus        10 ~~~v~~~~-~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~   88 (546)
T TIGR03222        10 YRHWKLTF-DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFM   88 (546)
T ss_pred             CceEEEEe-eCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHH
Confidence            46788888 789999999996           569999999999999999999 7899999999987 589999999998


Q ss_pred             hhhccCCCcccccchhHH---HHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCC--ceEeCcccc-cCCCCC
Q 004891           70 FQKVHGAGDVSLMPDVSV---ELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELT-LGVIPG  143 (725)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~--a~~~~pe~~-~Gl~p~  143 (725)
                      +....... ...+.....   +.+.+.+.++||||||+|||+|+|||++|+++||+||++++  ++|++||++ +|++|+
T Consensus        89 ~~~~~~~~-~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~  167 (546)
T TIGR03222        89 LGLSTHAW-KVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPG  167 (546)
T ss_pred             Hhccccch-hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCc
Confidence            75321111 111111111   12225577899999999999999999999999999999986  799999997 999999


Q ss_pred             chhhchHh--hhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCch
Q 004891          144 FGGTQRLP--RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKP  206 (725)
Q Consensus       144 ~g~~~~l~--r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~  206 (725)
                      +|++.+++  +++|..+|++|+++|++++|+||++|||||+|||++++.+++.++|+++++.|+.
T Consensus       168 ~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~  232 (546)
T TIGR03222       168 TGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQSDR  232 (546)
T ss_pred             cchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHHhCCCC
Confidence            99999997  7999999999999999999999999999999999999999999999999998763

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=2.1e-35  Score=329.99  Aligned_cols=204  Identities=22%  Similarity=0.308  Sum_probs=176.9

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCC-----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcCC-CCCcCCCCc
Q 004891            1 MAAPRVTMEVGNDGVAIITLINP-----------PVNALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGNG-GRFSGGFDI   67 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p-----------~~Nal~~~~~~~l~~~l~~~~-~~~~v~~vVl~g~g-~~F~aG~Dl   67 (725)
                      |+++++.++. +++|++||||||           +.|++|.+|+.+|.+++++++ +|+++|+|||||.+ ++||+|+|+
T Consensus        12 ~~~~~~~~e~-~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL   90 (550)
T PRK08184         12 SQYRHWKLSF-DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANI   90 (550)
T ss_pred             CCCceEEEEe-eCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCH
Confidence            6788999999 789999999954           569999999999999999999 78999999999974 899999999


Q ss_pred             hhhhhccCCCcccccch---hHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCC--ceEeCcccc-cCCC
Q 004891           68 NVFQKVHGAGDVSLMPD---VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELT-LGVI  141 (725)
Q Consensus        68 ~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~--a~~~~pe~~-~Gl~  141 (725)
                      +++....... ...+..   .....+.+.+.++||||||+|||+|+|||++|+++|||||++++  ++|++||++ +|++
T Consensus        91 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~  169 (550)
T PRK08184         91 FMLGGSSHAW-KVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVL  169 (550)
T ss_pred             HhHhccccch-hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccC
Confidence            9875421111 001111   11122335678899999999999999999999999999999987  899999997 9999


Q ss_pred             CCchhhchHh--hhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCch
Q 004891          142 PGFGGTQRLP--RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKP  206 (725)
Q Consensus       142 p~~g~~~~l~--r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~  206 (725)
                      |++|++++|+  +++|..+|++|+++|++++|+||+++||||+|||++++.+++.++|++|++.++.
T Consensus       170 P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~~~~  236 (550)
T PRK08184        170 PGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELAAASDR  236 (550)
T ss_pred             CCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCCC
Confidence            9999999998  7899999999999999999999999999999999999999999999999998864

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=100.00  E-value=3.5e-35  Score=291.77  Aligned_cols=192  Identities=44%  Similarity=0.704  Sum_probs=173.7

Q ss_pred             EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc-ccccc
Q 004891            6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-VSLMP   83 (725)
Q Consensus         6 i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~-~~~~~   83 (725)
                      +.++. +++|++|+||+|+ .|++|.+++++|.++++.++.|+++++|||||.|+.||+|.|++++.......+ ...+.
T Consensus         1 i~~~~-~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~   79 (195)
T cd06558           1 VLVER-DGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFI   79 (195)
T ss_pred             CEEEE-ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHH
Confidence            35667 6799999999996 899999999999999999999999999999999999999999999876433221 22344


Q ss_pred             hhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHH
Q 004891           84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM  163 (725)
Q Consensus        84 ~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~  163 (725)
                      ....+++ +.+..+||||||+|||+|+|+|++++++||+||++++++|++||+++|++|++|++++|++++|...+++++
T Consensus        80 ~~~~~~~-~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~  158 (195)
T cd06558          80 RELQELL-RALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELL  158 (195)
T ss_pred             HHHHHHH-HHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHH
Confidence            4455666 678999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHH
Q 004891          164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALD  199 (725)
Q Consensus       164 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~  199 (725)
                      ++|++++++||+++|+||++++.+++.+++.+++++
T Consensus       159 l~g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~~a~~  194 (195)
T cd06558         159 LTGRRISAEEALELGLVDEVVPDEELLAAALELARR  194 (195)
T ss_pred             HcCCccCHHHHHHcCCCCeecChhHHHHHHHHHHhh
Confidence            999999999999999999999999999999988875

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=100.00  E-value=1.9e-34  Score=324.07  Aligned_cols=244  Identities=25%  Similarity=0.324  Sum_probs=207.2

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      .++||+|||+|+||++||..|+++|++|++||+++++++...+.+.......   +.+.... ....+++++++++ +.+
T Consensus         3 ~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~---~~l~~~~-~~~~g~i~~~~~~~ea~   78 (495)
T PRK07531          3 MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAY---AMLTDAP-LPPEGRLTFCASLAEAV   78 (495)
T ss_pred             CcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHH---hhhccch-hhhhhceEeeCCHHHHh
Confidence            3679999999999999999999999999999999999876543322221111   1111110 1123456777777 578


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCC
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS  465 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~  465 (725)
                      ++||+||+|+||+.++|+++|+++.+.+++++||+|+||+++++++++.+..+.++++.|||+|++.++++|+++|+.|+
T Consensus        79 ~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~  158 (495)
T PRK07531         79 AGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTS  158 (495)
T ss_pred             cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCC
Confidence            99999999999999999999999999999999999999999999999988889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCeeEEE-cCCcchhhhhhhHHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCC---ccHHHHHHhhc
Q 004891          466 AQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQLLDLAG  539 (725)
Q Consensus       466 ~e~~~~~~~l~~~lGk~~v~v-~d~~Gfi~nRl~~a~~~Ea~~l~~~G-v~~~dID~~~-~~~G~p---~Gpf~~~D~~G  539 (725)
                      +++++.++++++.+|+.++++ ++.+||++||++.++++||+.++++| +++++||.++ .++|++   +|||+++|+.|
T Consensus       159 ~e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g  238 (495)
T PRK07531        159 PETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWAQMGLFETYRIAG  238 (495)
T ss_pred             HHHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccccchHHHHHhcC
Confidence            999999999999999999999 59999999999999999999999997 6999999999 788875   79999999998


Q ss_pred             hH-HHHHHHHHHHhhC
Q 004891          540 YG-VAAATSKEFDKAF  554 (725)
Q Consensus       540 ld-~~~~~~~~l~~~~  554 (725)
                      ++ .+.+.++++.+.+
T Consensus       239 ~~~g~~~~~~~~~~~~  254 (495)
T PRK07531        239 GEAGMRHFLAQFGPCL  254 (495)
T ss_pred             cHHHHHHHHHHhchhh
Confidence            54 4555666665543

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=100.00  E-value=6.3e-35  Score=275.96  Aligned_cols=232  Identities=25%  Similarity=0.395  Sum_probs=213.1

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCC-HHHHHHhhcCcccccCc-cc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT-QDKANNALKMLKGVLDY-SE  384 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~-~~~~~~~~~~i~~~~~~-~~  384 (725)
                      ++.||+|+|.|.+|+++|..|+..||+|.+||+.+++++-+++.+++.+.++-+.|.+. .-.+++.+..|+.++++ +.
T Consensus         2 s~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~   81 (313)
T KOG2305|consen    2 SFGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNEL   81 (313)
T ss_pred             CccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHH
Confidence            46899999999999999999999999999999999999999999999988887755432 11234566788889998 77


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCC
Q 004891          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT  464 (725)
Q Consensus       385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t  464 (725)
                      +++|=.|-||+||++.+|+.++++|.+.+.|.+|++|+||++.++...+.+.+.++++..||.|||+..|++|++|.+-|
T Consensus        82 vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvElVPaPwT  161 (313)
T KOG2305|consen   82 VKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVELVPAPWT  161 (313)
T ss_pred             HhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchheeccCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCeeEEE-cCCcchhhhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCc---cHHHHHHhh
Q 004891          465 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPI---GPFQLLDLA  538 (725)
Q Consensus       465 ~~e~~~~~~~l~~~lGk~~v~v-~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv-~~~dID~~~-~~~G~p~---Gpf~~~D~~  538 (725)
                      +|+++++.+.+++.+|..||.. ++..||..||+.++++||..+++..|+ +..|+|.+| .|+|.+-   ||++.+.+-
T Consensus       162 sp~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dvD~VmS~GLG~RYAflG~lET~HLN  241 (313)
T KOG2305|consen  162 SPDTVDRTRALMRSIGQEPVTLKREILGFALNRIQYAILNETWRLVASGILNVNDVDAVMSAGLGPRYAFLGPLETAHLN  241 (313)
T ss_pred             ChhHHHHHHHHHHHhCCCCcccccccccceeccccHHHHHHHHHHHHccCcchhhHHHHHhcCCCcchhcccchhhhhcC
Confidence            9999999999999999999988 689999999999999999999999997 999999999 9999763   999988774

>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=99.97  E-value=1.2e-30  Score=263.21  Aligned_cols=290  Identities=24%  Similarity=0.307  Sum_probs=219.9

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC-CCCCcCCCCchhhhhccCCCcc--
Q 004891            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDV--   79 (725)
Q Consensus         4 ~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~--   79 (725)
                      +.|.++. .+...+||||||| .||+|.+|+..+.-.|..++.++.+++||+.|. |++||+|+|+........+.+.  
T Consensus        38 ~~VL~e~-~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~  116 (401)
T KOG1684|consen   38 DQVLVEG-KGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPE  116 (401)
T ss_pred             CceEEec-CCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchH
Confidence            4677787 7889999999997 799999999999999999999999999999887 5899999999866543322222  


Q ss_pred             -cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHH
Q 004891           80 -SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (725)
Q Consensus        80 -~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~  158 (725)
                       ..+...--.+. ..|.++.||.||.++|..+|||+.|+.+.-||||++++.|.+||..+|++|+.|++++|+|+.| ..
T Consensus       117 ~~~fF~~eYsl~-~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg-~l  194 (401)
T KOG1684|consen  117 VKKFFTEEYSLN-HLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG-YL  194 (401)
T ss_pred             HHHHHHHHHHHH-HHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc-HH
Confidence             22222111233 5689999999999999999999999999999999999999999999999999999999999999 88


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhh-------------------hccCCCC-
Q 004891          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL-------------------HRTDKLG-  218 (725)
Q Consensus       159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~-------------------~~~~~~~-  218 (725)
                      ..++.+||+++++.+|+..||.++-||.+.+..--.++...+...|...+...                   ...+... 
T Consensus       195 g~YLgLTG~rl~GaD~~~~GlATHyv~S~~l~~Lee~L~~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~~~Fs  274 (401)
T KOG1684|consen  195 GLYLGLTGQRLSGADALRCGLATHYVPSEKLPSLEERLLKNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVINKCFS  274 (401)
T ss_pred             HHhhhhccceecchHHHHhcchhhccchhhhhHHHHHHhhhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHHHhhc
Confidence            89999999999999999999999999987764444444423322221111110                   0000001 


Q ss_pred             --ChHHHHHHHH----------HHHHHHHHhCCCCh-hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHH
Q 004891          219 --SLSEAREVLK----------LARLQAKKTAPNMP-QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHV  285 (725)
Q Consensus       219 --~~~~~~~~~~----------~~~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~a  285 (725)
                        ...+..+.+.          .+....|+-....| ....+.+.++++....+++++..|.+.-.....+.||.||++|
T Consensus       275 ~~tVeeIie~lk~~q~~~~~~ewak~tlk~L~k~SPtSLkvT~r~i~egs~~tl~~~l~~Eyr~s~~~~~~~DF~EGvRA  354 (401)
T KOG1684|consen  275 ANTVEEIIEALKNYQQSADGSEWAKETLKTLKKMSPTSLKVTLRQIREGSKQTLDQCLTMEYRLSLRMLMRGDFCEGVRA  354 (401)
T ss_pred             cccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchhhhhhh
Confidence              1122222111          12223344445566 4467788899999999999999999999999999999999999


Q ss_pred             HHh--hhhhcCCC
Q 004891          286 FFA--QRATSKVP  296 (725)
Q Consensus       286 F~~--~r~~~~~~  296 (725)
                      -+-  .+.|+|.|
T Consensus       355 ~LIDKd~~PKW~p  367 (401)
T KOG1684|consen  355 VLIDKDQNPKWDP  367 (401)
T ss_pred             eeecCCcCCCCCC
Confidence            875  34455444

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=99.94  E-value=1e-25  Score=252.69  Aligned_cols=160  Identities=15%  Similarity=0.131  Sum_probs=147.7

Q ss_pred             CCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcch
Q 004891          413 CPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF  492 (725)
Q Consensus       413 ~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gf  492 (725)
                      +.+++++++..++.+.+..+....+|++++|+|||+|++.++++||++++.|++++++.+.++++.+||.||+++|.|||
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~gk~pi~v~d~~Gf  417 (507)
T PRK08268        338 SADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQDGKAVSVIRDSPGF  417 (507)
T ss_pred             ccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEeCCCccH
Confidence            45677777777766666776666788999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHHHHhhCCCCC-CCcHHHHHHHH
Q 004891          493 AVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRS-FQSPLVDLLLK  569 (725)
Q Consensus       493 i~nRl~~a~~~Ea~~l~~~Gv-~~~dID~~~-~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~-~~~~~l~~~v~  569 (725)
                      |+||++.+++||+++++++|+ +++|||.++ .++|||+|||+++|.+|+|.++++++.++..++++. .|++++++|++
T Consensus       418 i~nRll~~~~nEa~~ll~eGvas~~dID~a~~~g~G~p~GP~~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~ll~~~v~  497 (507)
T PRK08268        418 VAQRTVAMIVNEAADIAQQGIASPADIDLAMRLGLNYPLGPLAWGDRLGAARILRVLENLQALYGDPRYRPSPWLRRRAA  497 (507)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhCHHHHHHHHHHHHHHhCCCcCCcCHHHHHHHH
Confidence            999999999999999999997 999999999 899999999999999999999999999999999744 48999999999


Q ss_pred             cCC
Q 004891          570 SGR  572 (725)
Q Consensus       570 ~g~  572 (725)
                      +|.
T Consensus       498 ~G~  500 (507)
T PRK08268        498 LGL  500 (507)
T ss_pred             cCC
Confidence            875

>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1

Probab=99.90  E-value=3.5e-24  Score=187.30  Aligned_cols=94  Identities=40%  Similarity=0.689  Sum_probs=87.7

Q ss_pred             chhhhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHHHHhhCCCCCC-CcHHHHHH
Q 004891          491 GFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSF-QSPLVDLL  567 (725)
Q Consensus       491 Gfi~nRl~~a~~~Ea~~l~~~Gv-~~~dID~~~-~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~-~~~~l~~~  567 (725)
                      |||+||++.++++||++++++|+ +|+|||.++ .++|+|+|||+++|.+|+|++.++++.+.+.++++.+ |++++++|
T Consensus         1 GFi~nRl~~~~~~ea~~l~~egvas~~~ID~~~~~~~G~p~Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~m   80 (97)
T PF00725_consen    1 GFIVNRLLAALLNEAARLVEEGVASPEDIDRAMRYGLGFPMGPFELADLVGLDVVYHILEYLAAALGDRAFRPSPLLKEM   80 (97)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTHSSTHHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHHHHHH
Confidence            89999999999999999999995 999999999 8899999999999999999999999999999998855 79999999


Q ss_pred             HHcCCCccccCceeeec
Q 004891          568 LKSGRNGKANGKGLYTY  584 (725)
Q Consensus       568 v~~g~~G~k~g~Gfy~y  584 (725)
                      +++|++|+|+|+|||+|
T Consensus        81 v~~g~~G~k~g~Gfy~Y   97 (97)
T PF00725_consen   81 VEEGRLGRKSGKGFYDY   97 (97)
T ss_dssp             HHTT--BGGGTBSSSBE
T ss_pred             HHCCCCcCcCCCcceeC
Confidence            99999999999999998

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=99.87  E-value=4.2e-20  Score=206.83  Aligned_cols=119  Identities=15%  Similarity=0.168  Sum_probs=113.3

Q ss_pred             CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccH
Q 004891          454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGP  531 (725)
Q Consensus       454 ~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv-~~~dID~~~-~~~G~p~Gp  531 (725)
                      +.+||+++..|++++++++.++++.+||.|++++|.||||+||++.+++|||++++++|+ +++|||.+| .++|||+||
T Consensus       378 ~~vEv~~~~~Ts~e~~~~a~~~~~~~Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGvas~~dID~a~~~g~G~P~GP  457 (503)
T TIGR02279       378 KRIAIAAAAVNPDSATRKAIYYLQQAGKKVLQIADYPGLLILRTVAMLANEAADAVLQGVASAQDIDTAMRLGVNYPYGP  457 (503)
T ss_pred             CeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCcCH
Confidence            568899999999999999999999999999999999999999999999999999999998 899999999 899999999


Q ss_pred             HHHHHhhchHHHHHHHHHHHhhCCCCC-CCcHHHHHHHHcCC
Q 004891          532 FQLLDLAGYGVAAATSKEFDKAFPDRS-FQSPLVDLLLKSGR  572 (725)
Q Consensus       532 f~~~D~~Gld~~~~~~~~l~~~~~~~~-~~~~~l~~~v~~g~  572 (725)
                      |+++|.+|+|+++++++++++.+++.. .|++++++|+..|.
T Consensus       458 ~~~~D~~Gld~~~~~l~~l~~~~~~~~~~p~~~L~~~v~~g~  499 (503)
T TIGR02279       458 LAWAAQLGWQRILRVLENLQHHYGEERYRPSSLLRRRALLGS  499 (503)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHcCCCcCCcCHHHHHHHHcCC
Confidence            999999999999999999999999644 48999999999875

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1

Probab=99.78  E-value=4.3e-19  Score=155.11  Aligned_cols=87  Identities=34%  Similarity=0.553  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCC-CCCCCHHHH
Q 004891          624 IVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPSRFLE  702 (725)
Q Consensus       624 i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~~l~  702 (725)
                      |.||++.++++||++++++|++ |++|||.+++.|+|||+   |||+++|.+|++++.+.++.+.+.+++ .|.|+++++
T Consensus         3 i~nRl~~~~~~ea~~l~~egva-s~~~ID~~~~~~~G~p~---Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~   78 (97)
T PF00725_consen    3 IVNRLLAALLNEAARLVEEGVA-SPEDIDRAMRYGLGFPM---GPFELADLVGLDVVYHILEYLAAALGDRAFRPSPLLK   78 (97)
T ss_dssp             THHHHHHHHHHHHHHHHHTTSS-SHHHHHHHHHHHHTHSS---THHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHhCCCCC---ccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHHHH
Confidence            6899999999999999999998 89999999999999998   999999999999999999999999998 589999999


Q ss_pred             HHH-------HcCCCCCCC
Q 004891          703 ERA-------TKGIPLSAP  714 (725)
Q Consensus       703 ~~~-------~~g~gf~~~  714 (725)
                      +|+       |+|+|||+|
T Consensus        79 ~mv~~g~~G~k~g~Gfy~Y   97 (97)
T PF00725_consen   79 EMVEEGRLGRKSGKGFYDY   97 (97)
T ss_dssp             HHHHTT--BGGGTBSSSBE
T ss_pred             HHHHCCCCcCcCCCcceeC
Confidence            999       779999998

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.77  E-value=3.3e-18  Score=175.14  Aligned_cols=188  Identities=20%  Similarity=0.204  Sum_probs=140.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      +||+|||+|.||.+||.+|.++||+|++||+++++.....          .+.|             .....+. +++++
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~----------~~~G-------------a~~a~s~~eaa~~   57 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELL----------AAAG-------------ATVAASPAEAAAE   57 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHH----------HHcC-------------CcccCCHHHHHHh
Confidence            4899999999999999999999999999999998843221          1222             2223333 78899


Q ss_pred             CCEEEEeccCChHHHHHHHH--HHHHhCCCCeEEEecCCCCChH---HHhcccCCCCcEEEEecCCCCCCCCe-------
Q 004891          388 VDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHVMPL-------  455 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~p~~~~~l-------  455 (725)
                      ||+||.|||++.++...++.  .+.+.+++++++++++| ++++   ++++.+..    .|.+|++.|..+..       
T Consensus        58 aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmST-isp~~a~~~a~~~~~----~G~~~lDAPVsGg~~~A~~Gt  132 (286)
T COG2084          58 ADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMST-ISPETARELAAALAA----KGLEFLDAPVSGGVPGAAAGT  132 (286)
T ss_pred             CCEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECCC-CCHHHHHHHHHHHHh----cCCcEEecCccCCchhhhhCc
Confidence            99999999999999888884  58888999999986544 4443   33333322    26777776655533       


Q ss_pred             eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCC-cc---hhhhhhhHH----HHHHHHHHHHc-CCCHHHHHHHH-Hhc
Q 004891          456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC-TG---FAVNRAFFP----YSQSARLLVSL-GVDVFRIDSAI-RSF  525 (725)
Q Consensus       456 veii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~G---fi~nRl~~a----~~~Ea~~l~~~-Gv~~~dID~~~-~~~  525 (725)
                      +.|+.|.  +++.+++++++++.+|+.++++++. .|   .++|+++.+    .+.|++.+.+. |++++.+..++ .+.
T Consensus       133 LtimvGG--~~~~f~r~~pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~  210 (286)
T COG2084         133 LTIMVGG--DAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGA  210 (286)
T ss_pred             eEEEeCC--CHHHHHHHHHHHHHhcCceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccc
Confidence            3444443  7999999999999999999999875 23   356777543    34599999877 99999999999 543


Q ss_pred             C
Q 004891          526 G  526 (725)
Q Consensus       526 G  526 (725)
                      +
T Consensus       211 ~  211 (286)
T COG2084         211 A  211 (286)
T ss_pred             c
Confidence            3

>cd07014 S49_SppA Signal peptide peptidase A

Probab=99.76  E-value=2.2e-18  Score=167.98  Aligned_cols=144  Identities=19%  Similarity=0.142  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEEccccc
Q 004891           31 PIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL  110 (725)
Q Consensus        31 ~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~  110 (725)
                      -.+.+|.++++++++|+++|+|||++    ||.|+|+....             ...+.+ +.+.+++|||||+|||.|.
T Consensus        22 ~~~~~l~~~l~~a~~d~~v~~vvl~~----~~~gg~~~~~~-------------~~~~~i-~~~~~~~kpVia~v~G~a~   83 (177)
T cd07014          22 VSGDTTAAQIRDARLDPKVKAIVLRV----NSPGGSVTASE-------------VIRAEL-AAARAAGKPVVASGGGNAA   83 (177)
T ss_pred             cCHHHHHHHHHHHhcCCCceEEEEEe----eCCCcCHHHHH-------------HHHHHH-HHHHhCCCCEEEEECCchh
Confidence            35789999999999999999999997    68898876532             122445 5578899999999999999


Q ss_pred             chhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhc--------hHhhhhC--HHHHHHHHHcCCCCCHHHHHHcCCc
Q 004891          111 GGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ--------RLPRLVG--LSKAIEMMLLSKSITSEEGWKLGLI  180 (725)
Q Consensus       111 GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~--------~l~r~vG--~~~a~~l~l~g~~~~a~eA~~~Glv  180 (725)
                      |+|+.|+++||+++++++++|+++.+..+..+......        .+++..|  ....++++..|..++|++|++.|||
T Consensus        84 g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLV  163 (177)
T cd07014          84 SGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLV  163 (177)
T ss_pred             HHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCc
Confidence            99999999999999999999999988776433222222        4455555  8888999999999999999999999


Q ss_pred             ceecCcchHHHH
Q 004891          181 DAVVTSEELLKV  192 (725)
Q Consensus       181 ~~vv~~~~l~~~  192 (725)
                      |++.+.+++.+.
T Consensus       164 D~v~~~~e~~~~  175 (177)
T cd07014         164 DSLGSFDDAVAK  175 (177)
T ss_pred             ccCCCHHHHHHH
Confidence            999988877553

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.73  E-value=3.3e-17  Score=160.82  Aligned_cols=150  Identities=25%  Similarity=0.264  Sum_probs=118.5

Q ss_pred             EEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEE-cCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHH
Q 004891           16 AIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLT-GNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI   94 (725)
Q Consensus        16 ~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l   94 (725)
                      ++|.++.    .++..+...+.+.|+.+++++ ++.|+|. ..+     |+++..                ...++ +.|
T Consensus         2 ~vv~i~g----~I~~~~~~~l~~~l~~a~~~~-~~~vvl~InSp-----GG~v~~----------------~~~i~-~~l   54 (187)
T cd07020           2 YVLEING----AITPATADYLERAIDQAEEGG-ADALIIELDTP-----GGLLDS----------------TREIV-QAI   54 (187)
T ss_pred             EEEEEee----EEChHHHHHHHHHHHHHHhCC-CCEEEEEEECC-----CCCHHH----------------HHHHH-HHH
Confidence            5666653    366777889999999998665 7877775 322     233321                12444 567


Q ss_pred             hhCCCcEEEEEc---ccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCc--------------hhhchHhhhhCH-
Q 004891           95 EDCKKPIVAAVE---GLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGF--------------GGTQRLPRLVGL-  156 (725)
Q Consensus        95 ~~~~kp~Iaav~---G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~--------------g~~~~l~r~vG~-  156 (725)
                      ..+||||||+|+   |+|+|+|+.++++||+++++++++|+.+++..+..+..              +....+++..|. 
T Consensus        55 ~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~  134 (187)
T cd07020          55 LASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRN  134 (187)
T ss_pred             HhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            889999999999   99999999999999999999999999999985554432              245578898998 


Q ss_pred             -HHHHHHHHcCCCCCHHHHHHcCCcceecCcc-hHHHH
Q 004891          157 -SKAIEMMLLSKSITSEEGWKLGLIDAVVTSE-ELLKV  192 (725)
Q Consensus       157 -~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~-~l~~~  192 (725)
                       .++.+++++|+.++|+||+++||||+|+++. ++...
T Consensus       135 ~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~~  172 (187)
T cd07020         135 AEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLKK  172 (187)
T ss_pred             HHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHHH
Confidence             6899999999999999999999999999876 55543

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=99.72  E-value=1.4e-17  Score=158.63  Aligned_cols=91  Identities=29%  Similarity=0.426  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCC--CCCCC
Q 004891          621 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN--FFKPS  698 (725)
Q Consensus       621 ~~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~--~~~p~  698 (725)
                      .-.|+||+|.|+++||+++++.|.+ |-+|||.+|.+|.||||   |||+++|.+|+|++.-+|+-|.+.+++  .|+|+
T Consensus       199 pGFIVNRlLiPyl~ea~r~yerGdA-skeDIDtaMklGagyPM---GPfEL~DyvGLDt~kfvmdgwhe~~pe~~~f~ps  274 (298)
T KOG2304|consen  199 PGFIVNRLLIPYLMEAIRMYERGDA-SKEDIDTAMKLGAGYPM---GPFELADYVGLDTCKFVMDGWHEGYPEDSLFAPS  274 (298)
T ss_pred             CchhhhHHHHHHHHHHHHHHHhcCC-cHhhHHHHHhccCCCCC---ChHHHHHHhhHHHHHHHHHHHHhcCCcccccCCC
Confidence            4479999999999999999999999 99999999999999999   999999999999999999999999853  89999


Q ss_pred             HHHHHHH-------HcCCCCCCCC
Q 004891          699 RFLEERA-------TKGIPLSAPV  715 (725)
Q Consensus       699 ~~l~~~~-------~~g~gf~~~~  715 (725)
                      |+|.++|       |+|+|||+|.
T Consensus       275 Pll~klVaegklGrKtg~GfY~Yk  298 (298)
T KOG2304|consen  275 PLLDKLVAEGKLGRKTGEGFYKYK  298 (298)
T ss_pred             hHHHHHHhccccccccCccceecC
Confidence            9999999       7899999994

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.69  E-value=2e-16  Score=167.06  Aligned_cols=187  Identities=19%  Similarity=0.235  Sum_probs=135.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCCC
Q 004891          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD  389 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD  389 (725)
                      ||+|||+|.||.+||..|++.|++|++||+++++++...           +.|.            ....+..+.+++||
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g~------------~~~~~~~~~~~~aD   57 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELL-----------AAGA------------VTAETARQVTEQAD   57 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCCC------------cccCCHHHHHhcCC
Confidence            599999999999999999999999999999998876542           2221            11122226678999


Q ss_pred             EEEEeccCChHHHHHHHH--HHHHhCCCCeEEEecCCCCChH---HHhcccCCCCcEEEEecCCCCCCC-------Ceee
Q 004891          390 MVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHVM-------PLLE  457 (725)
Q Consensus       390 lVIeavpe~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~p~~~~-------~lve  457 (725)
                      +||+|+|++..++..++.  .+.+.++++++|++ +|+.++.   ++.+.+...    ++||+++|..+       ..++
T Consensus        58 ivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd-~st~~~~~~~~l~~~l~~~----g~~~~~~pv~g~~~~a~~g~l~  132 (291)
T TIGR01505        58 VIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVD-MSSISPIESKRFAKAVKEK----GIDYLDAPVSGGEIGAIEGTLS  132 (291)
T ss_pred             EEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc----CCCEEecCCCCCHHHHhcCCEE
Confidence            999999988777766653  36667788898875 4444443   344444322    45555433221       2245


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-Ccc---hhhhhhhHHH----HHHHHHHHHc-CCCHHHHHHHH-HhcC
Q 004891          458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTG---FAVNRAFFPY----SQSARLLVSL-GVDVFRIDSAI-RSFG  526 (725)
Q Consensus       458 ii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G---fi~nRl~~a~----~~Ea~~l~~~-Gv~~~dID~~~-~~~G  526 (725)
                      ++.+.  ++++++.++++++.+|+.++++++ .+|   +++|+++.+.    ++|++.+.+. |++++++..++ .+.+
T Consensus       133 i~~gg--~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~  209 (291)
T TIGR01505       133 IMVGG--DQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLA  209 (291)
T ss_pred             EEecC--CHHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcc
Confidence            55553  689999999999999999999975 555   4778887654    6799988866 89999999999 4444

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.67  E-value=8.1e-16  Score=162.97  Aligned_cols=188  Identities=17%  Similarity=0.210  Sum_probs=136.8

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      ++||+|||+|.||.++|..+++.|++|++||++++..+...           +.+             +..++++ +.++
T Consensus         2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~-----------~~g-------------~~~~~~~~e~~~   57 (296)
T PRK11559          2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVI-----------AAG-------------AETASTAKAVAE   57 (296)
T ss_pred             CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCC-------------CeecCCHHHHHh
Confidence            35899999999999999999999999999999998866532           112             1223344 4568


Q ss_pred             CCCEEEEeccCChHHHHHHH--HHHHHhCCCCeEEEecCCCCChH---HHhcccCCCCcEEEEecCCCCCCC-------C
Q 004891          387 DVDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHVM-------P  454 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~p~~~~-------~  454 (725)
                      +||+||+|+|++..++..++  ..+.+.++++++|++ +|+..+.   ++.+.+...    +.||+++|..+       .
T Consensus        58 ~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid-~st~~~~~~~~l~~~~~~~----g~~~~d~pv~g~~~~a~~g  132 (296)
T PRK11559         58 QCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVID-MSSIAPLASREIAAALKAK----GIEMLDAPVSGGEPKAIDG  132 (296)
T ss_pred             cCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEEE-CCCCCHHHHHHHHHHHHHc----CCcEEEcCCCCCHHHHhhC
Confidence            99999999998887776655  347777888998874 4444443   344444322    56666655332       2


Q ss_pred             eeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-Ccchh---hhhhhHH----HHHHHHHHHHc-CCCHHHHHHHH-Hh
Q 004891          455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTGFA---VNRAFFP----YSQSARLLVSL-GVDVFRIDSAI-RS  524 (725)
Q Consensus       455 lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~Gfi---~nRl~~a----~~~Ea~~l~~~-Gv~~~dID~~~-~~  524 (725)
                      .++++.|.  ++++++.+.++++.+|+.++++++ .+|++   +|+++.+    .++|++.+++. |+++++++.++ .+
T Consensus       133 ~l~i~~gg--~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~  210 (296)
T PRK11559        133 TLSVMVGG--DKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGG  210 (296)
T ss_pred             cEEEEECC--CHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence            34565553  689999999999999999999964 56664   6776543    57899998876 89999999998 44


Q ss_pred             cC
Q 004891          525 FG  526 (725)
Q Consensus       525 ~G  526 (725)
                      ++
T Consensus       211 ~~  212 (296)
T PRK11559        211 LA  212 (296)
T ss_pred             cc
Confidence            43

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.66  E-value=2.3e-16  Score=166.32  Aligned_cols=93  Identities=28%  Similarity=0.393  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHH
Q 004891          622 KEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFL  701 (725)
Q Consensus       622 ~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l  701 (725)
                      -.+.||++.+++|||++|+++|++ +++|||.++++|+|||+   |||+++|.+|++.+.+.++.+.+.++++|.|+++|
T Consensus       185 Gf~~nRl~~~~~~ea~~~~~~gv~-~~~~iD~~~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~~l  260 (288)
T PRK09260        185 GFVTSRISALVGNEAFYMLQEGVA-TAEDIDKAIRLGLNFPM---GPLELGDLVGLDTRLNNLKYLHETLGEKYRPAPLL  260 (288)
T ss_pred             cHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhHHHHHHHHHHHHHHhCCCCCCCHHH
Confidence            368999999999999999999998 99999999999999998   99999999999999999999999999999999999


Q ss_pred             HHHH-------HcCCCCCCCCCCC
Q 004891          702 EERA-------TKGIPLSAPVSSS  718 (725)
Q Consensus       702 ~~~~-------~~g~gf~~~~~~~  718 (725)
                      ++|+       |+|+|||+|+++.
T Consensus       261 ~~~~~~g~~G~k~g~Gfy~y~~~~  284 (288)
T PRK09260        261 EKYVKAGRLGRKTGRGVYDYTNRE  284 (288)
T ss_pred             HHHHHCCCCccccCCEEEECCCCC
Confidence            9999       7899999996654

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=99.64  E-value=1.2e-14  Score=152.41  Aligned_cols=154  Identities=20%  Similarity=0.219  Sum_probs=119.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCCC
Q 004891          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD  389 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD  389 (725)
                      ||+|||+|.||.++|..|.++|++|++||++++.++++.           +.|.++           ..+++.+.+++||
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~~~aD   59 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAI-----------ERGLVD-----------EASTDLSLLKDCD   59 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HCCCcc-----------cccCCHhHhcCCC
Confidence            799999999999999999999999999999998876653           223211           1233445678999


Q ss_pred             EEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCC------------CCCeee
Q 004891          390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH------------VMPLLE  457 (725)
Q Consensus       390 lVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~------------~~~lve  457 (725)
                      +||+|+|  .....++++++.+.++++++|+ ++++.....+........+|+++||+..+.            .++...
T Consensus        60 lVilavp--~~~~~~~~~~l~~~l~~~~ii~-d~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~  136 (279)
T PRK07417         60 LVILALP--IGLLLPPSEQLIPALPPEAIVT-DVGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWV  136 (279)
T ss_pred             EEEEcCC--HHHHHHHHHHHHHhCCCCcEEE-eCcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEE
Confidence            9999999  5555678899999888898875 455556555554444455799999975442            344556


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004891          458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGN  488 (725)
Q Consensus       458 ii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  488 (725)
                      +++++.++++.++.++++++.+|+.++++++
T Consensus       137 l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~~  167 (279)
T PRK07417        137 LTPTENTDLNALAIVEELAVSLGSKIYTADP  167 (279)
T ss_pred             EccCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence            8888899999999999999999999998853

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.64  E-value=6.9e-16  Score=162.20  Aligned_cols=91  Identities=26%  Similarity=0.448  Sum_probs=86.1

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCC-CCCCC
Q 004891          620 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPS  698 (725)
Q Consensus       620 ~~~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~  698 (725)
                      +...|.||++++++|||++++++|++ +|+|||.++++|+|||+   |||+++|.+|++.+.++++.+.+.+++ +|.|+
T Consensus       184 ~~g~i~~Ri~~~~~~ea~~~~~~gv~-~~~diD~~~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~  259 (282)
T PRK05808        184 APGFVVNRILIPMINEAIFVLAEGVA-TAEDIDEGMKLGCNHPI---GPLALADLIGLDTCLAIMEVLYEGFGDSKYRPC  259 (282)
T ss_pred             ccChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCcCCCC
Confidence            45589999999999999999999998 89999999999999998   999999999999999999999999986 89999


Q ss_pred             HHHHHHH-------HcCCCCCCC
Q 004891          699 RFLEERA-------TKGIPLSAP  714 (725)
Q Consensus       699 ~~l~~~~-------~~g~gf~~~  714 (725)
                      ++|++|+       |+|+|||+|
T Consensus       260 ~~l~~~~~~g~~G~k~g~Gfy~y  282 (282)
T PRK05808        260 PLLRKMVAAGWLGRKTGRGFYDY  282 (282)
T ss_pred             HHHHHHHHCCCCccccCCcccCC
Confidence            9999998       678999998

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.63  E-value=7.8e-16  Score=161.35  Aligned_cols=89  Identities=25%  Similarity=0.384  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCC-CCCCCHH
Q 004891          622 KEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPSRF  700 (725)
Q Consensus       622 ~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~~  700 (725)
                      --+.||++.+++|||++|+++|++ |++|||.+++.|+|||+   |||+++|.+|++.++++++.+++.+++ +|.|+++
T Consensus       190 Gfi~nRi~~~~~~Ea~~ll~eGv~-~~~dID~~~~~g~G~p~---Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~p~~~  265 (286)
T PRK07819        190 GFVVNALLVPYLLSAIRMVESGFA-TAEDIDKAMVLGCAHPM---GPLRLSDLVGLDTVKAIADSMYEEFKEPLYAPPPL  265 (286)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhccHHHHHHHHHHHHHcCCCCCCCCHH
Confidence            368999999999999999999998 89999999999999998   999999999999999999999999886 8999999


Q ss_pred             HHHHH-------HcCCCCCCC
Q 004891          701 LEERA-------TKGIPLSAP  714 (725)
Q Consensus       701 l~~~~-------~~g~gf~~~  714 (725)
                      |++|+       |+|+|||+|
T Consensus       266 l~~~v~~g~~G~k~g~GfY~y  286 (286)
T PRK07819        266 LLRMVEAGLLGKKSGRGFYTY  286 (286)
T ss_pred             HHHHHHCCCCcccCCCEeccC
Confidence            99999       678999998

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=99.62  E-value=6.1e-15  Score=147.71  Aligned_cols=188  Identities=19%  Similarity=0.195  Sum_probs=133.0

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      +.++||+||+|.||++|+.+|.++||+|++|||+.++.+...           +.|             .+...++ |.+
T Consensus        34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~-----------~~G-------------a~v~~sPaeVa   89 (327)
T KOG0409|consen   34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQ-----------EAG-------------ARVANSPAEVA   89 (327)
T ss_pred             ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHH-----------Hhc-------------hhhhCCHHHHH
Confidence            568999999999999999999999999999999998876643           333             1223333 778


Q ss_pred             cCCCEEEEeccCChHHHHHHHHH--HHHhCCCCeEEEecCCCCCh---HHHhcccCCCCcEEEEecCCCCCCC-------
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDL---NIVGEKTSSQDRIIGAHFFSPAHVM-------  453 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~--l~~~~~~~~ii~s~tS~~~~---~~l~~~~~~~~r~ig~h~~~p~~~~-------  453 (725)
                      ++||+||.+||+..+++..++..  +.+.++++.......||+.+   .++++.....    +..|.+.|..+       
T Consensus        90 e~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~----~~~~vDAPVSGg~~~A~~  165 (327)
T KOG0409|consen   90 EDSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNK----GGRFVDAPVSGGVKGAEE  165 (327)
T ss_pred             hhcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhC----CCeEEeccccCCchhhhc
Confidence            99999999999999999888865  44444554443223344443   3566555432    33333333222       


Q ss_pred             CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCC-cc---hhhhhhhHHH----HHHHHHHHHc-CCCHHHHHHHH-H
Q 004891          454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC-TG---FAVNRAFFPY----SQSARLLVSL-GVDVFRIDSAI-R  523 (725)
Q Consensus       454 ~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~G---fi~nRl~~a~----~~Ea~~l~~~-Gv~~~dID~~~-~  523 (725)
                      ..+.+..|  .+++.++.+.++++.+||+.++++.. .|   -+.|+++.+.    +.|++.+.+. |+++..+-.++ .
T Consensus       166 G~Ltimag--Gde~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~  243 (327)
T KOG0409|consen  166 GTLTIMAG--GDEALFEAASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNT  243 (327)
T ss_pred             CeEEEEec--CcHHHHHHHHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhc
Confidence            23455555  47999999999999999999999653 22   4667765432    3489988876 99999988888 5


Q ss_pred             h
Q 004891          524 S  524 (725)
Q Consensus       524 ~  524 (725)
                      +
T Consensus       244 G  244 (327)
T KOG0409|consen  244 G  244 (327)
T ss_pred             C
Confidence            4

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=99.61  E-value=2.2e-15  Score=159.39  Aligned_cols=93  Identities=25%  Similarity=0.380  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCC-CCCCCH
Q 004891          621 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPSR  699 (725)
Q Consensus       621 ~~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~  699 (725)
                      ...+.||++.+++|||++++++|++ +++|||.++++|+|||+   |||+++|.+|++.+.+.++.+++.+++ +|.|++
T Consensus       186 ~g~i~nri~~~~~~ea~~~~~~gv~-~~~~iD~~~~~g~g~~~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~~  261 (295)
T PLN02545        186 PGFIVNRILMPMINEAFYALYTGVA-SKEDIDTGMKLGTNHPM---GPLHLADFIGLDTCLSIMKVLHEGLGDSKYRPCP  261 (295)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCC---CHHHHHHHhchHHHHHHHHHHHHHcCCCcCCCCH
Confidence            3479999999999999999999998 89999999999999998   999999999999999999999999886 899999


Q ss_pred             HHHHHH-------HcCCCCCCCCCC
Q 004891          700 FLEERA-------TKGIPLSAPVSS  717 (725)
Q Consensus       700 ~l~~~~-------~~g~gf~~~~~~  717 (725)
                      +|++|+       |+|+|||+|++.
T Consensus       262 ~l~~~~~~g~~G~k~g~Gfy~y~~~  286 (295)
T PLN02545        262 LLVQYVDAGRLGRKSGRGVYHYDGK  286 (295)
T ss_pred             HHHHHHHCCCCcccCCCeeeECCCC
Confidence            999998       678999999554

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=99.60  E-value=2.1e-15  Score=156.08  Aligned_cols=92  Identities=25%  Similarity=0.432  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhC--CCCCCC
Q 004891          621 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYG--NFFKPS  698 (725)
Q Consensus       621 ~~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~--~~~~p~  698 (725)
                      +--|.||++.++++||++++.+|++ ++++||.+|+.|+|||+   |||+++|.+|+|..++.++.+.+.++  +.|.|+
T Consensus       185 pGFi~NRil~~~~~eA~~l~~eGva-~~e~ID~~~~~~~G~pm---Gpf~l~D~~GlD~~~~i~~~~~~~~~~~~~~~~~  260 (307)
T COG1250         185 PGFIVNRLLAALLNEAIRLLEEGVA-TPEEIDAAMRQGLGLPM---GPFELADLIGLDVMLHIMKVLNETLGDDPYYRPP  260 (307)
T ss_pred             CceehHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhccCCCc---cHHHHHHHHhHHHHHHHHHHHHHhcCCCcccccc
Confidence            4478999999999999999999999 99999999999999998   99999999999999999999998887  378899


Q ss_pred             HHHHHHH-------HcCCCCCCCCC
Q 004891          699 RFLEERA-------TKGIPLSAPVS  716 (725)
Q Consensus       699 ~~l~~~~-------~~g~gf~~~~~  716 (725)
                      +++++|+       |+|+|||+|++
T Consensus       261 ~~~~~~v~~g~lG~Ksg~GfY~y~~  285 (307)
T COG1250         261 PLLRKLVEAGRLGRKSGKGFYDYRG  285 (307)
T ss_pred             HHHHHHHhcccccccCCCcceeccc
Confidence            9999998       78999999975

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.59  E-value=5.9e-15  Score=147.73  Aligned_cols=159  Identities=18%  Similarity=0.165  Sum_probs=113.5

Q ss_pred             cEEEEEeCCC--C-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHH
Q 004891           14 GVAIITLINP--P-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV   90 (725)
Q Consensus        14 ~v~~i~l~~p--~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~   90 (725)
                      +|++|.++.|  + .+.-+.-.+.+|.++|+.+..||++++|||+    .||+|+|+..+..             ....+
T Consensus         1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~----~~s~Gg~~~~~~~-------------~~~~l   63 (211)
T cd07019           1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR----VNSPGGSVTASEV-------------IRAEL   63 (211)
T ss_pred             CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE----EcCCCcCHHHHHH-------------HHHHH
Confidence            4777777766  2 2333445689999999999999999999998    7999999977532             12344


Q ss_pred             HHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcc------------cccCCCCC---chhh--------
Q 004891           91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPE------------LTLGVIPG---FGGT--------  147 (725)
Q Consensus        91 ~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe------------~~~Gl~p~---~g~~--------  147 (725)
                       +.+..++|||||+++|.|.|+|+.|+++||+++|++.+.|+.--            -++|+-+.   .++.        
T Consensus        64 -~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~  142 (211)
T cd07019          64 -AAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA  142 (211)
T ss_pred             -HHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCC
Confidence             55788999999999999999999999999999999999886332            12232111   1000        


Q ss_pred             ------chH-----------------hhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHH
Q 004891          148 ------QRL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK  191 (725)
Q Consensus       148 ------~~l-----------------~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~  191 (725)
                            ..+                 .|.+.+. ..+-+..|..+++++|++.||||++-..++..+
T Consensus       143 ~s~e~r~~~~~~ld~~~~~f~~~Va~~R~~~~~-~l~~~~~~~~~~~~~A~~~GLvD~i~~~~~~~~  208 (211)
T cd07019         143 LPPEAQLGLQLSIENGYKRFITLVADARHSTPE-QIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVA  208 (211)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHH-HHHHhcCCcEEeHHHHHHcCCcccCCCHHHHHH
Confidence                  000                 1111112 223355788999999999999999987666544

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>PLN02688 pyrroline-5-carboxylate reductase

Probab=99.59  E-value=6.2e-14  Score=146.23  Aligned_cols=186  Identities=19%  Similarity=0.122  Sum_probs=136.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC----cEEEE-eCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI----YVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~----~V~~~-d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (725)
                      +||+|||+|.||.+|+..|.++|+    +|++| |+++++.+...           +.|             +..+++. 
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~-----------~~g-------------~~~~~~~~   56 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQ-----------SLG-------------VKTAASNT   56 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHH-----------HcC-------------CEEeCChH
Confidence            479999999999999999999998    89999 99988765432           112             2223343 


Q ss_pred             ccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeE-ecC
Q 004891          383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEI-VRT  461 (725)
Q Consensus       383 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lvei-i~~  461 (725)
                      +.+++||+||.|++  .+...+++.++.+.++++++|+|.+++++...+....... +++..+|..|......+.+ +.+
T Consensus        57 e~~~~aDvVil~v~--~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~-~vvr~mP~~~~~~~~~~~~l~~~  133 (266)
T PLN02688         57 EVVKSSDVIILAVK--PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGR-RVVRVMPNTPCLVGEAASVMSLG  133 (266)
T ss_pred             HHHhcCCEEEEEEC--cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCC-CEEEECCCcHHHHhCceEEEEeC
Confidence            55789999999996  6667788888888888889888888999998888766544 7888888888777666554 457


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEEcCC-----cch--hhhhhhHHHHHHHH-HHHHcCCCHHHHHHHH
Q 004891          462 ERTSAQVILDLMTVGKIIKKVPVVVGNC-----TGF--AVNRAFFPYSQSAR-LLVSLGVDVFRIDSAI  522 (725)
Q Consensus       462 ~~t~~e~~~~~~~l~~~lGk~~v~v~d~-----~Gf--i~nRl~~a~~~Ea~-~l~~~Gv~~~dID~~~  522 (725)
                      ..++++.++.++++++.+|+ ++++++.     .|.  -...+++.++.... .....|+++++...++
T Consensus       134 ~~~~~~~~~~v~~l~~~~G~-~~~~~e~~~d~~~~~~g~g~a~~~~~~~a~~ea~~~~Gl~~~~a~~~~  201 (266)
T PLN02688        134 PAATADDRDLVATLFGAVGK-IWVVDEKLLDAVTGLSGSGPAYIFLAIEALADGGVAAGLPRDVALSLA  201 (266)
T ss_pred             CCCCHHHHHHHHHHHHhCCC-EEEeCHHHcchhHhhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            77899999999999999999 7776431     011  11122222222111 1445699999988887

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.58  E-value=4.9e-15  Score=156.04  Aligned_cols=91  Identities=18%  Similarity=0.287  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCCCC--CCC
Q 004891          621 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFF--KPS  698 (725)
Q Consensus       621 ~~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~--~p~  698 (725)
                      ...+.||++.+++|||++++++|++ |++|||.+|+.|+|||+   |||+++|.+|+|.+.++++.+.+.+++.+  .|+
T Consensus       188 pgfi~nRi~~~~~~ea~~l~~~g~a-~~~~iD~a~~~~~g~~~---Gp~~~~D~~Gld~~~~~~~~~~~~~~~~~~~~~~  263 (287)
T PRK08293        188 PGYILNSLLVPFLSAALALWAKGVA-DPETIDKTWMIATGAPM---GPFGILDIVGLDTAYNITSNWAEATDDENAKKAA  263 (287)
T ss_pred             CCHhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCc---CHHHHHHHhchHHHHHHHHHHHHHhCCcccccch
Confidence            3479999999999999999999999 99999999999999998   99999999999999999999999888743  489


Q ss_pred             HHHHHHH-------HcCCCCCCCC
Q 004891          699 RFLEERA-------TKGIPLSAPV  715 (725)
Q Consensus       699 ~~l~~~~-------~~g~gf~~~~  715 (725)
                      ++|++|+       |+|+|||+|+
T Consensus       264 ~~l~~~v~~g~~G~k~g~Gfy~y~  287 (287)
T PRK08293        264 ALLKEYIDKGKLGVATGEGFYNYP  287 (287)
T ss_pred             HHHHHHHHCCCCcccCCCccccCc
Confidence            9999999       7799999994

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.58  E-value=5.6e-15  Score=156.12  Aligned_cols=92  Identities=24%  Similarity=0.340  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCC-CCCCCHH
Q 004891          622 KEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPSRF  700 (725)
Q Consensus       622 ~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~~  700 (725)
                      -.+.||++.+++||++.++++|++ ++++||.++++|+|||+   |||+++|.+|++.+.++++.+.+.+++ +|.|+++
T Consensus       187 g~i~nRl~~~~~~ea~~~~~~g~~-~~~~iD~~~~~g~g~~~---GP~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~p~~~  262 (292)
T PRK07530        187 AFIVNRILLPMINEAIYTLYEGVG-SVEAIDTAMKLGANHPM---GPLELADFIGLDTCLSIMQVLHDGLADSKYRPCPL  262 (292)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCcCCCCHH
Confidence            368999999999999999999998 99999999999999997   999999999999999999999998876 8999999


Q ss_pred             HHHHH-------HcCCCCCCCCCC
Q 004891          701 LEERA-------TKGIPLSAPVSS  717 (725)
Q Consensus       701 l~~~~-------~~g~gf~~~~~~  717 (725)
                      |++|+       |+|+|||+|++.
T Consensus       263 l~~~v~~g~~G~k~g~Gfy~y~~~  286 (292)
T PRK07530        263 LVKYVEAGWLGRKTGRGFYDYRGE  286 (292)
T ss_pred             HHHHHHCCCCccccCCEeeeCCCC
Confidence            99999       889999999554

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.57  E-value=7e-15  Score=155.76  Aligned_cols=93  Identities=24%  Similarity=0.307  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCC-CCCCCHHH
Q 004891          623 EIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPSRFL  701 (725)
Q Consensus       623 ~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~~l  701 (725)
                      .+.||++.++++|++.++++|++ ++++||.++..|+|||++..|||+++|.+|++.+.+.++.+.+.+++ +|.|+++|
T Consensus       184 fi~nri~~~~l~EAl~l~e~g~~-~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~p~~~l  262 (314)
T PRK08269        184 YIVPRIQALAMNEAARMVEEGVA-SAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDILYYASRYLAGEIGPDRFAPPAIV  262 (314)
T ss_pred             cchHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence            58999999999999999999998 99999999999999999999999999999999999999999998887 99999999


Q ss_pred             HHHH-------HcCCCCCCCCC
Q 004891          702 EERA-------TKGIPLSAPVS  716 (725)
Q Consensus       702 ~~~~-------~~g~gf~~~~~  716 (725)
                      ++|+       |+|+|||+|++
T Consensus       263 ~~~v~~g~~G~ksG~GfY~y~~  284 (314)
T PRK08269        263 VRNMEEGRDGLRTGAGFYDYAG  284 (314)
T ss_pred             HHHHHCCCCcccCCCcceeCCC
Confidence            9999       78999999955

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=99.56  E-value=6.8e-15  Score=155.32  Aligned_cols=89  Identities=22%  Similarity=0.247  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCC-CCCCCHH
Q 004891          622 KEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPSRF  700 (725)
Q Consensus       622 ~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~~  700 (725)
                      --+.||++.+++|||++++++|++ |++|||++++.++|||+   |||+++|.+|+|.+.+.++.+.+.+++ +|.|+++
T Consensus       189 gfv~nRl~~~~~~ea~~~~~~g~a-~~~~iD~~~~~~~g~~~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~~~  264 (291)
T PRK06035        189 GFFTTRFIEGWLLEAIRSFEIGIA-TIKDIDEMCKLAFGFPM---GPFELMDIIGIDTVYHIAEYLYEETGDPQFIPPNS  264 (291)
T ss_pred             CeeHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhcCCCcc---CHHHHHHHhhHHHHHHHHHHHHHHcCCCcCCccHH
Confidence            358999999999999999999999 99999999999999998   999999999999999999999999986 8899999


Q ss_pred             HHHHH-------Hc-----CCCCCCC
Q 004891          701 LEERA-------TK-----GIPLSAP  714 (725)
Q Consensus       701 l~~~~-------~~-----g~gf~~~  714 (725)
                      |++|+       |+     |+|||+|
T Consensus       265 l~~~v~~g~~G~k~~~~~~g~Gfy~y  290 (291)
T PRK06035        265 LKQMVLNGYVGDKKVKYGSKGGWFDY  290 (291)
T ss_pred             HHHHHHCCCCcCCCCCCCCCceeeec
Confidence            99999       67     8999998

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=99.56  E-value=3e-13  Score=147.11  Aligned_cols=171  Identities=19%  Similarity=0.179  Sum_probs=122.6

Q ss_pred             CcceEEEEc-CCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccc
Q 004891          307 GVRKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (725)
Q Consensus       307 ~~~kIaVIG-~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l  385 (725)
                      .+++|+||| +|.||+++|..|.++|++|++||++...  .                   .               .+.+
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~--~-------------------~---------------~~~~  140 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWD--R-------------------A---------------EDIL  140 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcch--h-------------------H---------------HHHH
Confidence            568999998 9999999999999999999999986310  0                   0               0245


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhcccCCCCcEEEEecCCCCCCCCeee--EecC
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE--IVRT  461 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lve--ii~~  461 (725)
                      ++||+||+|+|+  .....++.++.+ +++++||++++|+  .++..+.....  .+|+|.||+.++....+..  ++..
T Consensus       141 ~~aDlVilavP~--~~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~G~~~~~~~~~~vv~~  215 (374)
T PRK11199        141 ADAGMVIVSVPI--HLTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMFGPDVGSLAKQVVVVC  215 (374)
T ss_pred             hcCCEEEEeCcH--HHHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCCCCCCcccCCCEEEEc
Confidence            789999999994  456788899988 8999999988775  33455555433  3699999998876654432  4556


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEEcC-Ccchhh---hhhhHHH-HHHHHHHHHcCCCHHHH
Q 004891          462 ERTSAQVILDLMTVGKIIKKVPVVVGN-CTGFAV---NRAFFPY-SQSARLLVSLGVDVFRI  518 (725)
Q Consensus       462 ~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~Gfi~---nRl~~a~-~~Ea~~l~~~Gv~~~dI  518 (725)
                      +.+++++++.+.++++.+|..++.++. ....++   +-+-... ..++..+.+.+.+++++
T Consensus       216 ~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshLpH~~a~al~~~l~~~~~~~~~~  277 (374)
T PRK11199        216 DGRQPEAYQWLLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAKENVDLEQL  277 (374)
T ss_pred             CCCCchHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence            667889999999999999999999852 222222   2221111 22455555566666554

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.55  E-value=3.3e-14  Score=150.24  Aligned_cols=186  Identities=15%  Similarity=0.128  Sum_probs=124.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      +||+|||+|.||.+||..|+++|++|++||+++++++...+           .|             +..+++. +.+++
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~-----------~g-------------~~~~~s~~~~~~~   57 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVD-----------KG-------------ATPAASPAQAAAG   57 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------cC-------------CcccCCHHHHHhc
Confidence            58999999999999999999999999999999988765421           12             1123333 56789


Q ss_pred             CCEEEEeccCChHHHHHHHH--HHHHhCCCCeEEEecCCCCChH---HHhcccC-CCCcEEEEecCCCC---CCCCeeeE
Q 004891          388 VDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN---IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEI  458 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~-~~~r~ig~h~~~p~---~~~~lvei  458 (725)
                      ||+||.|+|++..++..++.  .+.+.++++++++. +|+..+.   ++.+.+. ...+|+.......+   ..+.+. +
T Consensus        58 aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid-~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~-~  135 (296)
T PRK15461         58 AEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVID-MSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLL-L  135 (296)
T ss_pred             CCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEE-E
Confidence            99999999987766655542  46667788888764 4554443   3333332 22233322111111   111222 3


Q ss_pred             ecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCc-c---hhhhhhh----HHHHHHHHHHHHc-CCCHHHHHHHH
Q 004891          459 VRTERTSAQVILDLMTVGKIIKKVPVVVGNCT-G---FAVNRAF----FPYSQSARLLVSL-GVDVFRIDSAI  522 (725)
Q Consensus       459 i~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~-G---fi~nRl~----~a~~~Ea~~l~~~-Gv~~~dID~~~  522 (725)
                      +.|.  +++++++++++++.+|+.++++++.. |   .++|.++    ...+.|++.+.+. |++++.+-.++
T Consensus       136 ~~gg--~~~~~~~~~p~l~~~g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l  206 (296)
T PRK15461        136 LAGG--TAEQVERATPILMAMGNELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVM  206 (296)
T ss_pred             EECC--CHHHHHHHHHHHHHHcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            3332  68999999999999999999988631 1   2344432    3445699888866 99999977777

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.52  E-value=3.6e-14  Score=151.46  Aligned_cols=95  Identities=22%  Similarity=0.204  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHH
Q 004891          623 EIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLE  702 (725)
Q Consensus       623 ~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~  702 (725)
                      .+.||++.++++||+.++++|++ ++++||.++..|+|||++..|||+++|.+|++.+.+.++.+.+.++++|.|+++|+
T Consensus       185 ~i~nr~~~~~~~Ea~~l~~~g~~-~~~~id~~~~~~~g~~~~~~Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~~l~  263 (311)
T PRK06130        185 FIANRIQHALAREAISLLEKGVA-SAEDIDEVVKWSLGIRLALTGPLEQRDMNGLDVHLAVASYLYQDLENRTTPSPLLE  263 (311)
T ss_pred             cHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCccCCCHHHHhhhhccchHHHHHHHHHHhcCCcCCCCHHHH
Confidence            48999999999999999999999 89999999999999999999999999999999999999999999999999999999


Q ss_pred             HHH-------HcCCCCCCCCCCC
Q 004891          703 ERA-------TKGIPLSAPVSSS  718 (725)
Q Consensus       703 ~~~-------~~g~gf~~~~~~~  718 (725)
                      +|+       |+|+|||+|++..
T Consensus       264 ~~~~~g~~G~~~g~gfy~y~~~~  286 (311)
T PRK06130        264 EKVEAGELGAKSGQGFYAWPPER  286 (311)
T ss_pred             HHHHcCCccccCCCcCccCCCCC
Confidence            999       8899999997654

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.52  E-value=1.9e-14  Score=138.42  Aligned_cols=148  Identities=18%  Similarity=0.151  Sum_probs=100.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      |+||+|||+|.||++||.+|+++|++|++||+++++.++..+           .             ......++ +.++
T Consensus         1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~-----------~-------------g~~~~~s~~e~~~   56 (163)
T PF03446_consen    1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAE-----------A-------------GAEVADSPAEAAE   56 (163)
T ss_dssp             -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHH-----------T-------------TEEEESSHHHHHH
T ss_pred             CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHH-----------h-------------hhhhhhhhhhHhh
Confidence            689999999999999999999999999999999998777542           1             24445555 6678


Q ss_pred             CCCEEEEeccCChHHHHHHHHH--HHHhCCCCeEEEecCCCCChH---HHhcccCCCCcEEEEecCCCCCC--------C
Q 004891          387 DVDMVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHV--------M  453 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~--l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~p~~~--------~  453 (725)
                      +||+||.|+|++.+++ +++..  +.+.++++.+++. +|+..++   ++++.+...    |.||.+.|..        +
T Consensus        57 ~~dvvi~~v~~~~~v~-~v~~~~~i~~~l~~g~iiid-~sT~~p~~~~~~~~~~~~~----g~~~vdapV~Gg~~~a~~g  130 (163)
T PF03446_consen   57 QADVVILCVPDDDAVE-AVLFGENILAGLRPGKIIID-MSTISPETSRELAERLAAK----GVRYVDAPVSGGPPGAEEG  130 (163)
T ss_dssp             HBSEEEE-SSSHHHHH-HHHHCTTHGGGS-TTEEEEE--SS--HHHHHHHHHHHHHT----TEEEEEEEEESHHHHHHHT
T ss_pred             cccceEeecccchhhh-hhhhhhHHhhccccceEEEe-cCCcchhhhhhhhhhhhhc----cceeeeeeeeccccccccc
Confidence            9999999999666654 55555  8888899998875 4444444   333333222    3455443322        2


Q ss_pred             CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEE-EcC
Q 004891          454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVV-VGN  488 (725)
Q Consensus       454 ~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~-v~d  488 (725)
                      .+.-++.|   +++++++++++++.+|+++++ +++
T Consensus       131 ~l~~~~gG---~~~~~~~~~~~l~~~~~~v~~~~G~  163 (163)
T PF03446_consen  131 TLTIMVGG---DEEAFERVRPLLEAMGKNVYHYVGP  163 (163)
T ss_dssp             TEEEEEES----HHHHHHHHHHHHHHEEEEEEE-ES
T ss_pred             ceEEEccC---CHHHHHHHHHHHHHHhCCceeeeCc
Confidence            34445555   589999999999999998884 354

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.51  E-value=6.6e-13  Score=138.04  Aligned_cols=153  Identities=16%  Similarity=0.222  Sum_probs=126.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC----cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-c
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~----~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (725)
                      +||+|||+|+||.+|+..|.++|+    +|+++|+++++++.+.+.          .|             +..+++. +
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~----------~g-------------~~~~~~~~e   59 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK----------YG-------------ITITTNNNE   59 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh----------cC-------------cEEeCCcHH
Confidence            479999999999999999999885    699999999886654321          11             2223333 5


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEe-cCC
Q 004891          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTE  462 (725)
Q Consensus       384 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii-~~~  462 (725)
                      .+.+||+||.|++  ++...++++++.+.++++++|+|...++++..+...+....+++...|+.|...+..+..+ +++
T Consensus        60 ~~~~aDiIiLavk--P~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~  137 (272)
T PRK12491         60 VANSADILILSIK--PDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNE  137 (272)
T ss_pred             HHhhCCEEEEEeC--hHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCC
Confidence            5789999999999  5778888899998888899999999999999999988766689999999999888777765 567


Q ss_pred             CCCHHHHHHHHHHHHHcCCeeEEEc
Q 004891          463 RTSAQVILDLMTVGKIIKKVPVVVG  487 (725)
Q Consensus       463 ~t~~e~~~~~~~l~~~lGk~~v~v~  487 (725)
                      ..+++..+.+..++..+|+.. ++.
T Consensus       138 ~~~~~~~~~v~~lf~~~G~~~-~~~  161 (272)
T PRK12491        138 MVTEKDIKEVLNIFNIFGQTE-VVN  161 (272)
T ss_pred             CCCHHHHHHHHHHHHcCCCEE-EEc
Confidence            788999999999999999874 444

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.51  E-value=7.2e-13  Score=138.32  Aligned_cols=188  Identities=18%  Similarity=0.182  Sum_probs=135.8

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCC---CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-c
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNN---IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G---~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (725)
                      |+||+|||+|.||.+++..+.++|   ++|.+||+++++.++..+.+          +             +..+.+. +
T Consensus         2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~----------g-------------~~~~~~~~~   58 (267)
T PRK11880          2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY----------G-------------VRAATDNQE   58 (267)
T ss_pred             CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc----------C-------------CeecCChHH
Confidence            568999999999999999999999   78999999998866543210          1             1222333 4


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeee-EecCC
Q 004891          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTE  462 (725)
Q Consensus       384 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lve-ii~~~  462 (725)
                      .+.+||+||+|+|  .....++++++.+.+  +++|+|.+++++...+...+....+++.+||..|......+. ++++.
T Consensus        59 ~~~~advVil~v~--~~~~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~  134 (267)
T PRK11880         59 AAQEADVVVLAVK--PQVMEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANA  134 (267)
T ss_pred             HHhcCCEEEEEcC--HHHHHHHHHHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCC
Confidence            5688999999998  666778888887766  467778888999888887776566899999988877666555 45677


Q ss_pred             CCCHHHHHHHHHHHHHcCCeeEEEcCC--cchh-hh----hhhHHHHHHHHHH-HHcCCCHHHHHHHH
Q 004891          463 RTSAQVILDLMTVGKIIKKVPVVVGNC--TGFA-VN----RAFFPYSQSARLL-VSLGVDVFRIDSAI  522 (725)
Q Consensus       463 ~t~~e~~~~~~~l~~~lGk~~v~v~d~--~Gfi-~n----Rl~~a~~~Ea~~l-~~~Gv~~~dID~~~  522 (725)
                      .++++..+.++.+++.+|..+++..+.  .... ..    -+++.++...... .+.|+++++...++
T Consensus       135 ~~~~~~~~~v~~l~~~lG~~~~~~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~  202 (267)
T PRK11880        135 LVSAEDRELVENLLSAFGKVVWVDDEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLA  202 (267)
T ss_pred             CCCHHHHHHHHHHHHhCCeEEEECChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            789999999999999999754443221  1111 11    1223344344443 34689998877766

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.49  E-value=6.4e-13  Score=139.41  Aligned_cols=189  Identities=14%  Similarity=0.143  Sum_probs=134.4

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCC----CcEEEEeCChH-HHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccC
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G----~~V~~~d~~~e-~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (725)
                      +.+||+|||+|.||.+|+..|.++|    ++|+++|++++ .++....          ..|             +..+.+
T Consensus         2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~----------~~g-------------~~~~~~   58 (279)
T PRK07679          2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQ----------KYG-------------VKGTHN   58 (279)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHH----------hcC-------------ceEeCC
Confidence            3468999999999999999999998    78999999764 4333211          001             222333


Q ss_pred             c-ccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeE-e
Q 004891          382 Y-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEI-V  459 (725)
Q Consensus       382 ~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lvei-i  459 (725)
                      . +.+.+||+||.|||  ++...+++.++.+.+.++++|+|..++++++.+.........+++.||+.|......+.+ +
T Consensus        59 ~~e~~~~aDvVilav~--p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~  136 (279)
T PRK07679         59 KKELLTDANILFLAMK--PKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAIS  136 (279)
T ss_pred             HHHHHhcCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEe
Confidence            3 55789999999999  666667788888888888899888889999888887765567999999776655444444 4


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCc-----chhh--hhhhHHHHHHHHH--HHHcCCCHHHHHHHH
Q 004891          460 RTERTSAQVILDLMTVGKIIKKVPVVVGNCT-----GFAV--NRAFFPYSQSARL--LVSLGVDVFRIDSAI  522 (725)
Q Consensus       460 ~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~-----Gfi~--nRl~~a~~~Ea~~--l~~~Gv~~~dID~~~  522 (725)
                      +++..+++..+.+++++..+|+.. ++.+..     |...  ..+++ ++.|++.  ....|+++++...++
T Consensus       137 ~~~~~~~~~~~~v~~l~~~~G~~~-~v~e~~~~~~~a~~Gsgpa~~~-~~~eal~e~~~~~Gl~~~~a~~~~  206 (279)
T PRK07679        137 PSKHATAEHIQTAKALFETIGLVS-VVEEEDMHAVTALSGSGPAYIY-YVVEAMEKAAKKIGLKEDVAKSLI  206 (279)
T ss_pred             eCCCCCHHHHHHHHHHHHhCCcEE-EeCHHHhhhHHHhhcCHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHH
Confidence            777788999999999999999855 433211     1000  12222 3334332  445699999988887

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=99.48  E-value=1.5e-13  Score=144.93  Aligned_cols=182  Identities=19%  Similarity=0.131  Sum_probs=126.5

Q ss_pred             EEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccCCCEE
Q 004891          313 VIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMV  391 (725)
Q Consensus       313 VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~aDlV  391 (725)
                      |||+|.||.+||.+|+++|++|++||+++++++...           +.|             +..+++. +.+++||+|
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~g-------------~~~~~s~~~~~~~advV   56 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAV-----------AAG-------------AQAAASPAEAAEGADRV   56 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHH-----------HcC-------------CeecCCHHHHHhcCCEE
Confidence            689999999999999999999999999998876542           112             1223344 567899999


Q ss_pred             EEeccCChHHHHHHH--HHHHHhCCCCeEEEecCCCCChHHH---hcccCCCCcEEEEecCCCCCCC--------CeeeE
Q 004891          392 IEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLNIV---GEKTSSQDRIIGAHFFSPAHVM--------PLLEI  458 (725)
Q Consensus       392 Ieavpe~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~~~l---~~~~~~~~r~ig~h~~~p~~~~--------~lvei  458 (725)
                      |.|||.+..+...++  ..+.+.+++++++++. |++.+...   .+.+..    .|.+|.+.|..+        .+.-+
T Consensus        57 il~vp~~~~~~~v~~g~~~l~~~~~~g~~vid~-st~~p~~~~~~~~~~~~----~g~~~vdaPv~Gg~~~a~~g~l~~~  131 (288)
T TIGR01692        57 ITMLPAGQHVISVYSGDEGILPKVAKGSLLIDC-STIDPDSARKLAELAAA----HGAVFMDAPVSGGVGGARAGTLTFM  131 (288)
T ss_pred             EEeCCChHHHHHHHcCcchHhhcCCCCCEEEEC-CCCCHHHHHHHHHHHHH----cCCcEEECCCCCCHHHHhhCcEEEE
Confidence            999996665544433  5677778888888754 46555433   233221    144555433322        23333


Q ss_pred             ecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-Ccch---hhhhhhH----HHHHHHHHHHHc-CCCHHHHHHHH-HhcC
Q 004891          459 VRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTGF---AVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI-RSFG  526 (725)
Q Consensus       459 i~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~Gf---i~nRl~~----a~~~Ea~~l~~~-Gv~~~dID~~~-~~~G  526 (725)
                      +.|   +++.+++++++++.+|+.++++++ ..|.   ++|+++.    ..+.|++.+.+. |++++++..++ .+.|
T Consensus       132 ~gg---~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~  206 (288)
T TIGR01692       132 VGG---VAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSG  206 (288)
T ss_pred             ECC---CHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCc
Confidence            444   578999999999999999999986 3443   4455533    245699988876 89999999998 5544

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK08507 prephenate dehydrogenase; Validated

Probab=99.48  E-value=2.4e-12  Score=134.86  Aligned_cols=151  Identities=19%  Similarity=0.198  Sum_probs=110.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          310 KVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      ||+|||+|.||+++|..|.++|+  +|++||++++.++.+.           +.|..            ....+.+.+.+
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~-----------~~g~~------------~~~~~~~~~~~   58 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL-----------ELGLV------------DEIVSFEELKK   58 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH-----------HCCCC------------cccCCHHHHhc
Confidence            79999999999999999999996  7899999998866542           22211            11223333446


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccC--CCCcEEEEecCCC------CC------CC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS--SQDRIIGAHFFSP------AH------VM  453 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~--~~~r~ig~h~~~p------~~------~~  453 (725)
                      ||+||.|+|  .....+++.++.+ ++++++|++.+|+ ... +.+.+.  .+.+|++.||+.+      ..      .+
T Consensus        59 aD~Vilavp--~~~~~~~~~~l~~-l~~~~iv~d~gs~-k~~-i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g  133 (275)
T PRK08507         59 CDVIFLAIP--VDAIIEILPKLLD-IKENTTIIDLGST-KAK-IIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEG  133 (275)
T ss_pred             CCEEEEeCc--HHHHHHHHHHHhc-cCCCCEEEECccc-hHH-HHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhCC
Confidence            999999999  5666778888888 8889988875443 222 222111  2357999999742      21      24


Q ss_pred             CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004891          454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN  488 (725)
Q Consensus       454 ~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  488 (725)
                      ..+.+++++.++++.++.++++++.+|..++.+.+
T Consensus       134 ~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~  168 (275)
T PRK08507        134 KVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMDA  168 (275)
T ss_pred             CeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeCH
Confidence            45667788788999999999999999999999853

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=99.47  E-value=3.7e-13  Score=149.36  Aligned_cols=189  Identities=13%  Similarity=0.145  Sum_probs=126.9

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-c--
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S--  383 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~--  383 (725)
                      .+.+|||||+|.||.+||.+|+++|++|++|||++++.+...+..       ...|.          ..+....++ +  
T Consensus         5 ~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~-------~~~Ga----------~~~~~a~s~~e~v   67 (493)
T PLN02350          5 ALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGN----------LPLYGFKDPEDFV   67 (493)
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhh-------hhcCC----------cccccCCCHHHHH
Confidence            356899999999999999999999999999999999887654310       00021          011123333 2  


Q ss_pred             -cccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhcccCCCCcEEEEecCCCCC--------C
Q 004891          384 -EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAH--------V  452 (725)
Q Consensus       384 -~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~~~~r~ig~h~~~p~~--------~  452 (725)
                       .++.+|+||.|||.+..+.. ++..+.+.+.++.||++.+++.+..  .+.+.+...    |+||+..|.        .
T Consensus        68 ~~l~~~dvIi~~v~~~~aV~~-Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~----Gi~fldapVSGG~~gA~~  142 (493)
T PLN02350         68 LSIQKPRSVIILVKAGAPVDQ-TIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEK----GLLYLGMGVSGGEEGARN  142 (493)
T ss_pred             hcCCCCCEEEEECCCcHHHHH-HHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHc----CCeEEeCCCcCCHHHhcC
Confidence             34459999999997777654 4477888888999887654443322  333333211    555554332        2


Q ss_pred             CCeeeEecCCCCCHHHHHHHHHHHHHcCCe------eEEEcCCcc--h---hh-hhhhH---HHHHHHHHHHHc--CCCH
Q 004891          453 MPLLEIVRTERTSAQVILDLMTVGKIIKKV------PVVVGNCTG--F---AV-NRAFF---PYSQSARLLVSL--GVDV  515 (725)
Q Consensus       453 ~~lveii~~~~t~~e~~~~~~~l~~~lGk~------~v~v~d~~G--f---i~-nRl~~---a~~~Ea~~l~~~--Gv~~  515 (725)
                      ++  .++.|.  +++++++++++++.++.+      ++++++ +|  .   ++ |-+.+   ..+.|++.+++.  |+++
T Consensus       143 G~--~im~GG--~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~-~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~  217 (493)
T PLN02350        143 GP--SLMPGG--SFEAYKNIEDILEKVAAQVDDGPCVTYIGP-GGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSN  217 (493)
T ss_pred             CC--eEEecC--CHHHHHHHHHHHHHHhhhcCCCCcEEEeCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCH
Confidence            23  345544  699999999999999954      788886 33  2   33 44433   334599988865  8999


Q ss_pred             HHHHHHH
Q 004891          516 FRIDSAI  522 (725)
Q Consensus       516 ~dID~~~  522 (725)
                      +++-.++
T Consensus       218 ~~l~~vf  224 (493)
T PLN02350        218 EELAEVF  224 (493)
T ss_pred             HHHHHHH
Confidence            9999885

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=99.46  E-value=2.7e-13  Score=154.75  Aligned_cols=167  Identities=22%  Similarity=0.262  Sum_probs=131.8

Q ss_pred             cCcEEEEEeCCC--C-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC---CCCCcCCCCchhhhhccCCCcccccchh
Q 004891           12 NDGVAIITLINP--P-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN---GGRFSGGFDINVFQKVHGAGDVSLMPDV   85 (725)
Q Consensus        12 ~~~v~~i~l~~p--~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~---g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   85 (725)
                      +++|++|+++.+  + .|..+....+.+.+.|+.+..|++||+|||+-.   |..||+    .                .
T Consensus       307 ~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~as----e----------------~  366 (584)
T TIGR00705       307 QDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS----E----------------I  366 (584)
T ss_pred             CCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHH----H----------------H
Confidence            678999999877  2 344444456788899999999999999999843   233432    1                1


Q ss_pred             HHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceE------eCcc------cccCCCCCchhhchHhh-
Q 004891           86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL------GLPE------LTLGVIPGFGGTQRLPR-  152 (725)
Q Consensus        86 ~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~------~~pe------~~~Gl~p~~g~~~~l~r-  152 (725)
                      ..+.+ ..+...+|||||.++|.|.+||+.++++||.++|++.+.+      +.+.      .++|+.|....+..+.. 
T Consensus       367 i~~~i-~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~  445 (584)
T TIGR00705       367 IRREL-ARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANV  445 (584)
T ss_pred             HHHHH-HHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCC
Confidence            12333 3466788999999999999999999999999999999877      5553      58999988777766554 


Q ss_pred             ---------------------------hhCHHH-----HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHH
Q 004891          153 ---------------------------LVGLSK-----AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDI  200 (725)
Q Consensus       153 ---------------------------~vG~~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l  200 (725)
                                                 .|+..+     +.+.+.+|+.+++++|+++||||++-   .+ +.+.+.|.++
T Consensus       446 s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig---~~-~~Ai~~a~~l  521 (584)
T TIGR00705       446 SLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALG---GL-DEAVAKAAKL  521 (584)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCC---CH-HHHHHHHHHH
Confidence                                       677666     78899999999999999999999994   44 7777888888


Q ss_pred             Hhc
Q 004891          201 AAR  203 (725)
Q Consensus       201 a~~  203 (725)
                      +..
T Consensus       522 a~~  524 (584)
T TIGR00705       522 AHC  524 (584)
T ss_pred             cCC
Confidence            887

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>PRK06545 prephenate dehydrogenase; Validated

Probab=99.46  E-value=1.3e-12  Score=141.69  Aligned_cols=167  Identities=18%  Similarity=0.157  Sum_probs=118.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||+|.||++||..|.++|++|.+|+++++..+....         ...+..+           ..+++. +.+++
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a---------~~~~~~~-----------~~~~~~~~~~~~   60 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARA---------LGFGVID-----------ELAADLQRAAAE   60 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHH---------hcCCCCc-----------ccccCHHHHhcC
Confidence            47999999999999999999999999999998776443211         1112111           112333 45789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHH-hCCCCeEEEecCCCC--ChHHHhcccCCCCcEEEEecCCCC------------CC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPA------------HV  452 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~-~~~~~~ii~s~tS~~--~~~~l~~~~~~~~r~ig~h~~~p~------------~~  452 (725)
                      ||+||+|+|  ......+++++.+ .++++++|++.+|+.  .+..+........+|++.||+...            ..
T Consensus        61 aDlVilavP--~~~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~  138 (359)
T PRK06545         61 ADLIVLAVP--VDATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFE  138 (359)
T ss_pred             CCEEEEeCC--HHHHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHC
Confidence            999999999  5567899999987 478898887655542  233444444556789999986432            12


Q ss_pred             CCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc-CCcchhhhhh
Q 004891          453 MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG-NCTGFAVNRA  497 (725)
Q Consensus       453 ~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~-d~~Gfi~nRl  497 (725)
                      +...-+++++.++++.++.++++++.+|..++++. +....++..+
T Consensus       139 g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~v  184 (359)
T PRK06545        139 NAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVALV  184 (359)
T ss_pred             CCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhHh
Confidence            23355778888999999999999999999999884 3444444443

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.45  E-value=1.8e-13  Score=160.56  Aligned_cols=88  Identities=25%  Similarity=0.301  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHH
Q 004891          623 EIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLE  702 (725)
Q Consensus       623 ~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~  702 (725)
                      .|.||++.+++|||++++++|+  +++|||.+++ ++|||+   |||+++|.+|+|.+.++++.+.+.++++|.|+++++
T Consensus       494 fi~nRl~~~~~~EA~~lv~eGv--~~~dID~a~~-~~G~p~---GPf~~~D~~Gld~~~~i~~~l~~~~~~~~~~~~~l~  567 (708)
T PRK11154        494 FYVNRILAPYINEAARLLLEGE--PIEHIDAALV-KFGFPV---GPITLLDEVGIDVGTKIIPILEAALGERFSAPAAFD  567 (708)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHH-HcCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCCCCCHHHH
Confidence            5999999999999999999997  6999999998 899998   999999999999999999999999999999999999


Q ss_pred             HHH-------HcCCCCCCCCC
Q 004891          703 ERA-------TKGIPLSAPVS  716 (725)
Q Consensus       703 ~~~-------~~g~gf~~~~~  716 (725)
                      +|+       |+|+|||+|++
T Consensus       568 ~~v~~g~~G~k~g~GfY~y~~  588 (708)
T PRK11154        568 KLLNDDRKGRKNGRGFYLYGQ  588 (708)
T ss_pred             HHHHCCCCcccCCceEEECCC
Confidence            998       78999999964

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.44  E-value=5.1e-13  Score=134.15  Aligned_cols=155  Identities=27%  Similarity=0.308  Sum_probs=106.6

Q ss_pred             cEEEEEeC-----CCC-CCC-CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhH
Q 004891           14 GVAIITLI-----NPP-VNA-LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVS   86 (725)
Q Consensus        14 ~v~~i~l~-----~p~-~Na-l~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~   86 (725)
                      +|++|.++     +|. .|+ ++..++.+|.++|+.+++|+++++|||+.    +|.|+++....               
T Consensus         1 ~v~vi~~~g~i~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~----~s~gg~~~~~~---------------   61 (214)
T cd07022           1 GVAVIPVHGVLVPRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI----DSPGGEVAGVF---------------   61 (214)
T ss_pred             CEEEEEEEEEEeCCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE----eCCCCcHHHHH---------------
Confidence            35566554     332 354 45789999999999999999999999975    56666654321               


Q ss_pred             HHHHHHHHhhC--CCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccc------------cCCCCCc--------
Q 004891           87 VELVVNLIEDC--KKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPGF--------  144 (725)
Q Consensus        87 ~~~~~~~l~~~--~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~------------~Gl~p~~--------  144 (725)
                       .+. +.|..+  +|||||+++|.|.|+|+.|+++||+++|++++.|+...+.            +|+-+..        
T Consensus        62 -~l~-~~l~~~~~~KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~  139 (214)
T cd07022          62 -ELA-DAIRAARAGKPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKV  139 (214)
T ss_pred             -HHH-HHHHHHhcCCCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCcc
Confidence             122 334444  5999999999999999999999999999999988654332            2321110        


Q ss_pred             ------hhh----chH-----------------hhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHH
Q 004891          145 ------GGT----QRL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK  191 (725)
Q Consensus       145 ------g~~----~~l-----------------~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~  191 (725)
                            ..+    ..+                 .|-+......+++  |..+++++|++.||||++...+++..
T Consensus       140 ~~~~~~~~s~~~re~~~~~l~~~~~~f~~~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~~~~~~  211 (214)
T cd07022         140 DGNPDEPLSDEARARLQAEVDALYAMFVAAVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGTLDDALA  211 (214)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCCHHHHHH
Confidence                  000    001                 1222334444555  99999999999999999987666543

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=99.44  E-value=2.2e-13  Score=159.30  Aligned_cols=91  Identities=25%  Similarity=0.291  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHH
Q 004891          621 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRF  700 (725)
Q Consensus       621 ~~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~  700 (725)
                      .--|.||++.+++|||++++++|+  +++|||.+++ ++|||+   |||+++|.+|+|.++++++.+.+.++++|.|+++
T Consensus       487 pGfi~nRl~~~~~~Ea~~l~~~G~--~~~dID~a~~-~~G~p~---GPf~l~D~vGld~~~~i~~~l~~~~~~~~~~~~~  560 (699)
T TIGR02440       487 AGFYVNRILAPYMNEAARLLLEGE--PVEHIDKALV-KFGFPV---GPITLLDEVGIDVGAKISPILEAELGERFKAPAV  560 (699)
T ss_pred             cchHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHH-HcCCCc---CHHHHHHHhchHHHHHHHHHHHHhcCCCCCCcHH
Confidence            347999999999999999999995  7999999996 999999   9999999999999999999999999999999999


Q ss_pred             HHHHH-------HcCCCCCCCCCC
Q 004891          701 LEERA-------TKGIPLSAPVSS  717 (725)
Q Consensus       701 l~~~~-------~~g~gf~~~~~~  717 (725)
                      |++|+       |+|+|||+|++.
T Consensus       561 l~~~v~~G~lG~ksg~GfY~y~~~  584 (699)
T TIGR02440       561 FDKLLSDDRKGRKNGKGFYLYGAA  584 (699)
T ss_pred             HHHHHHCCCCcccCCcEEEeCCCC
Confidence            99998       789999999643

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=99.44  E-value=1.6e-12  Score=136.82  Aligned_cols=182  Identities=18%  Similarity=0.172  Sum_probs=122.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccCC
Q 004891          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV  388 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~a  388 (725)
                      ||+|||+|.||.+||.+|.++|++|++||+++. .+..           .+.|             .....+. +.+++|
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~-----------~~~g-------------~~~~~s~~~~~~~a   56 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADEL-----------LSLG-------------AVSVETARQVTEAS   56 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHH-----------HHcC-------------CeecCCHHHHHhcC
Confidence            799999999999999999999999999999864 2221           1122             1112233 567899


Q ss_pred             CEEEEeccCChHHHHHHHHH--HHHhCCCCeEEEecCCCCChH---HHhcccC-CCCcEEEEecCCCC----CCCCeeeE
Q 004891          389 DMVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDLN---IVGEKTS-SQDRIIGAHFFSPA----HVMPLLEI  458 (725)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~--l~~~~~~~~ii~s~tS~~~~~---~l~~~~~-~~~r~ig~h~~~p~----~~~~lvei  458 (725)
                      |+||.|||++..++..++..  +.+.+.++.+++.. ||..+.   ++++.+. +..+|+. +|+...    ..+.+.-+
T Consensus        57 dvVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~-sT~~p~~~~~~~~~~~~~G~~~vd-aPVsGg~~~a~~g~l~~~  134 (292)
T PRK15059         57 DIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDM-SSISPIETKRFARQVNELGGDYLD-APVSGGEIGAREGTLSIM  134 (292)
T ss_pred             CEEEEeCCChHHHHHHHcCCcchhccCCCCCEEEEC-CCCCHHHHHHHHHHHHHcCCCEEE-ecCCCCHHHHhcCcEEEE
Confidence            99999999887776666542  55667788887654 454444   3333332 3334555 233211    11222223


Q ss_pred             ecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcc-----hhhhhhhH----HHHHHHHHHHHc-CCCHHHHHHHH
Q 004891          459 VRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG-----FAVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI  522 (725)
Q Consensus       459 i~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G-----fi~nRl~~----a~~~Ea~~l~~~-Gv~~~dID~~~  522 (725)
                      +.|   +++++++++++++.+|+.++++++. |     .++|.++.    ..+.|++.+.+. |++++.+-.++
T Consensus       135 ~gG---~~~~~~~~~p~l~~~g~~~~~~G~~-G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l  204 (292)
T PRK15059        135 VGG---DEAVFERVKPLFELLGKNITLVGGN-GDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQAL  204 (292)
T ss_pred             EcC---CHHHHHHHHHHHHHHcCCcEEeCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            333   6899999999999999999999873 4     23455432    234689888766 89999977777

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=99.44  E-value=5.7e-13  Score=127.93  Aligned_cols=135  Identities=25%  Similarity=0.268  Sum_probs=105.8

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEEcc
Q 004891           28 LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEG  107 (725)
Q Consensus        28 l~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G  107 (725)
                      +++.++++|.+.|+.++.|+++++|+|..    .|.|+|+...                ..+. +.|..++||||+.++|
T Consensus         8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~----~s~Gg~~~~~----------------~~i~-~~l~~~~kpvva~~~g   66 (161)
T cd00394           8 IEDVSADQLAAQIRFAEADNSVKAIVLEV----NTPGGRVDAG----------------MNIV-DALQASRKPVIAYVGG   66 (161)
T ss_pred             EccchHHHHHHHHHHHHhCCCCceEEEEE----ECCCcCHHHH----------------HHHH-HHHHHhCCCEEEEECC
Confidence            56688999999999999999999999975    4667765432                2344 5677899999999999


Q ss_pred             cccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhh-------------chHh------hhhCHHHHHHHHHcCCC
Q 004891          108 LALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGT-------------QRLP------RLVGLSKAIEMMLLSKS  168 (725)
Q Consensus       108 ~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~-------------~~l~------r~vG~~~a~~l~l~g~~  168 (725)
                      .|.++|+.|+++||.|++.+++.|++..+..+.....+-.             ..+.      |.+......+++..|..
T Consensus        67 ~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~  146 (161)
T cd00394          67 QAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLV  146 (161)
T ss_pred             hhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcE
Confidence            9999999999999999999999999988876654321000             1111      22244456788889999


Q ss_pred             CCHHHHHHcCCccee
Q 004891          169 ITSEEGWKLGLIDAV  183 (725)
Q Consensus       169 ~~a~eA~~~Glv~~v  183 (725)
                      ++|+||++.||||++
T Consensus       147 ~~a~eA~~~GLvD~i  161 (161)
T cd00394         147 LTAQEALEYGLVDAL  161 (161)
T ss_pred             EcHHHHHHcCCcCcC
Confidence            999999999999975

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=99.44  E-value=1.7e-12  Score=144.00  Aligned_cols=192  Identities=13%  Similarity=0.085  Sum_probs=130.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cc---
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE---  384 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~---  384 (725)
                      .+|+|||+|.||++||.+|+++|++|++||+++++++...+..       ...|.           .+..++++ +.   
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~-----------~i~~~~s~~e~v~~   63 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKA-------KEGNT-----------RVKGYHTLEELVNS   63 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhh-------hhcCC-----------cceecCCHHHHHhc
Confidence            5799999999999999999999999999999999987754311       01121           12233444 22   


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCe------eeE
Q 004891          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPL------LEI  458 (725)
Q Consensus       385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~l------vei  458 (725)
                      ++++|+||.+||... ..+++++++.+.+.++.||++.+++.+...........+  .|+||+..|..+..      --+
T Consensus        64 l~~~d~Iil~v~~~~-~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~--~Gi~fldapVSGG~~gA~~G~~l  140 (470)
T PTZ00142         64 LKKPRKVILLIKAGE-AVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEE--KGILYLGMGVSGGEEGARYGPSL  140 (470)
T ss_pred             CCCCCEEEEEeCChH-HHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCeEEcCCCCCCHHHHhcCCEE
Confidence            346899999998554 445667889999999999987766655443322211111  16677654433311      124


Q ss_pred             ecCCCCCHHHHHHHHHHHHHcCCe------eEEEcC-Ccch----hhhhhhHH---HHHHHHHHHH--cCCCHHHHHHHH
Q 004891          459 VRTERTSAQVILDLMTVGKIIKKV------PVVVGN-CTGF----AVNRAFFP---YSQSARLLVS--LGVDVFRIDSAI  522 (725)
Q Consensus       459 i~~~~t~~e~~~~~~~l~~~lGk~------~v~v~d-~~Gf----i~nRl~~a---~~~Ea~~l~~--~Gv~~~dID~~~  522 (725)
                      +.|.  +++++++++++++.++.+      ..++++ ..|.    +.|-+.++   .+.|++.+++  .|++++++-.++
T Consensus       141 m~GG--~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~  218 (470)
T PTZ00142        141 MPGG--NKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVF  218 (470)
T ss_pred             EEeC--CHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Confidence            5544  699999999999999987      677775 2232    23445433   3459999986  489999998887


Q ss_pred             H
Q 004891          523 R  523 (725)
Q Consensus       523 ~  523 (725)
                      .
T Consensus       219 ~  219 (470)
T PTZ00142        219 N  219 (470)
T ss_pred             H
Confidence            4

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=99.44  E-value=2.2e-12  Score=133.41  Aligned_cols=156  Identities=17%  Similarity=0.210  Sum_probs=117.8

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChH--HHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccC--cc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE--YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--YS  383 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e--~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~--~~  383 (725)
                      +++|+|+|+|.||+++|..+.++|+.|.+++++..  .++.+           .+.|.++.           .+.+  .+
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a-----------~~lgv~d~-----------~~~~~~~~   60 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAA-----------LELGVIDE-----------LTVAGLAE   60 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHH-----------hhcCcccc-----------cccchhhh
Confidence            57899999999999999999999998866666544  33332           12332221           1122  35


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhcccCCCCcEEEEecCCCCC------CCCe
Q 004891          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAH------VMPL  455 (725)
Q Consensus       384 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~p~~------~~~l  455 (725)
                      .+.++|+||.|||  +....++++++.+.++++++|++.+|+..  +..+........+|+|.||...+.      ....
T Consensus        61 ~~~~aD~VivavP--i~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~  138 (279)
T COG0287          61 AAAEADLVIVAVP--IEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAV  138 (279)
T ss_pred             hcccCCEEEEecc--HHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCE
Confidence            6788999999999  99999999999999999999998777533  344444443322899999976662      2345


Q ss_pred             eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004891          456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVG  487 (725)
Q Consensus       456 veii~~~~t~~e~~~~~~~l~~~lGk~~v~v~  487 (725)
                      +-+++++.++.+.++.++++++.+|..++.+.
T Consensus       139 ~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~  170 (279)
T COG0287         139 VVLTPSEGTEKEWVEEVKRLWEALGARLVEMD  170 (279)
T ss_pred             EEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence            66778888899999999999999999998884

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=99.43  E-value=6.7e-12  Score=138.49  Aligned_cols=196  Identities=16%  Similarity=0.167  Sum_probs=127.5

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHH--------HHHHHHhhHHcCCCCHHHHHHhhcCccc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT--------IEANVRGLVTRGKLTQDKANNALKMLKG  378 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~--------i~~~l~~~~~~g~~~~~~~~~~~~~i~~  378 (725)
                      .++||+|||+|.||.++|..|+++|++|++||+++++++.....        +...+.+.++            .+++..
T Consensus         2 ~~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~------------~g~l~~   69 (415)
T PRK11064          2 SFETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVE------------GGYLRA   69 (415)
T ss_pred             CccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhh------------cCceee
Confidence            36899999999999999999999999999999999988763211        1111111111            133444


Q ss_pred             ccCcccccCCCEEEEeccCC--------hHHHHHHHHHHHHhCCCCeEEEecCCCCChH---HHhcccCC-------C--
Q 004891          379 VLDYSEFKDVDMVIEAVIES--------VPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSS-------Q--  438 (725)
Q Consensus       379 ~~~~~~l~~aDlVIeavpe~--------~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~-------~--  438 (725)
                      +++   +++||+||.|||.+        +.....+.+.+.++++++++|+.. ||.++.   .+...+..       +  
T Consensus        70 ~~~---~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~-STv~pgtt~~~~~~l~~~~~~~~~~~~  145 (415)
T PRK11064         70 TTT---PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILE-STSPVGATEQMAEWLAEARPDLTFPQQ  145 (415)
T ss_pred             ecc---cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEe-CCCCCCHHHHHHHHHHHhccCCccccc
Confidence            443   45899999999964        356667778899999999987643 333332   22221110       0  


Q ss_pred             ----CcEEEEecCCCCCCC--Cee-------eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-----Ccchhhhhhh--
Q 004891          439 ----DRIIGAHFFSPAHVM--PLL-------EIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-----CTGFAVNRAF--  498 (725)
Q Consensus       439 ----~r~ig~h~~~p~~~~--~lv-------eii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-----~~Gfi~nRl~--  498 (725)
                          ..|.-.  ++|-...  ..+       -++.|  .+++..+.++++++.+++.++++++     ...++.|-++  
T Consensus       146 ~g~~~~f~v~--~~PE~~~~G~~~~~~~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~  221 (415)
T PRK11064        146 AGEQADINIA--YCPERVLPGQVMVELIKNDRVIGG--MTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDV  221 (415)
T ss_pred             ccCCCCeEEE--ECCCccCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHH
Confidence                011111  2331111  111       34544  3789999999999999988777764     1123445432  


Q ss_pred             -HHHHHHHHHHHHc-CCCHHHHHHHH
Q 004891          499 -FPYSQSARLLVSL-GVDVFRIDSAI  522 (725)
Q Consensus       499 -~a~~~Ea~~l~~~-Gv~~~dID~~~  522 (725)
                       .+++||+..+.+. |+++.++-.++
T Consensus       222 ~ia~~nE~~~lae~~GiD~~~v~~~~  247 (415)
T PRK11064        222 NIAFANELSLICADQGINVWELIRLA  247 (415)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHh
Confidence             5788999888877 99999988887

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=99.43  E-value=3.9e-12  Score=134.62  Aligned_cols=187  Identities=9%  Similarity=0.029  Sum_probs=122.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccCC
Q 004891          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV  388 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~a  388 (725)
                      ||+|||+|.||.+||..|+++|++|++||+++++++...+           .+...          .....+. +.+.++
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~-----------~g~~~----------~~s~~~~~~~~~~~   60 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKE-----------DRTTG----------VANLRELSQRLSAP   60 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------cCCcc----------cCCHHHHHhhcCCC
Confidence            7999999999999999999999999999999998766532           12110          0000111 345679


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhcccC-CCCcEEEEecCCCCCC--CCeeeEecCCC
Q 004891          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPAHV--MPLLEIVRTER  463 (725)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~-~~~r~ig~h~~~p~~~--~~lveii~~~~  463 (725)
                      |+||.|+|.+  ..++++.++.+.++++.+|++.+++.+.+  .+...+. ...+|+..+....+..  ..+ -++.+. 
T Consensus        61 dvIi~~vp~~--~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~-~~~~gG-  136 (298)
T TIGR00872        61 RVVWVMVPHG--IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGY-CFMIGG-  136 (298)
T ss_pred             CEEEEEcCch--HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCC-eeeeCC-
Confidence            9999999965  66777889999999998888765554333  3223332 2223444332211110  012 233332 


Q ss_pred             CCHHHHHHHHHHHHHcCC---eeEEEcCC-cch----hhhhhhHHH---HHHHHHHHHc-C--CCHHHHHHHH
Q 004891          464 TSAQVILDLMTVGKIIKK---VPVVVGNC-TGF----AVNRAFFPY---SQSARLLVSL-G--VDVFRIDSAI  522 (725)
Q Consensus       464 t~~e~~~~~~~l~~~lGk---~~v~v~d~-~Gf----i~nRl~~a~---~~Ea~~l~~~-G--v~~~dID~~~  522 (725)
                       ++++++.++++++.++.   ..+++++. .|.    +.|-+....   +.|++.+++. |  ++++++-.++
T Consensus       137 -~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~  208 (298)
T TIGR00872       137 -DGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVW  208 (298)
T ss_pred             -CHHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence             68999999999999996   46778763 222    224443332   3488888876 4  5999999998

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK08655 prephenate dehydrogenase; Provisional

Probab=99.42  E-value=5.5e-12  Score=139.83  Aligned_cols=154  Identities=18%  Similarity=0.164  Sum_probs=118.6

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       309 ~kIaVIG-~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      +||+||| +|.||.++|..|.++|++|++||++++.......          +.|             +..+++. +.+.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~----------~~g-------------v~~~~~~~e~~~   57 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAK----------ELG-------------VEYANDNIDAAK   57 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHH----------HcC-------------CeeccCHHHHhc
Confidence            3799997 7999999999999999999999999877533211          111             1223333 5678


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhcccCCCCcEEEEecCC----CCCCCCeeeEec
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFS----PAHVMPLLEIVR  460 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~~~r~ig~h~~~----p~~~~~lveii~  460 (725)
                      +||+||.|+|  ......++.++.+.++++++|++.+|+  .+...+.+......+|++.||+.    |...+..+.+++
T Consensus        58 ~aDvVIlavp--~~~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p  135 (437)
T PRK08655         58 DADIVIISVP--INVTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTP  135 (437)
T ss_pred             cCCEEEEecC--HHHHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEec
Confidence            9999999999  566678889999999999999877764  34445555554456899999764    334556677888


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004891          461 TERTSAQVILDLMTVGKIIKKVPVVVG  487 (725)
Q Consensus       461 ~~~t~~e~~~~~~~l~~~lGk~~v~v~  487 (725)
                      ++.++++.++.+.+++..+|..++.+.
T Consensus       136 ~~~~~~~~~~~v~~ll~~~G~~v~~~~  162 (437)
T PRK08655        136 TEKRSNPWFDKVKNFLEKEGARVIVTS  162 (437)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence            888899999999999999999998874

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.41  E-value=2.6e-12  Score=136.04  Aligned_cols=182  Identities=17%  Similarity=0.117  Sum_probs=120.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc--
Q 004891          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK--  386 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~--  386 (725)
                      ||+|||+|.||.+||.+|+++|++|++||+++++.+...           +.|             .....+. +.++  
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g-------------~~~~~s~~~~~~~~   57 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAG-----------KLG-------------ITARHSLEELVSKL   57 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-----------HCC-------------CeecCCHHHHHHhC
Confidence            799999999999999999999999999999998766532           112             1222333 2333  


Q ss_pred             -CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhcccCCCCcEEEEecCCCCCCCCee------e
Q 004891          387 -DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHVMPLL------E  457 (725)
Q Consensus       387 -~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~~~~r~ig~h~~~p~~~~~lv------e  457 (725)
                       ++|+||.|+|.+..+ ..++..+.+.++++.+++..+++.+.+  ++.+.+...    |.+|.+.|..+...      -
T Consensus        58 ~~advVi~~vp~~~~~-~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~----g~~~vdapV~G~~~~a~~g~~  132 (299)
T PRK12490         58 EAPRTIWVMVPAGEVT-ESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAER----GIHYVDCGTSGGVWGLRNGYC  132 (299)
T ss_pred             CCCCEEEEEecCchHH-HHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHc----CCeEEeCCCCCCHHHHhcCCe
Confidence             379999999966444 455677877788888887544433322  333333221    34555433332211      1


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCC---eeEEEcCCcc-----hhhhhh-hH---HHHHHHHHHHHc-C--CCHHHHHHHH
Q 004891          458 IVRTERTSAQVILDLMTVGKIIKK---VPVVVGNCTG-----FAVNRA-FF---PYSQSARLLVSL-G--VDVFRIDSAI  522 (725)
Q Consensus       458 ii~~~~t~~e~~~~~~~l~~~lGk---~~v~v~d~~G-----fi~nRl-~~---a~~~Ea~~l~~~-G--v~~~dID~~~  522 (725)
                      ++.+.  +++++++++++++.+|.   ..+++++ +|     -++|++ ..   ..+.|++.+.++ |  ++++++-.++
T Consensus       133 ~~~gG--~~~~~~~~~~~l~~~~~~~~~~~~~G~-~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~  209 (299)
T PRK12490        133 LMVGG--DKEIYDRLEPVFKALAPEGPGYVHAGP-VGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLW  209 (299)
T ss_pred             EEecC--CHHHHHHHHHHHHHhcCcCCcEEEECC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHH
Confidence            33222  68999999999999997   6788876 34     233443 32   233599999986 7  8999988888


Q ss_pred             H
Q 004891          523 R  523 (725)
Q Consensus       523 ~  523 (725)
                      .
T Consensus       210 ~  210 (299)
T PRK12490        210 R  210 (299)
T ss_pred             c
Confidence            3

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=99.41  E-value=1.2e-11  Score=132.18  Aligned_cols=205  Identities=16%  Similarity=0.068  Sum_probs=135.5

Q ss_pred             cHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccCCCEEEEeccCC
Q 004891          320 GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIES  398 (725)
Q Consensus       320 G~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~aDlVIeavpe~  398 (725)
                      |.+||..|+++|++|++||++++.++...      ++...+.|             +..+++. +.+++||+||.|+|..
T Consensus        32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~------~~~l~~~G-------------i~~asd~~eaa~~ADvVIlaVP~~   92 (342)
T PRK12557         32 GSRMAIEFAEAGHDVVLAEPNRSILSEEL------WKKVEDAG-------------VKVVSDDAEAAKHGEIHILFTPFG   92 (342)
T ss_pred             HHHHHHHHHhCCCeEEEEECCHHHhhHHH------HHHHHHCC-------------CEEeCCHHHHHhCCCEEEEECCCc
Confidence            89999999999999999999988654311      11111222             3334444 6678999999999955


Q ss_pred             hHHHHHHHHHHHHhCCCCeEEEecCCCCChHHH----hcccCCCCcEEEEecCCCCCC----CCeeeEecCCC------C
Q 004891          399 VPLKQKIFSELEKACPPHCILATNTSTIDLNIV----GEKTSSQDRIIGAHFFSPAHV----MPLLEIVRTER------T  464 (725)
Q Consensus       399 ~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l----~~~~~~~~r~ig~h~~~p~~~----~~lveii~~~~------t  464 (725)
                      . ..+.++..+.+.++++++|++ +|+.+....    ...+..+.+.+|+||++|...    ...++++.+..      .
T Consensus        93 ~-~v~~Vl~~L~~~L~~g~IVId-~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~~  170 (342)
T PRK12557         93 K-KTVEIAKNILPHLPENAVICN-TCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTNGTELA  170 (342)
T ss_pred             H-HHHHHHHHHHhhCCCCCEEEE-ecCCCHHHHHHHHHHHhcccccccCeeecCCccccccccchheEEeCCCcccccCC
Confidence            4 466777889999999998874 555555433    234443445667887766543    22345665442      3


Q ss_pred             CHHHHHHHHHHHHHcCCeeEEEcCCcchh---hhhhhHHH----HHHHHHHHHc-CCCHHHHHHHH-HhcCCCccHHHHH
Q 004891          465 SAQVILDLMTVGKIIKKVPVVVGNCTGFA---VNRAFFPY----SQSARLLVSL-GVDVFRIDSAI-RSFGLPIGPFQLL  535 (725)
Q Consensus       465 ~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi---~nRl~~a~----~~Ea~~l~~~-Gv~~~dID~~~-~~~G~p~Gpf~~~  535 (725)
                      +++.+++++++++.+|+++++++...|-.   .|.++.+.    ..|++.+.+. |.+|.+.-.-+ ...  -.|--.++
T Consensus       171 ~~e~~e~v~~LL~a~G~~v~~~~~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~~--~~~~a~l~  248 (342)
T PRK12557        171 TEEQIEKCVELAESIGKEPYVVPADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQILMT--LQTMASLV  248 (342)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH--HHHHHHHH
Confidence            89999999999999999998887533333   24444333    2478887766 77777755444 211  13667777


Q ss_pred             HhhchHHHHHHH
Q 004891          536 DLAGYGVAAATS  547 (725)
Q Consensus       536 D~~Gld~~~~~~  547 (725)
                      -..|+|...+.+
T Consensus       249 ~~~~~~~~~~~~  260 (342)
T PRK12557        249 ETSGVDGLLKAL  260 (342)
T ss_pred             HHhChHHHHHhc
Confidence            778877766544

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=99.41  E-value=3.4e-12  Score=141.30  Aligned_cols=201  Identities=19%  Similarity=0.170  Sum_probs=130.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHH--hhcCcccccCc-cccc
Q 004891          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANN--ALKMLKGVLDY-SEFK  386 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~--~~~~i~~~~~~-~~l~  386 (725)
                      ||+|||+|.||.++|..|+++|++|++||+++++++...+...    ...+.+ +. +....  ..++++.++++ +.++
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~----~~~e~~-l~-~~~~~~~~~g~l~~~~~~~~~~~   75 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKS----PIYEPG-LD-ELLAKALAAGRLRATTDYEDAIR   75 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCC----CCCCCC-HH-HHHHHhhhcCCeEEECCHHHHHh
Confidence            7999999999999999999999999999999998776432100    000000 00 00000  11346666676 4689


Q ss_pred             CCCEEEEeccCChH--------HHHHHHHHHHHhCCCCeEEEecCCCCChH---HHhc-ccCC-------CCcEEEEecC
Q 004891          387 DVDMVIEAVIESVP--------LKQKIFSELEKACPPHCILATNTSTIDLN---IVGE-KTSS-------QDRIIGAHFF  447 (725)
Q Consensus       387 ~aDlVIeavpe~~~--------~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~-~~~~-------~~r~ig~h~~  447 (725)
                      +||+||.|||.+..        ....+.+.+.+.++++++|+. .||+++.   ++.. ....       ..-.+..+| 
T Consensus        76 ~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~-~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~P-  153 (411)
T TIGR03026        76 DADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVL-ESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNP-  153 (411)
T ss_pred             hCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEE-eCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECC-
Confidence            99999999997643        456667888888889988764 3454433   2321 1111       111234443 


Q ss_pred             CCCCCCCe---------eeEecCCCCCHHHHHHHHHHHHHcC-CeeEEEcCCc-----chhhhhh---hHHHHHHHHHHH
Q 004891          448 SPAHVMPL---------LEIVRTERTSAQVILDLMTVGKIIK-KVPVVVGNCT-----GFAVNRA---FFPYSQSARLLV  509 (725)
Q Consensus       448 ~p~~~~~l---------veii~~~~t~~e~~~~~~~l~~~lG-k~~v~v~d~~-----Gfi~nRl---~~a~~~Ea~~l~  509 (725)
                        ....+.         ..++.|  .+++..++++++++.++ +.++++++..     .++.|-+   ..+++||+..+.
T Consensus       154 --e~~~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la  229 (411)
T TIGR03026       154 --EFLREGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARIC  229 (411)
T ss_pred             --CcCCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              211111         134555  37999999999999998 5777776522     2344433   257889999888


Q ss_pred             Hc-CCCHHHHHHHH
Q 004891          510 SL-GVDVFRIDSAI  522 (725)
Q Consensus       510 ~~-Gv~~~dID~~~  522 (725)
                      +. |+++.++-.++
T Consensus       230 ~~~GiD~~~v~~~~  243 (411)
T TIGR03026       230 EALGIDVYEVIEAA  243 (411)
T ss_pred             HHhCCCHHHHHHHh
Confidence            77 99999998887

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.40  E-value=3.2e-12  Score=135.54  Aligned_cols=182  Identities=16%  Similarity=0.135  Sum_probs=122.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc--
Q 004891          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK--  386 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~--  386 (725)
                      ||+|||+|.||.+||.+|+++|++|++||+++++.+...           +.|             ....++. +.++  
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g-------------~~~~~~~~e~~~~~   57 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALA-----------EEG-------------ATGADSLEELVAKL   57 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH-----------HCC-------------CeecCCHHHHHhhc
Confidence            799999999999999999999999999999998876542           112             1222233 2233  


Q ss_pred             -CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhcccCCCCcEEEEecCCCCCCCCe------ee
Q 004891          387 -DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHVMPL------LE  457 (725)
Q Consensus       387 -~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~~~~r~ig~h~~~p~~~~~l------ve  457 (725)
                       ++|+||.|+|.+..+ .+++..+.+.++++.++++.+++.+..  .+.+.+...    |.+|.+.|..+..      ..
T Consensus        58 ~~~dvvi~~v~~~~~~-~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~----g~~~~dapvsG~~~~a~~g~~  132 (301)
T PRK09599         58 PAPRVVWLMVPAGEIT-DATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEK----GIHFVDVGTSGGVWGLERGYC  132 (301)
T ss_pred             CCCCEEEEEecCCcHH-HHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHc----CCEEEeCCCCcCHHHHhcCCe
Confidence             479999999965444 455677888888888887654444422  233333221    4555543333211      12


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCC----eeEEEcCCcc--h---hhh-hhhHHH---HHHHHHHHH---cCCCHHHHHHH
Q 004891          458 IVRTERTSAQVILDLMTVGKIIKK----VPVVVGNCTG--F---AVN-RAFFPY---SQSARLLVS---LGVDVFRIDSA  521 (725)
Q Consensus       458 ii~~~~t~~e~~~~~~~l~~~lGk----~~v~v~d~~G--f---i~n-Rl~~a~---~~Ea~~l~~---~Gv~~~dID~~  521 (725)
                      ++.|  .+++++++++++++.+++    ..+++++ .|  .   ++| -+....   +.|++.+.+   .|++++++-.+
T Consensus       133 ~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~~G~-~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~  209 (301)
T PRK09599        133 LMIG--GDKEAVERLEPIFKALAPRAEDGYLHAGP-VGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEV  209 (301)
T ss_pred             EEec--CCHHHHHHHHHHHHHHcccccCCeEeECC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            3333  269999999999999999    7888887 34  1   223 333332   348888886   47899999999


Q ss_pred             HH
Q 004891          522 IR  523 (725)
Q Consensus       522 ~~  523 (725)
                      +.
T Consensus       210 ~~  211 (301)
T PRK09599        210 WR  211 (301)
T ss_pred             Hh
Confidence            83

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.39  E-value=2e-12  Score=129.46  Aligned_cols=153  Identities=22%  Similarity=0.278  Sum_probs=109.8

Q ss_pred             EEEEEeCCCCCCCC---CHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHH
Q 004891           15 VAIITLINPPVNAL---AIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV   91 (725)
Q Consensus        15 v~~i~l~~p~~Nal---~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~   91 (725)
                      |++|.++.+    +   .+.++.+|.++|+.++.|+++++|||++    +|.|+|+....             ...+.+ 
T Consensus         2 v~vi~i~g~----i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~----~s~Gg~~~~~~-------------~i~~~i-   59 (208)
T cd07023           2 IAVIDIEGT----ISDGGGIGADSLIEQLRKAREDDSVKAVVLRI----NSPGGSVVASE-------------EIYREI-   59 (208)
T ss_pred             EEEEEEEEE----EcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEE----ECCCCCHHHHH-------------HHHHHH-
Confidence            567777654    3   3779999999999999999999999988    57899886531             122345 


Q ss_pred             HHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccc------------cCCCCCchh-------------
Q 004891           92 NLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPGFGG-------------  146 (725)
Q Consensus        92 ~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~------------~Gl~p~~g~-------------  146 (725)
                      +.+..++|||||+++|.|.|+|+.|+++||++++++.+.|+...+.            +|+-+..-.             
T Consensus        60 ~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~  139 (208)
T cd07023          60 RRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRP  139 (208)
T ss_pred             HHHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCC
Confidence            5578889999999999999999999999999999999988643222            333221110             


Q ss_pred             -----hchHhhh-----------------hCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHH
Q 004891          147 -----TQRLPRL-----------------VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL  190 (725)
Q Consensus       147 -----~~~l~r~-----------------vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~  190 (725)
                           ...+..+                 +..... +-++.|..+++++|++.||||++...++..
T Consensus       140 ~s~~~~e~~~~~l~~~~~~f~~~Va~~R~~~~~~~-~~~~~~~~~~a~~A~~~gLiD~i~~~~~~~  204 (208)
T cd07023         140 LTEEERAILQALVDDIYDQFVDVVAEGRGMSGERL-DKLADGRVWTGRQALELGLVDELGGLDDAI  204 (208)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH-HHhcCCcEEEHHHHHHcCCCcccCCHHHHH
Confidence                 0001111                 111222 335688999999999999999998655543

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.39  E-value=3.1e-11  Score=125.82  Aligned_cols=198  Identities=18%  Similarity=0.186  Sum_probs=135.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHH--------HHHHHHhhHHcCCCCHHHHHHhhcCccccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT--------IEANVRGLVTRGKLTQDKANNALKMLKGVL  380 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~--------i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~  380 (725)
                      .+|+|||+|.+|.++|..++++|++|+++|+|+.+++.....        +...+...+            ..++++.|+
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v------------~~g~lraTt   77 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAV------------ESGKLRATT   77 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHH------------hcCCceEec
Confidence            789999999999999999999999999999999998875322        011112222            235688899


Q ss_pred             CcccccCCCEEEEeccC--------ChHHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhcc-------cCCCCcEEE
Q 004891          381 DYSEFKDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEK-------TSSQDRIIG  443 (725)
Q Consensus       381 ~~~~l~~aDlVIeavpe--------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~-------~~~~~r~ig  443 (725)
                      +.+.++.||++|+|||.        |+.......+.|.++++++.+|+.-+++.|-+  ++...       +..+..|.-
T Consensus        78 d~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~l  157 (436)
T COG0677          78 DPEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYL  157 (436)
T ss_pred             ChhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeE
Confidence            99999999999999985        56677777888999999999887544444422  33221       222222322


Q ss_pred             EecCCCCCCCCe---ee------EecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCc-----chhhhh---hhHHHHHHHH
Q 004891          444 AHFFSPAHVMPL---LE------IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCT-----GFAVNR---AFFPYSQSAR  506 (725)
Q Consensus       444 ~h~~~p~~~~~l---ve------ii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~-----Gfi~nR---l~~a~~~Ea~  506 (725)
                      .|  .|-+.+|.   .|      ++.|  .+++..+.+..|++.+-+..+.+.+..     ...-|-   +-.+++||..
T Consensus       158 ay--sPERv~PG~~~~el~~~~kVIgG--~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNEla  233 (436)
T COG0677         158 AY--SPERVLPGNVLKELVNNPKVIGG--VTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELA  233 (436)
T ss_pred             ee--CccccCCCchhhhhhcCCceeec--CCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            22  44444332   23      3444  379999999999999877766665422     222242   2468999976


Q ss_pred             HHHHc-CCCHHHHHHHH
Q 004891          507 LLVSL-GVDVFRIDSAI  522 (725)
Q Consensus       507 ~l~~~-Gv~~~dID~~~  522 (725)
                      .+.++ |++..++-.+.
T Consensus       234 li~~~~GIdvwevIeaA  250 (436)
T COG0677         234 LICNAMGIDVWEVIEAA  250 (436)
T ss_pred             HHHHHhCCcHHHHHHHh
Confidence            66655 99887766655

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=99.39  E-value=1.1e-12  Score=153.91  Aligned_cols=102  Identities=21%  Similarity=0.196  Sum_probs=92.6

Q ss_pred             HHHHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcCC--CHHHHHHHH-HhcCCCc---cHHHHHHhhchHHHH
Q 004891          471 DLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQLLDLAGYGVAA  544 (725)
Q Consensus       471 ~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv--~~~dID~~~-~~~G~p~---Gpf~~~D~~Gld~~~  544 (725)
                      .+..++..+++.++.+.+.+|||+||++.+++||+++|+++|+  +++|||.++ .++|||+   |||+++|.+|+|.++
T Consensus       626 ~v~~~~~~~~k~p~~~~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~v~  705 (737)
T TIGR02441       626 DADEILAQYKLPPKAEVSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKLV  705 (737)
T ss_pred             HHHHHHHHhccCcccccCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHH
Confidence            3556667788877766789999999999999999999999997  999999999 8999996   999999999999999


Q ss_pred             HHHHHHHhhCCCCCCCcHHHHHHHHc-CC
Q 004891          545 ATSKEFDKAFPDRSFQSPLVDLLLKS-GR  572 (725)
Q Consensus       545 ~~~~~l~~~~~~~~~~~~~l~~~v~~-g~  572 (725)
                      +.++.+++.+++++.|++++++|+++ |+
T Consensus       706 ~~~~~l~~~~g~~~~p~~lL~~~~~~~g~  734 (737)
T TIGR02441       706 DKMEKYAAAYGVQFTPCQLLLDHAKSPGK  734 (737)
T ss_pred             HHHHHHHHHhCCCcCCCHHHHHHHHhcCC
Confidence            99999999999877799999999987 64

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=99.37  E-value=7.7e-12  Score=133.16  Aligned_cols=156  Identities=18%  Similarity=0.141  Sum_probs=113.9

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-c
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (725)
                      .++||+|||+|.||.++|..|.+.|+  +|++||++++.++.+.           +.|..           .....+. +
T Consensus         5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~-----------~~g~~-----------~~~~~~~~~   62 (307)
T PRK07502          5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR-----------ELGLG-----------DRVTTSAAE   62 (307)
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH-----------hCCCC-----------ceecCCHHH
Confidence            45799999999999999999999995  8999999998766542           12211           0112233 4


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH---HHhcccCCCCcEEEEecCCCCCC--------
Q 004891          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHV--------  452 (725)
Q Consensus       384 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~p~~~--------  452 (725)
                      .+++||+||+|+|  ......++.++.+.++++++|++.+| ....   .+........+|++.||+.+...        
T Consensus        63 ~~~~aDvViiavp--~~~~~~v~~~l~~~l~~~~iv~dvgs-~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~  139 (307)
T PRK07502         63 AVKGADLVILCVP--VGASGAVAAEIAPHLKPGAIVTDVGS-VKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFA  139 (307)
T ss_pred             HhcCCCEEEECCC--HHHHHHHHHHHHhhCCCCCEEEeCcc-chHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCH
Confidence            5789999999999  45567788888888889988865444 3322   33333334458999999865432        


Q ss_pred             ----CCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004891          453 ----MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG  487 (725)
Q Consensus       453 ----~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~  487 (725)
                          +..+.+++...++++.++.+.++++.+|..++++.
T Consensus       140 ~l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~  178 (307)
T PRK07502        140 ELFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEMD  178 (307)
T ss_pred             HHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence                12345667777889999999999999999998874

>PLN02256 arogenate dehydrogenase

Probab=99.36  E-value=9.2e-12  Score=131.18  Aligned_cols=153  Identities=11%  Similarity=0.026  Sum_probs=111.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc-
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF-  385 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l-  385 (725)
                      .+||+|||+|.||+++|..|.+.|++|++||+++.. +.+.           +.|             +...++. +.+ 
T Consensus        36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~-----------~~g-------------v~~~~~~~e~~~   90 (304)
T PLN02256         36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAA-----------ELG-------------VSFFRDPDDFCE   90 (304)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHH-----------HcC-------------CeeeCCHHHHhh
Confidence            468999999999999999999999999999998632 2111           111             1122333 233 


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHH-HHhCCCCeEEEecCCC--CChHHHhcccCCCCcEEEEecCCCCCCCC------ee
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSEL-EKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPAHVMP------LL  456 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l-~~~~~~~~ii~s~tS~--~~~~~l~~~~~~~~r~ig~h~~~p~~~~~------lv  456 (725)
                      .++|+||.|+|  .....+++.++ ...++++++|++.+|+  .++..+...+....+|++.||+.++....      .+
T Consensus        91 ~~aDvVilavp--~~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~  168 (304)
T PLN02256         91 EHPDVVLLCTS--ILSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPF  168 (304)
T ss_pred             CCCCEEEEecC--HHHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeE
Confidence            46999999999  56677888888 5668899999887773  44556666555455799999987775431      11


Q ss_pred             eEecC----CCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004891          457 EIVRT----ERTSAQVILDLMTVGKIIKKVPVVVG  487 (725)
Q Consensus       457 eii~~----~~t~~e~~~~~~~l~~~lGk~~v~v~  487 (725)
                      -+.+.    +.++++.++.++++++.+|..++.+.
T Consensus       169 ~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~  203 (304)
T PLN02256        169 VYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMS  203 (304)
T ss_pred             EEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence            11121    56788999999999999999999884

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.36  E-value=1.4e-12  Score=152.99  Aligned_cols=91  Identities=14%  Similarity=0.182  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCCC--CCCC
Q 004891          621 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF--FKPS  698 (725)
Q Consensus       621 ~~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~--~~p~  698 (725)
                      .--|.||++.++++||+.++++| + +++|||.+++.++|||+   |||+++|.+|+|.+.++++.+...++++  +.|+
T Consensus       495 pGfv~nRi~~~~~~ea~~lv~~G-a-~~e~ID~a~~~~~G~~~---GP~~~~D~~Gld~~~~~~~~~~~~~~~~~~~~~~  569 (715)
T PRK11730        495 PGFFVNRVLFPYFAGFSQLLRDG-A-DFRQIDKVMEKQFGWPM---GPAYLLDVVGIDTAHHAQAVMAEGFPDRMKKDYR  569 (715)
T ss_pred             CchhHHHHHHHHHHHHHHHHHcC-C-CHHHHHHHHHhhCCCcc---CHHHHHHhhchHHHHHHHHHHHHhcCCccccchh
Confidence            34799999999999999999999 6 89999999999999998   9999999999999999999999888774  3457


Q ss_pred             HHHHHHH-------HcCCCCCCCCC
Q 004891          699 RFLEERA-------TKGIPLSAPVS  716 (725)
Q Consensus       699 ~~l~~~~-------~~g~gf~~~~~  716 (725)
                      +++++|+       |+|+|||+|++
T Consensus       570 ~~l~~~v~~G~~G~k~g~GfY~y~~  594 (715)
T PRK11730        570 DAIDVLFEAKRFGQKNGKGFYRYEE  594 (715)
T ss_pred             HHHHHHHHCCCCccccCCEeEeccc
Confidence            8999998       78999999953

>PLN02858 fructose-bisphosphate aldolase

Probab=99.35  E-value=6.6e-12  Score=155.45  Aligned_cols=187  Identities=16%  Similarity=0.096  Sum_probs=132.1

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      -+||||||+|.||.+||.+|+++|++|++||+++++.+...           +.|             ....++. +.++
T Consensus         4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~-----------~~G-------------a~~~~s~~e~a~   59 (1378)
T PLN02858          4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFC-----------ELG-------------GHRCDSPAEAAK   59 (1378)
T ss_pred             CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HcC-------------CeecCCHHHHHh
Confidence            36899999999999999999999999999999998877643           222             1223344 6678


Q ss_pred             CCCEEEEeccCChHHHHHHH--HHHHHhCCCCeEEEecCCCCChH---HHhcccCCCCcEEE--EecCCCCCCC------
Q 004891          387 DVDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIG--AHFFSPAHVM------  453 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig--~h~~~p~~~~------  453 (725)
                      +||+||.|+|++..++..++  ..+.+.+.++.+++. +||+.+.   ++++.+...    |  .+|++.|..+      
T Consensus        60 ~advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd-~STi~p~~~~~la~~l~~~----g~~~~~lDaPVsGg~~~A~  134 (1378)
T PLN02858         60 DAAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILI-RSTILPLQLQKLEKKLTER----KEQIFLVDAYVSKGMSDLL  134 (1378)
T ss_pred             cCCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEE-CCCCCHHHHHHHHHHHHhc----CCceEEEEccCcCCHHHHh
Confidence            89999999998888776665  357777888888765 4555544   333333222    3  4555444333      


Q ss_pred             --CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEE-cCC-cc---hhhhhhhH----HHHHHHHHHHHc-CCCHHHHHHH
Q 004891          454 --PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV-GNC-TG---FAVNRAFF----PYSQSARLLVSL-GVDVFRIDSA  521 (725)
Q Consensus       454 --~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v-~d~-~G---fi~nRl~~----a~~~Ea~~l~~~-Gv~~~dID~~  521 (725)
                        .+.-++.|   +++++++++++++.+|+..+++ ++. .|   -++|+++.    ..+.|++.+.+. |++++.+-.+
T Consensus       135 ~G~L~imvGG---~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~v  211 (1378)
T PLN02858        135 NGKLMIIASG---RSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDI  211 (1378)
T ss_pred             cCCeEEEEcC---CHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence              33334445   5889999999999999988865 542 22   24455543    334599988866 9999999888


Q ss_pred             H-HhcC
Q 004891          522 I-RSFG  526 (725)
Q Consensus       522 ~-~~~G  526 (725)
                      + .+.|
T Consensus       212 l~~s~g  217 (1378)
T PLN02858        212 ISNAAG  217 (1378)
T ss_pred             HhcCCc
Confidence            8 5554

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.34  E-value=4.4e-12  Score=121.56  Aligned_cols=129  Identities=17%  Similarity=0.265  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEEccccc
Q 004891           31 PIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL  110 (725)
Q Consensus        31 ~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~  110 (725)
                      .....+.+.|+.++.+..+ .+.|.+.|+...+                      ...++ +.|..++||||+.++|.|.
T Consensus        15 ~~~~~~~~~l~~~~~~~~i-~l~inspGG~~~~----------------------~~~i~-~~i~~~~~pvi~~v~g~a~   70 (160)
T cd07016          15 VTAKEFKDALDALGDDSDI-TVRINSPGGDVFA----------------------GLAIY-NALKRHKGKVTVKIDGLAA   70 (160)
T ss_pred             cCHHHHHHHHHhccCCCCE-EEEEECCCCCHHH----------------------HHHHH-HHHHhcCCCEEEEEcchHH
Confidence            4677888888888877443 3444554432111                      12445 6688899999999999999


Q ss_pred             chhhHHhhhcCEEEeeCCceEeCcccccCCCCCch---------------hhchHhhhhC--HHHHHHHHHcCCCCCHHH
Q 004891          111 GGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFG---------------GTQRLPRLVG--LSKAIEMMLLSKSITSEE  173 (725)
Q Consensus       111 GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g---------------~~~~l~r~vG--~~~a~~l~l~g~~~~a~e  173 (725)
                      |+|+.++++||+|+++++++|+++....+..+...               ....+.+..|  .....+++.++..++|+|
T Consensus        71 s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~e  150 (160)
T cd07016          71 SAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQE  150 (160)
T ss_pred             hHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHH
Confidence            99999999999999999999999877766544322               1233777788  678888888888999999


Q ss_pred             HHHcCCccee
Q 004891          174 GWKLGLIDAV  183 (725)
Q Consensus       174 A~~~Glv~~v  183 (725)
                      |+++||||+|
T Consensus       151 A~~~GliD~v  160 (160)
T cd07016         151 AVELGFADEI  160 (160)
T ss_pred             HHHcCCCCcC
Confidence            9999999985

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=99.34  E-value=2.2e-12  Score=150.94  Aligned_cols=90  Identities=16%  Similarity=0.212  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCCCC--CCC
Q 004891          621 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFF--KPS  698 (725)
Q Consensus       621 ~~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~--~p~  698 (725)
                      .--|.||++.++++||+.++++| + ++++||.++..++|||+   |||+++|.+|+|..+++++.+.+.+++++  .|+
T Consensus       495 pGfi~NRl~~~~~~ea~~l~~eG-~-~~~~ID~a~~~~~G~p~---GPf~l~D~~Gld~~~~i~~~~~~~~~~~~~~~~~  569 (714)
T TIGR02437       495 PGFFVNRVLFPYFGGFSKLLRDG-A-DFVRIDKVMEKQFGWPM---GPAYLLDVVGIDTGHHAQAVMAEGFPDRMGKDGR  569 (714)
T ss_pred             ccchHHHHHHHHHHHHHHHHHCC-C-CHHHHHHHHHhcCCCcc---CHHHHHHhhhHHHHHHHHHHHHHhcCcccccchh
Confidence            34699999999999999999999 5 89999999999999998   99999999999999999999998887754  457


Q ss_pred             HHHHHHH-------HcCCCCCCCC
Q 004891          699 RFLEERA-------TKGIPLSAPV  715 (725)
Q Consensus       699 ~~l~~~~-------~~g~gf~~~~  715 (725)
                      +++++|+       |+|+|||+|+
T Consensus       570 ~~l~~~v~~G~lG~K~g~GfY~y~  593 (714)
T TIGR02437       570 DAIDALFEAKRLGQKNGKGFYAYE  593 (714)
T ss_pred             HHHHHHHHCCCCcccCCCEEEecc
Confidence            8999998       7899999995

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=99.33  E-value=1.3e-11  Score=137.23  Aligned_cols=188  Identities=15%  Similarity=0.126  Sum_probs=124.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc----ccc
Q 004891          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SEF  385 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~l  385 (725)
                      +|+|||+|.||.+||.+|+++|++|++||+++++++...+..        ..|.           .+....+.    +.+
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~--------~~g~-----------~~~~~~s~~e~v~~l   61 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEH--------AKGK-----------KIVGAYSIEEFVQSL   61 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhc--------cCCC-----------CceecCCHHHHHhhc
Confidence            489999999999999999999999999999999877653210        0010           01112222    234


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHH--hcccCCCCcEEEEecCCCCCCCCe------ee
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV--GEKTSSQDRIIGAHFFSPAHVMPL------LE  457 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l--~~~~~~~~r~ig~h~~~p~~~~~l------ve  457 (725)
                      +.+|+||.|||.+..+ .+++.++.+.++++.||++.+++.+....  .+.+..  +  |+||+..|..+..      .-
T Consensus        62 ~~~dvIil~v~~~~~v-~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~--~--gi~fvdapVsGG~~gA~~G~~  136 (467)
T TIGR00873        62 ERPRKIMLMVKAGAPV-DAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKA--K--GILFVGSGVSGGEEGARKGPS  136 (467)
T ss_pred             CCCCEEEEECCCcHHH-HHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHh--c--CCEEEcCCCCCCHHHHhcCCc
Confidence            6799999999965554 55778898999999998876665544322  222221  1  5566544433211      12


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCee------EEEcCC-cch----hhhhhhHHH---HHHHHHHHH--cCCCHHHHHHH
Q 004891          458 IVRTERTSAQVILDLMTVGKIIKKVP------VVVGNC-TGF----AVNRAFFPY---SQSARLLVS--LGVDVFRIDSA  521 (725)
Q Consensus       458 ii~~~~t~~e~~~~~~~l~~~lGk~~------v~v~d~-~Gf----i~nRl~~a~---~~Ea~~l~~--~Gv~~~dID~~  521 (725)
                      ++.|.  ++++++.++++++.++..+      .++++. .|.    +-|-+.+++   +.|++.++.  .|++++++-.+
T Consensus       137 im~GG--~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v  214 (467)
T TIGR00873       137 IMPGG--SAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEV  214 (467)
T ss_pred             CCCCC--CHHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            33333  7899999999999999863      677752 232    334454433   359998874  58999998888


Q ss_pred             HH
Q 004891          522 IR  523 (725)
Q Consensus       522 ~~  523 (725)
                      +.
T Consensus       215 ~~  216 (467)
T TIGR00873       215 FT  216 (467)
T ss_pred             HH
Confidence            74

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=99.33  E-value=1.1e-11  Score=135.23  Aligned_cols=193  Identities=17%  Similarity=0.209  Sum_probs=119.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHH----HHHHhhHHcCCCCHHHHHHhhcCcccccCc-cc
Q 004891          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE----ANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~----~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (725)
                      ||+|||+|.||.++|..++. |++|++||+++++++...+.+.    ..+++.+..          ...+++.+++. +.
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~----------~~~~l~~t~~~~~~   70 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQS----------DKIHFNATLDKNEA   70 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHh----------CCCcEEEecchhhh
Confidence            79999999999999988875 9999999999999888765321    111111111          11345445554 56


Q ss_pred             ccCCCEEEEeccCChH---------HHHHHHHHHHHhCCCCeEEEecCCCCChH---HHhcccCCCCcEEEEecCCCCCC
Q 004891          385 FKDVDMVIEAVIESVP---------LKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHV  452 (725)
Q Consensus       385 l~~aDlVIeavpe~~~---------~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~p~~~  452 (725)
                      +++||+||+|||++.+         ...++++.+.+ ++++++|+. .||.++.   ++...+.  +.  ++.| +|...
T Consensus        71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~-~STv~pgtt~~l~~~~~--~~--~v~~-~PE~l  143 (388)
T PRK15057         71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVI-KSTVPVGFTAAMHKKYR--TE--NIIF-SPEFL  143 (388)
T ss_pred             hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEE-eeecCCchHHHHHHHhh--cC--cEEE-Ccccc
Confidence            7999999999998743         33556677776 577887754 3444443   3332221  11  2222 34322


Q ss_pred             CCee---------eEecCCCCCHHHHHHHHHHHHH--cCCe-eEEEcC-----Ccchhhhhhh---HHHHHHHHHHHHc-
Q 004891          453 MPLL---------EIVRTERTSAQVILDLMTVGKI--IKKV-PVVVGN-----CTGFAVNRAF---FPYSQSARLLVSL-  511 (725)
Q Consensus       453 ~~lv---------eii~~~~t~~e~~~~~~~l~~~--lGk~-~v~v~d-----~~Gfi~nRl~---~a~~~Ea~~l~~~-  511 (725)
                      .+.-         -++.|.  +++..+.+.+++..  ++.. ++++.+     ...++.|-++   .+++||+..+.+. 
T Consensus       144 ~~G~a~~d~~~p~rvv~G~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~  221 (388)
T PRK15057        144 REGKALYDNLHPSRIVIGE--RSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESL  221 (388)
T ss_pred             cCCcccccccCCCEEEEEc--CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2211         133332  24556777777754  5543 334543     2234455443   5788999888876 


Q ss_pred             CCCHHHHHHHH
Q 004891          512 GVDVFRIDSAI  522 (725)
Q Consensus       512 Gv~~~dID~~~  522 (725)
                      |+++.++-.++
T Consensus       222 GiD~~eV~~a~  232 (388)
T PRK15057        222 GLNTRQIIEGV  232 (388)
T ss_pred             CcCHHHHHHHh
Confidence            99999988887

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=99.33  E-value=1.3e-11  Score=123.33  Aligned_cols=154  Identities=25%  Similarity=0.311  Sum_probs=108.4

Q ss_pred             EEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHH
Q 004891           15 VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI   94 (725)
Q Consensus        15 v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l   94 (725)
                      |++|+++.+    ++ ...++|.++|+.+.+|+++++|||+..    |.|+++...                .++. +.|
T Consensus         2 v~vi~i~g~----i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~----s~Gg~~~~~----------------~~l~-~~i   55 (207)
T TIGR00706         2 IAILPVSGA----IA-VSPEDFDKKIKRIKDDKSIKALLLRIN----SPGGTVVAS----------------EEIY-EKL   55 (207)
T ss_pred             EEEEEEEEE----Ee-cCHHHHHHHHHHHhhCCCccEEEEEec----CCCCCHHHH----------------HHHH-HHH
Confidence            566777654    21 235789999999999999999999974    777776532                2334 456


Q ss_pred             hhCC--CcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccc------------cCCCC------------Cc--hh
Q 004891           95 EDCK--KPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIP------------GF--GG  146 (725)
Q Consensus        95 ~~~~--kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~------------~Gl~p------------~~--g~  146 (725)
                      ..++  |||||.++|.|.|+|+.|+++||.++|++++.++...+.            +|+-+            ..  ..
T Consensus        56 ~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~  135 (207)
T TIGR00706        56 KKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTREL  135 (207)
T ss_pred             HHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCC
Confidence            6676  999999999999999999999999999999987653332            33321            00  00


Q ss_pred             h----chH-----------------hhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHH
Q 004891          147 T----QRL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRL  195 (725)
Q Consensus       147 ~----~~l-----------------~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~  195 (725)
                      +    ..+                 .|-+......+ ++.|+.+++++|++.||||++...+++.+...+
T Consensus       136 s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~-~~~~~~~~~~~A~~~gLvD~i~~~~~~~~~~~~  204 (207)
T TIGR00706       136 TPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKK-FADGRVFTGRQALKLRLVDKLGTEDDALKWLAE  204 (207)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH-HhcCCcccHHHHHHcCCCcccCCHHHHHHHHHH
Confidence            0    011                 12223333333 467899999999999999999987776655443

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.31  E-value=7e-11  Score=123.65  Aligned_cols=153  Identities=14%  Similarity=0.051  Sum_probs=120.3

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCC----CcEEEEeCChHH-HHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G----~~V~~~d~~~e~-~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (725)
                      |+||+|||+|.||.+++..|.++|    ++|++|+++++. ++....           .           ......+.+.
T Consensus         1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~-----------~-----------~~~~~~~~~~   58 (277)
T PRK06928          1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYD-----------K-----------YPTVELADNE   58 (277)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHH-----------H-----------cCCeEEeCCH
Confidence            468999999999999999999998    789999987543 222110           0           0112223333


Q ss_pred             -ccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEe-c
Q 004891          383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-R  460 (725)
Q Consensus       383 -~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii-~  460 (725)
                       +.+.++|+||.|+|  ++...+++.++.+.++++++|+|...++.+.++...++. .+++.+.|+.|...+..+..+ .
T Consensus        59 ~e~~~~aDvVilavp--p~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~g~t~~~~  135 (277)
T PRK06928         59 AEIFTKCDHSFICVP--PLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGVGTSLVAH  135 (277)
T ss_pred             HHHHhhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhhhcEEEec
Confidence             45789999999999  777778899998888888888899999999999887753 489999999998888777766 4


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEE
Q 004891          461 TERTSAQVILDLMTVGKIIKKVPVV  485 (725)
Q Consensus       461 ~~~t~~e~~~~~~~l~~~lGk~~v~  485 (725)
                      ++..+++..+.++.++..+|+...+
T Consensus       136 ~~~~~~~~~~~v~~l~~~~G~~~~v  160 (277)
T PRK06928        136 AETVNEANKSRLEETLSHFSHVMTI  160 (277)
T ss_pred             CCCCCHHHHHHHHHHHHhCCCEEEE
Confidence            6677899999999999999987754

>PLN02858 fructose-bisphosphate aldolase

Probab=99.30  E-value=2.7e-11  Score=150.13  Aligned_cols=190  Identities=18%  Similarity=0.179  Sum_probs=129.8

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      .+++|+|||+|.||.+||.+|+++|++|++||+++++++...           +.|             ....++. +.+
T Consensus       323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~G-------------a~~~~s~~e~~  378 (1378)
T PLN02858        323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFE-----------NAG-------------GLAGNSPAEVA  378 (1378)
T ss_pred             CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcC-------------CeecCCHHHHH
Confidence            358999999999999999999999999999999998876542           122             1112333 567


Q ss_pred             cCCCEEEEeccCChHHHHHHHH--HHHHhCCCCeEEEecCCCCChH---HHhcccCCCCcEEEEecCCCCCCC-------
Q 004891          386 KDVDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHVM-------  453 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~p~~~~-------  453 (725)
                      ++||+||.|||++.+++..++.  .+.+.+.++.+++. .||..+.   ++++.+...  -.|.+|.+.|..+       
T Consensus       379 ~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd-~STvsP~~~~~la~~l~~~--g~g~~~lDAPVsGg~~~A~~  455 (1378)
T PLN02858        379 KDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIVL-SSTVSPGFVIQLERRLENE--GRDIKLVDAPVSGGVKRAAM  455 (1378)
T ss_pred             hcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHhh--CCCcEEEEccCCCChhhhhc
Confidence            8999999999988777666653  36666788888765 4444444   333333220  1255665544222       


Q ss_pred             -CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcc-----hhhhhhh----HHHHHHHHHHHHc-CCCHHHHHHHH
Q 004891          454 -PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG-----FAVNRAF----FPYSQSARLLVSL-GVDVFRIDSAI  522 (725)
Q Consensus       454 -~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G-----fi~nRl~----~a~~~Ea~~l~~~-Gv~~~dID~~~  522 (725)
                       .+.-++.|   +++.+++++++++.+|+..+++...+|     -++|+++    .+.+.|++.+.+. |++++.+-.++
T Consensus       456 G~L~imvgG---~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl  532 (1378)
T PLN02858        456 GTLTIMASG---TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDII  532 (1378)
T ss_pred             CCceEEEEC---CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence             23333344   588999999999999998877543344     2445553    2445699888766 99999988877


Q ss_pred             -HhcC
Q 004891          523 -RSFG  526 (725)
Q Consensus       523 -~~~G  526 (725)
                       .+.|
T Consensus       533 ~~s~g  537 (1378)
T PLN02858        533 SNAGG  537 (1378)
T ss_pred             Hhhcc
Confidence             5544

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=99.30  E-value=2.7e-11  Score=133.64  Aligned_cols=200  Identities=17%  Similarity=0.123  Sum_probs=124.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  388 (725)
                      +||+|||+|.||.++|..|++ |++|++||+++++++...+....    ..+.   ..++... .+++.++++.+.+++|
T Consensus         7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~----~~e~---~~~~l~~-~g~l~~t~~~~~~~~a   77 (425)
T PRK15182          7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDV----NLET---TEEELRE-ARYLKFTSEIEKIKEC   77 (425)
T ss_pred             CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCC----CCCC---CHHHHHh-hCCeeEEeCHHHHcCC
Confidence            589999999999999999887 69999999999998875421100    0000   0111111 2456777777778999


Q ss_pred             CEEEEeccCCh--------HHHHHHHHHHHHhCCCCeEEEecCCCCChH---HHh-cccCC------CCcEEEEecCCCC
Q 004891          389 DMVIEAVIESV--------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVG-EKTSS------QDRIIGAHFFSPA  450 (725)
Q Consensus       389 DlVIeavpe~~--------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~-~~~~~------~~r~ig~h~~~p~  450 (725)
                      |++|.|||.+.        .......+.|.++++++.+|+.. ||.++.   ++. ..+..      ...|.-.|  +|.
T Consensus        78 dvvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~-STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~--~PE  154 (425)
T PRK15182         78 NFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYE-STVYPGCTEEECVPILARMSGMTFNQDFYVGY--SPE  154 (425)
T ss_pred             CEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEe-cCCCCcchHHHHHHHHHhccCCCcCCCeeEee--CCC
Confidence            99999999663        22233346788889988887643 443332   121 11111      11222221  222


Q ss_pred             CCCC---------eeeEecCCCCCHHHHHHHHHHHHHcC-CeeEEEcC-----Ccchhhhhhh---HHHHHHHHHHHHc-
Q 004891          451 HVMP---------LLEIVRTERTSAQVILDLMTVGKIIK-KVPVVVGN-----CTGFAVNRAF---FPYSQSARLLVSL-  511 (725)
Q Consensus       451 ~~~~---------lveii~~~~t~~e~~~~~~~l~~~lG-k~~v~v~d-----~~Gfi~nRl~---~a~~~Ea~~l~~~-  511 (725)
                      ...+         +--++.|.  +++..+.+..+++.+. ..++++.+     ...++.|-+.   .+++||+..+.+. 
T Consensus       155 ~v~~G~a~~~~~~~~riv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~  232 (425)
T PRK15182        155 RINPGDKKHRLTNIKKITSGS--TAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRL  232 (425)
T ss_pred             cCCCCcccccccCCCeEEECC--CHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2211         11245554  5788899999999986 34555543     2223344332   5788999888877 


Q ss_pred             CCCHHHHHHHH
Q 004891          512 GVDVFRIDSAI  522 (725)
Q Consensus       512 Gv~~~dID~~~  522 (725)
                      |+++.++-.++
T Consensus       233 GiD~~~v~~a~  243 (425)
T PRK15182        233 NIDTEAVLRAA  243 (425)
T ss_pred             CcCHHHHHHHh
Confidence            99999988887

>PRK07680 late competence protein ComER; Validated

Probab=99.28  E-value=9.3e-11  Score=122.69  Aligned_cols=182  Identities=12%  Similarity=0.072  Sum_probs=124.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC----cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cc
Q 004891          310 KVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~----~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (725)
                      ||+|||+|.||.+++..|.++|+    +|++||+++++.+...+.                      ...+..+.+. +.
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~----------------------~~g~~~~~~~~~~   59 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKER----------------------YPGIHVAKTIEEV   59 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHH----------------------cCCeEEECCHHHH
Confidence            69999999999999999999994    799999998876543210                      0012233343 45


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeee-EecCCC
Q 004891          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTER  463 (725)
Q Consensus       385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lve-ii~~~~  463 (725)
                      +.+||+||.|+|  .....++++++.++++++++|++.+++.++..+...+.  .+.+..+|..|........ ++.++.
T Consensus        60 ~~~aDiVilav~--p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~--~~~~r~~p~~~~~~~~G~t~~~~g~~  135 (273)
T PRK07680         60 ISQSDLIFICVK--PLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVP--CQVARIIPSITNRALSGASLFTFGSR  135 (273)
T ss_pred             HHhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCEEEECCChHHHHhhccEEEeeCCC
Confidence            789999999997  66677888989888888888888888888888877664  3456666654432222222 345666


Q ss_pred             CCHHHHHHHHHHHHHcCCeeEEEcCC------------cchhhhhhhHHHHHHHHHHHH-cCCCHHHHHHHH
Q 004891          464 TSAQVILDLMTVGKIIKKVPVVVGNC------------TGFAVNRAFFPYSQSARLLVS-LGVDVFRIDSAI  522 (725)
Q Consensus       464 t~~e~~~~~~~l~~~lGk~~v~v~d~------------~Gfi~nRl~~a~~~Ea~~l~~-~Gv~~~dID~~~  522 (725)
                      .+++..+.+.+++..+|. ++.+.+.            |.|+.| ++.++...+   ++ .|+++++...++
T Consensus       136 ~~~~~~~~~~~ll~~~G~-~~~i~e~~~~~~~~l~gs~pa~~~~-~~~al~~~~---~~~~Gl~~~~a~~~~  202 (273)
T PRK07680        136 CSEEDQQKLERLFSNIST-PLVIEEDITRVSSDIVSCGPAFFSY-LLQRFIDAA---VEETNISKEEATTLA  202 (273)
T ss_pred             CCHHHHHHHHHHHHcCCC-EEEEChHhcchhhhhccchHHHHHH-HHHHHHHHH---HHhcCCCHHHHHHHH
Confidence            788889999999999995 4555432            112222 122233322   34 588888876665

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=99.28  E-value=4.2e-11  Score=121.98  Aligned_cols=182  Identities=15%  Similarity=0.121  Sum_probs=141.1

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCC----CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G----~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (725)
                      ++||+|||+|+||.+|+..|.++|    .+|++.+++++..+...++                      ++... +++. 
T Consensus         1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~----------------------~g~~~-~~~~~   57 (266)
T COG0345           1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAE----------------------YGVVT-TTDNQ   57 (266)
T ss_pred             CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHH----------------------cCCcc-cCcHH
Confidence            368999999999999999999999    5899999999987643221                      12222 3333 


Q ss_pred             ccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEec-C
Q 004891          383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVR-T  461 (725)
Q Consensus       383 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~-~  461 (725)
                      +.+.++|+||.||.  +....+++.++.+ ..++.+|+|...+++++.+...+. ..+++...|+.|...+..+..+. +
T Consensus        58 ~~~~~advv~LavK--Pq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t~i~~~  133 (266)
T COG0345          58 EAVEEADVVFLAVK--PQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVTAISAN  133 (266)
T ss_pred             HHHhhCCEEEEEeC--hHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcceeeecC
Confidence            67788999999997  7888899999988 778999999999999999999988 77899999999998888777665 5


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEEc-----------CCcchhhhhhhHHHHHHHH--HHHHcCCCHHHHHHHH
Q 004891          462 ERTSAQVILDLMTVGKIIKKVPVVVG-----------NCTGFAVNRAFFPYSQSAR--LLVSLGVDVFRIDSAI  522 (725)
Q Consensus       462 ~~t~~e~~~~~~~l~~~lGk~~v~v~-----------d~~Gfi~nRl~~a~~~Ea~--~l~~~Gv~~~dID~~~  522 (725)
                      ...+++..+.+.++++.+|+...+-.           ..|.      +..++-|++  .-+..|++.++.-...
T Consensus       134 ~~~~~~~~~~v~~l~~~~G~v~~v~E~~~da~TaisGSgPA------yv~~~iEal~~agv~~Gl~~~~A~~l~  201 (266)
T COG0345         134 ANVSEEDKAFVEALLSAVGKVVEVEESLMDAVTALSGSGPA------YVFLFIEALADAGVRLGLPREEARELA  201 (266)
T ss_pred             ccCCHHHHHHHHHHHHhcCCeEEechHHhhHHHHHhcCCHH------HHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            77899999999999999998765531           1222      122334544  3445677777766554

>PRK08818 prephenate dehydrogenase; Provisional

Probab=99.28  E-value=3.7e-11  Score=128.94  Aligned_cols=137  Identities=13%  Similarity=0.113  Sum_probs=103.7

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHC-CCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          309 RKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~-G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      ++|+|||+ |.||+++|..|.+. |++|+++|++.+.                                   ..+. +.+
T Consensus         5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~-----------------------------------~~~~~~~v   49 (370)
T PRK08818          5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG-----------------------------------SLDPATLL   49 (370)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc-----------------------------------cCCHHHHh
Confidence            58999999 99999999999964 8999999985211                                   1111 457


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHh---CCCCeEEEecCCCCC--hHHHhcccCCCCcEEEEecCCCCCC-----CCe
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKA---CPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAHV-----MPL  455 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~---~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~p~~~-----~~l  455 (725)
                      ++||+||.|+|  +....++++++.++   ++++++|++.+|+..  +..+   .....+|+|.||+..+..     +..
T Consensus        50 ~~aDlVilavP--v~~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~~~~~~fVG~HPMaG~E~s~lf~g~~  124 (370)
T PRK08818         50 QRADVLIFSAP--IRHTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM---LASQAEVVGLHPMTAPPKSPTLKGRV  124 (370)
T ss_pred             cCCCEEEEeCC--HHHHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH---HhcCCCEEeeCCCCCCCCCcccCCCe
Confidence            89999999999  88888999999876   689999987777642  2222   233346999999876643     233


Q ss_pred             eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004891          456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVG  487 (725)
Q Consensus       456 veii~~~~t~~e~~~~~~~l~~~lGk~~v~v~  487 (725)
                      +-+++.  ..++.++.++++++.+|..++.+.
T Consensus       125 ~iltp~--~~~~~~~~v~~l~~~~Ga~v~~~~  154 (370)
T PRK08818        125 MVVCEA--RLQHWSPWVQSLCSALQAECVYAT  154 (370)
T ss_pred             EEEeCC--CchhHHHHHHHHHHHcCCEEEEcC
Confidence            344544  345568899999999999999884

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.27  E-value=1.3e-10  Score=122.33  Aligned_cols=186  Identities=14%  Similarity=0.061  Sum_probs=127.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  388 (725)
                      ++|+|||.|.||.++|..|..+|++|++++++.++.....          .+.|             +...+..+.+++|
T Consensus        18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A----------~~~G-------------~~~~s~~eaa~~A   74 (330)
T PRK05479         18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKA----------EADG-------------FEVLTVAEAAKWA   74 (330)
T ss_pred             CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHH----------HHCC-------------CeeCCHHHHHhcC
Confidence            6899999999999999999999999999888754422211          0112             1222222678899


Q ss_pred             CEEEEeccCChHHHHHHH-HHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCC-------CCCeeeEe-
Q 004891          389 DMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH-------VMPLLEIV-  459 (725)
Q Consensus       389 DlVIeavpe~~~~k~~v~-~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~-------~~~lveii-  459 (725)
                      |+|+.++|...  ...++ .++.+.++++++| +.++++.+...........+++-+.|..|.+       .+..+... 
T Consensus        75 DVVvLaVPd~~--~~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~  151 (330)
T PRK05479         75 DVIMILLPDEV--QAEVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLI  151 (330)
T ss_pred             CEEEEcCCHHH--HHHHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEE
Confidence            99999999443  36777 7799999999988 7788888887665555556788888988887       44443332 


Q ss_pred             -cCCCCCHHHHHHHHHHHHHcCCeeE-----EEcC-C-cchh-----hhhhhHHHHHHHHHHH-HcCCCHHHHHH
Q 004891          460 -RTERTSAQVILDLMTVGKIIKKVPV-----VVGN-C-TGFA-----VNRAFFPYSQSARLLV-SLGVDVFRIDS  520 (725)
Q Consensus       460 -~~~~t~~e~~~~~~~l~~~lGk~~v-----~v~d-~-~Gfi-----~nRl~~a~~~Ea~~l~-~~Gv~~~dID~  520 (725)
                       .+...+.++.+.+..++..+|.++.     ..++ . .-..     .---+..++..+...+ +.|++|+...-
T Consensus       152 av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay~  226 (330)
T PRK05479        152 AVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMAYF  226 (330)
T ss_pred             EecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence             3555678999999999999998865     2222 1 1111     1112234555555444 55888876443

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.27  E-value=8.8e-11  Score=123.11  Aligned_cols=198  Identities=18%  Similarity=0.259  Sum_probs=137.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHH----HHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-c
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT----IEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~----i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (725)
                      +||+|||.|..|...+.+|+..||+|+.+|+++++++...+.    .+..|+.+++++..+        +|+++|+|+ +
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~--------gRl~fTtd~~~   72 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLAS--------GRLRFTTDYEE   72 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhcccc--------CcEEEEcCHHH
Confidence            589999999999999999999999999999999999987654    244556666554332        579999999 5


Q ss_pred             cccCCCEEEEeccC--------ChHHHHHHHHHHHHhCCCCeEEEecCCCCChHH---HhcccC--CCCc-E-EEEe---
Q 004891          384 EFKDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDLNI---VGEKTS--SQDR-I-IGAH---  445 (725)
Q Consensus       384 ~l~~aDlVIeavpe--------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~---l~~~~~--~~~r-~-ig~h---  445 (725)
                      +++++|++|+|||.        |+.....+.++|.++++..++|+ +-||.|+..   +...+.  .+.+ | +.+.   
T Consensus        73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV-~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEF  151 (414)
T COG1004          73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV-IKSTVPVGTTEEVRAKIREENSGKDFEVASNPEF  151 (414)
T ss_pred             HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE-EcCCCCCCchHHHHHHHHhhcccCCceEecChHH
Confidence            78999999999975        55677788889999988877665 456666542   222111  1111 1 1111   


Q ss_pred             ---------cCCCCCCCCeeeEecCCCCCHHHHHHHHHHHHHc--CCeeEEEcC-----CcchhhhhhhH---HHHHHHH
Q 004891          446 ---------FFSPAHVMPLLEIVRTERTSAQVILDLMTVGKII--KKVPVVVGN-----CTGFAVNRAFF---PYSQSAR  506 (725)
Q Consensus       446 ---------~~~p~~~~~lveii~~~~t~~e~~~~~~~l~~~l--Gk~~v~v~d-----~~Gfi~nRl~~---a~~~Ea~  506 (725)
                               |++|..+     |+...  ++++.+.+.++++.+  ...|++..+     .-.+..|-++.   +++||..
T Consensus       152 LREG~Av~D~~~PdRI-----ViG~~--~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia  224 (414)
T COG1004         152 LREGSAVYDFLYPDRI-----VIGVR--SERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIA  224 (414)
T ss_pred             hcCcchhhhccCCCeE-----EEccC--ChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     2455443     34332  344667777777654  455666533     33466676663   7889988


Q ss_pred             HHHHc-CCCHHHHHHHH
Q 004891          507 LLVSL-GVDVFRIDSAI  522 (725)
Q Consensus       507 ~l~~~-Gv~~~dID~~~  522 (725)
                      .+.+. |++..+|-..+
T Consensus       225 ~ice~~g~D~~~V~~gI  241 (414)
T COG1004         225 NICEKVGADVKQVAEGI  241 (414)
T ss_pred             HHHHHhCCCHHHHHHHc
Confidence            77776 99999988876

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.23  E-value=2.4e-10  Score=118.60  Aligned_cols=179  Identities=11%  Similarity=0.103  Sum_probs=124.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCc---EEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          310 KVAVIGGGLMGSGIATAHILNNIY---VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~~---V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      ||+|||+|.||.+|+..|.++|+.   |.++|+++++.+...+.                      ......+++. +.+
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~----------------------~~~~~~~~~~~~~~   59 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAER----------------------FPKVRIAKDNQAVV   59 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHH----------------------cCCceEeCCHHHHH
Confidence            799999999999999999999864   57999998886554221                      0112223344 456


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCC
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS  465 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~  465 (725)
                      ++||+||+|+|  .+....++.++.  +.++.+|+|..++.++..+...+....+.+..||+.|......+..+.+.   
T Consensus        60 ~~aDvVilav~--p~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~---  132 (258)
T PRK06476         60 DRSDVVFLAVR--PQIAEEVLRALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPP---  132 (258)
T ss_pred             HhCCEEEEEeC--HHHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCC---
Confidence            88999999999  555677777762  46778888888899999998887665678888888777655444444332   


Q ss_pred             HHHHHHHHHHHHHcCCeeEEEcC--C------cchhhhhhhHHHHHHHHHHH-HcCCCHHHHHHHH
Q 004891          466 AQVILDLMTVGKIIKKVPVVVGN--C------TGFAVNRAFFPYSQSARLLV-SLGVDVFRIDSAI  522 (725)
Q Consensus       466 ~e~~~~~~~l~~~lGk~~v~v~d--~------~Gfi~nRl~~a~~~Ea~~l~-~~Gv~~~dID~~~  522 (725)
                         .+.++++++.+|..+++..+  .      .++..|  ++.++.++.... +.|+++++...++
T Consensus       133 ---~~~~~~l~~~lG~~~~~~~e~~~d~~~a~~s~~a~--~~~~~~~~~~~~~~~Gl~~~~a~~~~  193 (258)
T PRK06476        133 ---DPFVAALFDALGTAVECDSEEEYDLLAAASALMAT--YFGILETATGWLEEQGLKRQKARAYL  193 (258)
T ss_pred             ---HHHHHHHHHhcCCcEEECChHhccceeehhccHHH--HHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence               25789999999988775422  1      112222  223455555554 4589998877776

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=99.23  E-value=2.4e-10  Score=122.91  Aligned_cols=168  Identities=18%  Similarity=0.209  Sum_probs=105.0

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      |+||+|||+|.||+.+|..|+++|++|++||++++.++...+....   .....+ .      .....+..+++. +.++
T Consensus         1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~---~~~~~~-~------~~~~~~~~~~~~~~~~~   70 (325)
T PRK00094          1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADREN---PRYLPG-I------KLPDNLRATTDLAEALA   70 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcc---cccCCC-C------cCCCCeEEeCCHHHHHh
Confidence            3589999999999999999999999999999999887664321000   000000 0      000123344555 4678


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH-------HHhcccCCCCcEEEEecCCCCCC-----C-
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-------IVGEKTSSQDRIIGAHFFSPAHV-----M-  453 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~-------~l~~~~~~~~r~ig~h~~~p~~~-----~-  453 (725)
                      +||+||.|+|.  .....++.++.+.+++++++++.++++...       .+.+........  .....|...     . 
T Consensus        71 ~~D~vi~~v~~--~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~--~~~~~P~~~~~~~~g~  146 (325)
T PRK00094         71 DADLILVAVPS--QALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPI--AVLSGPSFAKEVARGL  146 (325)
T ss_pred             CCCEEEEeCCH--HHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCce--EEEECccHHHHHHcCC
Confidence            99999999994  567788889999888999888776555542       122222110011  111122211     1 


Q ss_pred             CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcc
Q 004891          454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG  491 (725)
Q Consensus       454 ~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G  491 (725)
                      +..-++.+  .+.+.++.+.++++..|..++...+..|
T Consensus       147 ~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~d~~g  182 (325)
T PRK00094        147 PTAVVIAS--TDEELAERVQELFHSPYFRVYTNTDVIG  182 (325)
T ss_pred             CcEEEEEe--CCHHHHHHHHHHhCCCCEEEEecCCcch
Confidence            11112222  2688999999999999987766655443

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=99.21  E-value=2.9e-10  Score=120.03  Aligned_cols=200  Identities=11%  Similarity=0.047  Sum_probs=137.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCC-hHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~-~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      +||+|||+|.||.++|..|..+|++|+++++. .++.+++.           +.|             +...+..+.+++
T Consensus         4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~-----------~~G-------------v~~~s~~ea~~~   59 (314)
T TIGR00465         4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKAT-----------EDG-------------FKVGTVEEAIPQ   59 (314)
T ss_pred             CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHH-----------HCC-------------CEECCHHHHHhc
Confidence            67999999999999999999999998876654 33433321           112             222233356789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCC-------CCeee-Ee
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHV-------MPLLE-IV  459 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~-------~~lve-ii  459 (725)
                      ||+|+.++|+.. ....+.+++.+.++++. ++|...++++..+....+...+++.+.|..|...       +..+. ++
T Consensus        60 ADiVvLaVpp~~-~~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~  137 (314)
T TIGR00465        60 ADLIMNLLPDEV-QHEVYEAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLI  137 (314)
T ss_pred             CCEEEEeCCcHh-HHHHHHHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEE
Confidence            999999999443 34566677888888887 4577888999888777665567999999999974       65553 43


Q ss_pred             -cCCCCCHHHHHHHHHHHHHcCCe-------eE--EEc-C----CcchhhhhhhHHHHH---HHHHHHHcCCCHHHHHHH
Q 004891          460 -RTERTSAQVILDLMTVGKIIKKV-------PV--VVG-N----CTGFAVNRAFFPYSQ---SARLLVSLGVDVFRIDSA  521 (725)
Q Consensus       460 -~~~~t~~e~~~~~~~l~~~lGk~-------~v--~v~-d----~~Gfi~nRl~~a~~~---Ea~~l~~~Gv~~~dID~~  521 (725)
                       .+...+.+..+.+..++..+|..       ..  .+. +    ..+.  .=-.-+|+.   |++  ++.|++++.-...
T Consensus       138 a~~~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l--~Gs~pa~v~~~~eal--v~~G~~~e~A~~~  213 (314)
T TIGR00465       138 AVEQDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVL--CGGLTALIKAGFDTL--VEAGYQPELAYFE  213 (314)
T ss_pred             EecCCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhH--HhHHHHHHHHHHHHH--HHcCCCHHHHHHH
Confidence             56667899999999999999988       31  111 1    1110  001112222   444  7889999887766


Q ss_pred             H-HhcCCCccHHHHHHhhchH
Q 004891          522 I-RSFGLPIGPFQLLDLAGYG  541 (725)
Q Consensus       522 ~-~~~G~p~Gpf~~~D~~Gld  541 (725)
                      . ..+   .|...++-..|+.
T Consensus       214 ~~~~~---~g~~~l~~e~g~~  231 (314)
T TIGR00465       214 TVHEL---KLIVDLIYEGGIT  231 (314)
T ss_pred             HHHHH---HHHHHHHHHhcHH
Confidence            5 333   4777777777764

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.20  E-value=5.5e-10  Score=115.05  Aligned_cols=188  Identities=13%  Similarity=0.127  Sum_probs=129.6

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCC---c-EEEEeCC-hHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNI---Y-VVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~---~-V~~~d~~-~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (725)
                      ..||+|||+|.||.+++..++++|.   + |++++++ +++++...+.          .+             +..+++.
T Consensus         4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------~~-------------~~~~~~~   60 (245)
T PRK07634          4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQAR----------YN-------------VSTTTDW   60 (245)
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHH----------cC-------------cEEeCCh
Confidence            4689999999999999999998873   3 7788874 5665443211          01             2223344


Q ss_pred             -ccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEe-c
Q 004891          383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-R  460 (725)
Q Consensus       383 -~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii-~  460 (725)
                       +.+.++|+||.|+|  .....++++++.+.++ +.+|+|.+.++++..+...+....+++.+||..|......+... .
T Consensus        61 ~~~~~~~DiViiavp--~~~~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~~  137 (245)
T PRK07634         61 KQHVTSVDTIVLAMP--PSAHEELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTM  137 (245)
T ss_pred             HHHHhcCCEEEEecC--HHHHHHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEee
Confidence             45788999999999  5666888888887765 56788999999999998887665678889997776555444333 4


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEEEcCCcchhhh-------hhhHHHHHHHHH-HHHcCCCHHHHHHHH
Q 004891          461 TERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVN-------RAFFPYSQSARL-LVSLGVDVFRIDSAI  522 (725)
Q Consensus       461 ~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~n-------Rl~~a~~~Ea~~-l~~~Gv~~~dID~~~  522 (725)
                      ....+++..+.+++++..+|..+.+ .+..-....       -+++.++..... .++.|+++++-.+++
T Consensus       138 ~~~~~~~~~~~v~~lf~~~G~~~~~-~e~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~  206 (245)
T PRK07634        138 GQSVNETHKETLQLILKGIGTSQLC-TEEEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLV  206 (245)
T ss_pred             CCCCCHHHHHHHHHHHHhCCCEEEE-CHHHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            5567899999999999999998864 332111111       122222222222 345588888877765

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=99.20  E-value=2.5e-12  Score=142.15  Aligned_cols=161  Identities=16%  Similarity=0.154  Sum_probs=120.1

Q ss_pred             ceEEEEcCCCCcHHHHH--HH----HHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc
Q 004891          309 RKVAVIGGGLMGSGIAT--AH----ILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~--~l----~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (725)
                      .||+|||+|.||.+.+.  .+    ...|++|++||++++.++.....+++.+...   + .        ..++..++|+
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~---~-~--------~~~I~~ttD~   68 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEEL---G-A--------PLKIEATTDR   68 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhc---C-C--------CeEEEEeCCH
Confidence            37999999999998665  23    4568899999999999888666554443321   1 1        1356778886


Q ss_pred             -ccccCCCEEEEecc----------CChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccC--CCCcEEEEecCCC
Q 004891          383 -SEFKDVDMVIEAVI----------ESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS--SQDRIIGAHFFSP  449 (725)
Q Consensus       383 -~~l~~aDlVIeavp----------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~--~~~r~ig~h~~~p  449 (725)
                       +++++||+||++++          |++.+|..+++++.+.+.+++++.+++|...+.+++..+.  .| +.+.+||.||
T Consensus        69 ~eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~~tNP  147 (423)
T cd05297          69 REALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLNYANP  147 (423)
T ss_pred             HHHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEEcCCh
Confidence             78899999999998          4588999999999999999999999999999999988776  36 8999999999


Q ss_pred             CCCC-----CeeeEecCCCCCHHHHHHHHHHHHHcCCee
Q 004891          450 AHVM-----PLLEIVRTERTSAQVILDLMTVGKIIKKVP  483 (725)
Q Consensus       450 ~~~~-----~lveii~~~~t~~e~~~~~~~l~~~lGk~~  483 (725)
                      +..+     +..+ ++.-++..........+.+.+|..+
T Consensus       148 v~i~t~~~~k~~~-~rviG~c~~~~~~~~~~a~~l~~~~  185 (423)
T cd05297         148 MAELTWALNRYTP-IKTVGLCHGVQGTAEQLAKLLGEPP  185 (423)
T ss_pred             HHHHHHHHHHhCC-CCEEEECCcHHHHHHHHHHHhCCCH
Confidence            9665     3332 1211122225556666777777643

linked to 3D####ucture

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.18  E-value=9.9e-11  Score=118.26  Aligned_cols=145  Identities=21%  Similarity=0.228  Sum_probs=106.8

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEEcc
Q 004891           28 LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEG  107 (725)
Q Consensus        28 l~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G  107 (725)
                      -+...+.+|.++|+++..|++|++|||+..++.| ++.+++++.                +.+ +.+...+|||||.++|
T Consensus        26 ~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el~----------------~~i-~~~~~~~kpVia~~~~   87 (222)
T cd07018          26 SSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEELR----------------QAL-ERFRASGKPVIAYADG   87 (222)
T ss_pred             cCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHHH----------------HHH-HHHHHhCCeEEEEeCC
Confidence            3567899999999999999999999999988877 777766652                334 4466789999999998


Q ss_pred             cccchhhHHhhhcCEEEeeCCceEeCcccc------------cCCCCC---------chhhc-----------hH-----
Q 004891          108 LALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPG---------FGGTQ-----------RL-----  150 (725)
Q Consensus       108 ~a~GgG~~lalacD~~ia~~~a~~~~pe~~------------~Gl~p~---------~g~~~-----------~l-----  150 (725)
                       |.++|+.|+++||.++|.+.+.|+...+.            +|+-+.         .+..+           .+     
T Consensus        88 -~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l~  166 (222)
T cd07018          88 -YSQGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLD  166 (222)
T ss_pred             -CCchhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHHH
Confidence             88999999999999999999999885432            222221         00000           00     


Q ss_pred             ------------hhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHH
Q 004891          151 ------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKV  192 (725)
Q Consensus       151 ------------~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~  192 (725)
                                  .|.+...... -+..|+.+++++|++.||||++...+++.+.
T Consensus       167 ~~~~~f~~~Va~~R~~~~~~~~-~~~~~~~~~~~~A~~~GLvD~i~~~~e~~~~  219 (222)
T cd07018         167 SLWDQYLADVAASRGLSPDALE-ALIDLGGDSAEEALEAGLVDGLAYRDELEAR  219 (222)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHH-HHHHcCCcHHHHHHHCCCCCcCCcHHHHHHH
Confidence                        1112222232 3445999999999999999999977777654

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=99.18  E-value=1e-09  Score=118.82  Aligned_cols=168  Identities=11%  Similarity=0.075  Sum_probs=105.9

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCC-CC---HHHHHHhhcCcccccCcc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LT---QDKANNALKMLKGVLDYS  383 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~-~~---~~~~~~~~~~i~~~~~~~  383 (725)
                      ++||+|||+|.||+.+|..|+++|++|++||+++. .+...           +.|. +.   ..+......++..+++.+
T Consensus         2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~   69 (341)
T PRK08229          2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELR-----------AHGLTLTDYRGRDVRVPPSAIAFSTDPA   69 (341)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHH-----------hcCceeecCCCcceecccceeEeccChh
Confidence            46899999999999999999999999999999643 22211           1111 00   000000112344455666


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH-HHhcccCCCCcEEEEecCCCCCCCCe-e-----
Q 004891          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRIIGAHFFSPAHVMPL-L-----  456 (725)
Q Consensus       384 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~-~l~~~~~~~~r~ig~h~~~p~~~~~l-v-----  456 (725)
                      .+.++|+||+|++..  ...++++++.+.++++++|++.++++... .+...+.....+.+.+++......|. +     
T Consensus        70 ~~~~~D~vil~vk~~--~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~  147 (341)
T PRK08229         70 ALATADLVLVTVKSA--ATADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTS  147 (341)
T ss_pred             hccCCCEEEEEecCc--chHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCC
Confidence            778999999999843  45678889999999999888877776643 45555443223344444321111110 0     


Q ss_pred             -eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcch
Q 004891          457 -EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF  492 (725)
Q Consensus       457 -eii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gf  492 (725)
                       ++.-+.   .+.++.+.++++..|....+.+|..+.
T Consensus       148 g~l~~~~---~~~~~~~~~~l~~~g~~~~~~~di~~~  181 (341)
T PRK08229        148 GALAIEA---SPALRPFAAAFARAGLPLVTHEDMRAV  181 (341)
T ss_pred             CceEecC---CchHHHHHHHHHhcCCCceecchhHHH
Confidence             111121   245688999999999888888875543

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=99.18  E-value=1.3e-09  Score=121.35  Aligned_cols=203  Identities=15%  Similarity=0.129  Sum_probs=129.7

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCC--CcEEEEeCChHHHHHHHHHH----HHHHHhhHHcCCCCHHHHHHhhcCcccccC
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G--~~V~~~d~~~e~~~~~~~~i----~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (725)
                      ++||+|||+|.+|..+|..|+++|  ++|+++|+++++++...+..    +..+++++.++         .-.++.++++
T Consensus         1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~---------~~~~l~~t~~   71 (473)
T PLN02353          1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQC---------RGKNLFFSTD   71 (473)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHh---------hcCCEEEEcC
Confidence            468999999999999999999984  78999999999988754321    11111111110         1134788888


Q ss_pred             c-ccccCCCEEEEeccCCh-------------HHHHHHHHHHHHhCCCCeEEEecCCCCChH---HHhcccCC---CCcE
Q 004891          382 Y-SEFKDVDMVIEAVIESV-------------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSS---QDRI  441 (725)
Q Consensus       382 ~-~~l~~aDlVIeavpe~~-------------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~---~~r~  441 (725)
                      + +++++||++|.|||.+.             .....+.++|.++++++++|+. .|+.++.   .+...+..   ...|
T Consensus        72 ~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~-~STvp~Gtt~~~~~~l~~~~~g~~f  150 (473)
T PLN02353         72 VEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVE-KSTVPVKTAEAIEKILTHNSKGINF  150 (473)
T ss_pred             HHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEE-eCCCCCChHHHHHHHHHhhCCCCCe
Confidence            7 56899999999996433             3667788889999999888764 3444433   22221111   1111


Q ss_pred             EEEecCCCCCCCCe---------eeE-ecCCC--CCHHHHHHHHHHHHHcCC-eeEEEc-----CCcchhhhhh---hHH
Q 004891          442 IGAHFFSPAHVMPL---------LEI-VRTER--TSAQVILDLMTVGKIIKK-VPVVVG-----NCTGFAVNRA---FFP  500 (725)
Q Consensus       442 ig~h~~~p~~~~~l---------vei-i~~~~--t~~e~~~~~~~l~~~lGk-~~v~v~-----d~~Gfi~nRl---~~a  500 (725)
                      --.  ++|-.+.+.         .-+ +.+..  +.+++.+.++++++.+-+ .++.+.     |...++.|-+   -.+
T Consensus       151 ~v~--~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Ia  228 (473)
T PLN02353        151 QIL--SNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRIS  228 (473)
T ss_pred             EEE--ECCCccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHH
Confidence            111  122221111         113 35432  126688999999998753 455543     3334566754   358


Q ss_pred             HHHHHHHHHHc-CCCHHHHHHHH
Q 004891          501 YSQSARLLVSL-GVDVFRIDSAI  522 (725)
Q Consensus       501 ~~~Ea~~l~~~-Gv~~~dID~~~  522 (725)
                      ++||...+.+. |+++.+|-.++
T Consensus       229 f~NEla~lce~~giD~~eV~~~~  251 (473)
T PLN02353        229 SVNAMSALCEATGADVSQVSHAV  251 (473)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHh
Confidence            99998777766 99999988888

>PLN02712 arogenate dehydrogenase

Probab=99.17  E-value=6.6e-10  Score=128.88  Aligned_cols=154  Identities=11%  Similarity=0.041  Sum_probs=108.6

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      ..+||+|||+|.||.++|..|.+.|++|++||++.+. +.+.           +.|             +...++. +.+
T Consensus       368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~-----------~~G-------------v~~~~~~~el~  422 (667)
T PLN02712        368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQ-----------KLG-------------VSYFSDADDLC  422 (667)
T ss_pred             CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHH-----------HcC-------------CeEeCCHHHHH
Confidence            3468999999999999999999999999999998543 2211           112             1123344 334


Q ss_pred             c-CCCEEEEeccCChHHHHHHHHHHHH-hCCCCeEEEecCCC--CChHHHhcccCCCCcEEEEecCCCCCCCC-----ee
Q 004891          386 K-DVDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPAHVMP-----LL  456 (725)
Q Consensus       386 ~-~aDlVIeavpe~~~~k~~v~~~l~~-~~~~~~ii~s~tS~--~~~~~l~~~~~~~~r~ig~h~~~p~~~~~-----lv  456 (725)
                      . +||+||.|+|  ......++.++.. .++++++|++.+|+  .++..+........+|++.||+.++....     ..
T Consensus       423 ~~~aDvVILavP--~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~  500 (667)
T PLN02712        423 EEHPEVILLCTS--ILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLA  500 (667)
T ss_pred             hcCCCEEEECCC--hHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhh
Confidence            3 5899999999  5677788888765 57889999887776  44555555555555799999987776531     11


Q ss_pred             -----eEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004891          457 -----EIVRTERTSAQVILDLMTVGKIIKKVPVVVG  487 (725)
Q Consensus       457 -----eii~~~~t~~e~~~~~~~l~~~lGk~~v~v~  487 (725)
                           -++.++....+.++.+.+++..+|..++.+.
T Consensus       501 ~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms  536 (667)
T PLN02712        501 FVFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMS  536 (667)
T ss_pred             hhccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeC
Confidence                 1123334455667777899999999998884

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=99.15  E-value=1.4e-09  Score=112.79  Aligned_cols=145  Identities=16%  Similarity=0.138  Sum_probs=111.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC----cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~----~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (725)
                      +||+|||+|+||++|+..|.++|.    +|+++|++++..                 +            .....++.+.
T Consensus         4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-----------------~------------~~~~~~~~~~   54 (260)
T PTZ00431          4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-----------------P------------FVYLQSNEEL   54 (260)
T ss_pred             CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-----------------C------------eEEeCChHHH
Confidence            479999999999999999999873    499999986541                 0            0111122245


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeee-EecCCC
Q 004891          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTER  463 (725)
Q Consensus       385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lve-ii~~~~  463 (725)
                      +.+||+||.|+|  +.....++.++.++++++ +|+|..+++..+.+...+....+++...|..|........ ++++..
T Consensus        55 ~~~~D~Vilavk--p~~~~~vl~~i~~~l~~~-~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~~  131 (260)
T PTZ00431         55 AKTCDIIVLAVK--PDLAGKVLLEIKPYLGSK-LLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANNN  131 (260)
T ss_pred             HHhCCEEEEEeC--HHHHHHHHHHHHhhccCC-EEEEEeCCccHHHHHHHcCCCCeEEEECCCchhHhcceeEEEEeCCC
Confidence            678999999998  888889999998877665 5568888999988888776555677788877776665544 446667


Q ss_pred             CCHHHHHHHHHHHHHcCCeeEE
Q 004891          464 TSAQVILDLMTVGKIIKKVPVV  485 (725)
Q Consensus       464 t~~e~~~~~~~l~~~lGk~~v~  485 (725)
                      ++++..+.++.+++.+|....+
T Consensus       132 ~~~~~~~~v~~l~~~~G~~~~v  153 (260)
T PTZ00431        132 VDSTDKKKVIDIFSACGIIQEI  153 (260)
T ss_pred             CCHHHHHHHHHHHHhCCcEEEE
Confidence            7899999999999999987755

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=99.13  E-value=7.3e-10  Score=132.14  Aligned_cols=156  Identities=17%  Similarity=0.188  Sum_probs=116.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCC--CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G--~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (725)
                      ++||+|||+|.||.++|..+.+.|  ++|++||+++++++.+.           +.|...           ...++. +.
T Consensus         3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~   60 (735)
T PRK14806          3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAV-----------SLGVID-----------RGEEDLAEA   60 (735)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHH-----------HCCCCC-----------cccCCHHHH
Confidence            588999999999999999999999  48999999998866542           122110           112233 45


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC--ChHHHhcccC-CCCcEEEEecCCCCC----------
Q 004891          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTS-SQDRIIGAHFFSPAH----------  451 (725)
Q Consensus       385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~-~~~r~ig~h~~~p~~----------  451 (725)
                      +++||+||+|+|  .+...++++++.+.++++++|++.+|+.  ....+.+.+. ...||++.||...+.          
T Consensus        61 ~~~aDvVilavp--~~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~  138 (735)
T PRK14806         61 VSGADVIVLAVP--VLAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANAD  138 (735)
T ss_pred             hcCCCEEEECCC--HHHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhH
Confidence            789999999999  5678899999999888888876544432  2445554443 356899999975222          


Q ss_pred             --CCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004891          452 --VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG  487 (725)
Q Consensus       452 --~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~  487 (725)
                        ..+.+.+++...++++..+.+.++++.+|..++++.
T Consensus       139 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~  176 (735)
T PRK14806        139 LFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHMD  176 (735)
T ss_pred             HhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence              233456788888899999999999999999988884

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.10  E-value=5.2e-10  Score=108.25  Aligned_cols=145  Identities=24%  Similarity=0.334  Sum_probs=101.0

Q ss_pred             EEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004891           16 AIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (725)
Q Consensus        16 ~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (725)
                      .+|+++.    .+++...+.|.++|+++++++ ++.|||.=.    |.|+++.                ....++ +.|.
T Consensus         2 ~vi~i~g----~I~~~~~~~l~~~l~~a~~~~-~~~ivl~in----spGG~v~----------------~~~~I~-~~l~   55 (178)
T cd07021           2 YVIPIEG----EIDPGLAAFVERALKEAKEEG-ADAVVLDID----TPGGRVD----------------SALEIV-DLIL   55 (178)
T ss_pred             EEEEEee----EECHHHHHHHHHHHHHHHhCC-CCeEEEEEE----CcCCCHH----------------HHHHHH-HHHH
Confidence            4566644    467788888999999999876 677777411    1122222                122445 6688


Q ss_pred             hCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhh--------ch------HhhhhC--HHHH
Q 004891           96 DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGT--------QR------LPRLVG--LSKA  159 (725)
Q Consensus        96 ~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~--------~~------l~r~vG--~~~a  159 (725)
                      .+++|||+.|+|.|.++|+.++++||+++|++++.|+.+.+-    +..++.        ..      +.+.-|  ...+
T Consensus        56 ~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v----~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~~~a  131 (178)
T cd07021          56 NSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPI----PGDGNGAADEKVQSYWRAKMRAAAEKKGRDPDIA  131 (178)
T ss_pred             hCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeE----cCCCccchhHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence            999999999999999999999999999999999999988443    333220        11      111122  3445


Q ss_pred             HHHHHcC-------------CCCCHHHHHHcCCcceecC-cchHH
Q 004891          160 IEMMLLS-------------KSITSEEGWKLGLIDAVVT-SEELL  190 (725)
Q Consensus       160 ~~l~l~g-------------~~~~a~eA~~~Glv~~vv~-~~~l~  190 (725)
                      ..|+-..             -.++++||++.|++|.+.+ .++|.
T Consensus       132 ~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~~~~ll  176 (178)
T cd07021         132 EAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSLDELL  176 (178)
T ss_pred             HHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECCHHHHh
Confidence            5555544             2799999999999999985 34443

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=99.10  E-value=1.5e-09  Score=109.71  Aligned_cols=163  Identities=16%  Similarity=0.114  Sum_probs=107.6

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG-~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      +||+||| +|.||+++|..|+++|++|+++++++++++........   .....+. .        ..+..+++.+.+++
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~---~~~~~g~-~--------~~~~~~~~~ea~~~   68 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALE---ELGHGGS-D--------IKVTGADNAEAAKR   68 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHh---hccccCC-C--------ceEEEeChHHHHhc
Confidence            3799997 89999999999999999999999999887664332111   0001110 0        01122233467889


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh-----------------HHHhcccCCCCcEEEEecCCCC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-----------------NIVGEKTSSQDRIIGAHFFSPA  450 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-----------------~~l~~~~~~~~r~ig~h~~~p~  450 (725)
                      +|+||.|+|  .....+++.++.+.++. ++|++.+.++..                 +.+++.+....+++....+.+.
T Consensus        69 aDvVilavp--~~~~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a  145 (219)
T TIGR01915        69 ADVVILAVP--WDHVLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSA  145 (219)
T ss_pred             CCEEEEECC--HHHHHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCH
Confidence            999999999  66667778888776654 777777776654                 2344444332567766443222


Q ss_pred             CC-------CCeeeEecCCCCCHHHHHHHHHHHHHc-CCeeEEEcC
Q 004891          451 HV-------MPLLEIVRTERTSAQVILDLMTVGKII-KKVPVVVGN  488 (725)
Q Consensus       451 ~~-------~~lveii~~~~t~~e~~~~~~~l~~~l-Gk~~v~v~d  488 (725)
                      ..       .+....+.|+  ++++.+.+..+.+.+ |..|+.++.
T Consensus       146 ~~~~~~~~~~~~~~~v~Gd--d~~ak~~v~~L~~~~~G~~~vd~G~  189 (219)
T TIGR01915       146 VLLQDVDDEVDCDVLVCGD--DEEAKEVVAELAGRIDGLRALDAGP  189 (219)
T ss_pred             HHhcCCCCCCCCCEEEECC--CHHHHHHHHHHHHhcCCCCcccCCc
Confidence            11       1122234554  577899999999999 999998764

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.06  E-value=9.3e-10  Score=118.36  Aligned_cols=166  Identities=14%  Similarity=0.099  Sum_probs=98.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      ++||+|||+|.||.+||..|+++|++|++|+++++..+...+...+.  ... .+.       ....++..++++ +.++
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~--~~~-~g~-------~~~~~~~~~~~~~e~~~   73 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENR--EYL-PGV-------ALPAELYPTADPEEALA   73 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCccc--ccC-CCC-------cCCCCeEEeCCHHHHHc
Confidence            35899999999999999999999999999999988766643211000  000 010       001123344555 5578


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC-----hHHHhcccCC--CCcEE-EEecCCCCCC---CCe
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID-----LNIVGEKTSS--QDRII-GAHFFSPAHV---MPL  455 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~-----~~~l~~~~~~--~~r~i-g~h~~~p~~~---~~l  455 (725)
                      +||+||+|+|...  .++++    +.+++++++++.++++.     ...+++.+..  ..++. ..-|..+...   .+.
T Consensus        74 ~aD~Vi~~v~~~~--~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~  147 (328)
T PRK14618         74 GADFAVVAVPSKA--LRETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPA  147 (328)
T ss_pred             CCCEEEEECchHH--HHHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCe
Confidence            9999999999552  23443    45667777776666544     2234333321  11111 1112111111   012


Q ss_pred             eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcc
Q 004891          456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG  491 (725)
Q Consensus       456 veii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G  491 (725)
                      +.++.+  .+++.++.++++++..|..+.+..|.-|
T Consensus       148 ~~~~~~--~~~~~~~~v~~ll~~~~~~v~~~~di~g  181 (328)
T PRK14618        148 ATVVAS--PEPGLARRVQAAFSGPSFRVYTSRDRVG  181 (328)
T ss_pred             EEEEEe--CCHHHHHHHHHHhCCCcEEEEecCCccc
Confidence            233333  2688999999999999987775444333

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=99.04  E-value=2.5e-09  Score=110.68  Aligned_cols=141  Identities=17%  Similarity=0.139  Sum_probs=101.6

Q ss_pred             HHHHHHHCC--CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCCCEEEEeccCChH
Q 004891          323 IATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVP  400 (725)
Q Consensus       323 iA~~l~~~G--~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVIeavpe~~~  400 (725)
                      ||..|.++|  ++|++||++++.++.+.           +.|.++           ...++.+.+++||+||.|+|  +.
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~~~~DlvvlavP--~~   56 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAAL-----------ELGIID-----------EASTDIEAVEDADLVVLAVP--VS   56 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHH-----------HTTSSS-----------EEESHHHHGGCCSEEEE-S---HH
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHH-----------HCCCee-----------eccCCHhHhcCCCEEEEcCC--HH
Confidence            688999999  69999999999877763           334322           01122467899999999999  88


Q ss_pred             HHHHHHHHHHHhCCCCeEEEecCCCC--ChHHHhcccCCCCcEEEEecCCCC------------CCCCeeeEecCCCCCH
Q 004891          401 LKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPA------------HVMPLLEIVRTERTSA  466 (725)
Q Consensus       401 ~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~~~~r~ig~h~~~p~------------~~~~lveii~~~~t~~  466 (725)
                      ....+++++.++++++++|++.+|+.  ++..+........+|+|.||...+            ..+..+-+++++.+++
T Consensus        57 ~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~  136 (258)
T PF02153_consen   57 AIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDP  136 (258)
T ss_dssp             HHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-H
T ss_pred             HHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChH
Confidence            89999999999999999998776653  334444555556789999997655            2345677888998999


Q ss_pred             HHHHHHHHHHHHcCCeeEEEc
Q 004891          467 QVILDLMTVGKIIKKVPVVVG  487 (725)
Q Consensus       467 e~~~~~~~l~~~lGk~~v~v~  487 (725)
                      +.++.+.++++.+|..++.+.
T Consensus       137 ~~~~~~~~l~~~~Ga~~~~~~  157 (258)
T PF02153_consen  137 EALELVEELWEALGARVVEMD  157 (258)
T ss_dssp             HHHHHHHHHHHHCT-EEEE--
T ss_pred             HHHHHHHHHHHHCCCEEEEcC
Confidence            999999999999999988873

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.03  E-value=4.8e-10  Score=116.27  Aligned_cols=109  Identities=22%  Similarity=0.256  Sum_probs=85.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      ++||+|||+|.||+++|..|+++|++|++|.++++.+++..+.  +...+++. +..       ....+..++|+ ++++
T Consensus         1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~--~~N~~yLp-~i~-------lp~~l~at~Dl~~a~~   70 (329)
T COG0240           1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINET--RENPKYLP-GIL-------LPPNLKATTDLAEALD   70 (329)
T ss_pred             CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhc--CcCccccC-Ccc-------CCcccccccCHHHHHh
Confidence            3689999999999999999999999999999999998875432  11111121 111       12356778888 6678


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL  428 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~  428 (725)
                      +||+|+.+||  .+..+++++++...+++++++++.+.++..
T Consensus        71 ~ad~iv~avP--s~~~r~v~~~l~~~l~~~~~iv~~sKGie~  110 (329)
T COG0240          71 GADIIVIAVP--SQALREVLRQLKPLLLKDAIIVSATKGLEP  110 (329)
T ss_pred             cCCEEEEECC--hHHHHHHHHHHhhhccCCCeEEEEeccccC
Confidence            8999999999  889999999998889999999887776554

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.03  E-value=4e-09  Score=112.34  Aligned_cols=140  Identities=16%  Similarity=0.203  Sum_probs=93.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      +||+|||+|.||.++|..|+++|++|++|++++..                                     ++ +.+++
T Consensus         5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~~-------------------------------------~~~~~~~~   47 (308)
T PRK14619          5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSGL-------------------------------------SLAAVLAD   47 (308)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCCC-------------------------------------CHHHHHhc
Confidence            57999999999999999999999999999998531                                     11 34578


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHh-CCCCeEEEecCCCCChHH------HhcccCCCCcEEEEecCCCCC------CCC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTIDLNI------VGEKTSSQDRIIGAHFFSPAH------VMP  454 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~-~~~~~ii~s~tS~~~~~~------l~~~~~~~~r~ig~h~~~p~~------~~~  454 (725)
                      +|+||.|+|.  ...+.++.++.++ +++++++++.++++.+..      .....-...+++.+  ..|..      ..+
T Consensus        48 advvi~~vp~--~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~i--~gp~~a~ei~~~~~  123 (308)
T PRK14619         48 ADVIVSAVSM--KGVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVVL--SGPNLSKEIQQGLP  123 (308)
T ss_pred             CCEEEEECCh--HHHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEEE--ECCCcHHHHhcCCC
Confidence            9999999995  4677788888764 678888887766454332      11111011122211  11211      111


Q ss_pred             eeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcc
Q 004891          455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG  491 (725)
Q Consensus       455 lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G  491 (725)
                      ..-++.+.  +.+..+.+++++...|..++..+|..|
T Consensus       124 ~~~~~ag~--~~~~~~~v~~ll~~~~~~~~~~~d~~G  158 (308)
T PRK14619        124 AATVVASR--DLAAAETVQQIFSSERFRVYTNSDPLG  158 (308)
T ss_pred             eEEEEEeC--CHHHHHHHHHHhCCCcEEEEecCCchh
Confidence            22233332  688999999999999988876666444

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=99.01  E-value=3.3e-08  Score=101.68  Aligned_cols=147  Identities=18%  Similarity=0.125  Sum_probs=96.3

Q ss_pred             cHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccCCCEEEEeccCC
Q 004891          320 GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIES  398 (725)
Q Consensus       320 G~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~aDlVIeavpe~  398 (725)
                      |.+||.+|+++||+|++||+++++++...      .+.+.+.|             ...+++. +++++||+||.|+|++
T Consensus        32 GspMArnLlkAGheV~V~Drnrsa~e~e~------~e~LaeaG-------------A~~AaS~aEAAa~ADVVIL~LPd~   92 (341)
T TIGR01724        32 GSRMAIEFAMAGHDVVLAEPNREFMSDDL------WKKVEDAG-------------VKVVSDDKEAAKHGEIHVLFTPFG   92 (341)
T ss_pred             HHHHHHHHHHCCCEEEEEeCChhhhhhhh------hHHHHHCC-------------CeecCCHHHHHhCCCEEEEecCCH
Confidence            88999999999999999999987654211      01112223             2223333 7789999999999966


Q ss_pred             hHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccC----CC---CcEEEEecCCCC-CCCCeeeEecC------CCC
Q 004891          399 VPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS----SQ---DRIIGAHFFSPA-HVMPLLEIVRT------ERT  464 (725)
Q Consensus       399 ~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~----~~---~r~ig~h~~~p~-~~~~lveii~~------~~t  464 (725)
                      ..+. +++..+.+.++++++|+. +||+++..+...+.    ..   -.+..+||-.-| ....-.-++.|      ...
T Consensus        93 aaV~-eVl~GLaa~L~~GaIVID-~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A  170 (341)
T TIGR01724        93 KGTF-SIARTIIEHVPENAVICN-TCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYVIGGKPTAGKEMA  170 (341)
T ss_pred             HHHH-HHHHHHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCceeeeccccccccccC
Confidence            5554 445778888999998864 56777665544332    12   234555653211 11111123322      224


Q ss_pred             CHHHHHHHHHHHHHcCCeeEEEc
Q 004891          465 SAQVILDLMTVGKIIKKVPVVVG  487 (725)
Q Consensus       465 ~~e~~~~~~~l~~~lGk~~v~v~  487 (725)
                      ++|.++++.++.+..|+.+.++.
T Consensus       171 ~ee~i~~~~el~~~~~~~~~~~p  193 (341)
T TIGR01724       171 TEEQISKCVELAKSTGKKAYVVP  193 (341)
T ss_pred             CHHHHHHHHHHHHHhCCCeeecc
Confidence            89999999999999999999873

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.99  E-value=1.4e-09  Score=106.36  Aligned_cols=108  Identities=20%  Similarity=0.239  Sum_probs=74.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHH--------HHHHHHhhHHcCCCCHHHHHHhhcCccccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT--------IEANVRGLVTRGKLTQDKANNALKMLKGVL  380 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~--------i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~  380 (725)
                      +||+|||+|.+|..+|..|+++|++|+++|+|++.++...+.        +...+.+...            -+++.+++
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~------------~~~l~~t~   68 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVS------------AGRLRATT   68 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHH------------TTSEEEES
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccc------------cccchhhh
Confidence            589999999999999999999999999999999988875432        1111111111            25778888


Q ss_pred             Cc-ccccCCCEEEEeccC--------ChHHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 004891          381 DY-SEFKDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDLN  429 (725)
Q Consensus       381 ~~-~~l~~aDlVIeavpe--------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~  429 (725)
                      +. +++++||++|.|||.        |......+.+.|.+.++++++|+- -||.++.
T Consensus        69 ~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~-~STvppG  125 (185)
T PF03721_consen   69 DIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVI-ESTVPPG  125 (185)
T ss_dssp             EHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEE-SSSSSTT
T ss_pred             hhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEE-ccEEEEe
Confidence            87 458999999999974        456677888999999999998764 4555544

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=98.99  E-value=3.7e-09  Score=117.16  Aligned_cols=179  Identities=13%  Similarity=0.072  Sum_probs=119.4

Q ss_pred             CcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcc-c---ccCCCEEEEe
Q 004891          319 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-E---FKDVDMVIEA  394 (725)
Q Consensus       319 mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~---l~~aDlVIea  394 (725)
                      ||..||.+|+++|++|++|||++++.+...+.          .+.         -..+....+++ .   ++.+|+||.|
T Consensus         1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~----------~g~---------~~g~~~~~s~~e~v~~l~~~~~Ii~m   61 (459)
T PRK09287          1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAE----------EGK---------GKKIVPAYTLEEFVASLEKPRKILLM   61 (459)
T ss_pred             CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHh----------hCC---------CCCeEeeCCHHHHHhhCCCCCEEEEE
Confidence            89999999999999999999999998765320          010         01133344442 2   3358999999


Q ss_pred             ccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHH--HhcccCCCCcEEEEecCCCCCCCCe------eeEecCCCCCH
Q 004891          395 VIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI--VGEKTSSQDRIIGAHFFSPAHVMPL------LEIVRTERTSA  466 (725)
Q Consensus       395 vpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~--l~~~~~~~~r~ig~h~~~p~~~~~l------veii~~~~t~~  466 (725)
                      ||.+..+. +++..+.+.+.++.||+..+++.+...  ..+.+..    .|+||+..|..+..      .-+++|.  ++
T Consensus        62 v~~g~~v~-~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~----~Gi~fvdapVSGG~~gA~~G~siM~GG--~~  134 (459)
T PRK09287         62 VKAGAPVD-AVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAE----KGIHFIGMGVSGGEEGALHGPSIMPGG--QK  134 (459)
T ss_pred             CCCchHHH-HHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh----cCCeEEecCCCCCHHHHhcCCEEEEeC--CH
Confidence            99776654 456888899999998886655444332  2222321    25666544433211      1344444  69


Q ss_pred             HHHHHHHHHHHHcCCee-------EEEcCC-cch----hhhhhhHHH---HHHHHHHHHc--CCCHHHHHHHHH
Q 004891          467 QVILDLMTVGKIIKKVP-------VVVGNC-TGF----AVNRAFFPY---SQSARLLVSL--GVDVFRIDSAIR  523 (725)
Q Consensus       467 e~~~~~~~l~~~lGk~~-------v~v~d~-~Gf----i~nRl~~a~---~~Ea~~l~~~--Gv~~~dID~~~~  523 (725)
                      ++++.++++++.++..+       .++++. .|.    +.|-+.+..   +.|++.+++.  |++++++-.++.
T Consensus       135 ~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~  208 (459)
T PRK09287        135 EAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFA  208 (459)
T ss_pred             HHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            99999999999999876       788763 222    334454433   4599988883  899999888874

>PLN02712 arogenate dehydrogenase

Probab=98.98  E-value=1e-08  Score=118.99  Aligned_cols=153  Identities=16%  Similarity=0.109  Sum_probs=104.6

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc-
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF-  385 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l-  385 (725)
                      .+||+|||+|.||.++|..|.+.|++|++||++... +.+.           +.|             +...++. +.+ 
T Consensus        52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~-----------~~G-------------v~~~~d~~e~~~  106 (667)
T PLN02712         52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAAR-----------SLG-------------VSFFLDPHDLCE  106 (667)
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHH-----------HcC-------------CEEeCCHHHHhh
Confidence            358999999999999999999999999999998543 2211           111             1223344 323 


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHH-HhCCCCeEEEecCCCCC--hHHHhcccCCCCcEEEEecCCCCCCC-----Ceee
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELE-KACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAHVM-----PLLE  457 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~-~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~p~~~~-----~lve  457 (725)
                      .+||+||.|+|  ......++.++. +.++++++|++.+|...  ...+...+.....|++.||+..+...     ....
T Consensus       107 ~~aDvViLavP--~~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~  184 (667)
T PLN02712        107 RHPDVILLCTS--IISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRF  184 (667)
T ss_pred             cCCCEEEEcCC--HHHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcE
Confidence            56999999999  667788888875 56788998887665432  23344444444469999997655411     1112


Q ss_pred             Eec-----CCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004891          458 IVR-----TERTSAQVILDLMTVGKIIKKVPVVVG  487 (725)
Q Consensus       458 ii~-----~~~t~~e~~~~~~~l~~~lGk~~v~v~  487 (725)
                      +..     .+....+.++.+.++++.+|..++.+.
T Consensus       185 ~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms  219 (667)
T PLN02712        185 VYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEMS  219 (667)
T ss_pred             EEeeccCCCccccHHHHHHHHHHHHHcCCEEEEeC
Confidence            222     222234567788899999999999884

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.97  E-value=3.9e-10  Score=107.66  Aligned_cols=105  Identities=23%  Similarity=0.221  Sum_probs=77.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccCC
Q 004891          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV  388 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~a  388 (725)
                      ||+|||+|.||.++|..|+++|++|++|.++++.++...+.-       .....+..   ......+..++|+ ++++++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~-------~n~~~~~~---~~l~~~i~~t~dl~~a~~~a   70 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETR-------QNPKYLPG---IKLPENIKATTDLEEALEDA   70 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHT-------SETTTSTT---SBEETTEEEESSHHHHHTT-
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhC-------CCCCCCCC---cccCcccccccCHHHHhCcc
Confidence            799999999999999999999999999999998777654310       00000110   0112356677887 678999


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC
Q 004891          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI  426 (725)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~  426 (725)
                      |+||.++|  ....+.+++++.+++++++++++.+.++
T Consensus        71 d~IiiavP--s~~~~~~~~~l~~~l~~~~~ii~~~KG~  106 (157)
T PF01210_consen   71 DIIIIAVP--SQAHREVLEQLAPYLKKGQIIISATKGF  106 (157)
T ss_dssp             SEEEE-S---GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred             cEEEeccc--HHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence            99999999  7778899999999999999998888776

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=98.96  E-value=1.2e-09  Score=116.12  Aligned_cols=125  Identities=20%  Similarity=0.324  Sum_probs=92.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      +||+|||+|.||.++|..++..|+ +|+++|++++.+..-      .++.....      .......++..+++++++++
T Consensus         7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~------~ld~~~~~------~~~~~~~~I~~~~d~~~l~~   74 (321)
T PTZ00082          7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGK------ALDISHSN------VIAGSNSKVIGTNNYEDIAG   74 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHH------HHHHHhhh------hccCCCeEEEECCCHHHhCC
Confidence            699999999999999999999996 999999999874321      11111110      00111235666678899999


Q ss_pred             CCEEEEec-------------------cCChHHHHHHHHHHHHhCCCC-eEEEecCCCCChHHHhcccCCC-CcEEEEe
Q 004891          388 VDMVIEAV-------------------IESVPLKQKIFSELEKACPPH-CILATNTSTIDLNIVGEKTSSQ-DRIIGAH  445 (725)
Q Consensus       388 aDlVIeav-------------------pe~~~~k~~v~~~l~~~~~~~-~ii~s~tS~~~~~~l~~~~~~~-~r~ig~h  445 (725)
                      ||+||+++                   +++..+++++++++.+++++. .|++||.+.+....+......| .|++|++
T Consensus        75 aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg  153 (321)
T PTZ00082         75 SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA  153 (321)
T ss_pred             CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence            99999955                   567788999999999999664 4556888877777777666654 7888875

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=98.95  E-value=1.8e-08  Score=97.87  Aligned_cols=154  Identities=18%  Similarity=0.151  Sum_probs=104.6

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChH-HHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e-~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      |++++|+|.|.||+++|..|+++||+|++-.++.+ +.+.+.+.+                     ...++..++.++++
T Consensus         1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l---------------------~~~i~~~~~~dA~~   59 (211)
T COG2085           1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAAL---------------------GPLITGGSNEDAAA   59 (211)
T ss_pred             CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhh---------------------ccccccCChHHHHh
Confidence            57899999999999999999999999999966554 443332211                     12345555667889


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC----------------hHH-HhcccCCCCcEEE-Eec--
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID----------------LNI-VGEKTSSQDRIIG-AHF--  446 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~----------------~~~-l~~~~~~~~r~ig-~h~--  446 (725)
                      .||+||.+||  ......+.+++...+. +.||++.|..+.                .++ +++.++.. +++. .|-  
T Consensus        60 ~aDVVvLAVP--~~a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkAFn~i~  135 (211)
T COG2085          60 LADVVVLAVP--FEAIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKAFNTIP  135 (211)
T ss_pred             cCCEEEEecc--HHHHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhhhcccC
Confidence            9999999999  7778888899888766 788887665421                111 12222222 3322 111  


Q ss_pred             ----CCCCCC-CCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004891          447 ----FSPAHV-MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN  488 (725)
Q Consensus       447 ----~~p~~~-~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  488 (725)
                          -+-+.. .+..-.++|.  +.++.+.+.++.+.+|..|+-++.
T Consensus       136 a~~l~~~~~~~~~~~v~vagD--D~~Ak~~v~~L~~~iG~~~ld~G~  180 (211)
T COG2085         136 AAVLADLAKPGGRRDVLVAGD--DAEAKAVVAELAEDIGFRPLDAGP  180 (211)
T ss_pred             HHHhccCCCcCCceeEEEecC--cHHHHHHHHHHHHhcCcceeeccc
Confidence                111111 3344455665  788999999999999999998864

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=98.92  E-value=1.7e-09  Score=114.76  Aligned_cols=121  Identities=19%  Similarity=0.317  Sum_probs=87.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHH-HHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891          311 VAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK-TIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (725)
Q Consensus       311 IaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~-~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  388 (725)
                      |+|||+|.||.++|..++..|+ +|+++|++++.++ +.. .+...            ........+++.+++++++++|
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~-g~~~dl~~~------------~~~~~~~~~I~~t~d~~~l~dA   67 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQ-GKALDISQA------------APILGSDTKVTGTNDYEDIAGS   67 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHH-HHHHHHHHh------------hhhcCCCeEEEEcCCHHHhCCC
Confidence            6899999999999999999887 9999999987543 221 11110            0011112356666778889999


Q ss_pred             CEEEEec--------------cCChHHHHHHHHHHHHhCCCCeE-EEecCCCCChHHHhcccCC-CCcEEEE
Q 004891          389 DMVIEAV--------------IESVPLKQKIFSELEKACPPHCI-LATNTSTIDLNIVGEKTSS-QDRIIGA  444 (725)
Q Consensus       389 DlVIeav--------------pe~~~~k~~v~~~l~~~~~~~~i-i~s~tS~~~~~~l~~~~~~-~~r~ig~  444 (725)
                      |+||+++              +++..+++++++++.++++++.+ ++||.+.+....+...... +.|++|+
T Consensus        68 DiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGl  139 (300)
T cd01339          68 DVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGM  139 (300)
T ss_pred             CEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEe
Confidence            9999977              67889999999999999977774 4577776666566555543 4577775

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.91  E-value=8.5e-10  Score=116.65  Aligned_cols=96  Identities=13%  Similarity=0.127  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHH-HHHHHHHHHHHhCC---CCC
Q 004891          621 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANY-VYTSLKKWSQLYGN---FFK  696 (725)
Q Consensus       621 ~~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~-~~~~~~~~~~~~~~---~~~  696 (725)
                      .-.|.||++.++++||++++++|++ |++|||.+|+.|+|+|...-|||+++|.+|+|. +.+.++++.+.+..   .+.
T Consensus       187 pGFi~NRl~~a~~~EA~~lv~eGva-s~edID~a~~~g~g~r~~~~Gpf~~~Dl~Gld~g~~~~~~~~g~~~~~~~~~~~  265 (321)
T PRK07066        187 PGFIADRLLEALWREALHLVNEGVA-TTGEIDDAIRFGAGIRWSFMGTFLTYTLAGGDAGMRHFMQQFGPALELPWTKLV  265 (321)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCccCcCHHHHhhhcChHHHHHHHHHHhhhhhhHHHHhcC
Confidence            4479999999999999999999999 999999999999999855559999999999997 44555665544321   244


Q ss_pred             CCHHHHHHHH-------------cCCCCCCCCCC
Q 004891          697 PSRFLEERAT-------------KGIPLSAPVSS  717 (725)
Q Consensus       697 p~~~l~~~~~-------------~g~gf~~~~~~  717 (725)
                      +++++.++++             +..+||.|.|+
T Consensus       266 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~  299 (321)
T PRK07066        266 APELTDALIDRVVEGTAEQQGPRSIKALERYRDE  299 (321)
T ss_pred             CCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            4545555552             34557777554

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=98.90  E-value=7.9e-09  Score=93.84  Aligned_cols=114  Identities=17%  Similarity=0.158  Sum_probs=72.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEE-eCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~-d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      .||+|||+|.+|..++..|.++|++|..+ .++++..+++...+                      ......+..+.+.+
T Consensus        11 l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~----------------------~~~~~~~~~~~~~~   68 (127)
T PF10727_consen   11 LKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFI----------------------GAGAILDLEEILRD   68 (127)
T ss_dssp             -EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC------------------------TT-----TTGGGCC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccccccccc----------------------cccccccccccccc
Confidence            58999999999999999999999998754 78877766653211                      11222222366889


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHh--CCCCeEEEecCCCCChHHHhcccCCCCcEEEEec
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKA--CPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHF  446 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~--~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~  446 (725)
                      +|+||++||++  ...++.++|...  ..++.+|+=.+.+.+.+.+............+||
T Consensus        69 aDlv~iavpDd--aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP  127 (127)
T PF10727_consen   69 ADLVFIAVPDD--AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP  127 (127)
T ss_dssp             -SEEEE-S-CC--HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred             CCEEEEEechH--HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence            99999999966  567888999887  7789988754445556555555445556667775

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK06223 malate dehydrogenase; Reviewed

Probab=98.90  E-value=3.5e-09  Score=112.83  Aligned_cols=125  Identities=18%  Similarity=0.274  Sum_probs=82.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      |+||+|||+|.||.++|..++..|+ +|+++|++++.++.....+....   .         ......+++.++++++++
T Consensus         2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~---~---------~~~~~~~i~~~~d~~~~~   69 (307)
T PRK06223          2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAA---P---------VEGFDTKITGTNDYEDIA   69 (307)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhh---h---------hcCCCcEEEeCCCHHHHC
Confidence            4799999999999999999999876 99999999887543221111110   0         011113566667788899


Q ss_pred             CCCEEEEec--------------cCChHHHHHHHHHHHHhCCCCeE-EEecCCCCChHHHhcccCC-CCcEEEE
Q 004891          387 DVDMVIEAV--------------IESVPLKQKIFSELEKACPPHCI-LATNTSTIDLNIVGEKTSS-QDRIIGA  444 (725)
Q Consensus       387 ~aDlVIeav--------------pe~~~~k~~v~~~l~~~~~~~~i-i~s~tS~~~~~~l~~~~~~-~~r~ig~  444 (725)
                      +||+||+++              .++..+++++++++.+.+++..+ ++||.+.+....+...... +.+++|+
T Consensus        70 ~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~  143 (307)
T PRK06223         70 GSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGM  143 (307)
T ss_pred             CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEe
Confidence            999999987              35668899999999998865533 3344443333333332222 3455554

>PTZ00117 malate dehydrogenase; Provisional

Probab=98.88  E-value=3.7e-09  Score=112.63  Aligned_cols=125  Identities=22%  Similarity=0.308  Sum_probs=89.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCC-CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      +||+|||+|.||.++|..++..| .+|+++|++++.++...-.+..      ..      .......+++.+++++++++
T Consensus         6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~------~~------~~~~~~~~i~~~~d~~~l~~   73 (319)
T PTZ00117          6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKH------FS------TLVGSNINILGTNNYEDIKD   73 (319)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhh------hc------cccCCCeEEEeCCCHHHhCC
Confidence            58999999999999999999999 6999999998775421111110      00      00011124555678889999


Q ss_pred             CCEEEEec--cCCh------------HHHHHHHHHHHHhCCCC-eEEEecCCCCChHHHhcccCCC-CcEEEEe
Q 004891          388 VDMVIEAV--IESV------------PLKQKIFSELEKACPPH-CILATNTSTIDLNIVGEKTSSQ-DRIIGAH  445 (725)
Q Consensus       388 aDlVIeav--pe~~------------~~k~~v~~~l~~~~~~~-~ii~s~tS~~~~~~l~~~~~~~-~r~ig~h  445 (725)
                      ||+||+++  |++.            .+++++.+++.+++++. .|++||.+.+....+......| .+++|++
T Consensus        74 ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g  147 (319)
T PTZ00117         74 SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA  147 (319)
T ss_pred             CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence            99999999  6666            88899999999998766 4556777766666665655544 7888765

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.88  E-value=3.9e-08  Score=95.65  Aligned_cols=187  Identities=14%  Similarity=0.120  Sum_probs=126.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc----cc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SE  384 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~  384 (725)
                      ++|+.||+|.||..++.++.+.|++|++||+|+++++.+..           .|             ++..+++    +.
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~-----------~g-------------a~~a~sl~el~~~   56 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKD-----------EG-------------ATGAASLDELVAK   56 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHh-----------cC-------------CccccCHHHHHHh
Confidence            47999999999999999999999999999999999887642           12             1112221    34


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCe-------ee
Q 004891          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPL-------LE  457 (725)
Q Consensus       385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~l-------ve  457 (725)
                      +...-.|-.+||- -++..++++++.+.+.++-+|+....+.--..+...-...+  .|+||++.-..+..       .-
T Consensus        57 L~~pr~vWlMvPa-g~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~--kgi~flD~GTSGG~~G~~~G~~l  133 (300)
T COG1023          57 LSAPRIVWLMVPA-GDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAE--KGIHFLDVGTSGGVWGAERGYCL  133 (300)
T ss_pred             cCCCcEEEEEccC-CCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHh--cCCeEEeccCCCCchhhhcCceE
Confidence            5566788899982 23778999999999999999987555433332222111111  27888764433321       11


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCC---eeEEEcC-Ccchhh----hhhhHHH---HHHHHHHHHcC---CCHHHHHHHH-
Q 004891          458 IVRTERTSAQVILDLMTVGKIIKK---VPVVVGN-CTGFAV----NRAFFPY---SQSARLLVSLG---VDVFRIDSAI-  522 (725)
Q Consensus       458 ii~~~~t~~e~~~~~~~l~~~lGk---~~v~v~d-~~Gfi~----nRl~~a~---~~Ea~~l~~~G---v~~~dID~~~-  522 (725)
                      .|.|   ++++++.+.++++.+..   -..++++ ..|-.+    |-|=+.+   ..|.+.++++.   ++.++|-+++ 
T Consensus       134 MiGG---~~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~  210 (300)
T COG1023         134 MIGG---DEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWN  210 (300)
T ss_pred             EecC---cHHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHh
Confidence            3344   69999999999998865   3356654 344333    6553333   34888888874   4888888888 


Q ss_pred             Hhc
Q 004891          523 RSF  525 (725)
Q Consensus       523 ~~~  525 (725)
                      .+.
T Consensus       211 hGS  213 (300)
T COG1023         211 HGS  213 (300)
T ss_pred             Ccc
Confidence            443

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.87  E-value=2.6e-09  Score=92.93  Aligned_cols=91  Identities=21%  Similarity=0.223  Sum_probs=69.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCC---CcEEEE-eCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccc
Q 004891          310 KVAVIGGGLMGSGIATAHILNN---IYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G---~~V~~~-d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l  385 (725)
                      ||+|||+|.||.+|+..|.++|   ++|.++ +++++++++..+++          +           -.....+..+.+
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~----------~-----------~~~~~~~~~~~~   59 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY----------G-----------VQATADDNEEAA   59 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC----------T-----------TEEESEEHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh----------c-----------cccccCChHHhh
Confidence            7999999999999999999999   899955 99999987754311          0           011111334778


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  424 (725)
                      +++|+||.|||  +....+++.++ ....++.+++|.+.
T Consensus        60 ~~advvilav~--p~~~~~v~~~i-~~~~~~~~vis~~a   95 (96)
T PF03807_consen   60 QEADVVILAVK--PQQLPEVLSEI-PHLLKGKLVISIAA   95 (96)
T ss_dssp             HHTSEEEE-S---GGGHHHHHHHH-HHHHTTSEEEEEST
T ss_pred             ccCCEEEEEEC--HHHHHHHHHHH-hhccCCCEEEEeCC
Confidence            89999999998  77788999999 66778888887654

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.77  E-value=7.9e-08  Score=103.73  Aligned_cols=177  Identities=14%  Similarity=0.097  Sum_probs=110.4

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cc
Q 004891          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (725)
Q Consensus       306 ~~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (725)
                      +.++||+|||+|.||+.+|..|+++| +|++|.++++..+...+.-.+  ......+.       .....+..+++. +.
T Consensus         5 ~~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~--~~~l~~~~-------~l~~~i~~t~d~~~a   74 (341)
T PRK12439          5 KREPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRN--SRYLGNDV-------VLSDTLRATTDFAEA   74 (341)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCC--cccCCCCc-------ccCCCeEEECCHHHH
Confidence            34578999999999999999999999 799999999887665321000  00000000       011234556666 56


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh-------HHHhcccCCCCcE-EEEecCCCCC---CC
Q 004891          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-------NIVGEKTSSQDRI-IGAHFFSPAH---VM  453 (725)
Q Consensus       385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-------~~l~~~~~~~~r~-ig~h~~~p~~---~~  453 (725)
                      ++++|+||.|+|  ....+++++++.+.+++++++++.+.++..       +.+.+.+.. .++ +-..|..+..   ..
T Consensus        75 ~~~aDlVilavp--s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~-~~~~~l~GP~~a~ev~~g~  151 (341)
T PRK12439         75 ANCADVVVMGVP--SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPG-HPAGILAGPNIAREVAEGY  151 (341)
T ss_pred             HhcCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCC-CCeEEEECCCHHHHHHcCC
Confidence            789999999999  778889999999999998877777777664       233343322 222 1122211111   11


Q ss_pred             CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcchhhhhh
Q 004891          454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRA  497 (725)
Q Consensus       454 ~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl  497 (725)
                      +...++...  +++..+.+..++..-+-.+....|..|...--.
T Consensus       152 ~t~~via~~--~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~a  193 (341)
T PRK12439        152 AAAAVLAMP--DQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGA  193 (341)
T ss_pred             CeEEEEEeC--CHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHH
Confidence            111122222  577778888888776666666677666544333

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=98.68  E-value=1.7e-06  Score=92.43  Aligned_cols=177  Identities=8%  Similarity=0.073  Sum_probs=104.0

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCC-CCHHHHHHhhcCcccccCccc
Q 004891          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDYSE  384 (725)
Q Consensus       306 ~~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~  384 (725)
                      ++.+||+|||+|.||+.+|..|+++|++|+++.+++..  ...           +.|. +....-+.........++.+.
T Consensus         3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~~--~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~   69 (313)
T PRK06249          3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYE--AVR-----------ENGLQVDSVHGDFHLPPVQAYRSAED   69 (313)
T ss_pred             CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCHH--HHH-----------hCCeEEEeCCCCeeecCceEEcchhh
Confidence            44568999999999999999999999999999998632  211           1110 000000000011222334455


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHH-HhcccCCCCcEEE-Eec-----CCCCC---CC-
Q 004891          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEKTSSQDRIIG-AHF-----FSPAH---VM-  453 (725)
Q Consensus       385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~-l~~~~~~~~r~ig-~h~-----~~p~~---~~-  453 (725)
                      +..+|+||.|++..  ...+++..+.+.+.++++|++...++...+ +...+. ++++++ +.+     ..|..   .. 
T Consensus        70 ~~~~D~vilavK~~--~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~-~~~v~~g~~~~~a~~~~pg~v~~~~~  146 (313)
T PRK06249         70 MPPCDWVLVGLKTT--ANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILP-AEHLLGGLCFICSNRVGPGVIHHLAY  146 (313)
T ss_pred             cCCCCEEEEEecCC--ChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCC-CCcEEEEeeeEeEecCCCeEEEECCC
Confidence            67899999999833  235778888888888888877777776544 444433 334433 222     22210   00 


Q ss_pred             CeeeEecCCCCC-----HHHHHHHHHHHHHcCCeeEEEcCCcchhhhhhh
Q 004891          454 PLLEIVRTERTS-----AQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAF  498 (725)
Q Consensus       454 ~lveii~~~~t~-----~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~  498 (725)
                      ..+.+-.....+     .+.++.+..+++..|-...+..|....+..+++
T Consensus       147 g~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~  196 (313)
T PRK06249        147 GRVNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLV  196 (313)
T ss_pred             CcEEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhh
Confidence            011111111112     466777888888888777776776655554443

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.65  E-value=5.3e-07  Score=94.06  Aligned_cols=190  Identities=14%  Similarity=0.109  Sum_probs=129.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc----c
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----S  383 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~----~  383 (725)
                      ...|||||+|.||+.+|.+++++||.|.+|+|+.++.+...+.          .+.         ...+..+.++    +
T Consensus         3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~----------~~~---------~k~i~~~~sieefV~   63 (473)
T COG0362           3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAE----------RAK---------GKNIVPAYSIEEFVA   63 (473)
T ss_pred             ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHh----------Ccc---------CCCccccCcHHHHHH
Confidence            3569999999999999999999999999999999998876532          110         0134444444    3


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHh--cc-cCCCCcEEEEecC-------CCCCCC
Q 004891          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG--EK-TSSQDRIIGAHFF-------SPAHVM  453 (725)
Q Consensus       384 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~--~~-~~~~~r~ig~h~~-------~p~~~~  453 (725)
                      .++.---|+.+|--. .....++++|.+++.++-||++...+.-...+.  .. ....-.|+|+-.-       +.|.  
T Consensus        64 ~Le~PRkI~lMVkAG-~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPS--  140 (473)
T COG0362          64 SLEKPRKILLMVKAG-TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPS--  140 (473)
T ss_pred             HhcCCceEEEEEecC-CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCC--
Confidence            356667788888644 334678899999999999999765543333222  22 2233457766542       2333  


Q ss_pred             CeeeEecCCCCCHHHHHHHHHHHHHcCCe----e--EEEc-CCcchhh----hhhh---HHHHHHHHHHHHcC--CCHHH
Q 004891          454 PLLEIVRTERTSAQVILDLMTVGKIIKKV----P--VVVG-NCTGFAV----NRAF---FPYSQSARLLVSLG--VDVFR  517 (725)
Q Consensus       454 ~lveii~~~~t~~e~~~~~~~l~~~lGk~----~--v~v~-d~~Gfi~----nRl~---~a~~~Ea~~l~~~G--v~~~d  517 (725)
                          ++||.  ++++.+.+.+++..+..+    |  .+++ +..|-.+    |-+=   +.++.|+..++..+  ++.++
T Consensus       141 ----iMpGG--~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~e  214 (473)
T COG0362         141 ----IMPGG--QKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEE  214 (473)
T ss_pred             ----cCCCC--CHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHH
Confidence                44554  799999999999887532    2  3343 4556444    5442   35667999999884  59999


Q ss_pred             HHHHHHhc
Q 004891          518 IDSAIRSF  525 (725)
Q Consensus       518 ID~~~~~~  525 (725)
                      |-.++..+
T Consensus       215 i~~vF~~W  222 (473)
T COG0362         215 IAEVFEEW  222 (473)
T ss_pred             HHHHHHHh
Confidence            99998444

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=98.64  E-value=1.4e-06  Score=92.84  Aligned_cols=167  Identities=14%  Similarity=0.086  Sum_probs=96.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCC-CCHHHHHHhhcCcccccCc-cccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~-~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      +||+|||+|.||..+|..|+++|++|+++++ ++.++...+           .|. +.....+.. -.....++. +..+
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~-----------~g~~~~~~~~~~~-~~~~~~~~~~~~~~   67 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRE-----------RGLVIRSDHGDAV-VPGPVITDPEELTG   67 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHh-----------CCeEEEeCCCeEE-ecceeecCHHHccC
Confidence            3799999999999999999999999999999 766554321           110 000000000 011123344 3348


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh-HHHhcccCCCCcEE-EEecCCCCCCCC-eee------
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRII-GAHFFSPAHVMP-LLE------  457 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~~~~~r~i-g~h~~~p~~~~~-lve------  457 (725)
                      ++|+||.|++.  .....+++++.+.+.++++|++...++.. +.+...+.. .+++ ++.++......+ .+.      
T Consensus        68 ~~d~vilavk~--~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~-~~v~~g~~~~~~~~~~~g~v~~~~~~~  144 (305)
T PRK12921         68 PFDLVILAVKA--YQLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGR-ERVLGGVVFISAQLNGDGVVVQRADHR  144 (305)
T ss_pred             CCCEEEEEecc--cCHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCCc-ccEEEEEEEEEEEECCCeEEEEcCCCc
Confidence            89999999983  34567788888888888877766666653 334443332 2333 223221111111 111      


Q ss_pred             EecC--CCCCHHHHHHHHHHHHHcCCeeEEEcCCcc
Q 004891          458 IVRT--ERTSAQVILDLMTVGKIIKKVPVVVGNCTG  491 (725)
Q Consensus       458 ii~~--~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G  491 (725)
                      +.-|  +....+..+.+..++...|.......|...
T Consensus       145 ~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~  180 (305)
T PRK12921        145 LTFGEIPGQRSERTRAVRDALAGARLEVVLSENIRQ  180 (305)
T ss_pred             EEEcCCCCCcCHHHHHHHHHHHhCCCCceecHHHHH
Confidence            1111  222345666777788887766666566444

>PRK06444 prephenate dehydrogenase; Provisional

Probab=98.61  E-value=6.4e-07  Score=88.02  Aligned_cols=113  Identities=12%  Similarity=0.072  Sum_probs=82.5

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891          310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (725)
Q Consensus       310 kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  388 (725)
                      ||+|||+ |.||.-++..|.++|+.|++                                                 ++|
T Consensus         2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~~-------------------------------------------------~~~   32 (197)
T PRK06444          2 MEIIIGKNGRLGRVLCSILDDNGLGVYI-------------------------------------------------KKA   32 (197)
T ss_pred             EEEEEecCCcHHHHHHHHHHhCCCEEEE-------------------------------------------------CCC
Confidence            7999999 99999999999999999861                                                 368


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCC-----CeeeEecCCC
Q 004891          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVM-----PLLEIVRTER  463 (725)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~-----~lveii~~~~  463 (725)
                      |+||.|+|  +....++++++.      .+|++.+|+..  .+.+.   ..+|+|.||...|...     +.+ ++..+.
T Consensus        33 DlVilavP--v~~~~~~i~~~~------~~v~Dv~SvK~--~i~~~---~~~~vg~HPMfGp~~a~~~lf~~~-iv~~~~   98 (197)
T PRK06444         33 DHAFLSVP--IDAALNYIESYD------NNFVEISSVKW--PFKKY---SGKIVSIHPLFGPMSYNDGVHRTV-IFINDI   98 (197)
T ss_pred             CEEEEeCC--HHHHHHHHHHhC------CeEEeccccCH--HHHHh---cCCEEecCCCCCCCcCcccccceE-EEECCC
Confidence            99999999  776677777653      25666555543  22221   3479999997654332     222 334567


Q ss_pred             CCHHHHHHHHHHHHHcCCeeEEEc
Q 004891          464 TSAQVILDLMTVGKIIKKVPVVVG  487 (725)
Q Consensus       464 t~~e~~~~~~~l~~~lGk~~v~v~  487 (725)
                      ++++.++.++++++  |..++.+.
T Consensus        99 ~~~~~~~~~~~l~~--G~~~~~~t  120 (197)
T PRK06444         99 SRDNYLNEINEMFR--GYHFVEMT  120 (197)
T ss_pred             CCHHHHHHHHHHHc--CCEEEEeC
Confidence            78888999999998  77777763

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.60  E-value=2.5e-07  Score=99.47  Aligned_cols=105  Identities=18%  Similarity=0.141  Sum_probs=74.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCC-CCHHHHHHhhcCcccccCc-ccc-c
Q 004891          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDY-SEF-K  386 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~-~~~~~~~~~~~~i~~~~~~-~~l-~  386 (725)
                      ||+|||+|.||+.+|..|+++|++|++|+++++.++...+.        ..... +..   ......+..+++. +.+ .
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~--------~~~~~~~~~---~~~~~~i~~~~~~~~~~~~   70 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTK--------RKNLKYLPT---CHLPDNISVKSAIDEVLSD   70 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHc--------CCCcccCCC---CcCCCCeEEeCCHHHHHhC
Confidence            79999999999999999999999999999998876654321        00000 000   0001123445555 344 5


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHH-hCCCCeEEEecCCCCC
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTSTID  427 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~-~~~~~~ii~s~tS~~~  427 (725)
                      ++|+||.|||  .....++++++.+ .+++++.+++.++++.
T Consensus        71 ~~Dliiiavk--s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~  110 (326)
T PRK14620         71 NATCIILAVP--TQQLRTICQQLQDCHLKKNTPILICSKGIE  110 (326)
T ss_pred             CCCEEEEEeC--HHHHHHHHHHHHHhcCCCCCEEEEEEcCee
Confidence            8999999998  7777889999988 8888876666666653

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=98.59  E-value=5.5e-07  Score=95.80  Aligned_cols=111  Identities=18%  Similarity=0.111  Sum_probs=76.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCC-CCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      +||+|||+|.||+.+|..|+++|++|++++++++.++...+           .|. ++..+   ....+..+++.+.+++
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~-----------~g~~~~~~~---~~~~~~~~~~~~~~~~   66 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNE-----------NGLRLEDGE---ITVPVLAADDPAELGP   66 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHH-----------cCCcccCCc---eeecccCCCChhHcCC
Confidence            37999999999999999999999999999998877655432           111 00000   0011222344444589


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh-HHHhccc
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKT  435 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~  435 (725)
                      +|+||.|++  ......+++++.+.+.++++|++...++.. +.+...+
T Consensus        67 ~d~vila~k--~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~  113 (304)
T PRK06522         67 QDLVILAVK--AYQLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYI  113 (304)
T ss_pred             CCEEEEecc--cccHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhc
Confidence            999999998  334578889999988888777776666653 3344433

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=98.58  E-value=6.8e-07  Score=85.66  Aligned_cols=145  Identities=22%  Similarity=0.261  Sum_probs=102.1

Q ss_pred             EEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004891           16 AIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (725)
Q Consensus        16 ~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (725)
                      .+|.++.    .+++.+.+-|.++++.++++ +++.|+|.=.    |-|+++..                ...++ +.|.
T Consensus         2 ~vi~i~G----~I~~~~~~~l~~~l~~A~~~-~~~~i~l~in----SPGG~v~~----------------~~~I~-~~i~   55 (172)
T cd07015           2 YVAQIKG----QITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADA----------------AGNIV-QRIQ   55 (172)
T ss_pred             EEEEEee----EECHhHHHHHHHHHHHHhcC-CCCeEEEEEE----CCCCCHHH----------------HHHHH-HHHH
Confidence            3455543    36777888899999998865 5677777411    12233221                12344 6677


Q ss_pred             hCCCcEEEEEc---ccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCch--h------hch------HhhhhC--H
Q 004891           96 DCKKPIVAAVE---GLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFG--G------TQR------LPRLVG--L  156 (725)
Q Consensus        96 ~~~kp~Iaav~---G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g--~------~~~------l~r~vG--~  156 (725)
                      ..++||++.|.   |.|..+|.-++++||.++|.+++.++....-.|.-+...  .      ...      +.+.-|  .
T Consensus        56 ~~~~pvv~~v~p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~  135 (172)
T cd07015          56 QSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNA  135 (172)
T ss_pred             hcCcCEEEEEecCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCH
Confidence            89999999999   999999999999999999999999998777433211000  0      011      122223  4


Q ss_pred             HHHHHHHHcCCCCCHHHHHHcCCcceecCc
Q 004891          157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTS  186 (725)
Q Consensus       157 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  186 (725)
                      ..+..++.....++|+||++.|++|.|+..
T Consensus       136 ~~a~~~v~~~~~lta~EA~~~G~iD~ia~~  165 (172)
T cd07015         136 TIAEEFITKDLSLTPEEALKYGVIEVVARD  165 (172)
T ss_pred             HHHHHHHHhhcCcCHHHHHHcCCceeeeCC
Confidence            667788888999999999999999999854

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=98.52  E-value=2.6e-07  Score=97.84  Aligned_cols=101  Identities=17%  Similarity=0.261  Sum_probs=69.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      +||+|||+|.||.++|..++..|+ +|+++|++++.. ++..     ++. .+.+     .......+++++++++.+++
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~-~g~a-----~d~-~~~~-----~~~~~~~~i~~t~d~~~~~~   69 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIP-QGKA-----LDM-YEAS-----PVGGFDTKVTGTNNYADTAN   69 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChh-HHHH-----Hhh-hhhh-----hccCCCcEEEecCCHHHhCC
Confidence            489999999999999999999887 899999986643 3221     000 0111     00111246777788877999


Q ss_pred             CCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEec
Q 004891          388 VDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATN  422 (725)
Q Consensus       388 aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~  422 (725)
                      ||+||.+++              .+..+.+++.+++.++. ++++++..
T Consensus        70 aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~  117 (305)
T TIGR01763        70 SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVV  117 (305)
T ss_pred             CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe
Confidence            999999996              24456667777788876 55555433

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=98.50  E-value=3.2e-07  Score=98.13  Aligned_cols=107  Identities=18%  Similarity=0.127  Sum_probs=77.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCC--------CcEEEEeC-----ChHHHHHHHHHHHHHHHhhHHcC-CCCHHHHHHhhcC
Q 004891          310 KVAVIGGGLMGSGIATAHILNN--------IYVVLKEV-----NSEYLLKGIKTIEANVRGLVTRG-KLTQDKANNALKM  375 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G--------~~V~~~d~-----~~e~~~~~~~~i~~~l~~~~~~g-~~~~~~~~~~~~~  375 (725)
                      ||+|||+|.||.++|..++.+|        ++|++|.+     +++..+...        +..+.. .+..   -.....
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in--------~~~~n~~ylpg---i~Lp~~   69 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIIN--------TTHENVKYLPG---IKLPAN   69 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHH--------hcCCCccccCC---CcCCCC
Confidence            6999999999999999999999        99999998     333322221        111111 0100   001235


Q ss_pred             cccccCc-ccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 004891          376 LKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  429 (725)
Q Consensus       376 i~~~~~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~  429 (725)
                      +..++|+ +++++||+||.+||  .+..+.+++++.++++++.++++.+.++...
T Consensus        70 i~at~dl~eal~~ADiIIlAVP--s~~i~~vl~~l~~~l~~~~~iVs~tKGie~~  122 (342)
T TIGR03376        70 LVAVPDLVEAAKGADILVFVIP--HQFLEGICKQLKGHVKPNARAISCIKGLEVS  122 (342)
T ss_pred             eEEECCHHHHHhcCCEEEEECC--hHHHHHHHHHHHhhcCCCCEEEEEeCCcccC
Confidence            6677787 56799999999999  8888899999999999888888877776544

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK10949 protease 4; Provisional

Probab=98.50  E-value=6.5e-07  Score=102.62  Aligned_cols=162  Identities=19%  Similarity=0.226  Sum_probs=104.6

Q ss_pred             cCcEEEEEeCCC----C--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchh
Q 004891           12 NDGVAIITLINP----P--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV   85 (725)
Q Consensus        12 ~~~v~~i~l~~p----~--~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   85 (725)
                      .+.|++|+++..    +  .+.++.   +.+.+.|+++..|++||+|||+=..+    |+....             .+.
T Consensus       325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrInSp----GGs~~a-------------se~  384 (618)
T PRK10949        325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVNSP----GGSVTA-------------SEV  384 (618)
T ss_pred             CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEecCC----CCcHHH-------------HHH
Confidence            567999998643    1  233443   56788899999999999999974422    221110             011


Q ss_pred             HHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCccc------------ccCCCCCchhhc-----
Q 004891           86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL------------TLGVIPGFGGTQ-----  148 (725)
Q Consensus        86 ~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~------------~~Gl~p~~g~~~-----  148 (725)
                      +.+.+ ..++...|||||.+.+.|..||+.++++||.++|.+.+..|.-.+            ++|+-+..-.+-     
T Consensus       385 i~~~i-~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~  463 (618)
T PRK10949        385 IRAEL-AAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADV  463 (618)
T ss_pred             HHHHH-HHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCc
Confidence            22333 335667899999999999999999999999999998765544222            234332211110     


Q ss_pred             ------------hH-----------------hhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHH
Q 004891          149 ------------RL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRL  195 (725)
Q Consensus       149 ------------~l-----------------~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~  195 (725)
                                  .+                 .|.+..... +-+..|+.+++++|++.||||++-..++..+.+.+
T Consensus       464 ~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v-~~ia~Grv~tg~~A~~~GLVD~lG~~~~ai~~a~~  538 (618)
T PRK10949        464 SITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQI-DKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAE  538 (618)
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHH-HHHhcCCcccHHHHHHcCCCccCCCHHHHHHHHHH
Confidence                        00                 122222332 33568999999999999999999765544444333

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.49  E-value=2.1e-07  Score=100.27  Aligned_cols=111  Identities=21%  Similarity=0.134  Sum_probs=78.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCC-------CcEEEEeCChHH-HHHHHHHHHHHHHhhHHc-CCCCHHHHHHhhcCcccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNN-------IYVVLKEVNSEY-LLKGIKTIEANVRGLVTR-GKLTQDKANNALKMLKGV  379 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G-------~~V~~~d~~~e~-~~~~~~~i~~~l~~~~~~-g~~~~~~~~~~~~~i~~~  379 (725)
                      +||+|||+|.||+++|..++++|       ++|.+|.++++. -+...+.+    .....+ ..+..-   .....+..+
T Consensus        12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~i----n~~~~N~~ylp~~---~Lp~ni~~t   84 (365)
T PTZ00345         12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDII----NTKHENVKYLPGI---KLPDNIVAV   84 (365)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHH----HhcCCCcccCCCC---cCCCceEEe
Confidence            68999999999999999999997       799999999862 11111111    111111 111100   122456777


Q ss_pred             cCc-ccccCCCEEEEeccCChHHHHHHHHHHHH--hCCCCeEEEecCCCCCh
Q 004891          380 LDY-SEFKDVDMVIEAVIESVPLKQKIFSELEK--ACPPHCILATNTSTIDL  428 (725)
Q Consensus       380 ~~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~--~~~~~~ii~s~tS~~~~  428 (725)
                      +|+ +++++||+||.+||  .+..+++++++.+  .++++++++|.+.++..
T Consensus        85 sdl~eav~~aDiIvlAVP--sq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~  134 (365)
T PTZ00345         85 SDLKEAVEDADLLIFVIP--HQFLESVLSQIKENNNLKKHARAISLTKGIIV  134 (365)
T ss_pred             cCHHHHHhcCCEEEEEcC--hHHHHHHHHHhccccccCCCCEEEEEeCCccc
Confidence            777 57899999999999  8889999999988  77778777776666543

>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=98.47  E-value=2e-07  Score=96.81  Aligned_cols=171  Identities=16%  Similarity=0.134  Sum_probs=133.6

Q ss_pred             cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCcccccchhHHHHH
Q 004891           12 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSLMPDVSVELV   90 (725)
Q Consensus        12 ~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~   90 (725)
                      -.+++.+.++ |+.|..|.++..+|..-++.+..+..+++..+|+.. ..|++|.|..++.-..... .......+.+++
T Consensus        64 y~~~~~~dmv-ieav~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~f-spa~~m~LlEii  141 (380)
T KOG1683|consen   64 YTGFANADMV-IEAVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFF-SPAHWMQLLEII  141 (380)
T ss_pred             ccccccccee-ccchhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhcccccc-CHHHHHHHHHHH
Confidence            3478888887 889999999999999999999999889999999877 6799999999887543321 222334456777


Q ss_pred             HHHHhhCCCcEEEEEcccccchh--hHHhhhcCEEEee--CCceEeCcccccCC-CCCchhhchHhhhhCHHHHHHHHHc
Q 004891           91 VNLIEDCKKPIVAAVEGLALGGG--LELAMGCHARIAA--PKTQLGLPELTLGV-IPGFGGTQRLPRLVGLSKAIEMMLL  165 (725)
Q Consensus        91 ~~~l~~~~kp~Iaav~G~a~GgG--~~lalacD~~ia~--~~a~~~~pe~~~Gl-~p~~g~~~~l~r~vG~~~a~~l~l~  165 (725)
                       ....+++.|+.+++||.+--|+  +-++.+|+|++..  ..-..+..+..+++ .|.+- ...+...+|.+.+-.-+--
T Consensus       142 -~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~-iD~~~t~fGf~~g~~~L~d  219 (380)
T KOG1683|consen  142 -LALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWL-IDSLITKFGFRVGERALAD  219 (380)
T ss_pred             -HhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHH-HHHHHHhcCccccHHHHhh
Confidence             5689999999999999998888  8899999999998  44444677777773 34333 3334444565555555667


Q ss_pred             CCCCCHHHHHHcCCcceecCc
Q 004891          166 SKSITSEEGWKLGLIDAVVTS  186 (725)
Q Consensus       166 g~~~~a~eA~~~Glv~~vv~~  186 (725)
                      +.-++..||++-|+++++.|.
T Consensus       220 ~~gfdv~eal~~gl~~~~~~r  240 (380)
T KOG1683|consen  220 GVGFDVAEALAVGLGDEIGPR  240 (380)
T ss_pred             ccCccHHHHHhhccchhccch
Confidence            888999999999999999984

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=98.45  E-value=1.2e-06  Score=91.20  Aligned_cols=86  Identities=17%  Similarity=0.183  Sum_probs=64.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||.|.||.++|.+|...|++|+++++.....+.+.           ..|             .... ++ +.++.
T Consensus        17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~-----------~~G-------------~~v~-sl~Eaak~   71 (335)
T PRK13403         17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAK-----------ADG-------------FEVM-SVSEAVRT   71 (335)
T ss_pred             CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHH-----------HcC-------------CEEC-CHHHHHhc
Confidence            6899999999999999999999999999987643322221           111             1212 33 67899


Q ss_pred             CCEEEEeccCChHHHHHHH-HHHHHhCCCCeEEEe
Q 004891          388 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILAT  421 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~-~~l~~~~~~~~ii~s  421 (725)
                      ||+|+.++|. .+. +.++ .++.+.++++++++-
T Consensus        72 ADVV~llLPd-~~t-~~V~~~eil~~MK~GaiL~f  104 (335)
T PRK13403         72 AQVVQMLLPD-EQQ-AHVYKAEVEENLREGQMLLF  104 (335)
T ss_pred             CCEEEEeCCC-hHH-HHHHHHHHHhcCCCCCEEEE
Confidence            9999999996 343 4555 578899999998763

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=98.44  E-value=5.6e-07  Score=96.28  Aligned_cols=112  Identities=13%  Similarity=0.012  Sum_probs=80.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||+|.||.++|..+...|++|++||++++.....                            +....++ +.+++
T Consensus       147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----------------------------~~~~~~l~ell~~  198 (330)
T PRK12480        147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----------------------------LTYKDSVKEAIKD  198 (330)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----------------------------hhccCCHHHHHhc
Confidence            479999999999999999999999999999987542110                            1112334 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhcccCC-CCcEEEEecCC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSS-QDRIIGAHFFS  448 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~~-~~r~ig~h~~~  448 (725)
                      ||+|+.++|...+....+.+++.+.++++++++..+-+..+  ..+.+.+.. +-...++.-|.
T Consensus       199 aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~  262 (330)
T PRK12480        199 ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYE  262 (330)
T ss_pred             CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccC
Confidence            99999999988887777778888899999998765555444  344454432 22334444443

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=98.44  E-value=4e-07  Score=94.68  Aligned_cols=98  Identities=30%  Similarity=0.376  Sum_probs=75.9

Q ss_pred             EEEEcC-CCCcHHHHHHHHHCC----CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccC-ccc
Q 004891          311 VAVIGG-GLMGSGIATAHILNN----IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD-YSE  384 (725)
Q Consensus       311 IaVIG~-G~mG~~iA~~l~~~G----~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~  384 (725)
                      |+|||+ |.||.++|..++..|    .+|+++|++++.++.....+++.....             ...+++.++| +++
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-------------~~~~i~~~~d~~~~   67 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL-------------ADIKVSITDDPYEA   67 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc-------------cCcEEEECCchHHH
Confidence            689999 999999999999999    799999999988777655444332221             0135666677 488


Q ss_pred             ccCCCEEEE--------------eccCChHHHHHHHHHHHHhCCCCeEEEec
Q 004891          385 FKDVDMVIE--------------AVIESVPLKQKIFSELEKACPPHCILATN  422 (725)
Q Consensus       385 l~~aDlVIe--------------avpe~~~~k~~v~~~l~~~~~~~~ii~s~  422 (725)
                      +++||+||+              .+.++..+++++.+++.+++ |+++++.-
T Consensus        68 ~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~  118 (263)
T cd00650          68 FKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVV  118 (263)
T ss_pred             hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe
Confidence            999999999              55678889999999999998 66665533

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=98.40  E-value=5.4e-06  Score=81.63  Aligned_cols=147  Identities=16%  Similarity=0.129  Sum_probs=96.7

Q ss_pred             cHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccc-cCcccccCCCEEEEeccCC
Q 004891          320 GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDYSEFKDVDMVIEAVIES  398 (725)
Q Consensus       320 G~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~l~~aDlVIeavpe~  398 (725)
                      |+.+|..++.+||+|++.|.|.+-.+..      .+++..+.|             +..+ +|.++++.+.+.|.-.|-.
T Consensus        33 Ga~mAiefAeAGHDVVLaePn~d~~dd~------~w~~vedAG-------------V~vv~dD~eaa~~~Ei~VLFTPFG   93 (340)
T COG4007          33 GARMAIEFAEAGHDVVLAEPNRDIMDDE------HWKRVEDAG-------------VEVVSDDAEAAEHGEIHVLFTPFG   93 (340)
T ss_pred             chHHHHHHHHcCCcEEeecCCccccCHH------HHHHHHhcC-------------cEEecCchhhhhcceEEEEecccc
Confidence            8899999999999999999987654432      112222222             3334 4458899999999988843


Q ss_pred             hHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHh----cccCCCCcEEEEecCCCCCCC----CeeeEecCCCC------
Q 004891          399 VPLKQKIFSELEKACPPHCILATNTSTIDLNIVG----EKTSSQDRIIGAHFFSPAHVM----PLLEIVRTERT------  464 (725)
Q Consensus       399 ~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~----~~~~~~~r~ig~h~~~p~~~~----~lveii~~~~t------  464 (725)
                      . ..-.+.++|.++++.+++|+ ||.+.++-.+-    ..+..+.+-+|+..+.|..+-    ...-++.|..+      
T Consensus        94 k-~T~~Iarei~~hvpEgAVic-nTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~yviagr~t~g~elA  171 (340)
T COG4007          94 K-ATFGIAREILEHVPEGAVIC-NTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQHGHYVIAGRSTEGKELA  171 (340)
T ss_pred             h-hhHHHHHHHHhhCcCCcEec-ccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCCceEEEeccCCCceeec
Confidence            1 34467788999999999886 45554443333    334444444555555443221    11223333333      


Q ss_pred             CHHHHHHHHHHHHHcCCeeEEEc
Q 004891          465 SAQVILDLMTVGKIIKKVPVVVG  487 (725)
Q Consensus       465 ~~e~~~~~~~l~~~lGk~~v~v~  487 (725)
                      ++|.++++.++++..||.+.++.
T Consensus       172 TeEQi~r~velaes~Gk~~yv~p  194 (340)
T COG4007         172 TEEQIERCVELAESTGKEVYVLP  194 (340)
T ss_pred             cHHHHHHHHHHHHhcCCceEecC
Confidence            78999999999999999998873

>TIGR00112 proC pyrroline-5-carboxylate reductase

Probab=98.39  E-value=9.6e-06  Score=83.34  Aligned_cols=164  Identities=16%  Similarity=0.099  Sum_probs=116.4

Q ss_pred             CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccCCCEEEEeccCChHHHHHHHHHHH
Q 004891          332 IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELE  410 (725)
Q Consensus       332 ~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~  410 (725)
                      ++|++++|++++++...+.                      ++ +..+.+. +.+.+||+||.||+  ++...+++.++.
T Consensus        10 ~~I~v~~R~~e~~~~l~~~----------------------~g-~~~~~~~~e~~~~aDiIiLaVk--P~~i~~vl~~l~   64 (245)
T TIGR00112        10 YDIIVINRSPEKLAALAKE----------------------LG-IVASSDAQEAVKEADVVFLAVK--PQDLEEVLSELK   64 (245)
T ss_pred             CeEEEEcCCHHHHHHHHHH----------------------cC-cEEeCChHHHHhhCCEEEEEeC--HHHHHHHHHHHh
Confidence            5899999999886654321                      11 2223333 45688999999998  777788889888


Q ss_pred             HhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEe-cCCCCCHHHHHHHHHHHHHcCCeeEEEcCC
Q 004891          411 KACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTERTSAQVILDLMTVGKIIKKVPVVVGNC  489 (725)
Q Consensus       411 ~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii-~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~  489 (725)
                      +.+.++.+|+|...++++..+...+....+++.+.|+.|......+..+ .++.++++..+.+..++..+|+...+ .|.
T Consensus        65 ~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v-~E~  143 (245)
T TIGR00112        65 SEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVEL-PEA  143 (245)
T ss_pred             hhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEE-CHH
Confidence            7777788999999999999998888655578999998888777665555 56778899999999999999976644 331


Q ss_pred             --cchhh-----hhhhHHHHHHHH--HHHHcCCCHHHHHHHH
Q 004891          490 --TGFAV-----NRAFFPYSQSAR--LLVSLGVDVFRIDSAI  522 (725)
Q Consensus       490 --~Gfi~-----nRl~~a~~~Ea~--~l~~~Gv~~~dID~~~  522 (725)
                        ..+.+     .-+++ ++.|++  ..+..|+++++..+++
T Consensus       144 ~~~~~talsgsgPA~~~-~~~~al~~~~v~~Gl~~~~A~~lv  184 (245)
T TIGR00112       144 LMDAVTALSGSGPAYVF-LFIEALADAGVKQGLPRELALELA  184 (245)
T ss_pred             HcchHHhhccCcHHHHH-HHHHHHHHHHHHcCCCHHHHHHHH
Confidence              11111     11222 222332  4456699998888876

This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=98.39  E-value=4.1e-06  Score=80.19  Aligned_cols=131  Identities=18%  Similarity=0.209  Sum_probs=92.5

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEE--cCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEE
Q 004891           28 LAIPIVAGLKDKFEEATSRDDVKAIVLT--GNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (725)
Q Consensus        28 l~~~~~~~l~~~l~~~~~~~~v~~vVl~--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav  105 (725)
                      ++..+.+++.+.|..++.++.++.|+|.  +.|+      ++.                ....++ +.|..+++|+++.+
T Consensus         9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG------~v~----------------~~~~i~-~~i~~~~~~v~~~~   65 (162)
T cd07013           9 VEDISANQFAAQLLFLGAVNPEKDIYLYINSPGG------DVF----------------AGMAIY-DTIKFIKADVVTII   65 (162)
T ss_pred             ECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCC------cHH----------------HHHHHH-HHHHhcCCCceEEE
Confidence            5678899999999999988777777763  4432      221                122445 66888999999999


Q ss_pred             cccccchhhHHhhhcC--EEEeeCCceEeCcccccCCCCCchhh-----------------chHhhh--hCHHHHHHHHH
Q 004891          106 EGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGT-----------------QRLPRL--VGLSKAIEMML  164 (725)
Q Consensus       106 ~G~a~GgG~~lalacD--~~ia~~~a~~~~pe~~~Gl~p~~g~~-----------------~~l~r~--vG~~~a~~l~l  164 (725)
                      .|.|.++|.-++++||  .|++.++++|.+....-+.. + ...                 ..+.+.  .......+++-
T Consensus        66 ~g~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~-g-~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~  143 (162)
T cd07013          66 DGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTL-G-DATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLE  143 (162)
T ss_pred             EeehhhHHHHHHHcCCCCcEEEecCEEEEEccCccccc-C-CHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHc
Confidence            9999999999999999  68888888887644322211 1 111                 011122  23455667777


Q ss_pred             cCCCCCHHHHHHcCCccee
Q 004891          165 LSKSITSEEGWKLGLIDAV  183 (725)
Q Consensus       165 ~g~~~~a~eA~~~Glv~~v  183 (725)
                      .+..++|+||++.||||++
T Consensus       144 ~~~~~sa~eA~~~GliD~i  162 (162)
T cd07013         144 RDTWLSAREAVEYGFADTI  162 (162)
T ss_pred             CCccccHHHHHHcCCCCcC
Confidence            7888899999999999985

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=98.32  E-value=1.2e-06  Score=86.75  Aligned_cols=104  Identities=19%  Similarity=0.269  Sum_probs=72.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC---hHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc--
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN---SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--  382 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~---~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~--  382 (725)
                      .||+|||+|.||+.+|..|+++|+ +++++|.+   ++.+.+-.  .     ...+.|....+.....+.++....+.  
T Consensus        22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~--~-----~~~~iG~~Ka~~~~~~l~~inp~~~i~~   94 (200)
T TIGR02354        22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQ--Y-----KASQVGEPKTEALKENISEINPYTEIEA   94 (200)
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccccccccc--C-----ChhhCCCHHHHHHHHHHHHHCCCCEEEE
Confidence            579999999999999999999999 69999998   65554411  0     00112222233333333333332222  


Q ss_pred             -----------ccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEE
Q 004891          383 -----------SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  420 (725)
Q Consensus       383 -----------~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~  420 (725)
                                 +.++++|+||+| .++...|..++.++....+...++.
T Consensus        95 ~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~  142 (200)
T TIGR02354        95 YDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIA  142 (200)
T ss_pred             eeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEE
Confidence                       246789999999 6899999999999988877766665

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.29  E-value=3e-06  Score=90.36  Aligned_cols=83  Identities=13%  Similarity=0.084  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHh---CHHHHHHHHHHHHHHhCC-CCCCC
Q 004891          623 EIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAV---GANYVYTSLKKWSQLYGN-FFKPS  698 (725)
Q Consensus       623 ~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~---G~~~~~~~~~~~~~~~~~-~~~p~  698 (725)
                      .+.||++.++++||+.++++|++ |+++||.++..|+|+|+..-|||++.|..   |++.+......+....++ .+.|+
T Consensus       188 ~i~nrl~~a~~~EA~~l~~~g~~-~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~~  266 (308)
T PRK06129        188 FVLNRLQGALLREAFRLVADGVA-SVDDIDAVIRDGLGLRWSFMGPFETIDLNAPGGVADYAQRYGPMYRRMAAERGQPV  266 (308)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCccCcCHHHHHhccccccHHHHHHHHHHHHHhhccccCCCc
Confidence            58999999999999999999999 99999999999999985446999999987   999999999999888876 88899


Q ss_pred             HHHHHHHH
Q 004891          699 RFLEERAT  706 (725)
Q Consensus       699 ~~l~~~~~  706 (725)
                      |+++++++
T Consensus       267 ~~~~~~~~  274 (308)
T PRK06129        267 PWDGELVA  274 (308)
T ss_pred             hhhHHHHH
Confidence            99998884

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.26  E-value=1.3e-05  Score=79.44  Aligned_cols=135  Identities=20%  Similarity=0.203  Sum_probs=91.0

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEE
Q 004891           26 NALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA  103 (725)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia  103 (725)
                      ..++.++...+...|..++.++..+-|.|  .+.|      +|+.                ....++ +.|...+.|+++
T Consensus        38 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpG------G~v~----------------~g~~I~-d~i~~~~~~v~t   94 (200)
T PRK00277         38 GEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG------GSVT----------------AGLAIY-DTMQFIKPDVST   94 (200)
T ss_pred             CEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCC------CcHH----------------HHHHHH-HHHHhcCCCEEE
Confidence            45788899999999998886654443443  3333      2221                122445 667788899999


Q ss_pred             EEcccccchhhHHhhhcC--EEEeeCCceEeCcccccCCCCCchhh------------------chHhhhhC--HHHHHH
Q 004891          104 AVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGT------------------QRLPRLVG--LSKAIE  161 (725)
Q Consensus       104 av~G~a~GgG~~lalacD--~~ia~~~a~~~~pe~~~Gl~p~~g~~------------------~~l~r~vG--~~~a~~  161 (725)
                      .+.|.|.+.|..++++++  .|++.+.++|.+....-|.   +|-.                  ..+...-|  .....+
T Consensus        95 ~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~---~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~  171 (200)
T PRK00277         95 ICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGF---QGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEK  171 (200)
T ss_pred             EEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            999999999999999743  5777777776664433221   1111                  11222223  356667


Q ss_pred             HHHcCCCCCHHHHHHcCCcceecCc
Q 004891          162 MMLLSKSITSEEGWKLGLIDAVVTS  186 (725)
Q Consensus       162 l~l~g~~~~a~eA~~~Glv~~vv~~  186 (725)
                      ++-.+..++|+||++.||||+|+..
T Consensus       172 ~~~~~~~lsa~EA~e~GliD~Ii~~  196 (200)
T PRK00277        172 DTDRDNFMSAEEAKEYGLIDEVLTK  196 (200)
T ss_pred             HhhCCccccHHHHHHcCCccEEeec
Confidence            7778899999999999999999854

>PRK13243 glyoxylate reductase; Reviewed

Probab=98.23  E-value=4.7e-06  Score=89.47  Aligned_cols=102  Identities=15%  Similarity=0.108  Sum_probs=72.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||+|.||..+|..+...|++|++||++...... .           ..+             .. ..++ +.+++
T Consensus       151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~-~-----------~~~-------------~~-~~~l~ell~~  204 (333)
T PRK13243        151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAE-K-----------ELG-------------AE-YRPLEELLRE  204 (333)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhH-H-----------HcC-------------CE-ecCHHHHHhh
Confidence            68999999999999999999999999999998643211 0           001             11 1233 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhcccC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS  436 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~  436 (725)
                      ||+|+.++|...+.+.-+-.+..+.++++++++..+.+-.+  ..+.+.+.
T Consensus       205 aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~  255 (333)
T PRK13243        205 SDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALK  255 (333)
T ss_pred             CCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHH
Confidence            99999999977776666657788889999988744443333  34444443

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=98.23  E-value=3.3e-06  Score=78.88  Aligned_cols=101  Identities=24%  Similarity=0.298  Sum_probs=68.7

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccc
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l  385 (725)
                      +||+|||+ |..|+++|..|...++  +++++|++++.++.-...+++.......             .......+++++
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~-------------~~~i~~~~~~~~   67 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPS-------------PVRITSGDYEAL   67 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTE-------------EEEEEESSGGGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccc-------------cccccccccccc
Confidence            48999999 9999999999999876  8999999988766544333332211100             112223567899


Q ss_pred             cCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891          386 KDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT  423 (725)
Q Consensus       386 ~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (725)
                      ++||+||.+.-.              +..+.+++..++.++. |+++++..|
T Consensus        68 ~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvt  118 (141)
T PF00056_consen   68 KDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVT  118 (141)
T ss_dssp             TTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-S
T ss_pred             ccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeC
Confidence            999999988732              3345566666788887 555554443

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=98.20  E-value=3.2e-06  Score=78.85  Aligned_cols=93  Identities=17%  Similarity=0.220  Sum_probs=63.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChH-HHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e-~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      ++|+|||.|..|.+.|.+|..+|++|++-.+..+ ..+++.           +.|             ....+-.++++.
T Consensus         5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~-----------~~G-------------f~v~~~~eAv~~   60 (165)
T PF07991_consen    5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAK-----------ADG-------------FEVMSVAEAVKK   60 (165)
T ss_dssp             SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHH-----------HTT--------------ECCEHHHHHHC
T ss_pred             CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHH-----------HCC-------------CeeccHHHHHhh
Confidence            6899999999999999999999999999988766 444432           222             333333377899


Q ss_pred             CCEEEEeccCChHHHHHHH-HHHHHhCCCCeEEEecCCCCCh
Q 004891          388 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTIDL  428 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~-~~l~~~~~~~~ii~s~tS~~~~  428 (725)
                      +|+|+..+|  -+.-.+++ ++|.+.++++.++.- +.++.+
T Consensus        61 aDvV~~L~P--D~~q~~vy~~~I~p~l~~G~~L~f-ahGfni   99 (165)
T PF07991_consen   61 ADVVMLLLP--DEVQPEVYEEEIAPNLKPGATLVF-AHGFNI   99 (165)
T ss_dssp             -SEEEE-S---HHHHHHHHHHHHHHHS-TT-EEEE-SSSHHH
T ss_pred             CCEEEEeCC--hHHHHHHHHHHHHhhCCCCCEEEe-CCcchh
Confidence            999999999  44455777 789999999998864 344433

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=98.15  E-value=0.00019  Score=75.99  Aligned_cols=166  Identities=14%  Similarity=0.092  Sum_probs=100.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  388 (725)
                      +||.|+|+|.||+-++..|+++|.+|+++-|++. +++..+           .|..-.............+.+.+.+..+
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~-----------~GL~i~~~~~~~~~~~~~~~~~~~~~~~   68 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKK-----------KGLRIEDEGGNFTTPVVAATDAEALGPA   68 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHh-----------CCeEEecCCCccccccccccChhhcCCC
Confidence            4899999999999999999999988888888875 554432           1211000000000112223334667799


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHH-HhcccCCCCcEEEEecCCCCCCCCeeeEec-------
Q 004891          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEKTSSQDRIIGAHFFSPAHVMPLLEIVR-------  460 (725)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~-l~~~~~~~~r~ig~h~~~p~~~~~lveii~-------  460 (725)
                      |+||.++-  .-...++++.+.+.++++++|++.-.++...+ +.+......-+.|+-+.......+..-...       
T Consensus        69 Dlviv~vK--a~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~i  146 (307)
T COG1893          69 DLVIVTVK--AYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVI  146 (307)
T ss_pred             CEEEEEec--cccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEE
Confidence            99999985  55667889999999999998887777776655 333333332244444433322222211111       


Q ss_pred             CCC--CCHHHHHHHHHHHHHcCCeeEEEcC
Q 004891          461 TER--TSAQVILDLMTVGKIIKKVPVVVGN  488 (725)
Q Consensus       461 ~~~--t~~e~~~~~~~l~~~lGk~~v~v~d  488 (725)
                      |+.  -.++.++.+.++++..|-...+..+
T Consensus       147 g~~~~~~~~~~~~i~~~~~~a~~~~~~~~d  176 (307)
T COG1893         147 GELRGGRDELVKALAELFKEAGLEVELHPD  176 (307)
T ss_pred             ccCCCCchHHHHHHHHHHHhCCCCeEEcHH
Confidence            111  1336777777777666655555443

>PRK06436 glycerate dehydrogenase; Provisional

Probab=98.15  E-value=1.1e-05  Score=85.22  Aligned_cols=134  Identities=11%  Similarity=0.065  Sum_probs=85.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||.|.||..+|..+...|++|++||++...                 .+.            .....++ +.+++
T Consensus       123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~-----------------~~~------------~~~~~~l~ell~~  173 (303)
T PRK06436        123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN-----------------DGI------------SSIYMEPEDIMKK  173 (303)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc-----------------cCc------------ccccCCHHHHHhh
Confidence            78999999999999999888789999999997421                 000            0001233 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhcccCC-CCcEEEEecCC--CC---CCCCeeeEe
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFFS--PA---HVMPLLEIV  459 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~-~~r~ig~h~~~--p~---~~~~lveii  459 (725)
                      ||+|+.++|...+.+.-+-++....++++++++..+.+  +....+.+.+.. .....++..|.  |.   +..+-+-++
T Consensus       174 aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~~~~nviiT  253 (303)
T PRK06436        174 SDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITETNPDNVILS  253 (303)
T ss_pred             CCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccCCCCCEEEC
Confidence            99999999987776655556677789999988743333  223355555542 23344554442  21   233556666


Q ss_pred             cC-C-CCCHHHHHH
Q 004891          460 RT-E-RTSAQVILD  471 (725)
Q Consensus       460 ~~-~-~t~~e~~~~  471 (725)
                      |+ . .++++..+.
T Consensus       254 PHi~g~~t~e~~~~  267 (303)
T PRK06436        254 PHVAGGMSGEIMQP  267 (303)
T ss_pred             CccccccCHHHHHH
Confidence            76 2 245554443

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=98.15  E-value=3.9e-06  Score=89.25  Aligned_cols=99  Identities=24%  Similarity=0.290  Sum_probs=67.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCC--CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G--~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      +||+|||+|.+|+++|..|+..|  .+|+++|++++.++.....+.+...... ..           ..+ ...+++.++
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~-~~-----------~~i-~~~~~~~l~   67 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLP-SP-----------VKI-KAGDYSDCK   67 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccC-CC-----------eEE-EcCCHHHhC
Confidence            48999999999999999999999  5899999999887655443332211000 00           012 234557789


Q ss_pred             CCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEe
Q 004891          387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILAT  421 (725)
Q Consensus       387 ~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s  421 (725)
                      +||+||.+...              +..+.+++..++.++.+ +++++.
T Consensus        68 ~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~-~~~viv  115 (306)
T cd05291          68 DADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGF-DGIFLV  115 (306)
T ss_pred             CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEE
Confidence            99999999853              33455666677888765 555543

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=98.15  E-value=1.4e-05  Score=85.07  Aligned_cols=177  Identities=10%  Similarity=-0.028  Sum_probs=100.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  388 (725)
                      +||+|||+|.||+-+|..|+++|++|++++|.++.++...+.  +.+. ....+...      . -... ..+.+....+
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~--~Gl~-i~~~g~~~------~-~~~~-~~~~~~~~~~   71 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQA--GGLT-LVEQGQAS------L-YAIP-AETADAAEPI   71 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhc--CCeE-EeeCCcce------e-eccC-CCCccccccc
Confidence            479999999999999999999999999999988776654320  0000 00011000      0 0011 1112335678


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHH-HhcccCCCCcEEEEecCCCCCCCCe-e------eEec
Q 004891          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEKTSSQDRIIGAHFFSPAHVMPL-L------EIVR  460 (725)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~-l~~~~~~~~r~ig~h~~~p~~~~~l-v------eii~  460 (725)
                      |+||.|+-  ..-..+.++.+.+.+.++++|++.-.++...+ +...+....-+.|..++......|. +      .+.-
T Consensus        72 D~viv~vK--~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~~~~  149 (305)
T PRK05708         72 HRLLLACK--AYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGFTWL  149 (305)
T ss_pred             CEEEEECC--HHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEEEEE
Confidence            99999985  33345778889999999998887777776543 4444432222333333211111111 0      1112


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEEEcCCcchhhhhhhH
Q 004891          461 TERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFF  499 (725)
Q Consensus       461 ~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~  499 (725)
                      |.. +.+..+.+.+++...|-...+..|..+.+.+.+++
T Consensus       150 G~~-~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~  187 (305)
T PRK05708        150 GDP-RNPTAPAWLDDLREAGIPHEWTVDILTRLWRKLAL  187 (305)
T ss_pred             cCC-CCcchHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Confidence            221 22334556666666665555555666655555543

>PLN03139 formate dehydrogenase; Provisional

Probab=98.13  E-value=1.7e-05  Score=86.01  Aligned_cols=115  Identities=14%  Similarity=0.074  Sum_probs=77.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||.|.||..+|+.+...|++|++||++....+...           +.|             +....++ +.+++
T Consensus       200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~l~ell~~  255 (386)
T PLN03139        200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEK-----------ETG-------------AKFEEDLDAMLPK  255 (386)
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHh-----------hcC-------------ceecCCHHHHHhh
Confidence            6899999999999999999999999999998753211110           001             1222344 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhcccCC-CCcEEEEecC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSS-QDRIIGAHFF  447 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~~-~~r~ig~h~~  447 (725)
                      ||+|+.++|...+.+.-+-+++...++++++++..+-+-.+  ..+.+.+.. .-...++..|
T Consensus       256 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~  318 (386)
T PLN03139        256 CDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVW  318 (386)
T ss_pred             CCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCC
Confidence            99999999977776665556788889999988744333333  344444432 2233445543

>PRK07574 formate dehydrogenase; Provisional

Probab=98.12  E-value=2.1e-05  Score=85.46  Aligned_cols=115  Identities=9%  Similarity=-0.017  Sum_probs=76.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||.|.||..+|..+...|++|+.||++....+...           ..             .+....++ +.+++
T Consensus       193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~-----------~~-------------g~~~~~~l~ell~~  248 (385)
T PRK07574        193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQ-----------EL-------------GLTYHVSFDSLVSV  248 (385)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHh-----------hc-------------CceecCCHHHHhhc
Confidence            5899999999999999999999999999999863211100           00             11222334 56799


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhcccC-CCCcEEEEecC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFF  447 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~-~~~r~ig~h~~  447 (725)
                      ||+|+.++|...+...-+=++....++++++++..+-+-.+  ..+.+.+. ..-.-.++..|
T Consensus       249 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~  311 (385)
T PRK07574        249 CDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVW  311 (385)
T ss_pred             CCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecC
Confidence            99999999987776555446678889999988744433333  34444443 22233444433

>PRK15076 alpha-galactosidase; Provisional

Probab=98.11  E-value=1e-05  Score=89.66  Aligned_cols=77  Identities=21%  Similarity=0.264  Sum_probs=55.4

Q ss_pred             cceEEEEcCCCCcHHHHH--HHH----HCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccC
Q 004891          308 VRKVAVIGGGLMGSGIAT--AHI----LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~--~l~----~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (725)
                      |+||+|||+|.||.+.+.  .++    ..|.+|+++|+++++++.+...+++.+...   +         ...+++.++|
T Consensus         1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~---~---------~~~~i~~ttD   68 (431)
T PRK15076          1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESL---G---------ASAKITATTD   68 (431)
T ss_pred             CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhc---C---------CCeEEEEECC
Confidence            369999999999966555  443    246799999999999887655444443332   1         0135777788


Q ss_pred             c-ccccCCCEEEEecc
Q 004891          382 Y-SEFKDVDMVIEAVI  396 (725)
Q Consensus       382 ~-~~l~~aDlVIeavp  396 (725)
                      . +++++||+||+++-
T Consensus        69 ~~eal~dADfVv~ti~   84 (431)
T PRK15076         69 RREALQGADYVINAIQ   84 (431)
T ss_pred             HHHHhCCCCEEeEeee
Confidence            4 88999999999983

>PRK11778 putative inner membrane peptidase; Provisional

Probab=98.09  E-value=3.1e-05  Score=81.64  Aligned_cols=160  Identities=17%  Similarity=0.254  Sum_probs=98.7

Q ss_pred             cCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHH
Q 004891           12 NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV   90 (725)
Q Consensus        12 ~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~   90 (725)
                      .+.|++|.++.+ ..+. ...+.+++.+.+..+..+   .+|||+-..    .|+.+....             .....+
T Consensus        89 ~~~v~VI~~~G~I~~~~-~~~l~e~i~a~l~~A~~~---~aVvLridS----pGG~v~~s~-------------~a~~~l  147 (330)
T PRK11778         89 KPRLFVLDFKGDIDASE-VESLREEITAILAVAKPG---DEVLLRLES----PGGVVHGYG-------------LAASQL  147 (330)
T ss_pred             CCeEEEEEEEEEECCCc-chhhHHHHHHHHHhccCC---CeEEEEEeC----CCCchhHHH-------------HHHHHH
Confidence            357999999876 2221 123556666666665533   467775432    122221110             011123


Q ss_pred             HHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhh-----------------------
Q 004891           91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGT-----------------------  147 (725)
Q Consensus        91 ~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~-----------------------  147 (725)
                       .++....||+++.+.+.|..||+.++++||.++|.+.+.+|...+-... |.....                       
T Consensus       148 -~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~~-~~~~~lLeKlGI~~evi~aG~yK~a~~pf  225 (330)
T PRK11778        148 -QRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQI-PNFHRLLKKHDIDVELHTAGEYKRTLTLF  225 (330)
T ss_pred             -HHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeeec-cCHHHHHHHCCCceEEEEecCccCCCCCC
Confidence             3477789999999999999999999999999999998877655443221 111110                       


Q ss_pred             --------chHhh-----------hhCHH---HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHH
Q 004891          148 --------QRLPR-----------LVGLS---KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSR  194 (725)
Q Consensus       148 --------~~l~r-----------~vG~~---~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~  194 (725)
                              ..+..           .|-..   ...+-+.+|+.+++++|++.||||++-..+++...+.
T Consensus       226 ~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~i~~~~  294 (330)
T PRK11778        226 GENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLELM  294 (330)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHHHHHHH
Confidence                    00100           11111   1234466899999999999999999998777655444

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=98.07  E-value=7.6e-06  Score=86.83  Aligned_cols=98  Identities=24%  Similarity=0.281  Sum_probs=66.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      .||+|||+|.+|+++|..++..|.  +++++|++++.++.....+.+....      .       ....+..++++++++
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~------~-------~~~~v~~~~dy~~~~   70 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAF------L-------KNPKIEADKDYSVTA   70 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhcc------C-------CCCEEEECCCHHHhC
Confidence            599999999999999999999887  7999999987655433333221100      0       001355557888899


Q ss_pred             CCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEE
Q 004891          387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILA  420 (725)
Q Consensus       387 ~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~  420 (725)
                      +||+||.+.-.              +..+.+++.+++.++.+ +.+++
T Consensus        71 ~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p-~~~vi  117 (312)
T cd05293          71 NSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSP-NAILL  117 (312)
T ss_pred             CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEE
Confidence            99999997621              23345556667888754 45444

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=98.07  E-value=2.5e-05  Score=82.90  Aligned_cols=113  Identities=12%  Similarity=0.067  Sum_probs=77.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||.|.||..+|..+...|++|++||++.+.....                          .......++ +.+++
T Consensus       137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~--------------------------~~~~~~~~l~e~l~~  190 (312)
T PRK15469        137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGV--------------------------QSFAGREELSAFLSQ  190 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCc--------------------------eeecccccHHHHHhc
Confidence            689999999999999999999999999999876431100                          000011233 56799


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhcccCC-CCcEEEEecC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFF  447 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~-~~r~ig~h~~  447 (725)
                      ||+|+.++|...+.+.-+-++....++++++++...=+  +.-..+.+.+.. .-+..++..|
T Consensus       191 aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf  253 (312)
T PRK15469        191 TRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVF  253 (312)
T ss_pred             CCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCC
Confidence            99999999988887766667788889999988643323  333455555542 2233455544

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.07  E-value=5.3e-05  Score=75.46  Aligned_cols=136  Identities=20%  Similarity=0.212  Sum_probs=98.1

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEE
Q 004891           26 NALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA  103 (725)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia  103 (725)
                      ..++..+..++...|..++.++..+.|.|  .+.|      +++.                ....++ +.|..++.||++
T Consensus        42 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG------G~v~----------------~g~~I~-d~i~~~~~~v~t   98 (207)
T PRK12553         42 GQVDDASANDVMAQLLVLESIDPDRDITLYINSPG------GSVT----------------AGDAIY-DTIQFIRPDVQT   98 (207)
T ss_pred             ceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCC------CcHH----------------HHHHHH-HHHHhcCCCcEE
Confidence            45889999999999999987654444444  3433      3321                122445 668888999999


Q ss_pred             EEcccccchhhHHhhhcC--EEEeeCCceEeCccccc-CCCCCchhh------------------chHhhhh--CHHHHH
Q 004891          104 AVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTL-GVIPGFGGT------------------QRLPRLV--GLSKAI  160 (725)
Q Consensus       104 av~G~a~GgG~~lalacD--~~ia~~~a~~~~pe~~~-Gl~p~~g~~------------------~~l~r~v--G~~~a~  160 (725)
                      .+.|.|.+.|.-++++||  .|++.++++|.+..... |.  ..|-.                  ..+...-  ......
T Consensus        99 ~~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~--~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~  176 (207)
T PRK12553         99 VCTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGG--IRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIR  176 (207)
T ss_pred             EEEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCC--CccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence            999999999999999999  69999999998876543 21  11211                  1122222  345666


Q ss_pred             HHHHcCCCCCHHHHHHcCCcceecCc
Q 004891          161 EMMLLSKSITSEEGWKLGLIDAVVTS  186 (725)
Q Consensus       161 ~l~l~g~~~~a~eA~~~Glv~~vv~~  186 (725)
                      +++-.+..++|+||++.||||+|++.
T Consensus       177 ~~~~~~~~lta~EA~e~GliD~I~~~  202 (207)
T PRK12553        177 KDTDRDKWLTAEEAKDYGLVDQIITS  202 (207)
T ss_pred             HHHhcCccccHHHHHHcCCccEEcCc
Confidence            77778999999999999999999853

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=98.07  E-value=2.2e-05  Score=75.93  Aligned_cols=132  Identities=21%  Similarity=0.257  Sum_probs=96.2

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEE
Q 004891           28 LAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (725)
Q Consensus        28 l~~~~~~~l~~~l~~~~~~~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav  105 (725)
                      ++.....++...+..++.++..+.|+|  .+.|+      |+.                ....++ +.|...+.|+++.+
T Consensus        18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG------~v~----------------~~~~i~-~~l~~~~~~v~t~~   74 (171)
T cd07017          18 IDDEVANLIIAQLLYLESEDPKKPIYLYINSPGG------SVT----------------AGLAIY-DTMQYIKPPVSTIC   74 (171)
T ss_pred             EcHHHHHHHHHHHHHHHccCCCCceEEEEECCCC------CHH----------------HHHHHH-HHHHhcCCCEEEEE
Confidence            678889999999999998766565555  34333      221                122344 56778899999999


Q ss_pred             cccccchhhHHhhhcC--EEEeeCCceEeCcccccCCCCCchhh----------------chHhhh--hCHHHHHHHHHc
Q 004891          106 EGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGT----------------QRLPRL--VGLSKAIEMMLL  165 (725)
Q Consensus       106 ~G~a~GgG~~lalacD--~~ia~~~a~~~~pe~~~Gl~p~~g~~----------------~~l~r~--vG~~~a~~l~l~  165 (725)
                      .|.|.++|.-++++||  .|++.++++|.+.+...+.. +...-                ..+...  .......+++-.
T Consensus        75 ~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~-g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~  153 (171)
T cd07017          75 LGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAG-GQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDR  153 (171)
T ss_pred             EeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhC
Confidence            9999999999999999  89999999999887665542 21100                011121  233466677778


Q ss_pred             CCCCCHHHHHHcCCccee
Q 004891          166 SKSITSEEGWKLGLIDAV  183 (725)
Q Consensus       166 g~~~~a~eA~~~Glv~~v  183 (725)
                      +..++|+||+++|+||+|
T Consensus       154 ~~~lta~EA~e~GiiD~V  171 (171)
T cd07017         154 DRYMSAEEAKEYGLIDKI  171 (171)
T ss_pred             CccccHHHHHHcCCCccC
Confidence            999999999999999986

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.04  E-value=6.1e-06  Score=78.44  Aligned_cols=104  Identities=13%  Similarity=0.100  Sum_probs=66.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCC-CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      ++|+|||+|.||.+++..+.+.| .+|+++|++++..+...+.+..       .. +          ... ..+. +.++
T Consensus        20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~-------~~-~----------~~~-~~~~~~~~~   80 (155)
T cd01065          20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE-------LG-I----------AIA-YLDLEELLA   80 (155)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh-------cc-c----------cee-ecchhhccc
Confidence            68999999999999999999996 7899999999887664332110       00 0          011 1222 4478


Q ss_pred             CCCEEEEeccCChH-HHHHHHHHHHHhCCCCeEEEecCCCCChHHHhc
Q 004891          387 DVDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNTSTIDLNIVGE  433 (725)
Q Consensus       387 ~aDlVIeavpe~~~-~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~  433 (725)
                      ++|+||.|+|.+.. .....+.  ...+++++++++.++....+.+.+
T Consensus        81 ~~Dvvi~~~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~  126 (155)
T cd01065          81 EADLIINTTPVGMKPGDELPLP--PSLLKPGGVVYDVVYNPLETPLLK  126 (155)
T ss_pred             cCCEEEeCcCCCCCCCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHH
Confidence            99999999997653 1111121  123578888876555433334433

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK08605 D-lactate dehydrogenase; Validated

Probab=98.04  E-value=7.6e-06  Score=87.85  Aligned_cols=92  Identities=17%  Similarity=0.092  Sum_probs=65.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHH-HCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          309 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~-~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      ++|+|||+|.||.++|..++ ..|++|++||++.......                           .+...+++ +.++
T Consensus       147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~---------------------------~~~~~~~l~ell~  199 (332)
T PRK08605        147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAAT---------------------------YVDYKDTIEEAVE  199 (332)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHHh---------------------------hccccCCHHHHHH
Confidence            58999999999999999995 4688999999986432100                           01122344 5678


Q ss_pred             CCCEEEEeccCChHHHHHHH-HHHHHhCCCCeEEEecCCCCCh
Q 004891          387 DVDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTIDL  428 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~-~~l~~~~~~~~ii~s~tS~~~~  428 (725)
                      +||+|+.++|....... ++ .++.+.++++++++..+.+..+
T Consensus       200 ~aDvIvl~lP~t~~t~~-li~~~~l~~mk~gailIN~sRG~~v  241 (332)
T PRK08605        200 GADIVTLHMPATKYNHY-LFNADLFKHFKKGAVFVNCARGSLV  241 (332)
T ss_pred             hCCEEEEeCCCCcchhh-hcCHHHHhcCCCCcEEEECCCCccc
Confidence            99999999997666543 43 4567778999988755554443

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=98.02  E-value=0.0001  Score=75.69  Aligned_cols=152  Identities=13%  Similarity=0.021  Sum_probs=103.7

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-c-cc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S-EF  385 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~-~l  385 (725)
                      ..+|||||.|.||.-+|..+.++|+.|...||++  -+.+.+.+                      +.-. -+++ + +-
T Consensus        52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~y----------------------g~~~-ft~lhdlce  106 (480)
T KOG2380|consen   52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKY----------------------GSAK-FTLLHDLCE  106 (480)
T ss_pred             ceEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHh----------------------cccc-cccHHHHHh
Confidence            3689999999999999999999999999999986  22222111                      1111 1222 1 23


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHh-CCCCeEEEecCCCCC--hHHHhcccCCCCcEEEEecCCCCC-CC------Ce
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAH-VM------PL  455 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~-~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~p~~-~~------~l  455 (725)
                      +..|+|+.|+.  ..-...+++..-.. ++.++|+...+|...  .+...+.++..-.++..|++..|. ..      |+
T Consensus       107 rhpDvvLlcts--ilsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpf  184 (480)
T KOG2380|consen  107 RHPDVVLLCTS--ILSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPF  184 (480)
T ss_pred             cCCCEEEEEeh--hhhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCce
Confidence            67899999985  55555666554444 667899988777543  334445566666789999965553 11      44


Q ss_pred             eeEe---cCCCCCHHHHHHHHHHHHHcCCeeEEE
Q 004891          456 LEIV---RTERTSAQVILDLMTVGKIIKKVPVVV  486 (725)
Q Consensus       456 veii---~~~~t~~e~~~~~~~l~~~lGk~~v~v  486 (725)
                      |-+-   ......+|..+.+.+++...|...|.+
T Consensus       185 VydkvRig~~~~r~ercE~fleIf~cegckmVem  218 (480)
T KOG2380|consen  185 VYDKVRIGYAASRPERCEFFLEIFACEGCKMVEM  218 (480)
T ss_pred             EEEEeeccccccchHHHHHHHHHHHhcCCeEEEE
Confidence            3321   123446999999999999999998887

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.01  E-value=3.7e-05  Score=81.77  Aligned_cols=163  Identities=22%  Similarity=0.294  Sum_probs=102.2

Q ss_pred             cEEEEEeCCC-C--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHH
Q 004891           14 GVAIITLINP-P--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV   90 (725)
Q Consensus        14 ~v~~i~l~~p-~--~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~   90 (725)
                      .|++|.++.+ .  .+.+..--.+.+.+.|+.+..|+++++|||.=.    |-|+....             .....+.+
T Consensus        60 ~Iavi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~in----SPGG~v~a-------------s~~i~~~l  122 (317)
T COG0616          60 VIAVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRIN----SPGGSVVA-------------SELIARAL  122 (317)
T ss_pred             EEEEEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEE----CcCCchhH-------------HHHHHHHH
Confidence            5888888655 1  122223346677788888999999999999522    11222110             01122333


Q ss_pred             HHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhh-----------------------
Q 004891           91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGT-----------------------  147 (725)
Q Consensus        91 ~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~-----------------------  147 (725)
                       +++..-. ||++.|.+.|..||..++++||.+||++.|..|--.+-.+. |.....                       
T Consensus       123 -~~l~~~~-PV~v~v~~~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~~-~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~  199 (317)
T COG0616         123 -KRLRAKK-PVVVSVGGYAASGGYYIALAADKIVADPSSITGSIGVISGA-PNFEELLEKLGVEKEVITAGEYKDILSPF  199 (317)
T ss_pred             -HHHhhcC-CEEEEECCeecchhhhhhccCCEEEecCCceeeeceeEEec-CCHHHHHHhcCCceeeeeccccccccCcc
Confidence             3344444 99999999999999999999999999999987755444332 211100                       


Q ss_pred             --------chH-----------hhhh-----CHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHH
Q 004891          148 --------QRL-----------PRLV-----GLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLW  196 (725)
Q Consensus       148 --------~~l-----------~r~v-----G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~  196 (725)
                              ..+           ...|     .......-+.+|+.+++++|++.||||++-..++....+.+.
T Consensus       200 ~~~t~e~~~~~q~~~~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av~~~~~~  272 (317)
T COG0616         200 RPLTEEEREILQKEIDETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAVKDAAEL  272 (317)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHHHHHHHHh
Confidence                    000           0001     112223457799999999999999999998666554444443

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=97.99  E-value=9.5e-06  Score=86.26  Aligned_cols=97  Identities=24%  Similarity=0.325  Sum_probs=65.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCC--CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G--~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      +||+|||+|.+|.++|..++..|  .+|+++|++++.++.....+.+.       .... .      .....++++++++
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~-------~~~~-~------~~~i~~~d~~~l~   66 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHG-------TPFV-K------PVRIYAGDYADCK   66 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHcc-------cccc-C------CeEEeeCCHHHhC
Confidence            37999999999999999999999  58999999988765322111111       0000 0      0112245678899


Q ss_pred             CCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEE
Q 004891          387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCIL  419 (725)
Q Consensus       387 ~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii  419 (725)
                      +||+||.+++.              +..+.+++.+++.++.+.+.++
T Consensus        67 ~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giii  113 (308)
T cd05292          67 GADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILL  113 (308)
T ss_pred             CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence            99999999964              3445566677788877554444

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02602 lactate dehydrogenase

Probab=97.97  E-value=1.4e-05  Score=85.91  Aligned_cols=98  Identities=28%  Similarity=0.346  Sum_probs=66.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      .||+|||+|.+|+++|..++..|.  +++++|++++.++...-.+.+.....   +         . ..+..++++++++
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~---~---------~-~~i~~~~dy~~~~  104 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFL---P---------R-TKILASTDYAVTA  104 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcC---C---------C-CEEEeCCCHHHhC
Confidence            599999999999999999998887  79999999877654433333221100   0         0 1233345778899


Q ss_pred             CCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEE
Q 004891          387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILA  420 (725)
Q Consensus       387 ~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~  420 (725)
                      +||+||.+.-.              +..+.+++...+.++++. ++++
T Consensus       105 daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~-~ivi  151 (350)
T PLN02602        105 GSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPD-TILL  151 (350)
T ss_pred             CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEE
Confidence            99999998621              233455666677777654 4444

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=97.90  E-value=2.3e-05  Score=83.40  Aligned_cols=98  Identities=23%  Similarity=0.274  Sum_probs=67.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      +||+|||+|.+|+++|..++..|.  +++++|++++.++.....+.+.....  ..           -.+. ++++++++
T Consensus         7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~--~~-----------~~i~-~~~~~~~~   72 (315)
T PRK00066          7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFT--SP-----------TKIY-AGDYSDCK   72 (315)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcccc--CC-----------eEEE-eCCHHHhC
Confidence            599999999999999999999998  89999999887665444333322100  00           1232 45678899


Q ss_pred             CCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEe
Q 004891          387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILAT  421 (725)
Q Consensus       387 ~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s  421 (725)
                      +||+||.+.-.              +..+.+++..++.++.+ +++++.
T Consensus        73 ~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~-~~~viv  120 (315)
T PRK00066         73 DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGF-DGIFLV  120 (315)
T ss_pred             CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEE
Confidence            99999998631              33445566666776654 555543

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=97.90  E-value=9.7e-05  Score=72.83  Aligned_cols=140  Identities=20%  Similarity=0.222  Sum_probs=94.3

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEE
Q 004891           27 ALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (725)
Q Consensus        27 al~~~~~~~l~~~l~~~~~~~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (725)
                      .++..+...+.+.|..++..+..+.|.|  .+.|      +++.                ....++ +.|...+.||++.
T Consensus        31 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG------G~v~----------------ag~aI~-d~i~~~~~~V~t~   87 (197)
T PRK14512         31 EINKDLSELFQEKILLLEALDSKKPIFVYIDSEG------GDID----------------AGFAIF-NMIRFVKPKVFTI   87 (197)
T ss_pred             EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC------CCHH----------------HHHHHH-HHHHhCCCCEEEE
Confidence            4778889999999988876333343444  3433      3321                122445 6688899999999


Q ss_pred             EcccccchhhHHhhhcCE--EEeeCCceEeCcccccCCCCCchh-h---------------chHhhhhC--HHHHHHHHH
Q 004891          105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGG-T---------------QRLPRLVG--LSKAIEMML  164 (725)
Q Consensus       105 v~G~a~GgG~~lalacD~--~ia~~~a~~~~pe~~~Gl~p~~g~-~---------------~~l~r~vG--~~~a~~l~l  164 (725)
                      +.|.|.+.|.-++++||-  |++.++++|.+-...-++. |... .               ..+...-|  .....+++-
T Consensus        88 v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~-G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~  166 (197)
T PRK14512         88 GVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFK-GVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTD  166 (197)
T ss_pred             EEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccc-cCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhh
Confidence            999999999999999985  9999999886654432221 1111 0               00111222  355566677


Q ss_pred             cCCCCCHHHHHHcCCcceecCc-chHH
Q 004891          165 LSKSITSEEGWKLGLIDAVVTS-EELL  190 (725)
Q Consensus       165 ~g~~~~a~eA~~~Glv~~vv~~-~~l~  190 (725)
                      ....++|+||++.||||+|++. +++.
T Consensus       167 ~d~~lta~EA~~yGliD~I~~~~~~l~  193 (197)
T PRK14512        167 RDFWLDSSSAVKYGLVFEVVETRLELE  193 (197)
T ss_pred             cCcccCHHHHHHcCCccEeecCcHHhH
Confidence            7789999999999999999954 4443

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=97.90  E-value=4e-05  Score=72.51  Aligned_cols=108  Identities=19%  Similarity=0.155  Sum_probs=71.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCC-CCHHHHHHhhcCccccc---Cc-ccc
Q 004891          311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVL---DY-SEF  385 (725)
Q Consensus       311 IaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~-~~~~~~~~~~~~i~~~~---~~-~~l  385 (725)
                      |+|+|+|.||.-+|..|+++|++|+++++.+ .++...+           .|. ++...   ....+....   +. +..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~-----------~g~~~~~~~---~~~~~~~~~~~~~~~~~~   65 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKE-----------QGLTITGPD---GDETVQPPIVISAPSADA   65 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHH-----------HCEEEEETT---EEEEEEEEEEESSHGHHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhh-----------eeEEEEecc---cceecccccccCcchhcc
Confidence            7899999999999999999999999999998 6555321           110 00000   000011111   11 245


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHH-hccc
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV-GEKT  435 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l-~~~~  435 (725)
                      ..+|+||.|+.  .....++++.+.+++.+++.|++...++...+. .+..
T Consensus        66 ~~~D~viv~vK--a~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~  114 (151)
T PF02558_consen   66 GPYDLVIVAVK--AYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYF  114 (151)
T ss_dssp             STESEEEE-SS--GGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHS
T ss_pred             CCCcEEEEEec--ccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHc
Confidence            78999999996  444557888899999999877777777775544 4444

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=97.89  E-value=2.1e-05  Score=83.29  Aligned_cols=98  Identities=23%  Similarity=0.323  Sum_probs=68.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHCC--CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891          311 VAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (725)
Q Consensus       311 IaVIG~G~mG~~iA~~l~~~G--~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  388 (725)
                      |+|||+|.+|+++|..++..|  .+++++|++++.++.....+.+.....   .          ...+..+++++++++|
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~---~----------~~~i~~~~~~~~l~~a   67 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFL---A----------TGTIVRGGDYADAADA   67 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcccc---C----------CCeEEECCCHHHhCCC
Confidence            689999999999999999998  589999999988765544443322110   0          0133334567899999


Q ss_pred             CEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEec
Q 004891          389 DMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATN  422 (725)
Q Consensus       389 DlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~  422 (725)
                      |+||.++..              +..+.+++..++.+++ |+++++..
T Consensus        68 DiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~  114 (300)
T cd00300          68 DIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVV  114 (300)
T ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEc
Confidence            999999842              3345666667788887 55655433

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=97.89  E-value=5.1e-05  Score=86.54  Aligned_cols=130  Identities=15%  Similarity=0.063  Sum_probs=81.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||+|.||..+|..+...|++|++||+.... +...           +.+             +...+++ +.+++
T Consensus       139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~~~l~ell~~  193 (525)
T TIGR01327       139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAE-----------QLG-------------VELVDDLDELLAR  193 (525)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------CEEcCCHHHHHhh
Confidence            68999999999999999999999999999985321 1110           011             1222334 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC--ChHHHhcccCC-CCcEEEEecC--CCC-----CCCCeee
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSS-QDRIIGAHFF--SPA-----HVMPLLE  457 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~~-~~r~ig~h~~--~p~-----~~~~lve  457 (725)
                      ||+|+.++|...+.+.-+=.+..+.++++++++..+-+-  ....+.+.+.. .-...++..|  .|+     +..+-|.
T Consensus       194 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi  273 (525)
T TIGR01327       194 ADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVI  273 (525)
T ss_pred             CCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeE
Confidence            999999999776654444356667889999887444333  33355555442 2233445433  232     2334455


Q ss_pred             EecCCC
Q 004891          458 IVRTER  463 (725)
Q Consensus       458 ii~~~~  463 (725)
                      ++|+-.
T Consensus       274 ~TPHia  279 (525)
T TIGR01327       274 ATPHLG  279 (525)
T ss_pred             ECCCcc
Confidence            666443

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=97.88  E-value=7.2e-05  Score=74.50  Aligned_cols=151  Identities=15%  Similarity=0.123  Sum_probs=114.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC----cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~----~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (725)
                      .+|++||+|.|..+++..+.++|.    +++.+-.+......-          ...            ++.-.+.++.+.
T Consensus         1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~----------~~~------------~g~~~~~~n~~~   58 (267)
T KOG3124|consen    1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLM----------FEA------------LGVKTVFTNLEV   58 (267)
T ss_pred             CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhh----------hhc------------CCceeeechHHH
Confidence            379999999999999999999986    444444422221110          011            122233444677


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEe-cCCC
Q 004891          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTER  463 (725)
Q Consensus       385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii-~~~~  463 (725)
                      ++.+|++++++-  +.+...++.++...+..+.||+|..-+..++.+...+..+.|++...++.|..+.-...++ .+..
T Consensus        59 ~~~s~v~~~svK--p~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv~~~g~~  136 (267)
T KOG3124|consen   59 LQASDVVFLSVK--PQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGEGASVYAIGCH  136 (267)
T ss_pred             HhhccceeEeec--chhHHHHhhcCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhcCcEEEeeCCC
Confidence            889999999995  7777778877776667788999999999999998888877899999999999888777744 5777


Q ss_pred             CCHHHHHHHHHHHHHcCCee
Q 004891          464 TSAQVILDLMTVGKIIKKVP  483 (725)
Q Consensus       464 t~~e~~~~~~~l~~~lGk~~  483 (725)
                      ...+..+.+.+++...|...
T Consensus       137 ~~~~D~~l~~~ll~~vG~~~  156 (267)
T KOG3124|consen  137 ATNEDLELVEELLSAVGLCE  156 (267)
T ss_pred             cchhhHHHHHHHHHhcCcce
Confidence            78888899999999999643

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional

Probab=97.84  E-value=0.00033  Score=71.59  Aligned_cols=138  Identities=16%  Similarity=0.116  Sum_probs=89.8

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEE
Q 004891           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (725)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav  105 (725)
                      ..++++-++...+.++.+... .+-+|-|.-.++++. |.+-.          .......+.+.+ ..+.....|+|++|
T Consensus        77 G~~~~~g~rKa~R~~~lA~~~-~lPvV~lvDtpGa~~-g~~aE----------~~G~~~~ia~~~-~~~s~~~VP~IsVI  143 (256)
T PRK12319         77 GQPHPEGYRKALRLMKQAEKF-GRPVVTFINTAGAYP-GVGAE----------ERGQGEAIARNL-MEMSDLKVPIIAII  143 (256)
T ss_pred             CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CHhHH----------hccHHHHHHHHH-HHHhCCCCCEEEEE
Confidence            467788888888888888754 556666643333332 32211          011122333444 45778899999999


Q ss_pred             cccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 004891          106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT  185 (725)
Q Consensus       106 ~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~  185 (725)
                      -|.|.|||......||+++|.+++.++.-      .|.++....+...--...+.+.+    .+++.++.+.|+||+|+|
T Consensus       144 ~G~~~gGgA~a~~~~D~v~m~~~a~~~v~------~pe~~a~il~~~~~~a~~aa~~~----~~~a~~l~~~g~iD~ii~  213 (256)
T PRK12319        144 IGEGGSGGALALAVADQVWMLENTMYAVL------SPEGFASILWKDGSRATEAAELM----KITAGELLEMGVVDKVIP  213 (256)
T ss_pred             eCCcCcHHHHHhhcCCEEEEecCceEEEc------CHHHHHHHHhcCcccHHHHHHHc----CCCHHHHHHCCCCcEecC
Confidence            99999998888889999999999887642      13333322222211112222332    779999999999999996


Q ss_pred             c
Q 004891          186 S  186 (725)
Q Consensus       186 ~  186 (725)
                      +
T Consensus       214 e  214 (256)
T PRK12319        214 E  214 (256)
T ss_pred             C
Confidence            4

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit

Probab=97.83  E-value=0.00031  Score=69.33  Aligned_cols=138  Identities=18%  Similarity=0.205  Sum_probs=97.4

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEE
Q 004891           26 NALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA  103 (725)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia  103 (725)
                      ..++.++..++...|-.++.++..+-|.+  .+.|+      |+.                ....++ +.|...+.||..
T Consensus        37 ~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG------~v~----------------~g~aIy-d~m~~~~~~V~T   93 (200)
T CHL00028         37 QEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGG------SVI----------------SGLAIY-DTMQFVKPDVHT   93 (200)
T ss_pred             CeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCc------chh----------------hHHHHH-HHHHhcCCCEEE
Confidence            35899999999999999886544344433  44442      221                122455 668889999999


Q ss_pred             EEcccccchhhHHhhhcC--EEEeeCCceEeCcccccCCCCCchhh----------------chHhhhhC--HHHHHHHH
Q 004891          104 AVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGT----------------QRLPRLVG--LSKAIEMM  163 (725)
Q Consensus       104 av~G~a~GgG~~lalacD--~~ia~~~a~~~~pe~~~Gl~p~~g~~----------------~~l~r~vG--~~~a~~l~  163 (725)
                      .+-|.|.+.|.-|++++|  .|++.++++|.+-....|..-+...-                ..+...-|  .....+++
T Consensus        94 v~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~  173 (200)
T CHL00028         94 ICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDM  173 (200)
T ss_pred             EEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh
Confidence            999999999999999999  69999999998877655522111110                11122222  34555777


Q ss_pred             HcCCCCCHHHHHHcCCcceecCc
Q 004891          164 LLSKSITSEEGWKLGLIDAVVTS  186 (725)
Q Consensus       164 l~g~~~~a~eA~~~Glv~~vv~~  186 (725)
                      -....++|+||++.||||+|+.+
T Consensus       174 ~r~~~lta~EA~eyGliD~I~~~  196 (200)
T CHL00028        174 ERDVFMSATEAKAYGIVDLVAVN  196 (200)
T ss_pred             hcCccCCHHHHHHcCCCcEEeec
Confidence            78888999999999999999854

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=97.83  E-value=0.00097  Score=72.52  Aligned_cols=186  Identities=12%  Similarity=0.085  Sum_probs=109.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEE------EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVV------LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~------~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (725)
                      ++|+|||.|.+|...|..+...|++|+      ++|.+.+.-+++.           +.|             ....+..
T Consensus        37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~-----------~dG-------------F~v~~~~   92 (487)
T PRK05225         37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKAT-----------ENG-------------FKVGTYE   92 (487)
T ss_pred             CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHH-----------hcC-------------CccCCHH
Confidence            689999999999999999999999998      4444444433322           122             2222222


Q ss_pred             ccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCC----------CC
Q 004891          383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA----------HV  452 (725)
Q Consensus       383 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~----------~~  452 (725)
                      ++++.||+|+..+|+.  ....++.++.+.+++++++.-+ -++.+.......+..-.++-+-|-.|-          ..
T Consensus        93 Ea~~~ADvVviLlPDt--~q~~v~~~i~p~LK~Ga~L~fs-HGFni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~G  169 (487)
T PRK05225         93 ELIPQADLVINLTPDK--QHSDVVRAVQPLMKQGAALGYS-HGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFG  169 (487)
T ss_pred             HHHHhCCEEEEcCChH--HHHHHHHHHHhhCCCCCEEEec-CCceeeeCceeCCCCCcEEEECCCCCCchHHHHHhcCCC
Confidence            6789999999999966  3777789999999999988632 333333211111111223333332222          11


Q ss_pred             CCeeeEec-CCCCCHHHHHHHHHHHHHcCCee--EE-E--c-C-Ccchhhhhh-hHHHH-----HHHHHHHHcCCCHHHH
Q 004891          453 MPLLEIVR-TERTSAQVILDLMTVGKIIKKVP--VV-V--G-N-CTGFAVNRA-FFPYS-----QSARLLVSLGVDVFRI  518 (725)
Q Consensus       453 ~~lveii~-~~~t~~e~~~~~~~l~~~lGk~~--v~-v--~-d-~~Gfi~nRl-~~a~~-----~Ea~~l~~~Gv~~~dI  518 (725)
                      .|.+-.|- -...+..+.+.+..+...+|..-  |+ .  . + ..-+...|. +...+     ...-.++++|.+|++-
T Consensus       170 vp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A  249 (487)
T PRK05225        170 VPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYA  249 (487)
T ss_pred             ceEEEEEeecCCCCchHHHHHHHHHHHhCCCccceeecchHHHHhhcchhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHH
Confidence            12222222 13456778899999999999762  22 1  1 1 111222332 22222     1234678889998886


Q ss_pred             HHH
Q 004891          519 DSA  521 (725)
Q Consensus       519 D~~  521 (725)
                      -..
T Consensus       250 ~k~  252 (487)
T PRK05225        250 EKL  252 (487)
T ss_pred             HHH
Confidence            543

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=97.81  E-value=9.1e-05  Score=78.78  Aligned_cols=112  Identities=17%  Similarity=0.122  Sum_probs=75.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeC-ChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEV-NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~-~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      ++|||||+|.+|+.+|..+..-|++|.+||+ .+...+..                          .......++ +.++
T Consensus       143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~--------------------------~~~~~~~~Ld~lL~  196 (324)
T COG0111         143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV--------------------------DGVVGVDSLDELLA  196 (324)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc--------------------------ccceecccHHHHHh
Confidence            6899999999999999999999999999999 43321110                          011223344 5679


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC-C--CChHHHhcccCCC-CcEEEEecC
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTSSQ-DRIIGAHFF  447 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~~~-~r~ig~h~~  447 (725)
                      .||+|+..+|...+.+.-+=.+....++++++++ |++ +  +....+.+.+... -+-.++..|
T Consensus       197 ~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailI-N~aRG~vVde~aL~~AL~~G~i~gA~lDVf  260 (324)
T COG0111         197 EADILTLHLPLTPETRGLINAEELAKMKPGAILI-NAARGGVVDEDALLAALDSGKIAGAALDVF  260 (324)
T ss_pred             hCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEE-ECCCcceecHHHHHHHHHcCCcceEEecCC
Confidence            9999999999777754444456677789999775 565 2  3333555555432 233444444

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.81  E-value=1.7e-05  Score=77.36  Aligned_cols=114  Identities=14%  Similarity=0.095  Sum_probs=72.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||.|.+|..+|..+..-|.+|++||++........           ..             ... ..++ +.++.
T Consensus        37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~-----------~~-------------~~~-~~~l~ell~~   91 (178)
T PF02826_consen   37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGAD-----------EF-------------GVE-YVSLDELLAQ   91 (178)
T ss_dssp             SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHH-----------HT-------------TEE-ESSHHHHHHH
T ss_pred             CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcc-----------cc-------------cce-eeehhhhcch
Confidence            6899999999999999999999999999999987644111           00             111 2344 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhcccCCC-CcEEEEecC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQ-DRIIGAHFF  447 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~~-~r~ig~h~~  447 (725)
                      ||+|+.++|-..+...-+=++....++++++++..+-+  +.-..+.+.+... -.-.++..|
T Consensus        92 aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~  154 (178)
T PF02826_consen   92 ADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVF  154 (178)
T ss_dssp             -SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-
T ss_pred             hhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECC
Confidence            99999999966554333335667778999988754433  3333455555432 233444444

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.80  E-value=5.8e-05  Score=73.93  Aligned_cols=134  Identities=18%  Similarity=0.265  Sum_probs=91.5

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCce--EEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEE
Q 004891           28 LAIPIVAGLKDKFEEATSRDDVK--AIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (725)
Q Consensus        28 l~~~~~~~l~~~l~~~~~~~~v~--~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav  105 (725)
                      ++.++...+.+.|..++.++..+  .|.|.+.      |+|+..                ...++ +.|..++.|+++.+
T Consensus        25 I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSp------GG~v~~----------------g~~i~-~~i~~~~~~v~t~~   81 (182)
T PF00574_consen   25 IDEESANRLISQLLYLENEDKNKPINIYINSP------GGDVDA----------------GLAIY-DAIRSSKAPVTTVV   81 (182)
T ss_dssp             BSHHHHHHHHHHHHHHHHHTSSSEEEEEEEEC------EBCHHH----------------HHHHH-HHHHHSSSEEEEEE
T ss_pred             cCHHHHHHHHHHHHHHhccCCCceEEEEEcCC------CCccHH----------------HHHHH-HHHHhcCCCeEEEE
Confidence            88899999999888775333222  2333443      344321                23455 67889999999999


Q ss_pred             cccccchhhHHhhhcCE--EEeeCCceEeCcccccCCCCCchhh----------------chHhhh--hCHHHHHHHHHc
Q 004891          106 EGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGT----------------QRLPRL--VGLSKAIEMMLL  165 (725)
Q Consensus       106 ~G~a~GgG~~lalacD~--~ia~~~a~~~~pe~~~Gl~p~~g~~----------------~~l~r~--vG~~~a~~l~l~  165 (725)
                      .|.|.+.|.-++++||.  |++.+.+.|.+-+...+... ....                ..+...  .......+++-.
T Consensus        82 ~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g-~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~  160 (182)
T PF00574_consen   82 LGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGG-NASELREQAKELEKLNERIANIYAERTGLSKEEIEELMDR  160 (182)
T ss_dssp             EEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEE-EHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCSS
T ss_pred             eCccccceehhhhcCCcCceeeeecCEEEeecceeeccc-ccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhC
Confidence            99999999999999999  89999999999888655422 1111                111111  233444566666


Q ss_pred             CCCCCHHHHHHcCCcceecC
Q 004891          166 SKSITSEEGWKLGLIDAVVT  185 (725)
Q Consensus       166 g~~~~a~eA~~~Glv~~vv~  185 (725)
                      ...++|+||++.|+||+|+.
T Consensus       161 ~~~l~a~EA~~~GiiD~I~~  180 (182)
T PF00574_consen  161 DTWLSAEEALEYGIIDEIIE  180 (182)
T ss_dssp             TEEEEHHHHHHHTSSSEEES
T ss_pred             CccccHHHHHHcCCCCEecc
Confidence            77889999999999999974

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=97.78  E-value=4.4e-05  Score=79.77  Aligned_cols=102  Identities=26%  Similarity=0.347  Sum_probs=66.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      +||+|||+|.+|+++|..|...++  +++++|++++.++--...+.+.....            .....+..+.++++++
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~------------~~~~~i~~~~~y~~~~   68 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPL------------GSDVKITGDGDYEDLK   68 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhc------------cCceEEecCCChhhhc
Confidence            489999999999999999987754  89999999665443221121111000            0001233334589999


Q ss_pred             CCCEEEEec--c------------CChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891          387 DVDMVIEAV--I------------ESVPLKQKIFSELEKACPPHCILATNT  423 (725)
Q Consensus       387 ~aDlVIeav--p------------e~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (725)
                      ++|+|+.+.  |            .+..+.+++.+++.+.++ +.++...|
T Consensus        69 ~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivlVvt  118 (313)
T COG0039          69 GADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVLVVT  118 (313)
T ss_pred             CCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEEEec
Confidence            999999987  3            245566777777888876 55544333

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=97.78  E-value=9.1e-05  Score=84.53  Aligned_cols=129  Identities=14%  Similarity=0.088  Sum_probs=82.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||+|.||..+|..+...|++|++||++... +...           ..+             +... ++ +.+++
T Consensus       141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~-~l~ell~~  194 (526)
T PRK13581        141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAA-----------QLG-------------VELV-SLDELLAR  194 (526)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------CEEE-cHHHHHhh
Confidence            68999999999999999999999999999986422 1110           011             1122 33 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhcccCC-CCcEEEEecC--CCC-----CCCCeee
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSS-QDRIIGAHFF--SPA-----HVMPLLE  457 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~-~~r~ig~h~~--~p~-----~~~~lve  457 (725)
                      ||+|+.++|...+.+.-+-.+..+.++++++++..+-+-.  -..+.+.+.. .-.-.++..|  .|+     +..+-|.
T Consensus       195 aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi  274 (526)
T PRK13581        195 ADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVV  274 (526)
T ss_pred             CCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCee
Confidence            9999999997766555444667788999998874443333  3355555432 2233445443  232     2334455


Q ss_pred             EecCCC
Q 004891          458 IVRTER  463 (725)
Q Consensus       458 ii~~~~  463 (725)
                      ++|+-.
T Consensus       275 lTPHia  280 (526)
T PRK13581        275 VTPHLG  280 (526)
T ss_pred             EcCccc
Confidence            666443

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP

Probab=97.76  E-value=0.00035  Score=68.71  Aligned_cols=136  Identities=18%  Similarity=0.168  Sum_probs=92.4

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEE
Q 004891           27 ALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (725)
Q Consensus        27 al~~~~~~~l~~~l~~~~~~~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (725)
                      .++..+..++...|..++.++..+-|+|  .+.      |+|+.                ....++ +.|..++.|+...
T Consensus        34 ~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSp------GG~v~----------------~g~~I~-d~l~~~~~~v~t~   90 (191)
T TIGR00493        34 EVNDSVANLIVAQLLFLEAEDPEKDIYLYINSP------GGSIT----------------AGLAIY-DTMQFIKPDVSTI   90 (191)
T ss_pred             EEChHHHHHHHHHHHHhhccCCCCCEEEEEECC------CCCHH----------------HHHHHH-HHHHhcCCCEEEE
Confidence            3677788888888888887654444444  333      33321                122445 5677777888888


Q ss_pred             EcccccchhhHHhhhcC--EEEeeCCceEeCcccccCCCCCchhh---------------chHhhhhC--HHHHHHHHHc
Q 004891          105 VEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGT---------------QRLPRLVG--LSKAIEMMLL  165 (725)
Q Consensus       105 v~G~a~GgG~~lalacD--~~ia~~~a~~~~pe~~~Gl~p~~g~~---------------~~l~r~vG--~~~a~~l~l~  165 (725)
                      +-|.|.+.|.-+++++|  .|++.++++|.+....-|......-.               ..+.+.-|  .....+++-.
T Consensus        91 ~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~  170 (191)
T TIGR00493        91 CIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTER  170 (191)
T ss_pred             EEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhC
Confidence            89999999998888665  69999999998866543321111101               11222323  3566677788


Q ss_pred             CCCCCHHHHHHcCCcceecC
Q 004891          166 SKSITSEEGWKLGLIDAVVT  185 (725)
Q Consensus       166 g~~~~a~eA~~~Glv~~vv~  185 (725)
                      +..++|+||++.||||+|+.
T Consensus       171 ~~~lta~EA~~~GliD~ii~  190 (191)
T TIGR00493       171 DFFMSAEEAKEYGLIDSVLT  190 (191)
T ss_pred             CccCcHHHHHHcCCccEEec
Confidence            89999999999999999974

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=97.76  E-value=5.8e-05  Score=80.24  Aligned_cols=108  Identities=23%  Similarity=0.217  Sum_probs=69.4

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCC--cEEEEeCCh--HHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcc
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~--e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (725)
                      +||+|||+ |..|..+|..++..|+  +|+++|+++  +.++.....+.   +.+...+.         ..++..+++++
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~---d~~~~~~~---------~~~i~~~~d~~   68 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIY---DALAAAGI---------DAEIKISSDLS   68 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhh---hchhccCC---------CcEEEECCCHH
Confidence            48999998 9999999999999987  499999964  33332221111   11111110         01355556678


Q ss_pred             cccCCCEEEEeccC------C-h-------HHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 004891          384 EFKDVDMVIEAVIE------S-V-------PLKQKIFSELEKACPPHCILATNTSTIDLN  429 (725)
Q Consensus       384 ~l~~aDlVIeavpe------~-~-------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~  429 (725)
                      ++++||+||.|+.-      + .       .+.+++...|.+.++ +++++..++..++.
T Consensus        69 ~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npvd~~  127 (309)
T cd05294          69 DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPVDVM  127 (309)
T ss_pred             HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHHH
Confidence            89999999999841      1 1       445566667777764 66666666665543

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PLN02928 oxidoreductase family protein

Probab=97.74  E-value=0.00013  Score=78.80  Aligned_cols=126  Identities=12%  Similarity=0.086  Sum_probs=75.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||+|.||..+|..+...|++|++||++........      +.  ......     ...........++ +.+++
T Consensus       160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~------~~--~~~~~~-----~~~~~~~~~~~~L~ell~~  226 (347)
T PLN02928        160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDG------LL--IPNGDV-----DDLVDEKGGHEDIYEFAGE  226 (347)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhh------hc--cccccc-----cccccccCcccCHHHHHhh
Confidence            6899999999999999999999999999999743211100      00  000000     0000000012234 56799


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhcccCC-CCcEEEEecC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFF  447 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~-~~r~ig~h~~  447 (725)
                      ||+|+.++|-..+...-+=.+....++++++|+..+-+  +.-..+.+.+.. .-...++..|
T Consensus       227 aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~  289 (347)
T PLN02928        227 ADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVA  289 (347)
T ss_pred             CCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccC
Confidence            99999999977665444445677788999988744433  333455555542 2233455544

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=97.72  E-value=8.5e-05  Score=78.65  Aligned_cols=100  Identities=17%  Similarity=0.268  Sum_probs=64.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          310 KVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      ||+|||+|.+|+++|..++..|.  +++++|++++.++.....+.+.........           -.+. +.+++++++
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~-----------~~i~-~~~y~~~~~   68 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTN-----------TKIR-AGDYDDCAD   68 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCC-----------EEEE-ECCHHHhCC
Confidence            79999999999999999999887  799999998775543322222110000000           0232 457799999


Q ss_pred             CCEEEEeccC------C----------hHHHHHHHHHHHHhCCCCeEEEec
Q 004891          388 VDMVIEAVIE------S----------VPLKQKIFSELEKACPPHCILATN  422 (725)
Q Consensus       388 aDlVIeavpe------~----------~~~k~~v~~~l~~~~~~~~ii~s~  422 (725)
                      ||+||.+.-.      +          ..+.+++..++.++. |+++++..
T Consensus        69 aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~-p~~i~ivv  118 (307)
T cd05290          69 ADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVT-KEAVIILI  118 (307)
T ss_pred             CCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEe
Confidence            9999998731      1          123444445566666 55655443

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional

Probab=97.71  E-value=0.0011  Score=70.91  Aligned_cols=138  Identities=16%  Similarity=0.099  Sum_probs=88.5

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEE
Q 004891           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (725)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav  105 (725)
                      .+++++-++...+.++.++.. .+-+|-|--.++++ .|.+-.+.          .....+.+.+ ..+..+..|+|++|
T Consensus       200 G~~~peGyRKAlR~mklAekf-~lPIVtLVDTpGA~-pG~~AEe~----------Gqa~aIAr~l-~ams~l~VPiISVV  266 (431)
T PLN03230        200 AMPQPNGYRKALRFMRHAEKF-GFPILTFVDTPGAY-AGIKAEEL----------GQGEAIAFNL-REMFGLRVPIIATV  266 (431)
T ss_pred             CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcC-CCHHHHHH----------hHHHHHHHHH-HHHhcCCCCEEEEE
Confidence            467899999999988888764 45555554333333 33322211          1112233444 45788999999999


Q ss_pred             cccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 004891          106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT  185 (725)
Q Consensus       106 ~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~  185 (725)
                      -|.+.+||.....+||+++|.+++.++.-      .|.++.+..+...--...|.+    .-.++|.++++.|+||+|+|
T Consensus       267 iGeGgSGGAlalg~aD~VlMle~A~ysVi------sPEgaAsILwkd~~~A~eAAe----alkitA~dL~~~GiID~II~  336 (431)
T PLN03230        267 IGEGGSGGALAIGCGNRMLMMENAVYYVA------SPEACAAILWKSAAAAPKAAE----ALRITAAELVKLGVVDEIVP  336 (431)
T ss_pred             eCCCCcHHHHHhhcCCEEEEecCCEEEec------CHHHHHHHHhccccchHHHHH----HcCCCHHHHHhCCCCeEecc
Confidence            99996666555557899999999876642      244444443333222222333    33899999999999999996


Q ss_pred             c
Q 004891          186 S  186 (725)
Q Consensus       186 ~  186 (725)
                      .
T Consensus       337 E  337 (431)
T PLN03230        337 E  337 (431)
T ss_pred             C
Confidence            3

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.69  E-value=6.6e-05  Score=78.16  Aligned_cols=71  Identities=17%  Similarity=0.222  Sum_probs=55.9

Q ss_pred             ceEEEEcCC-CCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G-~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      ++|+|||.| .||.+||..|.++|+.|++|++....++                                     +.+++
T Consensus       160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~-------------------------------------e~~~~  202 (301)
T PRK14194        160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAK-------------------------------------ALCRQ  202 (301)
T ss_pred             CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHH-------------------------------------HHHhc
Confidence            689999996 9999999999999999999987643211                                     34578


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (725)
                      ||+||.|++....+...+       +++++++++.+
T Consensus       203 ADIVIsavg~~~~v~~~~-------ik~GaiVIDvg  231 (301)
T PRK14194        203 ADIVVAAVGRPRLIDADW-------LKPGAVVIDVG  231 (301)
T ss_pred             CCEEEEecCChhcccHhh-------ccCCcEEEEec
Confidence            999999998665444333       78999988654

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.67  E-value=7.5e-05  Score=78.37  Aligned_cols=89  Identities=20%  Similarity=0.236  Sum_probs=61.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||+|.||.++|..|...|.+|++++++++..+.+.           +.+. .         .+. ..++ +.+++
T Consensus       152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~-----------~~g~-~---------~~~-~~~l~~~l~~  209 (287)
T TIGR02853       152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARIT-----------EMGL-I---------PFP-LNKLEEKVAE  209 (287)
T ss_pred             CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HCCC-e---------eec-HHHHHHHhcc
Confidence            6899999999999999999999999999999987654431           1111 0         001 1122 45689


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  424 (725)
                      +|+||.++|..+- .    .+..+.+++++++++.+|
T Consensus       210 aDiVint~P~~ii-~----~~~l~~~k~~aliIDlas  241 (287)
T TIGR02853       210 IDIVINTIPALVL-T----ADVLSKLPKHAVIIDLAS  241 (287)
T ss_pred             CCEEEECCChHHh-C----HHHHhcCCCCeEEEEeCc
Confidence            9999999984321 1    234455678887775544

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK05442 malate dehydrogenase; Provisional

Probab=97.67  E-value=6.7e-05  Score=79.99  Aligned_cols=104  Identities=15%  Similarity=0.144  Sum_probs=67.0

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCC-------cEEEEeCChH--HHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcc
Q 004891          308 VRKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSE--YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK  377 (725)
Q Consensus       308 ~~kIaVIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~e--~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~  377 (725)
                      ..||+|||+ |.+|+++|..+...|.       +++++|++++  .++...-.+.+....... .           -.++
T Consensus         4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~-~-----------~~i~   71 (326)
T PRK05442          4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLA-G-----------VVIT   71 (326)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcC-C-----------cEEe
Confidence            469999998 9999999999988765       7999999653  232211112111100000 0           0122


Q ss_pred             cccCcccccCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891          378 GVLDYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTS  424 (725)
Q Consensus       378 ~~~~~~~l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS  424 (725)
                       +.+++++++||+||.+.-              .+..+.+++..+|.++.+++++++..|.
T Consensus        72 -~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN  131 (326)
T PRK05442         72 -DDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGN  131 (326)
T ss_pred             -cChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence             456699999999998862              1334566667778888877887765553

>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily

Probab=97.66  E-value=0.00063  Score=68.70  Aligned_cols=97  Identities=13%  Similarity=0.223  Sum_probs=75.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEE
Q 004891           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (725)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (725)
                      .+.++.+..+++.++++....+..+ .++|..-      |+++..                ...+. +.|.+++.|+++.
T Consensus        69 ~~~I~i~dse~v~raI~~~~~~~~I-dLii~Tp------GG~v~A----------------A~~I~-~~l~~~~~~v~v~  124 (285)
T PF01972_consen   69 YRYIDIDDSEFVLRAIREAPKDKPI-DLIIHTP------GGLVDA----------------AEQIA-RALREHPAKVTVI  124 (285)
T ss_pred             ceeEcHhhHHHHHHHHHhcCCCCce-EEEEECC------CCcHHH----------------HHHHH-HHHHhCCCCEEEE
Confidence            4678888999999999888776554 3334322      333321                11333 5678899999999


Q ss_pred             EcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCch
Q 004891          105 VEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFG  145 (725)
Q Consensus       105 v~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g  145 (725)
                      |+..|+.+|.-++|+||-++|.+.+.+|--...+|-.|..+
T Consensus       125 VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~s  165 (285)
T PF01972_consen  125 VPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAAS  165 (285)
T ss_pred             ECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChHH
Confidence            99999999999999999999999999999999999888644

The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane

>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit

Probab=97.64  E-value=0.0014  Score=68.62  Aligned_cols=137  Identities=17%  Similarity=0.090  Sum_probs=88.1

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEE
Q 004891           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (725)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav  105 (725)
                      -+++++-++...+.++.++.. .+-+|-|--.+++++ |.+-.+.          .....+.+.+ ..+.....|+|++|
T Consensus       130 G~~~p~g~rKa~R~m~lA~~f-~iPvVtlvDTpGa~~-g~~aE~~----------G~~~aia~~l-~a~s~~~VP~IsVV  196 (316)
T TIGR00513       130 GMPAPEGYRKALRLMKMAERF-KMPIITFIDTPGAYP-GIGAEER----------GQSEAIARNL-REMARLGVPVICTV  196 (316)
T ss_pred             CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCCCC-CHHHHHH----------HHHHHHHHHH-HHHHcCCCCEEEEE
Confidence            467788899998888888754 455666643333333 3322111          0112233444 45778899999999


Q ss_pred             cccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 004891          106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT  185 (725)
Q Consensus       106 ~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~  185 (725)
                      -|.|.|||..-...||+++|.+++.++.       +++-|++..|-+-  ..++.+..- -..++|.++++.|+||+|+|
T Consensus       197 iGeggsGGAla~~~aD~v~m~~~a~~sV-------isPEg~a~Il~kd--~~~a~~aae-~~~~ta~~l~~~G~iD~II~  266 (316)
T TIGR00513       197 IGEGGSGGALAIGVGDKVNMLEYSTYSV-------ISPEGCAAILWKD--ASKAPKAAE-AMKITAPDLKELGLIDSIIP  266 (316)
T ss_pred             ecccccHHHhhhccCCEEEEecCceEEe-------cCHHHHHHHhccc--hhhHHHHHH-HccCCHHHHHHCCCCeEecc
Confidence            9999888775555799999999987763       3333333333322  122222222 36778999999999999996

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional

Probab=97.63  E-value=0.0021  Score=67.35  Aligned_cols=137  Identities=13%  Similarity=0.084  Sum_probs=89.7

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEE
Q 004891           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (725)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav  105 (725)
                      ..++++-++...+.++.++.. .+-+|-|--.+++++ |.+-.+.          .....+.+.+ ..+.....|+|++|
T Consensus       133 G~~~p~g~rKa~Rlm~lA~~f-~lPIItlvDTpGA~~-G~~AE~~----------G~~~aiar~l-~~~a~~~VP~IsVV  199 (322)
T CHL00198        133 GMPSPGGYRKALRLMKHANKF-GLPILTFIDTPGAWA-GVKAEKL----------GQGEAIAVNL-REMFSFEVPIICTI  199 (322)
T ss_pred             CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcCc-CHHHHHH----------hHHHHHHHHH-HHHHcCCCCEEEEE
Confidence            467788999999988888764 455555543333443 3221110          0112233344 34678999999999


Q ss_pred             cccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 004891          106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT  185 (725)
Q Consensus       106 ~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~  185 (725)
                      -|.|.|||.-....||+++|.+++.|+.-      .|.++.+..+..   ..+|.+ +...-+++|++.++.|+||+|+|
T Consensus       200 iGeggsGGAlal~~aD~V~m~e~a~~sVi------sPEg~a~Il~~d---~~~a~~-aA~~~~ita~dL~~~giiD~ii~  269 (322)
T CHL00198        200 IGEGGSGGALGIGIGDSIMMLEYAVYTVA------TPEACAAILWKD---SKKSLD-AAEALKITSEDLKVLGIIDEIIP  269 (322)
T ss_pred             eCcccHHHHHhhhcCCeEEEeCCeEEEec------CHHHHHHHHhcc---hhhHHH-HHHHcCCCHHHHHhCCCCeEecc
Confidence            99998888655556999999999887642      244444333332   233333 34456799999999999999996

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=97.63  E-value=8.4e-05  Score=76.76  Aligned_cols=117  Identities=19%  Similarity=0.168  Sum_probs=79.8

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHC--CC-----cEEEEeCChHHHHHHHHHHHHHHHhhHHcC-CCCHHHHHHhhcCcc
Q 004891          306 RGVRKVAVIGGGLMGSGIATAHILN--NI-----YVVLKEVNSEYLLKGIKTIEANVRGLVTRG-KLTQDKANNALKMLK  377 (725)
Q Consensus       306 ~~~~kIaVIG~G~mG~~iA~~l~~~--G~-----~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g-~~~~~~~~~~~~~i~  377 (725)
                      +.-.||+|||.|++|++||..+.+.  ++     +|.+|-..++.-.. ...+.+.+.+..+.- ++..   .....++.
T Consensus        19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~-~~~L~eiIN~~heN~KYlpg---~~lP~Nvv   94 (372)
T KOG2711|consen   19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGE-AEKLTEIINSRHENVKYLPG---IKLPENVV   94 (372)
T ss_pred             cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCCh-hHHHHHHhccccccccccCC---ccCCCCeE
Confidence            3447999999999999999988764  22     67787665543332 111222222222211 1110   11224566


Q ss_pred             cccCc-ccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh
Q 004891          378 GVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL  428 (725)
Q Consensus       378 ~~~~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~  428 (725)
                      .++|+ +++.+||++|..+|  .+....++++|..++++++..+|.+.++..
T Consensus        95 Av~dl~ea~~dADilvf~vP--hQf~~~ic~~l~g~vk~~~~aISL~KG~e~  144 (372)
T KOG2711|consen   95 AVPDLVEAAKDADILVFVVP--HQFIPRICEQLKGYVKPGATAISLIKGVEV  144 (372)
T ss_pred             ecchHHHHhccCCEEEEeCC--hhhHHHHHHHHhcccCCCCeEEEeecceec
Confidence            67777 78899999999999  888899999999999999998887777654

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=97.62  E-value=0.00013  Score=68.63  Aligned_cols=88  Identities=23%  Similarity=0.248  Sum_probs=56.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  388 (725)
                      +++.|+|.|..|+++|+.|...|.+|+++|++|-++-++.           .             +..+..+-.++++.+
T Consensus        24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~-----------~-------------dGf~v~~~~~a~~~a   79 (162)
T PF00670_consen   24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAA-----------M-------------DGFEVMTLEEALRDA   79 (162)
T ss_dssp             SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHH-----------H-------------TT-EEE-HHHHTTT-
T ss_pred             CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhh-----------h-------------cCcEecCHHHHHhhC
Confidence            5799999999999999999999999999999997654432           1             122222222678899


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (725)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  424 (725)
                      |++|.+.....-+..+-|+    .+++++|+++.++
T Consensus        80 di~vtaTG~~~vi~~e~~~----~mkdgail~n~Gh  111 (162)
T PF00670_consen   80 DIFVTATGNKDVITGEHFR----QMKDGAILANAGH  111 (162)
T ss_dssp             SEEEE-SSSSSSB-HHHHH----HS-TTEEEEESSS
T ss_pred             CEEEECCCCccccCHHHHH----HhcCCeEEeccCc
Confidence            9999988654444444444    4789999986555

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=97.60  E-value=0.00012  Score=77.94  Aligned_cols=103  Identities=17%  Similarity=0.152  Sum_probs=67.5

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCC-------cEEEEeCCh--HHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccc
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG  378 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~--e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~  378 (725)
                      -||+|||+ |.+|+++|..++..|.       +++++|+++  +.++.-...+.+....... +           -.+. 
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~-~-----------~~i~-   70 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLA-G-----------VVAT-   70 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccC-C-----------cEEe-
Confidence            58999998 9999999999998886       799999965  3233221112111100000 0           0122 


Q ss_pred             ccCcccccCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891          379 VLDYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTS  424 (725)
Q Consensus       379 ~~~~~~l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS  424 (725)
                      ..+++++++||+||.+.-              .+..+.+++..++.++.+++++++..|.
T Consensus        71 ~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN  130 (323)
T TIGR01759        71 TDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGN  130 (323)
T ss_pred             cChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence            456799999999998862              1344566777788888876787765543

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated

Probab=97.59  E-value=0.002  Score=67.62  Aligned_cols=137  Identities=18%  Similarity=0.122  Sum_probs=91.0

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEE
Q 004891           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (725)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav  105 (725)
                      -+++++-++...+.++.++.. .+-+|-|.-.+++++ |.+-.+          ......+.+.+ ..+.....|+|++|
T Consensus       130 G~~~peg~rKa~R~m~lA~~f-~lPIVtlvDTpGa~~-G~~aE~----------~G~~~aia~~l-~~~a~~~VP~IsVI  196 (319)
T PRK05724        130 GMPRPEGYRKALRLMKMAEKF-GLPIITFIDTPGAYP-GIGAEE----------RGQSEAIARNL-REMARLKVPIICTV  196 (319)
T ss_pred             CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCCCC-CHHHHh----------ccHHHHHHHHH-HHHhCCCCCEEEEE
Confidence            467888899888888888754 566666654334433 332211          01122333445 55788999999999


Q ss_pred             cccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 004891          106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT  185 (725)
Q Consensus       106 ~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~  185 (725)
                      -|.|.|||..-...||+++|.+++.++.       +++-|++..|-+-  ..++.+..- ...+++.++++.|+||+|+|
T Consensus       197 iGeg~sGGAla~~~aD~v~m~~~A~~sv-------isPEg~a~Il~~~--~~~a~~aae-~~~ita~~l~~~g~iD~II~  266 (319)
T PRK05724        197 IGEGGSGGALAIGVGDRVLMLEYSTYSV-------ISPEGCASILWKD--ASKAPEAAE-AMKITAQDLKELGIIDEIIP  266 (319)
T ss_pred             eCCccHHHHHHHhccCeeeeecCceEee-------cCHHHHHHHHhcC--chhHHHHHH-HcCCCHHHHHHCCCceEecc
Confidence            9999888875555699999998887753       3434444444332  233433333 56689999999999999996

>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification

Probab=97.58  E-value=8.4e-05  Score=70.60  Aligned_cols=102  Identities=27%  Similarity=0.354  Sum_probs=65.3

Q ss_pred             HhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccc------------cCC---------CCCch-----hh
Q 004891           94 IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGV---------IPGFG-----GT  147 (725)
Q Consensus        94 l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~------------~Gl---------~p~~g-----~~  147 (725)
                      .....|||+|.++|.|..+++-|+.+||-+++.+.+.++...+.            +|+         ....+     .+
T Consensus         2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s   81 (154)
T PF01343_consen    2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS   81 (154)
T ss_dssp             HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--
T ss_pred             ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC
Confidence            35689999999999999999999999999999998877765444            222         11111     00


Q ss_pred             ----chH-----------------hhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHH
Q 004891          148 ----QRL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLW  196 (725)
Q Consensus       148 ----~~l-----------------~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~  196 (725)
                          ..+                 .|-+... ..+-+..|..+++++|++.||||++-..+++...+.+.
T Consensus        82 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~-~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~~  150 (154)
T PF01343_consen   82 EEERENLQELLDELYDQFVNDVAEGRGLSPD-DVEEIADGGVFTAQQALELGLIDEIGTFDEAIARLAKL  150 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HH-HHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCCHH-HHHHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHHH
Confidence                001                 1111112 22336789999999999999999998777776665543

; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=97.58  E-value=0.00028  Score=75.10  Aligned_cols=110  Identities=15%  Similarity=0.090  Sum_probs=74.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|||||.|.+|..+|..+..-|.+|..||+.....               ..+             .. ..++ +.++.
T Consensus       146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~---------------~~~-------------~~-~~~l~ell~~  196 (311)
T PRK08410        146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK---------------NEE-------------YE-RVSLEELLKT  196 (311)
T ss_pred             CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc---------------ccC-------------ce-eecHHHHhhc
Confidence            689999999999999999998899999999863210               000             11 1233 56799


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhcccCC-CCcEEEEecCC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFFS  448 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~-~~r~ig~h~~~  448 (725)
                      ||+|+.++|-..+.+.-+=++..+.++++++++..+-+  +.-..+.+.+.. +-. .++..|.
T Consensus       197 sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~  259 (311)
T PRK08410        197 SDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLE  259 (311)
T ss_pred             CCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCC
Confidence            99999999976665444445677788999998643333  333455555543 233 5666553

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=97.58  E-value=0.0017  Score=73.89  Aligned_cols=138  Identities=12%  Similarity=0.054  Sum_probs=89.9

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEE
Q 004891           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (725)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav  105 (725)
                      -+.+++-++...+.++.++.. .+-+|-|-=.+++++ |.+-.+.          .....+.+.+ ..+.....|+|++|
T Consensus       221 G~~~peGyRKAlRlmkLAekf-gLPIVtLVDTpGA~p-G~~AEe~----------Gq~~aIArnl-~amasl~VP~ISVV  287 (762)
T PLN03229        221 GMPTPHGYRKALRMMYYADHH-GFPIVTFIDTPGAYA-DLKSEEL----------GQGEAIAHNL-RTMFGLKVPIVSIV  287 (762)
T ss_pred             CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CchhHHH----------hHHHHHHHHH-HHHhCCCCCEEEEE
Confidence            467788888888888887754 455555543333333 3222221          0112233444 45778999999999


Q ss_pred             cccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 004891          106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT  185 (725)
Q Consensus       106 ~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~  185 (725)
                      -|.|.|||......||+++|.+++.++.      +-|.++.+..+...   .+|.+ +...-.++|++.+++|+||+|+|
T Consensus       288 iGeggSGGAlA~g~aD~VlMle~A~~sV------isPEgaAsILwkd~---~~A~e-AAe~lkiTa~dL~~lGiiD~IIp  357 (762)
T PLN03229        288 IGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSA---KAAPK-AAEKLRITAQELCRLQIADGIIP  357 (762)
T ss_pred             eCCcchHHHHHhhcCCEEEEecCCeEEe------cCHHHHHHHHhcCc---ccHHH-HHHHcCCCHHHHHhCCCCeeecc
Confidence            9999888887777899999999887653      12444433333222   22222 34556899999999999999997


Q ss_pred             c
Q 004891          186 S  186 (725)
Q Consensus       186 ~  186 (725)
                      .
T Consensus       358 E  358 (762)
T PLN03229        358 E  358 (762)
T ss_pred             C
Confidence            3

>PRK05654 acetyl-CoA carboxylase subunit beta; Validated

Probab=97.54  E-value=0.0035  Score=65.46  Aligned_cols=158  Identities=15%  Similarity=0.166  Sum_probs=101.7

Q ss_pred             EEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHH
Q 004891           16 AIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL   93 (725)
Q Consensus        16 ~~i~l~~p~--~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (725)
                      ..|.-+++.  .-+++...-+.+.++++.+... .+-+|.|.-.|+     +.++|   ... . ...+.. ....+ .+
T Consensus       123 V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsgG-----armqE---gi~-s-L~~~ak-~~~a~-~~  189 (292)
T PRK05654        123 VVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASGG-----ARMQE---GLL-S-LMQMAK-TSAAL-KR  189 (292)
T ss_pred             EEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCC-----cchhh---hhh-H-HHhHHH-HHHHH-HH
Confidence            334445663  5899999999999999988765 567777764442     22221   000 0 001111 11223 23


Q ss_pred             HhhCCCcEEEEEcccccchhh-HHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHH
Q 004891           94 IEDCKKPIVAAVEGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE  172 (725)
Q Consensus        94 l~~~~kp~Iaav~G~a~GgG~-~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~  172 (725)
                      +.....|.|+++.|+|+||+. ..++.||++||.++|.+++....           .+...+|..     + .-+.-+++
T Consensus       190 ~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------vie~~~~e~-----l-pe~~~~ae  252 (292)
T PRK05654        190 LSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPR-----------VIEQTVREK-----L-PEGFQRAE  252 (292)
T ss_pred             HHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHH-----------HHHhhhhhh-----h-hhhhcCHH
Confidence            556789999999999999965 45778999999999888763221           111111111     1 11223677


Q ss_pred             HHHHcCCcceecCcchHHHHHHHHHHHHHhc
Q 004891          173 EGWKLGLIDAVVTSEELLKVSRLWALDIAAR  203 (725)
Q Consensus       173 eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~  203 (725)
                      -+.+.|+||.|+++.++.....++.+.+...
T Consensus       253 ~~~~~G~vD~Vv~~~e~r~~l~~~L~~~~~~  283 (292)
T PRK05654        253 FLLEHGAIDMIVHRRELRDTLASLLALHTKQ  283 (292)
T ss_pred             HHHhCCCCcEEECHHHHHHHHHHHHHHHhcC
Confidence            7889999999999999998888888776544

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=97.54  E-value=0.00036  Score=77.01  Aligned_cols=100  Identities=16%  Similarity=0.201  Sum_probs=69.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|||||.|.+|..+|..+..-|.+|+.||+++...                .            .......++ +.++.
T Consensus       152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----------------~------------~~~~~~~~l~ell~~  203 (409)
T PRK11790        152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----------------L------------GNARQVGSLEELLAQ  203 (409)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----------------c------------CCceecCCHHHHHhh
Confidence            689999999999999999999999999999864210                0            011112244 56799


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhcccC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS  436 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~  436 (725)
                      ||+|+.++|-..+.+.-+=.+....++++++++..+-+  +....+.+.+.
T Consensus       204 sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~  254 (409)
T PRK11790        204 SDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALK  254 (409)
T ss_pred             CCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHH
Confidence            99999999976665444435677788999988643323  33335555554

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=97.53  E-value=0.00032  Score=77.22  Aligned_cols=102  Identities=16%  Similarity=0.151  Sum_probs=71.2

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHC-------CC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcc-
Q 004891          309 RKVAVIGG-GLMGSGIATAHILN-------NI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK-  377 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~-------G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~-  377 (725)
                      -||+|||+ |.+|.++|..++..       |+  +++++|++++.++...-.+.+....+              +..+. 
T Consensus       101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~--------------~~~v~i  166 (444)
T PLN00112        101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPL--------------LREVSI  166 (444)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhh--------------cCceEE
Confidence            58999999 99999999999988       66  89999999998765443333322111              11233 


Q ss_pred             cccCcccccCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891          378 GVLDYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTS  424 (725)
Q Consensus       378 ~~~~~~~l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS  424 (725)
                      .+.+++++++||+||.+.-              .+..+.+++...|.++..++++++..+.
T Consensus       167 ~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsN  227 (444)
T PLN00112        167 GIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGN  227 (444)
T ss_pred             ecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCC
Confidence            2466799999999998862              1344555666677775567777765443

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=97.49  E-value=0.0006  Score=72.84  Aligned_cols=101  Identities=13%  Similarity=0.096  Sum_probs=69.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHH-HCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          309 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~-~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      ++|||||.|.+|..+|..+. .-|.+|..||+....-...            ..+             ... .++ +.++
T Consensus       146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~------------~~~-------------~~~-~~l~ell~  199 (323)
T PRK15409        146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEE------------RFN-------------ARY-CDLDTLLQ  199 (323)
T ss_pred             CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhHH------------hcC-------------cEe-cCHHHHHH
Confidence            68999999999999999987 6789999999874221000            000             111 233 5679


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC-C--CChHHHhcccC
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTS  436 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~  436 (725)
                      +||+|+.++|-..+.+.-+=.+....++++++++ |++ +  +.-..+.+.+.
T Consensus       200 ~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~vVde~AL~~AL~  251 (323)
T PRK15409        200 ESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFI-NAGRGPVVDENALIAALQ  251 (323)
T ss_pred             hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence            9999999999777655444456777889999886 454 3  33345555554

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.47  E-value=0.0008  Score=66.81  Aligned_cols=39  Identities=23%  Similarity=0.378  Sum_probs=35.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~  347 (725)
                      ++|+|+|+|.||..+|+.|.+.|++|+++|++++.++..
T Consensus        29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~   67 (200)
T cd01075          29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARA   67 (200)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            579999999999999999999999999999998876654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=97.47  E-value=0.0023  Score=63.84  Aligned_cols=137  Identities=16%  Similarity=0.173  Sum_probs=92.0

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEE--EEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEE
Q 004891           26 NALAIPIVAGLKDKFEEATSRDDVKAI--VLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA  103 (725)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~~~~v~~v--Vl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia  103 (725)
                      -.++..+...+...|..++..+.-+-|  .|.+.|+...+                      ...++ +.|...+.||..
T Consensus        61 ~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~a----------------------GlaIy-d~m~~~~~~V~t  117 (221)
T PRK14514         61 TQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYA----------------------GLGIY-DTMQFISSDVAT  117 (221)
T ss_pred             CEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhh----------------------HHHHH-HHHHhcCCCEEE
Confidence            357788888888877766643322222  22444432111                      12445 668889999999


Q ss_pred             EEcccccchhhHHhhhcCE--EEeeCCceEeCcccccCCCCCchh-h---------------chHhhhhC--HHHHHHHH
Q 004891          104 AVEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGG-T---------------QRLPRLVG--LSKAIEMM  163 (725)
Q Consensus       104 av~G~a~GgG~~lalacD~--~ia~~~a~~~~pe~~~Gl~p~~g~-~---------------~~l~r~vG--~~~a~~l~  163 (725)
                      .+-|.|.+.|.-|++++|.  |++.++++|.+-...-|.. +... .               ..+.+.-|  .....+++
T Consensus       118 v~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~-G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~  196 (221)
T PRK14514        118 ICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQ-GQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADS  196 (221)
T ss_pred             EEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh
Confidence            9999999999999999996  9999999988766543321 1111 0               00122223  34555667


Q ss_pred             HcCCCCCHHHHHHcCCcceecCc
Q 004891          164 LLSKSITSEEGWKLGLIDAVVTS  186 (725)
Q Consensus       164 l~g~~~~a~eA~~~Glv~~vv~~  186 (725)
                      -....++|+||++.||||+|+..
T Consensus       197 ~rd~wmtA~EA~eyGliD~Vi~~  219 (221)
T PRK14514        197 DRDYWMTAQEAKEYGMIDEVLIK  219 (221)
T ss_pred             hcCccCCHHHHHHcCCccEEeec
Confidence            77889999999999999999853

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=97.47  E-value=9.8e-05  Score=80.16  Aligned_cols=110  Identities=11%  Similarity=0.075  Sum_probs=71.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|||||+|.||+.+|..+...|++|++||+.....+                +            ... ..++ +.+++
T Consensus       117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~----------------~------------~~~-~~~l~ell~~  167 (381)
T PRK00257        117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE----------------G------------DGD-FVSLERILEE  167 (381)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc----------------c------------Ccc-ccCHHHHHhh
Confidence            6899999999999999999999999999998543210                0            001 1233 45689


Q ss_pred             CCEEEEeccCChH---HHHHHH-HHHHHhCCCCeEEEecCCCCC--hHHHhcccC-CCCcEEEEecC
Q 004891          388 VDMVIEAVIESVP---LKQKIF-SELEKACPPHCILATNTSTID--LNIVGEKTS-SQDRIIGAHFF  447 (725)
Q Consensus       388 aDlVIeavpe~~~---~k~~v~-~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~-~~~r~ig~h~~  447 (725)
                      ||+|+.++|-..+   ....++ ++....++++++++..+-+-.  ...+.+.+. ......++..|
T Consensus       168 aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~  234 (381)
T PRK00257        168 CDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVW  234 (381)
T ss_pred             CCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCC
Confidence            9999999995442   234455 456677899998874333333  334444443 22334455544

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=97.46  E-value=0.00013  Score=77.71  Aligned_cols=100  Identities=16%  Similarity=0.104  Sum_probs=65.9

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCC-------cEEEEeCChHH--HHHHHHHHHHHHHhhHHcCCCCHHHHHHhhc--Cc
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKANNALK--ML  376 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~e~--~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~--~i  376 (725)
                      .||+|||+ |.+|+++|..++..|.       +++++|++++.  ++...-.+.+...              ....  .+
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~--------------~~~~~~~i   68 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAF--------------PLLAEIVI   68 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccc--------------cccCceEE
Confidence            58999999 9999999999998887       79999996432  2221111111000              0001  12


Q ss_pred             ccccCcccccCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891          377 KGVLDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT  423 (725)
Q Consensus       377 ~~~~~~~~l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (725)
                      . +.+++++++||+||.+.--              +..+.+++..+|.++.+++++++..|
T Consensus        69 ~-~~~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs  128 (322)
T cd01338          69 T-DDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG  128 (322)
T ss_pred             e-cCcHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence            2 4566899999999988621              34456667777888886677666544

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=97.46  E-value=0.00048  Score=71.78  Aligned_cols=80  Identities=23%  Similarity=0.180  Sum_probs=54.0

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHC--CCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~--G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (725)
                      ...||||||+|.||..++..+.+.  +++|+ ++|+++++.+...+.                      ++.....+++ 
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~----------------------~g~~~~~~~~e   62 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWG----------------------LRRPPPVVPLD   62 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHh----------------------cCCCcccCCHH
Confidence            347899999999999999999874  78876 889998875543211                      0111123334 


Q ss_pred             ccccCCCEEEEeccCChHHHHHHHHHHH
Q 004891          383 SEFKDVDMVIEAVIESVPLKQKIFSELE  410 (725)
Q Consensus       383 ~~l~~aDlVIeavpe~~~~k~~v~~~l~  410 (725)
                      +.+.++|+|++|.|.+.  -.++..+..
T Consensus        63 ell~~~D~Vvi~tp~~~--h~e~~~~aL   88 (271)
T PRK13302         63 QLATHADIVVEAAPASV--LRAIVEPVL   88 (271)
T ss_pred             HHhcCCCEEEECCCcHH--HHHHHHHHH
Confidence            34578999999999543  345544443

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=97.46  E-value=0.0014  Score=66.74  Aligned_cols=198  Identities=19%  Similarity=0.235  Sum_probs=118.8

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCChHHHHHHHHH----HHHHHHhhHHcCCCCHHHHHHhhcCcccccC
Q 004891          308 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKT----IEANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~--G~~V~~~d~~~e~~~~~~~~----i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (725)
                      |.||.-||+|..|++....++..  ..+|+++|++..++..-...    ++-.|+..++.         ..-.++-+++|
T Consensus         1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~---------crgknlffstd   71 (481)
T KOG2666|consen    1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQ---------CRGKNLFFSTD   71 (481)
T ss_pred             CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHH---------hcCCceeeecc
Confidence            46899999999999987776654  45899999999887653211    11112222211         11134667788


Q ss_pred             c-ccccCCCEEEEecc-------------CChHHHHHHHHHHHHhCCCCeEEEecCCCCChHH---HhcccCCCCcEEEE
Q 004891          382 Y-SEFKDVDMVIEAVI-------------ESVPLKQKIFSELEKACPPHCILATNTSTIDLNI---VGEKTSSQDRIIGA  444 (725)
Q Consensus       382 ~-~~l~~aDlVIeavp-------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~---l~~~~~~~~r~ig~  444 (725)
                      . .+++++|+|+.+|-             .|+......-+.|.+....+.|++ .-|+.|+..   +...+.+...  |+
T Consensus        72 iekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivv-ekstvpv~aaesi~~il~~n~~--~i  148 (481)
T KOG2666|consen   72 IEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVV-EKSTVPVKAAESIEKILNHNSK--GI  148 (481)
T ss_pred             hHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEE-eeccccchHHHHHHHHHhcCCC--Cc
Confidence            7 57899999999983             255566666677888877788875 456666542   2223332222  44


Q ss_pred             ec------------------CCCCCCCCeeeEecCCCCC--HHHHHHHHHHHHHcCC-eeEEE-----cCCcchhhhhhh
Q 004891          445 HF------------------FSPAHVMPLLEIVRTERTS--AQVILDLMTVGKIIKK-VPVVV-----GNCTGFAVNRAF  498 (725)
Q Consensus       445 h~------------------~~p~~~~~lveii~~~~t~--~e~~~~~~~l~~~lGk-~~v~v-----~d~~Gfi~nRl~  498 (725)
                      ||                  +||-+.     ++.|..|.  ..+++.+..+++.+-. ..+++     .+-..+.+|-++
T Consensus       149 ~fqilsnpeflaegtaikdl~npdrv-----ligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanafl  223 (481)
T KOG2666|consen  149 KFQILSNPEFLAEGTAIKDLFNPDRV-----LIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFL  223 (481)
T ss_pred             eeEeccChHHhcccchhhhhcCCceE-----EECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHH
Confidence            44                  344333     77777763  3466777777776543 22333     233444555554


Q ss_pred             HH---HHHHHHHHHHc-CCCHHHHHHHH
Q 004891          499 FP---YSQSARLLVSL-GVDVFRIDSAI  522 (725)
Q Consensus       499 ~a---~~~Ea~~l~~~-Gv~~~dID~~~  522 (725)
                      ..   -+|....+.+. |.+++++..+.
T Consensus       224 aqrissins~salceatgadv~eva~av  251 (481)
T KOG2666|consen  224 AQRISSINSMSALCEATGADVSEVAYAV  251 (481)
T ss_pred             HHHHhhhHHHHHHHHhcCCCHHHHHHHh
Confidence            32   22333333444 88999988876

>PLN00106 malate dehydrogenase

Probab=97.45  E-value=0.00042  Score=73.74  Aligned_cols=99  Identities=18%  Similarity=0.284  Sum_probs=63.6

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccc-ccC---
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLD---  381 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~---  381 (725)
                      .||+|||+ |.+|+.+|..++..+.  +++++|+++ ....+.+ +.+.       .        . .-.+.. +.+   
T Consensus        19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~-~~g~a~D-l~~~-------~--------~-~~~i~~~~~~~d~   80 (323)
T PLN00106         19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN-TPGVAAD-VSHI-------N--------T-PAQVRGFLGDDQL   80 (323)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC-CCeeEch-hhhC-------C--------c-CceEEEEeCCCCH
Confidence            59999999 9999999999998776  899999987 1111110 0000       0        0 002221 223   


Q ss_pred             cccccCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecCCCC
Q 004891          382 YSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTI  426 (725)
Q Consensus       382 ~~~l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~  426 (725)
                      ++++++||+||.+.-              .+..+.+++.+.+.++. ++++++..|...
T Consensus        81 ~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aivivvSNPv  138 (323)
T PLN00106         81 GDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVNIISNPV  138 (323)
T ss_pred             HHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCCc
Confidence            478999999998862              34556667777788776 566655434333

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=97.44  E-value=0.00049  Score=71.57  Aligned_cols=86  Identities=22%  Similarity=0.258  Sum_probs=57.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC--CCc-EEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cc
Q 004891          309 RKVAVIGGGLMGSGIATAHILN--NIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~--G~~-V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (725)
                      .||+|||+|.||..++..+.+.  +++ +.++|+++++.+...+.          .+             ....+++ +.
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~----------~~-------------~~~~~~~~el   58 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASK----------TG-------------AKACLSIDEL   58 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHh----------cC-------------CeeECCHHHH
Confidence            5899999999999999999876  455 55899998876553210          01             1223444 34


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEE
Q 004891          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  420 (725)
Q Consensus       385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~  420 (725)
                      +.++|+|++|+|  .....++..++.+. ..+.++.
T Consensus        59 l~~~DvVvi~a~--~~~~~~~~~~al~~-Gk~Vvv~   91 (265)
T PRK13304         59 VEDVDLVVECAS--VNAVEEVVPKSLEN-GKDVIIM   91 (265)
T ss_pred             hcCCCEEEEcCC--hHHHHHHHHHHHHc-CCCEEEE
Confidence            588999999998  44445555555442 3444443

>PRK06932 glycerate dehydrogenase; Provisional

Probab=97.42  E-value=0.00097  Score=71.03  Aligned_cols=109  Identities=14%  Similarity=0.140  Sum_probs=73.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||.|.+|..+|..+..-|.+|+.||+....  ..            ..+                ..++ +.++.
T Consensus       148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~------------~~~----------------~~~l~ell~~  197 (314)
T PRK06932        148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC------------REG----------------YTPFEEVLKQ  197 (314)
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc------------ccc----------------cCCHHHHHHh
Confidence            68999999999999999998889999999975321  00            000                1233 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhcccCC-CCcEEEEecC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFF  447 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~-~~r~ig~h~~  447 (725)
                      ||+|+.++|-..+...-+=++....++++++++..+-+  +....+.+.+.. .-.-.++..|
T Consensus       198 sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~  260 (314)
T PRK06932        198 ADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVL  260 (314)
T ss_pred             CCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecC
Confidence            99999999966664443335677788999988643323  334455555542 2233455544

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=97.41  E-value=0.0023  Score=62.86  Aligned_cols=137  Identities=18%  Similarity=0.182  Sum_probs=94.7

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEE
Q 004891           27 ALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (725)
Q Consensus        27 al~~~~~~~l~~~l~~~~~~~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (725)
                      .++.++..++...|..++.++..+-|.+  .+.|      +|+..                ...++ +.|...+.||...
T Consensus        33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpG------G~v~~----------------g~aIy-d~m~~~~~~V~t~   89 (196)
T PRK12551         33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPG------GSVYD----------------GLGIF-DTMQHVKPDVHTV   89 (196)
T ss_pred             eecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCC------cchhh----------------HHHHH-HHHHhcCCCEEEE
Confidence            4889999999999999986543343333  3433      23211                12445 6688889999999


Q ss_pred             EcccccchhhHHhhhcCE--EEeeCCceEeCcccccCCCCCchh-h---------------chHhhhhC--HHHHHHHHH
Q 004891          105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGG-T---------------QRLPRLVG--LSKAIEMML  164 (725)
Q Consensus       105 v~G~a~GgG~~lalacD~--~ia~~~a~~~~pe~~~Gl~p~~g~-~---------------~~l~r~vG--~~~a~~l~l  164 (725)
                      +-|.|.+.|.-|++++|-  |++.+++++..-...-|. -+... .               ..+.+.-|  .....+++-
T Consensus        90 ~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~-~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~  168 (196)
T PRK12551         90 CVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGA-RGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTD  168 (196)
T ss_pred             EEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCccc-CCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhh
Confidence            999999999999999985  889999998876654332 11100 0               01122223  244556677


Q ss_pred             cCCCCCHHHHHHcCCcceecCcc
Q 004891          165 LSKSITSEEGWKLGLIDAVVTSE  187 (725)
Q Consensus       165 ~g~~~~a~eA~~~Glv~~vv~~~  187 (725)
                      ....++|+||++.||||+|++..
T Consensus       169 rd~~msa~EA~eyGliD~I~~~~  191 (196)
T PRK12551        169 RDFFMSPSEAVEYGLIDLVIDKR  191 (196)
T ss_pred             cCcCCCHHHHHHcCCCcEEeccC
Confidence            78889999999999999999653

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=97.40  E-value=0.00027  Score=74.86  Aligned_cols=98  Identities=17%  Similarity=0.286  Sum_probs=64.2

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccc-c-cC--c
Q 004891          310 KVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-V-LD--Y  382 (725)
Q Consensus       310 kIaVIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-~-~~--~  382 (725)
                      ||+|||+ |.+|+++|..++..|+  +++++|+++ ....+.+ +        ....        ....+.. + ++  +
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a~D-L--------~~~~--------~~~~i~~~~~~~~~~   62 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVAAD-L--------SHIP--------TAASVKGFSGEEGLE   62 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEEch-h--------hcCC--------cCceEEEecCCCchH
Confidence            7999999 9999999999998886  899999987 2111111 1        1110        0012332 2 23  6


Q ss_pred             ccccCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecCCCC
Q 004891          383 SEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTI  426 (725)
Q Consensus       383 ~~l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~  426 (725)
                      +++++||+||.+..              .+..+.+++..++.++. |+++++..|...
T Consensus        63 ~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iiivvsNPv  119 (312)
T TIGR01772        63 NALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMILVITNPV  119 (312)
T ss_pred             HHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEecCch
Confidence            89999999998872              24556666667787774 666665444433

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.40  E-value=0.00045  Score=72.94  Aligned_cols=91  Identities=19%  Similarity=0.241  Sum_probs=63.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      +||.|||.|.+|..++..|...|.+|+++|+++++.+.+.           ..|. +         .+. ..++ +.+.+
T Consensus       153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~-----------~~G~-~---------~~~-~~~l~~~l~~  210 (296)
T PRK08306        153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARIT-----------EMGL-S---------PFH-LSELAEEVGK  210 (296)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HcCC-e---------eec-HHHHHHHhCC
Confidence            6899999999999999999999999999999987654432           1110 0         000 1122 45688


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI  426 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~  426 (725)
                      +|+||.++|...     +-++..+.++++++|++.++..
T Consensus       211 aDiVI~t~p~~~-----i~~~~l~~~~~g~vIIDla~~p  244 (296)
T PRK08306        211 IDIIFNTIPALV-----LTKEVLSKMPPEALIIDLASKP  244 (296)
T ss_pred             CCEEEECCChhh-----hhHHHHHcCCCCcEEEEEccCC
Confidence            999999998321     2234455678888887655543

>PRK06487 glycerate dehydrogenase; Provisional

Probab=97.39  E-value=0.00066  Score=72.44  Aligned_cols=107  Identities=14%  Similarity=0.152  Sum_probs=73.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||.|.+|..+|..+..-|.+|+.||+..... .                             .. ..++ +.++.
T Consensus       149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~-~-----------------------------~~-~~~l~ell~~  197 (317)
T PRK06487        149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPA-R-----------------------------PD-RLPLDELLPQ  197 (317)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcc-c-----------------------------cc-ccCHHHHHHh
Confidence            689999999999999999998899999999863210 0                             00 1123 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC-C--CChHHHhcccCC-CCcEEEEecC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTSS-QDRIIGAHFF  447 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~~-~~r~ig~h~~  447 (725)
                      ||+|+.++|-..+.+.-+=++..+.++++++++ |++ +  +.-..+.+.+.. +-.-.++..|
T Consensus       198 sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lI-N~aRG~vVde~AL~~AL~~g~i~gAaLDVf  260 (317)
T PRK06487        198 VDALTLHCPLTEHTRHLIGARELALMKPGALLI-NTARGGLVDEQALADALRSGHLGGAATDVL  260 (317)
T ss_pred             CCEEEECCCCChHHhcCcCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHHcCCeeEEEeecC
Confidence            999999999776654444466777889999886 444 3  333455555542 2233445544

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=97.38  E-value=0.00062  Score=73.84  Aligned_cols=101  Identities=18%  Similarity=0.199  Sum_probs=67.9

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCC-------cEEEE--eCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcc-
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLK--EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK-  377 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~-------~V~~~--d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~-  377 (725)
                      -||+|||+ |.+|+++|..++..|.       .++++  |++++.++.-.-.+.+....              .+..+. 
T Consensus        45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~--------------~~~~v~i  110 (387)
T TIGR01757        45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYP--------------LLREVSI  110 (387)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhh--------------hcCceEE
Confidence            58999999 9999999999998876       24445  88888766543333322111              111233 


Q ss_pred             cccCcccccCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891          378 GVLDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT  423 (725)
Q Consensus       378 ~~~~~~~l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (725)
                      .+.+++++++||+||.+..-              +..+.+++...|.++.+++++++..+
T Consensus       111 ~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs  170 (387)
T TIGR01757       111 GIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG  170 (387)
T ss_pred             ecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC
Confidence            24567999999999987621              34455666677888777888776544

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit

Probab=97.37  E-value=0.0063  Score=63.27  Aligned_cols=155  Identities=17%  Similarity=0.196  Sum_probs=99.4

Q ss_pred             EEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004891           18 ITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (725)
Q Consensus        18 i~l~~p~--~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (725)
                      |.-+++.  .-+++....+.+..+++.+... .+-+|.|+..|++     -++|   ..  .....+.. ....+ .++.
T Consensus       124 v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dSgGa-----RmqE---g~--~sL~~~ak-~~~~~-~~~~  190 (285)
T TIGR00515       124 VAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSASGGA-----RMQE---AL--LSLMQMAK-TSAAL-AKMS  190 (285)
T ss_pred             EEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCCc-----cccc---ch--hHHHhHHH-HHHHH-HHHH
Confidence            3344553  4789999999999999988754 5677877654443     1211   00  00111111 11222 3356


Q ss_pred             hCCCcEEEEEcccccchhh-HHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHH
Q 004891           96 DCKKPIVAAVEGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG  174 (725)
Q Consensus        96 ~~~kp~Iaav~G~a~GgG~-~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA  174 (725)
                      ....|.|+++.|+|+||+. ..++.+|+++|.++|.+++....           .+...+|.      -+.-+.-+|+-+
T Consensus       191 ~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------Vie~ti~e------~lpe~~q~ae~~  253 (285)
T TIGR00515       191 ERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPR-----------VIEQTVRE------KLPEGFQTSEFL  253 (285)
T ss_pred             cCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHH-----------HHHHHhcC------ccchhcCCHHHH
Confidence            6789999999999999965 45679999999999988874222           11111221      011112366668


Q ss_pred             HHcCCcceecCcchHHHHHHHHHHHHHh
Q 004891          175 WKLGLIDAVVTSEELLKVSRLWALDIAA  202 (725)
Q Consensus       175 ~~~Glv~~vv~~~~l~~~a~~~a~~la~  202 (725)
                      .+.|+||.|+++.++.+...++.+.+..
T Consensus       254 ~~~G~vD~iv~~~~~r~~l~~~L~~~~~  281 (285)
T TIGR00515       254 LEHGAIDMIVHRPEMKKTLASLLAKLQN  281 (285)
T ss_pred             HhCCCCcEEECcHHHHHHHHHHHHHHhh
Confidence            8999999999999998888887766543

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=97.36  E-value=0.00039  Score=73.53  Aligned_cols=98  Identities=18%  Similarity=0.243  Sum_probs=63.4

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccc-cC---
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LD---  381 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~---  381 (725)
                      .||+|||+ |.+|+++|..++..|.  +++++|++  .++...-.+.+        ..        ..-.+... .+   
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~--------~~--------~~~~i~~~~~~~~~   62 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSH--------IN--------TPAKVTGYLGPEEL   62 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHh--------CC--------CcceEEEecCCCch
Confidence            38999999 9999999999998885  89999998  21111000111        10        00123322 32   


Q ss_pred             cccccCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004891          382 YSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTST  425 (725)
Q Consensus       382 ~~~l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~  425 (725)
                      ++++++||+||.+.-              .+..+.+++...+.++. |+++++..|..
T Consensus        63 y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~-p~a~vivvtNP  119 (310)
T cd01337          63 KKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKAC-PKALILIISNP  119 (310)
T ss_pred             HHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCc
Confidence            689999999998872              24456666667787774 56766544433

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=97.35  E-value=0.0005  Score=78.09  Aligned_cols=70  Identities=13%  Similarity=0.170  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCH-HHHHHHHHHHHHHh
Q 004891          621 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGA-NYVYTSLKKWSQLY  691 (725)
Q Consensus       621 ~~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~-~~~~~~~~~~~~~~  691 (725)
                      .--+.||++.++++||+.++++|++ |+++||.++..|+|++...-|||+..|..|. +.+.+.++++.+.+
T Consensus       184 ~gfi~nrl~~a~~~EA~~L~~~g~~-s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g~~~g~~~~~~~~~~~~  254 (495)
T PRK07531        184 DAFVGDRLLEALWREALWLVKDGIA-TTEEIDDVIRYSFGLRWAQMGLFETYRIAGGEAGMRHFLAQFGPCL  254 (495)
T ss_pred             cchhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhccCCCccccchHHHHHhcCcHHHHHHHHHHhchhh
Confidence            4468999999999999999999999 9999999999999987666799999999984 45556666655443

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=97.35  E-value=0.0027  Score=62.49  Aligned_cols=137  Identities=17%  Similarity=0.232  Sum_probs=95.5

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCce--EEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEE
Q 004891           26 NALAIPIVAGLKDKFEEATSRDDVK--AIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA  103 (725)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~~~~v~--~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia  103 (725)
                      -.++.++-..+...|-.++.++.-+  -|-|.+.|      +|+.                ....++ +.|...+-||..
T Consensus        34 ~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpG------G~v~----------------~GlaIy-d~m~~~~~~V~T   90 (201)
T PRK14513         34 TPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPG------GEVY----------------AGLAIY-DTMRYIKAPVST   90 (201)
T ss_pred             CEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCC------Cchh----------------hHHHHH-HHHHhcCCCEEE
Confidence            3588888888888888887644322  22234443      3321                122455 668889999999


Q ss_pred             EEcccccchhhHHhhhcCE--EEeeCCceEeCcccccCCCCCchhhch-----------------HhhhhC--HHHHHHH
Q 004891          104 AVEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQR-----------------LPRLVG--LSKAIEM  162 (725)
Q Consensus       104 av~G~a~GgG~~lalacD~--~ia~~~a~~~~pe~~~Gl~p~~g~~~~-----------------l~r~vG--~~~a~~l  162 (725)
                      .+.|.|.+.|.-|++++|-  |++.++|++-+.....|..  +.....                 +.+.-|  .....++
T Consensus        91 i~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~--G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~  168 (201)
T PRK14513         91 ICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR--GNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRD  168 (201)
T ss_pred             EEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            9999999999999999996  9999999998776654431  111111                 122223  3455566


Q ss_pred             HHcCCCCCHHHHHHcCCcceecCcc
Q 004891          163 MLLSKSITSEEGWKLGLIDAVVTSE  187 (725)
Q Consensus       163 ~l~g~~~~a~eA~~~Glv~~vv~~~  187 (725)
                      +-....++|+||++.||||+|+++.
T Consensus       169 ~~rd~~msa~EA~eyGliD~I~~~~  193 (201)
T PRK14513        169 MERDYFMSPEEAKAYGLIDSVIEPT  193 (201)
T ss_pred             hccCcccCHHHHHHcCCCcEEeccC
Confidence            7778889999999999999998653

>TIGR03133 malonate_beta malonate decarboxylase, beta subunit

Probab=97.34  E-value=0.021  Score=58.90  Aligned_cols=139  Identities=15%  Similarity=0.225  Sum_probs=82.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcC----CCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCc
Q 004891           25 VNALAIPIVAGLKDKFEEATSR----DDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKP  100 (725)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~~----~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp  100 (725)
                      --++....-+.+..+++.+.+|    ..+-+|.|.-.|     |+.+++-..    . ...+.+. ...+ ..+... .|
T Consensus        72 GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSg-----GaRlqEg~~----~-L~~~a~i-~~~~-~~ls~~-vP  138 (274)
T TIGR03133        72 GGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTG-----GVRLQEANA----G-LIAIAEI-MRAI-LDARAA-VP  138 (274)
T ss_pred             CcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCC-----CcChhhhHH----H-HHHHHHH-HHHH-HHHhCC-CC
Confidence            3678888888899999888752    123466664333     233322110    0 0011111 1222 124444 99


Q ss_pred             EEEEEccc--ccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCH--HHHHHHHHcCCCCCHHHHHH
Q 004891          101 IVAAVEGL--ALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL--SKAIEMMLLSKSITSEEGWK  176 (725)
Q Consensus       101 ~Iaav~G~--a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~--~~a~~l~l~g~~~~a~eA~~  176 (725)
                      +|+++.|+  |+||+..++.+||++||++++++++.-.           ..+....|.  -...+-.+.-+.+.++....
T Consensus       139 ~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aGP-----------~VIe~~~G~e~~~~~d~~l~~~~lGG~~~~~  207 (274)
T TIGR03133       139 VIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSGP-----------EVIEQEAGVEEFDSRDRALVWRTTGGKHRFL  207 (274)
T ss_pred             EEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccCH-----------HHHHHhcCCCccCHHHhcccccccchHhHhh
Confidence            99999999  8999999999999999999888876311           111111221  11222233334456667778


Q ss_pred             cCCcceecCcc
Q 004891          177 LGLIDAVVTSE  187 (725)
Q Consensus       177 ~Glv~~vv~~~  187 (725)
                      .|++|.+++.+
T Consensus       208 sG~~D~~v~dd  218 (274)
T TIGR03133       208 SGDADVLVEDD  218 (274)
T ss_pred             cccceEEeCCH
Confidence            99999999764

Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.

>PRK06141 ornithine cyclodeaminase; Validated

Probab=97.31  E-value=0.00054  Score=73.08  Aligned_cols=92  Identities=17%  Similarity=0.134  Sum_probs=60.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH--CCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          309 RKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~--~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      ++|+|||+|.||..++..+..  .+.+|++|+|++++.+...+.+.+       .+.           .+....+. +.+
T Consensus       126 ~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~-------~g~-----------~~~~~~~~~~av  187 (314)
T PRK06141        126 SRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRA-------QGF-----------DAEVVTDLEAAV  187 (314)
T ss_pred             ceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------ceEEeCCHHHHH
Confidence            679999999999999986654  446899999999987776543221       110           12233444 567


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  424 (725)
                      ++||+||.|.+...    .++..  +.+++++.|...++
T Consensus       188 ~~aDIVi~aT~s~~----pvl~~--~~l~~g~~i~~ig~  220 (314)
T PRK06141        188 RQADIISCATLSTE----PLVRG--EWLKPGTHLDLVGN  220 (314)
T ss_pred             hcCCEEEEeeCCCC----CEecH--HHcCCCCEEEeeCC
Confidence            89999988887442    22221  35677876644433

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=97.28  E-value=0.00066  Score=65.84  Aligned_cols=95  Identities=21%  Similarity=0.291  Sum_probs=60.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCh---HHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccC----
Q 004891          310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS---EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD----  381 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~---e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~----  381 (725)
                      ||.|||+|.||+.++..|++.|. +++++|.+.   +.+.+-.  +   ..  .+-|.-..+.....+.++....+    
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~--~---~~--~~vg~~Ka~~~~~~l~~lnp~v~i~~~   73 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQ--Y---FL--SQIGEPKVEALKENLREINPFVKIEAI   73 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhccc--c---cH--hhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence            68999999999999999999999 599999886   3332211  0   00  01122222222222222221111    


Q ss_pred             --------c-ccccCCCEEEEeccCChHHHHHHHHHHHHh
Q 004891          382 --------Y-SEFKDVDMVIEAVIESVPLKQKIFSELEKA  412 (725)
Q Consensus       382 --------~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~~  412 (725)
                              . +.++++|+||+| .++.+.+..+.....+.
T Consensus        74 ~~~~~~~~~~~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~  112 (174)
T cd01487          74 NIKIDENNLEGLFGDCDIVVEA-FDNAETKAMLAESLLGN  112 (174)
T ss_pred             EeecChhhHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHH
Confidence                    1 346889999999 57888887777776665

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed

Probab=97.27  E-value=0.016  Score=60.17  Aligned_cols=141  Identities=16%  Similarity=0.137  Sum_probs=91.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEE
Q 004891           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (725)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (725)
                      .-++....-+.+.++++.+... .+-+|.++..|+     +-+++-..    . ...+... ...+.+....-..|.|++
T Consensus       146 gGSmG~v~geKi~ra~e~A~~~-rlPlV~l~~SGG-----ARmQEg~~----s-L~qmak~-saa~~~~~~~~~vP~Isv  213 (296)
T CHL00174        146 GGSMGSVVGEKITRLIEYATNE-SLPLIIVCASGG-----ARMQEGSL----S-LMQMAKI-SSALYDYQSNKKLFYISI  213 (296)
T ss_pred             ccCcCHHHHHHHHHHHHHHHHc-CCCEEEEECCCC-----ccccccch----h-hhhhHHH-HHHHHHHHHcCCCCEEEE
Confidence            5789999999999999988765 466777765443     33322100    0 1111111 111212122467999999


Q ss_pred             EcccccchhhHH-hhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCC-----CCHHHHHHcC
Q 004891          105 VEGLALGGGLEL-AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKS-----ITSEEGWKLG  178 (725)
Q Consensus       105 v~G~a~GgG~~l-alacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~-----~~a~eA~~~G  178 (725)
                      +.|+|.||+... ++.||++|+.+++.+++.-.                    +....  .+|+.     -+|+-.++.|
T Consensus       214 l~gPt~GG~aas~a~l~Diiiae~~A~IgfAGP--------------------rVIe~--t~ge~lpe~fq~ae~l~~~G  271 (296)
T CHL00174        214 LTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGK--------------------RVIEQ--TLNKTVPEGSQAAEYLFDKG  271 (296)
T ss_pred             EcCCCchHHHHHHHHcccEEEEeCCeEEEeeCH--------------------HHHHH--hcCCcCCcccccHHHHHhCc
Confidence            999999998755 66799999988887775421                    11111  12332     3578888999


Q ss_pred             CcceecCcchHHHHHHHHHHH
Q 004891          179 LIDAVVTSEELLKVSRLWALD  199 (725)
Q Consensus       179 lv~~vv~~~~l~~~a~~~a~~  199 (725)
                      +||.+|+..++.+....+.+-
T Consensus       272 ~vD~iV~r~~lr~~l~~ll~~  292 (296)
T CHL00174        272 LFDLIVPRNLLKGVLSELFQL  292 (296)
T ss_pred             CceEEEcHHHHHHHHHHHHHh
Confidence            999999999988777666543

>cd00704 MDH Malate dehydrogenase

Probab=97.27  E-value=0.00026  Score=75.54  Aligned_cols=100  Identities=17%  Similarity=0.151  Sum_probs=64.3

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCC-------cEEEEeCCh--HHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccc-
Q 004891          310 KVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-  378 (725)
Q Consensus       310 kIaVIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~--e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-  378 (725)
                      ||+|||+ |.+|+.+|..|+..|.       +++++|+++  +.++.....+.+...              ........ 
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~--------------~~~~~~~i~   67 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAF--------------PLLKGVVIT   67 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcc--------------cccCCcEEe
Confidence            7999999 9999999999998664       499999987  432221111111000              00011111 


Q ss_pred             ccCcccccCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891          379 VLDYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNT  423 (725)
Q Consensus       379 ~~~~~~l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (725)
                      ..+++++++||+||.+.-              .+..+.+++..+|.++++|+++++..|
T Consensus        68 ~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs  126 (323)
T cd00704          68 TDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG  126 (323)
T ss_pred             cChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            345689999999998762              144456677777888876677666544

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.25  E-value=0.00061  Score=71.19  Aligned_cols=71  Identities=18%  Similarity=0.223  Sum_probs=54.9

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHHCCCcEEEEe-CChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891          309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKE-VNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       309 ~kIaVIG-~G~mG~~iA~~l~~~G~~V~~~d-~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      ++|+||| .|.||.+||..|.++|++|++|+ ++++- +                                     +.++
T Consensus       159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l-~-------------------------------------e~~~  200 (296)
T PRK14188        159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDL-P-------------------------------------AVCR  200 (296)
T ss_pred             CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCH-H-------------------------------------HHHh
Confidence            6899999 99999999999999999999995 65421 0                                     2456


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  424 (725)
                      .||+||.|++....+...+       +++++++++.+.
T Consensus       201 ~ADIVIsavg~~~~v~~~~-------lk~GavVIDvGi  231 (296)
T PRK14188        201 RADILVAAVGRPEMVKGDW-------IKPGATVIDVGI  231 (296)
T ss_pred             cCCEEEEecCChhhcchhe-------ecCCCEEEEcCC
Confidence            7999999998655433322       789998886543

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=97.24  E-value=0.00024  Score=76.96  Aligned_cols=110  Identities=14%  Similarity=0.115  Sum_probs=70.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|||||.|.||+.+|..+..-|++|.+||+....  .               +           .... ..++ +.+++
T Consensus       117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~--~---------------~-----------~~~~-~~~L~ell~~  167 (378)
T PRK15438        117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD--R---------------G-----------DEGD-FRSLDELVQE  167 (378)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc--c---------------c-----------cccc-cCCHHHHHhh
Confidence            68999999999999999999999999999974321  0               0           0001 1234 45689


Q ss_pred             CCEEEEeccCChH---HHHHHH-HHHHHhCCCCeEEEecCCC--CChHHHhcccC-CCCcEEEEecC
Q 004891          388 VDMVIEAVIESVP---LKQKIF-SELEKACPPHCILATNTST--IDLNIVGEKTS-SQDRIIGAHFF  447 (725)
Q Consensus       388 aDlVIeavpe~~~---~k~~v~-~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~-~~~r~ig~h~~  447 (725)
                      ||+|+.++|-..+   -...++ ++....++++++++..+=+  +.-..+.+.+. .+..-.++..|
T Consensus       168 sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~  234 (378)
T PRK15438        168 ADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVW  234 (378)
T ss_pred             CCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecC
Confidence            9999999984432   123334 4566778999998743323  33334545443 23334455544

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=97.24  E-value=0.004  Score=71.86  Aligned_cols=105  Identities=17%  Similarity=0.199  Sum_probs=73.7

Q ss_pred             cCcEEEEEeCC-C-----CCCCCC----------HHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccC
Q 004891           12 NDGVAIITLIN-P-----PVNALA----------IPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG   75 (725)
Q Consensus        12 ~~~v~~i~l~~-p-----~~Nal~----------~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~   75 (725)
                      ++++.+|-++. +     +.+.+.          .-.+.++.++++.+.+|+.|++|||.-.+   +.|+++..+.    
T Consensus        41 ~~~~L~l~~~gg~i~e~~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~A~~D~~IkgIvL~i~~---~~g~~~~~~~----  113 (584)
T TIGR00705        41 SSGALLLDLPVGDVTDQSPRVSLQGTLLGNPKGRAISLFDIVNAIRQAADDRRIEGLVFDLSN---FSGWDSPHLV----  113 (584)
T ss_pred             CCeEEEEECCCCcccCcCCCCchhhhhccCCCcCCcCHHHHHHHHHHHhcCCCceEEEEEccC---CCCCCHHHHH----
Confidence            56788888873 3     123221          23578999999999999999999998642   1233332221    


Q ss_pred             CCcccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCc
Q 004891           76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLP  134 (725)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~p  134 (725)
                               .+.+.+ +.+....|||||..++.+ -+|+.|+.+||.+++.+.+.+++.
T Consensus       114 ---------ei~~ai-~~fk~sgKpVvA~~~~~~-s~~YylAs~AD~I~~~p~G~v~~~  161 (584)
T TIGR00705       114 ---------EIGSAL-SEFKDSGKPVYAYGTNYS-QGQYYLASFADEIILNPMGSVDLH  161 (584)
T ss_pred             ---------HHHHHH-HHHHhcCCeEEEEEcccc-chhhhhhhhCCEEEECCCceEEee
Confidence                     122334 346678899999888765 789999999999999998877553

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.24  E-value=0.0076  Score=62.62  Aligned_cols=194  Identities=13%  Similarity=0.090  Sum_probs=121.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcc----
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS----  383 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~----  383 (725)
                      ...|+.||++.||..++.+.+.+|+.|.+|+|+..+++..+++-.        +|           ..+....+++    
T Consensus         6 ~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flanea--------k~-----------~~i~ga~S~ed~v~   66 (487)
T KOG2653|consen    6 KADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEA--------KG-----------TKIIGAYSLEDFVS   66 (487)
T ss_pred             ccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhh--------cC-----------CcccCCCCHHHHHH
Confidence            467999999999999999999999999999999999887654211        11           0122233332    


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC-CCChHHHh-c-ccCCCCcEEEEecC---CCCCCCCeee
Q 004891          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-TIDLNIVG-E-KTSSQDRIIGAHFF---SPAHVMPLLE  457 (725)
Q Consensus       384 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~~~~~~l~-~-~~~~~~r~ig~h~~---~p~~~~~lve  457 (725)
                      .++.--.||..|... .....++++|.+++.++.||++... .++-+... . .....--|+|+-.-   ..++.+|  .
T Consensus        67 klk~PR~iillvkAG-~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GP--S  143 (487)
T KOG2653|consen   67 KLKKPRVIILLVKAG-APVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGP--S  143 (487)
T ss_pred             hcCCCcEEEEEeeCC-CcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCC--c
Confidence            245566777666422 2345678899999999888886443 33333221 2 22233346665542   1112222  1


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCC-----e--eEEEcC-Ccchhh----hhhh---HHHHHHHHHHHHc--CCCHHHHHH
Q 004891          458 IVRTERTSAQVILDLMTVGKIIKK-----V--PVVVGN-CTGFAV----NRAF---FPYSQSARLLVSL--GVDVFRIDS  520 (725)
Q Consensus       458 ii~~~~t~~e~~~~~~~l~~~lGk-----~--~v~v~d-~~Gfi~----nRl~---~a~~~Ea~~l~~~--Gv~~~dID~  520 (725)
                      ++||.  ++++-..+++++..+..     .  -.++++ ..|-.+    |-+=   +.++.|+..++..  |++-++|-.
T Consensus       144 lMpGg--~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~  221 (487)
T KOG2653|consen  144 LMPGG--SKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAE  221 (487)
T ss_pred             cCCCC--ChHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHH
Confidence            44554  78888888888876532     2  244554 344333    4442   4667799999987  578888888


Q ss_pred             HHHhc
Q 004891          521 AIRSF  525 (725)
Q Consensus       521 ~~~~~  525 (725)
                      ++..+
T Consensus       222 vF~~W  226 (487)
T KOG2653|consen  222 VFDDW  226 (487)
T ss_pred             HHHhh
Confidence            87433

>PRK04148 hypothetical protein; Provisional

Probab=97.24  E-value=0.0032  Score=57.62  Aligned_cols=94  Identities=17%  Similarity=0.133  Sum_probs=66.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  388 (725)
                      +||.+||+| -|.++|..|++.|++|++.|++++.++.+.+.           +. .     ...+.+ +..+.+.-+++
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-----------~~-~-----~v~dDl-f~p~~~~y~~a   78 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-----------GL-N-----AFVDDL-FNPNLEIYKNA   78 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----------CC-e-----EEECcC-CCCCHHHHhcC
Confidence            579999999 89999999999999999999999987776431           10 0     000001 12233556899


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (725)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (725)
                      |+|..+-|  +.-.+.-+-++.+.+..+.+|..-+
T Consensus        79 ~liysirp--p~el~~~~~~la~~~~~~~~i~~l~  111 (134)
T PRK04148         79 KLIYSIRP--PRDLQPFILELAKKINVPLIIKPLS  111 (134)
T ss_pred             CEEEEeCC--CHHHHHHHHHHHHHcCCCEEEEcCC
Confidence            99999887  4444566677888888888876433

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=97.22  E-value=0.0003  Score=74.29  Aligned_cols=97  Identities=28%  Similarity=0.328  Sum_probs=63.7

Q ss_pred             EEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCCCE
Q 004891          313 VIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM  390 (725)
Q Consensus       313 VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDl  390 (725)
                      |||+|.+|+++|..++..+.  +++++|++++.++.....+.+....... .           -.+. ..+++++++||+
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~-~-----------~~i~-~~~~~~~~daDi   67 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPT-P-----------KKIR-SGDYSDCKDADL   67 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCC-C-----------eEEe-cCCHHHHCCCCE
Confidence            69999999999999998887  7999999987765443333322110000 0           1222 356789999999


Q ss_pred             EEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891          391 VIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT  423 (725)
Q Consensus       391 VIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (725)
                      ||.+.-.              +..+.+++..++.++. |+++++..|
T Consensus        68 vVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvs  113 (299)
T TIGR01771        68 VVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFLVAT  113 (299)
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEeC
Confidence            9998732              3345556666777764 566555433

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=97.20  E-value=0.0026  Score=61.63  Aligned_cols=74  Identities=18%  Similarity=0.213  Sum_probs=47.4

Q ss_pred             eEEEEcCCCCcHHHH--HHHHHC----CCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-
Q 004891          310 KVAVIGGGLMGSGIA--TAHILN----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (725)
Q Consensus       310 kIaVIG~G~mG~~iA--~~l~~~----G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (725)
                      ||+|||+|..-.+.-  ..+.+.    +-+++++|+|+++++....-.+...    +....+        -++..++|. 
T Consensus         1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~----~~~~~~--------~~v~~ttd~~   68 (183)
T PF02056_consen    1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMV----EEAGAD--------LKVEATTDRR   68 (183)
T ss_dssp             EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHH----HHCTTS--------SEEEEESSHH
T ss_pred             CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHH----HhcCCC--------eEEEEeCCHH
Confidence            799999999876633  222322    3489999999999887654333332    221111        246667887 


Q ss_pred             ccccCCCEEEEec
Q 004891          383 SEFKDVDMVIEAV  395 (725)
Q Consensus       383 ~~l~~aDlVIeav  395 (725)
                      +++++||+||.++
T Consensus        69 eAl~gADfVi~~i   81 (183)
T PF02056_consen   69 EALEGADFVINQI   81 (183)
T ss_dssp             HHHTTESEEEE--
T ss_pred             HHhCCCCEEEEEe
Confidence            7899999999886

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.19  E-value=0.00058  Score=63.29  Aligned_cols=75  Identities=19%  Similarity=0.202  Sum_probs=52.8

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCc-EEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~-V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      -++|.|||+|-||.+++..|+..|.+ |++++|+.++++...+.+        ....+          .....++. +.+
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~--------~~~~~----------~~~~~~~~~~~~   73 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF--------GGVNI----------EAIPLEDLEEAL   73 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH--------TGCSE----------EEEEGGGHCHHH
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc--------Ccccc----------ceeeHHHHHHHH
Confidence            36899999999999999999999996 999999999877654321        00000          01112233 457


Q ss_pred             cCCCEEEEeccCChH
Q 004891          386 KDVDMVIEAVIESVP  400 (725)
Q Consensus       386 ~~aDlVIeavpe~~~  400 (725)
                      .++|+||.|.|-...
T Consensus        74 ~~~DivI~aT~~~~~   88 (135)
T PF01488_consen   74 QEADIVINATPSGMP   88 (135)
T ss_dssp             HTESEEEE-SSTTST
T ss_pred             hhCCeEEEecCCCCc
Confidence            889999999875443

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit

Probab=97.18  E-value=0.0056  Score=61.96  Aligned_cols=142  Identities=16%  Similarity=0.151  Sum_probs=85.0

Q ss_pred             CCCHHHHHHHHHHHHHH-hcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHH--HHHhhCCCcEEE
Q 004891           27 ALAIPIVAGLKDKFEEA-TSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV--NLIEDCKKPIVA  103 (725)
Q Consensus        27 al~~~~~~~l~~~l~~~-~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~kp~Ia  103 (725)
                      .++.+-...+...+... +++..+-+|.|-=.++ |-.|..-++.          -+......++.  ......+.|+|+
T Consensus        44 ~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG-~~~g~~aE~~----------G~~~a~A~l~~a~a~a~~~~vP~Is  112 (238)
T TIGR03134        44 EVGLDEALALAQAVLDVIEADDKRPIVVLVDTPS-QAYGRREELL----------GINQALAHLAKALALARLAGHPVIG  112 (238)
T ss_pred             cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC-CCCCHHHHHH----------HHHHHHHHHHHHHHHhhcCCCCEEE
Confidence            67877777788888775 4556666666653322 3333222111          11122222220  224456699999


Q ss_pred             EEcccccchhh-HHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcC--CCCCHHHHHHcCCc
Q 004891          104 AVEGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLS--KSITSEEGWKLGLI  180 (725)
Q Consensus       104 av~G~a~GgG~-~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g--~~~~a~eA~~~Glv  180 (725)
                      .|-|.++|||+ .+.+.+|.++|.+++.+       +.++.-+++..+-+-.  ..+.++.-+=  ...+++.+.+.|+|
T Consensus       113 vI~g~a~ggg~lamg~~ad~v~Alp~A~i-------~vm~~e~aa~I~~~~~--~~~~e~a~~~~~~a~~~~~~~~~G~v  183 (238)
T TIGR03134       113 LIYGKAISGAFLAHGLQADRIIALPGAMV-------HVMDLESMARVTKRSV--EELEALAKSSPVFAPGIENFVKLGGV  183 (238)
T ss_pred             EEeCCccHHHHHHHccCcCeEEEcCCcEE-------EecCHHHHHHHHccCH--hHHHHHHHhhhhhccCHHHHHhCCCc
Confidence            99999998876 44445888887766654       5555555554444433  3344443322  34577889999999


Q ss_pred             ceecCcch
Q 004891          181 DAVVTSEE  188 (725)
Q Consensus       181 ~~vv~~~~  188 (725)
                      |+|+++.+
T Consensus       184 d~vi~~~~  191 (238)
T TIGR03134       184 HALLDVAD  191 (238)
T ss_pred             cEEeCCCC
Confidence            99997554

Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>PTZ00325 malate dehydrogenase; Provisional

Probab=97.12  E-value=0.00049  Score=73.16  Aligned_cols=34  Identities=26%  Similarity=0.296  Sum_probs=30.1

Q ss_pred             CcceEEEEcC-CCCcHHHHHHHHHCC--CcEEEEeCC
Q 004891          307 GVRKVAVIGG-GLMGSGIATAHILNN--IYVVLKEVN  340 (725)
Q Consensus       307 ~~~kIaVIG~-G~mG~~iA~~l~~~G--~~V~~~d~~  340 (725)
                      +|+||+|||+ |.+|+.+|..++..+  .+++++|++
T Consensus         7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~   43 (321)
T PTZ00325          7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV   43 (321)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC
Confidence            5679999999 999999999999665  489999993

>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

Probab=97.12  E-value=0.0075  Score=65.14  Aligned_cols=153  Identities=23%  Similarity=0.278  Sum_probs=105.0

Q ss_pred             cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEE-cCCCCCcCCCCchhhhhccCCCcccccchhHHHHH
Q 004891           12 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLT-GNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV   90 (725)
Q Consensus        12 ~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~   90 (725)
                      +..|.++.++.    .+++...+.+.++++.++++.. .+|||. -.++.+                     .....+++
T Consensus        25 ~~~v~vi~i~g----~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ldTPGGl---------------------~~sm~~iv   78 (436)
T COG1030          25 EKKVYVIEIDG----AIDPASADYLQRALQSAEEENA-AAVVLELDTPGGL---------------------LDSMRQIV   78 (436)
T ss_pred             CCeEEEEEecC----ccCHHHHHHHHHHHHHHHhCCC-cEEEEEecCCCch---------------------HHHHHHHH
Confidence            34677777754    5999999999999999998753 344442 222111                     12233566


Q ss_pred             HHHHhhCCCcEEEEEc---ccccchhhHHhhhcCEEEeeCCceEeCcccccCC--CCCchh--hchHhhh------h--C
Q 004891           91 VNLIEDCKKPIVAAVE---GLALGGGLELAMGCHARIAAPKTQLGLPELTLGV--IPGFGG--TQRLPRL------V--G  155 (725)
Q Consensus        91 ~~~l~~~~kp~Iaav~---G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl--~p~~g~--~~~l~r~------v--G  155 (725)
                       ++|.+++.||+..|.   +.|..+|..++++||+..|++.+.+|-...-.+-  .+..-.  ...+..+      =  -
T Consensus        79 -~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN  157 (436)
T COG1030          79 -RAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRN  157 (436)
T ss_pred             -HHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcCCC
Confidence             779999999888883   4699999999999999999999999765443222  111111  1112111      1  2


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCCcceecC-cchHHH
Q 004891          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVT-SEELLK  191 (725)
Q Consensus       156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~-~~~l~~  191 (725)
                      ...|.+++.....++++||++.|++|-+.. ..|+..
T Consensus       158 ~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~~~ell~  194 (436)
T COG1030         158 PTWAERFVTENLSLTAEEALRQGVIDLIARDLNELLK  194 (436)
T ss_pred             hHHHHHHhhhccCCChhHHHhcCccccccCCHHHHHH
Confidence            366778999999999999999999998873 334433

>PRK10949 protease 4; Provisional

Probab=97.11  E-value=0.0038  Score=72.08  Aligned_cols=105  Identities=17%  Similarity=0.179  Sum_probs=70.7

Q ss_pred             cCcEEEEEeCCC-----C-CCCCC---------------HHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhh
Q 004891           12 NDGVAIITLINP-----P-VNALA---------------IPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF   70 (725)
Q Consensus        12 ~~~v~~i~l~~p-----~-~Nal~---------------~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~   70 (725)
                      ++++.+|.++.+     + .|.++               .-.+.++.++++.+.+|+.|++|||.-.+..   |.....+
T Consensus        55 ~~~vL~ldl~G~lve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~div~~i~~Aa~D~rIkgivL~i~s~g---G~~~a~~  131 (618)
T PRK10949         55 SRGALLLDISGVIVDKPSSSNKLSQLGRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVLDLKNFA---GADQPSM  131 (618)
T ss_pred             CCeEEEEECCCcccCCCCCCCcHHHHhhhhcccCCCccccccHHHHHHHHHHHhcCCCceEEEEEeCCCC---CccHHHH
Confidence            567888888643     1 23222               1335689999999999999999999864321   1221111


Q ss_pred             hhccCCCcccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCc
Q 004891           71 QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLP  134 (725)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~p  134 (725)
                                   +.+...+ ..+....|||||. ...+.-+++-||.+||.+++.+.+.+++.
T Consensus       132 -------------~eI~~ai-~~fk~sGKpVvA~-~~~~~s~~YyLASaAD~I~l~P~G~v~~~  180 (618)
T PRK10949        132 -------------QYIGKAL-REFRDSGKPVYAV-GDSYSQGQYYLASFANKIYLSPQGVVDLH  180 (618)
T ss_pred             -------------HHHHHHH-HHHHHhCCeEEEE-ecCccchhhhhhhhCCEEEECCCceEEEe
Confidence                         1122334 3467788999985 44445679999999999999988877543

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=97.09  E-value=0.0016  Score=71.43  Aligned_cols=86  Identities=17%  Similarity=0.152  Sum_probs=60.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  388 (725)
                      ++|+|+|+|.+|..+|..+...|.+|+++|+++.+++.+..           .|.             ......+.++++
T Consensus       203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~-----------~G~-------------~~~~~~e~v~~a  258 (413)
T cd00401         203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM-----------EGY-------------EVMTMEEAVKEG  258 (413)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh-----------cCC-------------EEccHHHHHcCC
Confidence            58999999999999999999999999999999988766532           121             001111456789


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEec
Q 004891          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATN  422 (725)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~  422 (725)
                      |+||+|......+.    ......++++.+++..
T Consensus       259 DVVI~atG~~~~i~----~~~l~~mk~Ggilvnv  288 (413)
T cd00401         259 DIFVTTTGNKDIIT----GEHFEQMKDGAIVCNI  288 (413)
T ss_pred             CEEEECCCCHHHHH----HHHHhcCCCCcEEEEe
Confidence            99999986322222    2345567888887643

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.06  E-value=0.0011  Score=68.66  Aligned_cols=70  Identities=14%  Similarity=0.225  Sum_probs=54.3

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      ++|+|||. |.||.++|..|.++|+.|++|.....                                      ++ +.++
T Consensus       159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~--------------------------------------~l~~~~~  200 (284)
T PRK14179        159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTR--------------------------------------NLAEVAR  200 (284)
T ss_pred             CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCC--------------------------------------CHHHHHh
Confidence            68999999 99999999999999999999942211                                      11 3467


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (725)
                      +||+||.|++..-.++..       ++++++++++.+
T Consensus       201 ~ADIVI~avg~~~~v~~~-------~ik~GavVIDvg  230 (284)
T PRK14179        201 KADILVVAIGRGHFVTKE-------FVKEGAVVIDVG  230 (284)
T ss_pred             hCCEEEEecCccccCCHH-------HccCCcEEEEec
Confidence            899999999855554443       278999988654

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=97.06  E-value=0.0012  Score=70.48  Aligned_cols=101  Identities=17%  Similarity=0.153  Sum_probs=63.0

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCC-------cEEEEeCChHH--HHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccc
Q 004891          310 KVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV  379 (725)
Q Consensus       310 kIaVIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~e~--~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~  379 (725)
                      ||+|||+ |.+|+++|..++..|.       +++++|++++.  ++.....+.+             ... .....+..+
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d-------------~~~-~~~~~~~~~   66 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMD-------------CAF-PLLDGVVPT   66 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhc-------------ccc-hhcCceecc
Confidence            6999999 9999999999998655       59999996542  2111000100             000 011223333


Q ss_pred             -cCcccccCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891          380 -LDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS  424 (725)
Q Consensus       380 -~~~~~l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~tS  424 (725)
                       ++++++++||+||.+.--              +..+.+++..+|.++.+++++++..|.
T Consensus        67 ~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsN  126 (324)
T TIGR01758        67 HDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGN  126 (324)
T ss_pred             CChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence             346899999999987621              233455666678887667777765443

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=97.03  E-value=0.0013  Score=70.05  Aligned_cols=102  Identities=16%  Similarity=0.088  Sum_probs=71.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  388 (725)
                      +++||||.|.+|..+|+.+.--|.+|..||+++.. +...            .            .......-.+.+++|
T Consensus       147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~-~~~~------------~------------~~~~y~~l~ell~~s  201 (324)
T COG1052         147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNP-EAEK------------E------------LGARYVDLDELLAES  201 (324)
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCCh-HHHh------------h------------cCceeccHHHHHHhC
Confidence            78999999999999999999778999999998741 1100            0            011222212668999


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC-C--CChHHHhcccC
Q 004891          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTS  436 (725)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~  436 (725)
                      |+|+..+|-..+...-+=.+..+.++++++++ |++ +  +....+.+.+.
T Consensus       202 Dii~l~~Plt~~T~hLin~~~l~~mk~ga~lV-NtaRG~~VDe~ALi~AL~  251 (324)
T COG1052         202 DIISLHCPLTPETRHLINAEELAKMKPGAILV-NTARGGLVDEQALIDALK  251 (324)
T ss_pred             CEEEEeCCCChHHhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence            99999999777755555567778899999885 565 3  33334444443

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=97.02  E-value=0.0038  Score=69.09  Aligned_cols=100  Identities=21%  Similarity=0.270  Sum_probs=65.4

Q ss_pred             ceEEEEcCCCC-cHHHHHHHHHC-----CCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc
Q 004891          309 RKVAVIGGGLM-GSGIATAHILN-----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (725)
Q Consensus       309 ~kIaVIG~G~m-G~~iA~~l~~~-----G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (725)
                      .||+|||+|.- ...+...|++.     +-+|+++|+++++++....-.    .+..+....+        -++..|+|.
T Consensus         1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~----~~~~~~~g~~--------~~v~~ttD~   68 (425)
T cd05197           1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIA----KRYVEEVGAD--------IKFEKTMDL   68 (425)
T ss_pred             CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHH----HHHHHhhCCC--------eEEEEeCCH
Confidence            48999999873 33444555543     458999999999987743322    2222221111        246677787


Q ss_pred             -ccccCCCEEEEecc----------------------------------CChHHHHHHHHHHHHhCCCCeEEEe
Q 004891          383 -SEFKDVDMVIEAVI----------------------------------ESVPLKQKIFSELEKACPPHCILAT  421 (725)
Q Consensus       383 -~~l~~aDlVIeavp----------------------------------e~~~~k~~v~~~l~~~~~~~~ii~s  421 (725)
                       +++++||+||.++-                                  -+..+..++.+++.+++ |+++++.
T Consensus        69 ~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~-P~a~lin  141 (425)
T cd05197          69 EDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLS-PDAWYLN  141 (425)
T ss_pred             HHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhC-CCcEEEe
Confidence             88999999998862                                  13446667778888876 5666653

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>PLN02306 hydroxypyruvate reductase

Probab=97.01  E-value=0.0013  Score=71.72  Aligned_cols=127  Identities=19%  Similarity=0.179  Sum_probs=74.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHH-HCCCcEEEEeCChHH-HHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          309 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~-~~G~~V~~~d~~~e~-~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      ++|||||.|.+|+.+|..+. .-|.+|..||+.... .+...+...   ......+...        .......++ +.+
T Consensus       166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~---~~l~~~~~~~--------~~~~~~~~L~ell  234 (386)
T PLN02306        166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYG---QFLKANGEQP--------VTWKRASSMEEVL  234 (386)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhc---cccccccccc--------ccccccCCHHHHH
Confidence            68999999999999999986 569999999997642 111000000   0000000000        011112345 567


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC-C--CChHHHhcccCC-CCcEEEEecC
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTSS-QDRIIGAHFF  447 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~~-~~r~ig~h~~  447 (725)
                      +.||+|+.++|-..+...-+=.+..+.++++++++ |++ +  +.-..+.+.+.. +-...++.-|
T Consensus       235 ~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lI-N~aRG~lVDe~AL~~AL~sg~i~gAaLDVf  299 (386)
T PLN02306        235 READVISLHPVLDKTTYHLINKERLALMKKEAVLV-NASRGPVIDEVALVEHLKANPMFRVGLDVF  299 (386)
T ss_pred             hhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHHhCCeeEEEEeCC
Confidence            99999999999766554444456778899999886 444 3  333345455432 2233444444

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.99  E-value=0.0023  Score=68.29  Aligned_cols=92  Identities=21%  Similarity=0.157  Sum_probs=58.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCC-CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      ++|+|||+|.||..++..+...| .+|+++|+++++.+...+.+          |.           .....++. +.+.
T Consensus       179 ~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~----------g~-----------~~~~~~~~~~~l~  237 (311)
T cd05213         179 KKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL----------GG-----------NAVPLDELLELLN  237 (311)
T ss_pred             CEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc----------CC-----------eEEeHHHHHHHHh
Confidence            68999999999999999999865 68999999998765543211          10           00001122 4567


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhC-CCCeEEEecC
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKAC-PPHCILATNT  423 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~-~~~~ii~s~t  423 (725)
                      ++|+||.|++.+..  ..++..+.+.. ..+.++++.+
T Consensus       238 ~aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viDla  273 (311)
T cd05213         238 EADVVISATGAPHY--AKIVERAMKKRSGKPRLIVDLA  273 (311)
T ss_pred             cCCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEEeC
Confidence            89999999985544  33344433222 2455665543

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK07189 malonate decarboxylase subunit beta; Reviewed

Probab=96.98  E-value=0.05  Score=56.85  Aligned_cols=96  Identities=19%  Similarity=0.282  Sum_probs=63.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCC----CceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCc
Q 004891           25 VNALAIPIVAGLKDKFEEATSRD----DVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKP  100 (725)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~~~----~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp  100 (725)
                      --+++....+.+..+++.+.++.    .+-+|.|.-.|+     +.+.+-..    . ...+.+ .+..+ ..+... .|
T Consensus        81 GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGG-----aRlqEg~~----~-L~~~a~-i~~~~-~~ls~~-VP  147 (301)
T PRK07189         81 GGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGG-----VRLQEANA----G-LAAIAE-IMRAI-VDLRAA-VP  147 (301)
T ss_pred             CcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCC-----cCccchHH----H-HHHHHH-HHHHH-HHHhCC-CC
Confidence            47888888999999999887654    256677654332     23322110    0 000111 11222 124444 99


Q ss_pred             EEEEEccc--ccchhhHHhhhcCEEEeeCCceEeC
Q 004891          101 IVAAVEGL--ALGGGLELAMGCHARIAAPKTQLGL  133 (725)
Q Consensus       101 ~Iaav~G~--a~GgG~~lalacD~~ia~~~a~~~~  133 (725)
                      +|+++.|.  |+||+...+.+||++||++++++++
T Consensus       148 ~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igl  182 (301)
T PRK07189        148 VIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGL  182 (301)
T ss_pred             EEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEec
Confidence            99999999  9999999999999999999888876

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.98  E-value=0.0017  Score=71.33  Aligned_cols=87  Identities=22%  Similarity=0.190  Sum_probs=61.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  388 (725)
                      ++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+..           .|             ....+-.+.++++
T Consensus       213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~-----------~G-------------~~v~~l~eal~~a  268 (425)
T PRK05476        213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM-----------DG-------------FRVMTMEEAAELG  268 (425)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh-----------cC-------------CEecCHHHHHhCC
Confidence            68999999999999999999999999999999877543321           11             1111111456789


Q ss_pred             CEEEEeccCChHHHHHHHH-HHHHhCCCCeEEEecCC
Q 004891          389 DMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTS  424 (725)
Q Consensus       389 DlVIeavpe~~~~k~~v~~-~l~~~~~~~~ii~s~tS  424 (725)
                      |+||+|...     ..++. +....++++++++....
T Consensus       269 DVVI~aTG~-----~~vI~~~~~~~mK~GailiNvG~  300 (425)
T PRK05476        269 DIFVTATGN-----KDVITAEHMEAMKDGAILANIGH  300 (425)
T ss_pred             CEEEECCCC-----HHHHHHHHHhcCCCCCEEEEcCC
Confidence            999998742     12343 45666889998865433

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=96.98  E-value=0.002  Score=69.09  Aligned_cols=93  Identities=10%  Similarity=-0.001  Sum_probs=61.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH--CCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          309 RKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~--~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      ++++|||+|.||...+..+..  ...+|.+||+++++.+...+.+++       .+.           .+...++. +++
T Consensus       129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~-------~g~-----------~v~~~~~~~eav  190 (325)
T TIGR02371       129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASD-------YEV-----------PVRAATDPREAV  190 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------hCC-----------cEEEeCCHHHHh
Confidence            679999999999997766654  356899999999998765543321       110           12334444 678


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~  425 (725)
                      ++||+||.|+|....    ++.  .+.++|++.|....|.
T Consensus       191 ~~aDiVitaT~s~~P----~~~--~~~l~~g~~v~~vGs~  224 (325)
T TIGR02371       191 EGCDILVTTTPSRKP----VVK--ADWVSEGTHINAIGAD  224 (325)
T ss_pred             ccCCEEEEecCCCCc----Eec--HHHcCCCCEEEecCCC
Confidence            999999999975432    221  2346788877654443

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>TIGR00936 ahcY adenosylhomocysteinase

Probab=96.97  E-value=0.0018  Score=70.75  Aligned_cols=86  Identities=23%  Similarity=0.184  Sum_probs=60.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  388 (725)
                      ++|+|+|.|.+|..+|+.+...|.+|+++|+++.+...+.           ..|.             ...+..+.++++
T Consensus       196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~-----------~~G~-------------~v~~leeal~~a  251 (406)
T TIGR00936       196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAA-----------MDGF-------------RVMTMEEAAKIG  251 (406)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH-----------hcCC-------------EeCCHHHHHhcC
Confidence            6899999999999999999999999999999987643332           1121             111111456789


Q ss_pred             CEEEEeccCChHHHHHHHH-HHHHhCCCCeEEEecC
Q 004891          389 DMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNT  423 (725)
Q Consensus       389 DlVIeavpe~~~~k~~v~~-~l~~~~~~~~ii~s~t  423 (725)
                      |+||++...     ..++. +....++++++++..+
T Consensus       252 DVVItaTG~-----~~vI~~~~~~~mK~GailiN~G  282 (406)
T TIGR00936       252 DIFITATGN-----KDVIRGEHFENMKDGAIVANIG  282 (406)
T ss_pred             CEEEECCCC-----HHHHHHHHHhcCCCCcEEEEEC
Confidence            999998753     22332 3556688999886433

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase

Probab=96.96  E-value=0.017  Score=60.99  Aligned_cols=165  Identities=12%  Similarity=0.011  Sum_probs=89.2

Q ss_pred             CCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCC-CCHHHHHHhhcCcccccCcccccCCCEEEEecc
Q 004891          318 LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDYSEFKDVDMVIEAVI  396 (725)
Q Consensus       318 ~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~l~~aDlVIeavp  396 (725)
                      .||+.+|..|+++|++|++++|+ +..+...           +.|. +....-......+..+++++.+..+|+||.|++
T Consensus         1 aiG~~~a~~L~~~G~~V~l~~r~-~~~~~i~-----------~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vK   68 (293)
T TIGR00745         1 AVGSLYGAYLARAGHDVTLLARG-EQLEALN-----------QEGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVK   68 (293)
T ss_pred             CchHHHHHHHHhCCCcEEEEecH-HHHHHHH-----------HCCcEEEecCCcEEEcccccccChhhcCCCCEEEEecc
Confidence            37999999999999999999997 4444322           1121 000000000002233445555778999999998


Q ss_pred             CChHHHHHHHHHHHHhCCCCeEEEecCCCCChHH-HhcccCCCCcEEEE-ecCCCCCCCCe-ee------EecCCC-CCH
Q 004891          397 ESVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEKTSSQDRIIGA-HFFSPAHVMPL-LE------IVRTER-TSA  466 (725)
Q Consensus       397 e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~-l~~~~~~~~r~ig~-h~~~p~~~~~l-ve------ii~~~~-t~~  466 (725)
                        ..-...+++.+.+.+.++++|++...++...+ +...+. ..++++. -++......|. ++      +.-|.. .+.
T Consensus        69 --s~~~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~-~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~  145 (293)
T TIGR00745        69 --AYQTEEAAALLLPLIGKNTKVLFLQNGLGHEERLRELLP-ARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGEN  145 (293)
T ss_pred             --chhHHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhC-ccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCch
Confidence              33456778889999999888887777765443 334333 2233322 11111111111 11      111111 112


Q ss_pred             HHHHHHHHHHHHcCCeeEEEcCCcchhhhhh
Q 004891          467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRA  497 (725)
Q Consensus       467 e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl  497 (725)
                      +..+.+..++...|.......|..+.+...+
T Consensus       146 ~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl  176 (293)
T TIGR00745       146 EAVEALAELLNEAGIPAELHGDILAAIWKKL  176 (293)
T ss_pred             HHHHHHHHHHHhCCCCCEecchHHHHHHHHH
Confidence            4556666677766655555556444444433

This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=96.95  E-value=0.0057  Score=62.61  Aligned_cols=144  Identities=18%  Similarity=0.172  Sum_probs=87.1

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHH-HHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~-~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      -+||+|||.|.-|.+-|.+|..+|.+|++--+.... .+++.           +.|             ....+-.++++
T Consensus        18 gK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~-----------~dG-------------f~V~~v~ea~k   73 (338)
T COG0059          18 GKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAK-----------EDG-------------FKVYTVEEAAK   73 (338)
T ss_pred             CCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHH-----------hcC-------------CEeecHHHHhh
Confidence            369999999999999999999999998876554333 23322           222             33233337889


Q ss_pred             CCCEEEEeccCChHHHHHHHH-HHHHhCCCCeEEEecCCCCChHHHhcccCCCC--cEEEEecCCCCC----------CC
Q 004891          387 DVDMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTSTIDLNIVGEKTSSQD--RIIGAHFFSPAH----------VM  453 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~-~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~--r~ig~h~~~p~~----------~~  453 (725)
                      .+|+|+.-+|+..  -.+++. +|.+.++.+..+.- +.++.+..-  ....|.  .++=+-|-.|-+          ..
T Consensus        74 ~ADvim~L~PDe~--q~~vy~~~I~p~Lk~G~aL~F-aHGfNihf~--~i~ppkdvdV~MVAPKgPG~~VR~~y~~G~Gv  148 (338)
T COG0059          74 RADVVMILLPDEQ--QKEVYEKEIAPNLKEGAALGF-AHGFNIHFG--LIVPPKDVDVIMVAPKGPGHLVRREYKEGFGV  148 (338)
T ss_pred             cCCEEEEeCchhh--HHHHHHHHhhhhhcCCceEEe-ccccceecc--eecCCccCcEEEEcCCCCcHHHHHHHHccCCc
Confidence            9999999999444  347776 89999999987753 334433211  111121  111121212211          11


Q ss_pred             CeeeEecCCCCCHHHHHHHHHHHHHcCC
Q 004891          454 PLLEIVRTERTSAQVILDLMTVGKIIKK  481 (725)
Q Consensus       454 ~lveii~~~~t~~e~~~~~~~l~~~lGk  481 (725)
                      |.+-.+. ...+..+.+.+..+.+.+|.
T Consensus       149 P~LiAV~-qD~sG~a~~~Ala~AkgiGg  175 (338)
T COG0059         149 PALIAVH-QDASGKALDIALAYAKGIGG  175 (338)
T ss_pred             eeEEEEE-eCCCchHHHHHHHHHHhcCC
Confidence            2222222 33356678888888888884

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=96.94  E-value=0.0012  Score=68.93  Aligned_cols=41  Identities=15%  Similarity=0.199  Sum_probs=36.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~  349 (725)
                      ++|.|+|+|.+|.+++..|+..|++|+++||++++++...+
T Consensus       118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~  158 (270)
T TIGR00507       118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAE  158 (270)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            57999999999999999999999999999999887765543

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.90  E-value=0.0015  Score=70.56  Aligned_cols=78  Identities=27%  Similarity=0.262  Sum_probs=55.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCC-CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccccc--Cc-c
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL--DY-S  383 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~--~~-~  383 (725)
                      |+||.|||+|.+|+.+|..|++.| .+|++-||+.++++++.+....         .++..+       +...+  .+ +
T Consensus         1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~---------~v~~~~-------vD~~d~~al~~   64 (389)
T COG1748           1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG---------KVEALQ-------VDAADVDALVA   64 (389)
T ss_pred             CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc---------cceeEE-------ecccChHHHHH
Confidence            578999999999999999999999 8999999999998887542111         111000       00011  11 4


Q ss_pred             cccCCCEEEEeccCChHH
Q 004891          384 EFKDVDMVIEAVIESVPL  401 (725)
Q Consensus       384 ~l~~aDlVIeavpe~~~~  401 (725)
                      .+++.|+||.|+|.....
T Consensus        65 li~~~d~VIn~~p~~~~~   82 (389)
T COG1748          65 LIKDFDLVINAAPPFVDL   82 (389)
T ss_pred             HHhcCCEEEEeCCchhhH
Confidence            568889999999954443

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=96.89  E-value=0.004  Score=68.87  Aligned_cols=75  Identities=20%  Similarity=0.239  Sum_probs=48.8

Q ss_pred             ceEEEEcCCCCcH-HHHHHHHHC-----CCcEEEEeCC-hHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccC
Q 004891          309 RKVAVIGGGLMGS-GIATAHILN-----NIYVVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (725)
Q Consensus       309 ~kIaVIG~G~mG~-~iA~~l~~~-----G~~V~~~d~~-~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (725)
                      .||+|||+|..-+ .+...|++.     +-+|+++|++ +++++....-.++    ..+....+        -.+..++|
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~----~~~~~~~~--------~~v~~t~d   68 (419)
T cd05296           1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKR----MVKKAGLP--------IKVHLTTD   68 (419)
T ss_pred             CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHH----HHHhhCCC--------eEEEEeCC
Confidence            4899999988633 344555542     3589999999 7887664332222    22221110        13666777


Q ss_pred             c-ccccCCCEEEEec
Q 004891          382 Y-SEFKDVDMVIEAV  395 (725)
Q Consensus       382 ~-~~l~~aDlVIeav  395 (725)
                      . +++.+||+||.++
T Consensus        69 ~~~al~gadfVi~~~   83 (419)
T cd05296          69 RREALEGADFVFTQI   83 (419)
T ss_pred             HHHHhCCCCEEEEEE
Confidence            7 7899999999887

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.89  E-value=0.0016  Score=65.33  Aligned_cols=32  Identities=31%  Similarity=0.463  Sum_probs=30.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN  340 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~  340 (725)
                      .+|.|||+|.+|+.+|..|++.|. +++++|.+
T Consensus        29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            579999999999999999999998 59999988

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=96.89  E-value=0.0041  Score=56.44  Aligned_cols=99  Identities=21%  Similarity=0.198  Sum_probs=59.3

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHC-CCcEEEE-eCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccc-
Q 004891          310 KVAVIGG-GLMGSGIATAHILN-NIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF-  385 (725)
Q Consensus       310 kIaVIG~-G~mG~~iA~~l~~~-G~~V~~~-d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l-  385 (725)
                      ||+|||+ |.+|..++..+... +++++.+ +++.+..+....          ..+.+.        ..+....+.+.+ 
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~----------~~~~~~--------~~~~~~~~~~~~~   62 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSE----------AGPHLK--------GEVVLELEPEDFE   62 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHH----------HCcccc--------cccccccccCChh
Confidence            6899995 99999999999984 8887766 654322222110          000010        000001111222 


Q ss_pred             -cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh
Q 004891          386 -KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL  428 (725)
Q Consensus       386 -~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~  428 (725)
                       .++|+||.|+|.+...  ++...+...+.+++++++.+|++..
T Consensus        63 ~~~~DvV~~~~~~~~~~--~~~~~~~~~~~~g~~viD~s~~~~~  104 (122)
T smart00859       63 ELAVDIVFLALPHGVSK--EIAPLLPKAAEAGVKVIDLSSAFRM  104 (122)
T ss_pred             hcCCCEEEEcCCcHHHH--HHHHHHHhhhcCCCEEEECCccccC
Confidence             4899999999965443  4444444556889999988887664

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK12552 ATP-dependent Clp protease-like protein; Reviewed

Probab=96.88  E-value=0.022  Score=56.85  Aligned_cols=143  Identities=20%  Similarity=0.222  Sum_probs=92.7

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceE--EEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEE
Q 004891           28 LAIPIVAGLKDKFEEATSRDDVKA--IVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (725)
Q Consensus        28 l~~~~~~~l~~~l~~~~~~~~v~~--vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav  105 (725)
                      .+.++.+.+...|-.++.++..+-  +-|.+.|+...+|-=+...             .....++ +.|...+-||...+
T Consensus        49 ~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v-------------~~glaIy-D~m~~ik~~V~Tv~  114 (222)
T PRK12552         49 VGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFE-------------TEAFAIC-DTMRYIKPPVHTIC  114 (222)
T ss_pred             hhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCcccccccccc-------------ccHHHHH-HHHHhcCCCeEEEE
Confidence            344488888888888865543332  3335555554444111000             1123455 66888888999999


Q ss_pred             cccccchhhHHhhhcCE--EEeeCCceEeCcccccCCCCCchhhc-----------------hHhhhhC--HHHHHHHHH
Q 004891          106 EGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQ-----------------RLPRLVG--LSKAIEMML  164 (725)
Q Consensus       106 ~G~a~GgG~~lalacD~--~ia~~~a~~~~pe~~~Gl~p~~g~~~-----------------~l~r~vG--~~~a~~l~l  164 (725)
                      -|.|.+.+.-|++++|-  |++.+++++-+....-|.. + -.+.                 .+...-|  .....+++-
T Consensus       115 ~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~-G-~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d~~  192 (222)
T PRK12552        115 IGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR-G-QATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKDTD  192 (222)
T ss_pred             EeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc-c-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhc
Confidence            99999999999999995  9999999998776654431 1 1111                 1111122  233445555


Q ss_pred             cCCCCCHHHHHHcCCcceecCc
Q 004891          165 LSKSITSEEGWKLGLIDAVVTS  186 (725)
Q Consensus       165 ~g~~~~a~eA~~~Glv~~vv~~  186 (725)
                      ....++|+||++.||||+|+.+
T Consensus       193 rd~wmsA~EA~eyGliD~Ii~~  214 (222)
T PRK12552        193 RMFYLTPQEAKEYGLIDRVLES  214 (222)
T ss_pred             CCCcCCHHHHHHcCCCcEEecc
Confidence            6678899999999999999854

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=96.86  E-value=0.0061  Score=67.65  Aligned_cols=75  Identities=23%  Similarity=0.257  Sum_probs=49.7

Q ss_pred             ceEEEEcCCCC-cHHHHHHHHHC-----CCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc
Q 004891          309 RKVAVIGGGLM-GSGIATAHILN-----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (725)
Q Consensus       309 ~kIaVIG~G~m-G~~iA~~l~~~-----G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (725)
                      +||+|||+|.. +..+...+++.     +-+|+++|+++++++....    ...+..++...+        -++..|+|.
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~----l~~~~~~~~g~~--------~~v~~Ttdr   68 (437)
T cd05298           1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAE----AVKILFKENYPE--------IKFVYTTDP   68 (437)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHH----HHHHHHHhhCCC--------eEEEEECCH
Confidence            58999999874 22344445433     4589999999999877433    223333321111        246677787


Q ss_pred             -ccccCCCEEEEec
Q 004891          383 -SEFKDVDMVIEAV  395 (725)
Q Consensus       383 -~~l~~aDlVIeav  395 (725)
                       +++++||+||.++
T Consensus        69 ~eAl~gADfVi~~i   82 (437)
T cd05298          69 EEAFTDADFVFAQI   82 (437)
T ss_pred             HHHhCCCCEEEEEe
Confidence             8899999999887

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=96.84  E-value=0.0049  Score=60.44  Aligned_cols=91  Identities=19%  Similarity=0.223  Sum_probs=62.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHC--CC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          310 KVAVIGGGLMGSGIATAHILN--NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~--G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      ||++||+|.+|..+...+...  .+ -|.+||++.+++..+.+.                      .+. ...+++ +.+
T Consensus         2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~----------------------~~~-~~~s~ide~~   58 (255)
T COG1712           2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEAS----------------------VGR-RCVSDIDELI   58 (255)
T ss_pred             eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhh----------------------cCC-CccccHHHHh
Confidence            799999999999999877643  24 578999999987654321                      111 123555 445


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID  427 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~  427 (725)
                      ++.|+|+||..  .+..+++.-++.+. .-++||+| ++.+.
T Consensus        59 ~~~DlvVEaAS--~~Av~e~~~~~L~~-g~d~iV~S-VGALa   96 (255)
T COG1712          59 AEVDLVVEAAS--PEAVREYVPKILKA-GIDVIVMS-VGALA   96 (255)
T ss_pred             hccceeeeeCC--HHHHHHHhHHHHhc-CCCEEEEe-chhcc
Confidence            99999999997  66666666665442 35677765 44554

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=96.81  E-value=0.0036  Score=66.04  Aligned_cols=98  Identities=10%  Similarity=0.025  Sum_probs=68.8

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      .-++|+|+|+|.+|..+|+.|...|..+.-+.|++..-+...+.           +             ....+..+.+.
T Consensus       161 ~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~-----------~-------------~~~~d~~~~~~  216 (336)
T KOG0069|consen  161 EGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEY-----------Y-------------AEFVDIEELLA  216 (336)
T ss_pred             cCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHh-----------c-------------ccccCHHHHHh
Confidence            34799999999999999999999994455556655543332211           0             00122236689


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL  428 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~  428 (725)
                      ++|+|+.|.|-..+...-+=+++...++++++|+...=+-.+
T Consensus       217 ~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~ii  258 (336)
T KOG0069|consen  217 NSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAII  258 (336)
T ss_pred             hCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccc
Confidence            999999999977776666667888999999988754444333

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=96.80  E-value=0.0022  Score=70.92  Aligned_cols=88  Identities=24%  Similarity=0.307  Sum_probs=61.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||.|.+|..+|..+...|.+|+++|+++.....+.           ..|             .. ..++ +.++.
T Consensus       255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~-----------~~G-------------~~-~~~leell~~  309 (476)
T PTZ00075        255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAA-----------MEG-------------YQ-VVTLEDVVET  309 (476)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHH-----------hcC-------------ce-eccHHHHHhc
Confidence            6899999999999999999999999999999987643321           111             11 1122 45788


Q ss_pred             CCEEEEeccCChHHHHHHH-HHHHHhCCCCeEEEecCCCCC
Q 004891          388 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTID  427 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~-~~l~~~~~~~~ii~s~tS~~~  427 (725)
                      +|+||.|...     ..++ .+..+.++++++++ |++...
T Consensus       310 ADIVI~atGt-----~~iI~~e~~~~MKpGAiLI-NvGr~d  344 (476)
T PTZ00075        310 ADIFVTATGN-----KDIITLEHMRRMKNNAIVG-NIGHFD  344 (476)
T ss_pred             CCEEEECCCc-----ccccCHHHHhccCCCcEEE-EcCCCc
Confidence            9999998642     2334 34556678999886 445443

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=96.77  E-value=0.0016  Score=68.31  Aligned_cols=72  Identities=15%  Similarity=0.192  Sum_probs=51.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      ++|.|||+|.+|++++..|+..|. +|+++||+.++++...+.+....      ..          ..+....+. +.+.
T Consensus       128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~------~~----------~~~~~~~~~~~~~~  191 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARF------PA----------ARATAGSDLAAALA  191 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhC------CC----------eEEEeccchHhhhC
Confidence            689999999999999999999998 79999999988776544332110      00          001111222 3567


Q ss_pred             CCCEEEEecc
Q 004891          387 DVDMVIEAVI  396 (725)
Q Consensus       387 ~aDlVIeavp  396 (725)
                      ++|+||.|+|
T Consensus       192 ~aDiVInaTp  201 (284)
T PRK12549        192 AADGLVHATP  201 (284)
T ss_pred             CCCEEEECCc
Confidence            8999999987

>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]

Probab=96.75  E-value=0.0058  Score=61.36  Aligned_cols=106  Identities=25%  Similarity=0.365  Sum_probs=70.0

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l  385 (725)
                      ..||.|||.|..|.+.|..++..|.  ++.++|.++++++-..=.++        .|..     =-...++....|+..-
T Consensus        20 ~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLq--------H~s~-----f~~~~~V~~~~Dy~~s   86 (332)
T KOG1495|consen   20 HNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQ--------HGSA-----FLSTPNVVASKDYSVS   86 (332)
T ss_pred             CceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhc--------cccc-----cccCCceEecCccccc
Confidence            5799999999999999999999987  89999999987654321111        1100     0011356667788888


Q ss_pred             cCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 004891          386 KDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTID  427 (725)
Q Consensus       386 ~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~  427 (725)
                      +++++||..+.-              +.++.+.++.++.++ +|++++...+....
T Consensus        87 a~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~y-Spd~~llvvSNPVD  141 (332)
T KOG1495|consen   87 ANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKY-SPDCILLVVSNPVD  141 (332)
T ss_pred             CCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecCchH
Confidence            999999988731              233444444455554 56776654444333

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=96.74  E-value=0.0052  Score=62.67  Aligned_cols=85  Identities=15%  Similarity=0.087  Sum_probs=55.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCC---CcE-EEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNN---IYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G---~~V-~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (725)
                      .||+|||+|.||..++..+.+.+   +++ .+++++++..+...+                         .....++++.
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~-------------------------~~~~~~~l~~   57 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAG-------------------------RVALLDGLPG   57 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhc-------------------------cCcccCCHHH
Confidence            68999999999999999987643   443 467887755443211                         1223445544


Q ss_pred             --ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEe
Q 004891          385 --FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT  421 (725)
Q Consensus       385 --l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s  421 (725)
                        ...+|+|+||..  .+..++.-..+.+. ..+.++.|
T Consensus        58 ll~~~~DlVVE~A~--~~av~e~~~~iL~~-g~dlvv~S   93 (267)
T PRK13301         58 LLAWRPDLVVEAAG--QQAIAEHAEGCLTA-GLDMIICS   93 (267)
T ss_pred             HhhcCCCEEEECCC--HHHHHHHHHHHHhc-CCCEEEEC
Confidence              377999999997  66666666655432 23444444

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.74  E-value=0.0084  Score=60.67  Aligned_cols=93  Identities=20%  Similarity=0.224  Sum_probs=60.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-----c
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-----S  383 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-----~  383 (725)
                      +++.|||+|.+|.++|..|.+.|++|+++|.+++.+++....   .+...+-.|.               .++.     .
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~---~~~~~~v~gd---------------~t~~~~L~~a   62 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD---ELDTHVVIGD---------------ATDEDVLEEA   62 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh---hcceEEEEec---------------CCCHHHHHhc
Confidence            479999999999999999999999999999999997764320   0010010110               1111     2


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHHh-CCCCeEEEe
Q 004891          384 EFKDVDMVIEAVIESVPLKQKIFSELEKA-CPPHCILAT  421 (725)
Q Consensus       384 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~-~~~~~ii~s  421 (725)
                      -+.++|.+|-+..+|..-  .++..+... .....+++-
T Consensus        63 gi~~aD~vva~t~~d~~N--~i~~~la~~~~gv~~viar   99 (225)
T COG0569          63 GIDDADAVVAATGNDEVN--SVLALLALKEFGVPRVIAR   99 (225)
T ss_pred             CCCcCCEEEEeeCCCHHH--HHHHHHHHHhcCCCcEEEE
Confidence            368899999998755442  444444332 444455543

>PRK08618 ornithine cyclodeaminase; Validated

Probab=96.66  E-value=0.0051  Score=66.02  Aligned_cols=93  Identities=15%  Similarity=0.158  Sum_probs=62.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH-CCC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~-~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      ++|+|||+|.+|...+..++. .+. +|.+||+++++.++..+.+...+      + +          .+...++. +.+
T Consensus       128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~------~-~----------~~~~~~~~~~~~  190 (325)
T PRK08618        128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF------N-T----------EIYVVNSADEAI  190 (325)
T ss_pred             cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc------C-C----------cEEEeCCHHHHH
Confidence            579999999999999887754 454 89999999998877654432110      1 0          12223444 567


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~  425 (725)
                      +++|+||.|.|...    .++.   ..+++++.|.+..|.
T Consensus       191 ~~aDiVi~aT~s~~----p~i~---~~l~~G~hV~~iGs~  223 (325)
T PRK08618        191 EEADIIVTVTNAKT----PVFS---EKLKKGVHINAVGSF  223 (325)
T ss_pred             hcCCEEEEccCCCC----cchH---HhcCCCcEEEecCCC
Confidence            89999999998442    2333   456788877655443

>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=96.63  E-value=0.04  Score=57.45  Aligned_cols=158  Identities=15%  Similarity=0.116  Sum_probs=88.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH-CCCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccc-
Q 004891          309 RKVAVIGGGLMGSGIATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF-  385 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~-~G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l-  385 (725)
                      -+||+||+|-||+.|+...++ .|++|+ +-|++.+.+.++.++....-...++....+.-...-..+.+..|+|.+.+ 
T Consensus        18 iRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i~   97 (438)
T COG4091          18 IRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELII   97 (438)
T ss_pred             eEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhhh
Confidence            479999999999999987775 699876 55888888777655321111111121111211122223456666666443 


Q ss_pred             --cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC-----CCChHHHhcccCCCCcEEEEecCCCCCCCCeeeE
Q 004891          386 --KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-----TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEI  458 (725)
Q Consensus       386 --~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-----~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lvei  458 (725)
                        ...|+||++.--..---+-.+..|   .....+|..|.-     +..+.+.+...       |+-            .
T Consensus        98 ~~~~IdvIIdATG~p~vGA~~~l~Ai---~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~-------Gvi------------y  155 (438)
T COG4091          98 ANDLIDVIIDATGVPEVGAKIALEAI---LHGKHLVMMNVEADVTIGPILKQQADAA-------GVI------------Y  155 (438)
T ss_pred             cCCcceEEEEcCCCcchhhHhHHHHH---hcCCeEEEEEeeeceeecHHHHHHHhhc-------CeE------------E
Confidence              456888988642222222333333   334445554432     11122222211       221            2


Q ss_pred             ecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004891          459 VRTERTSAQVILDLMTVGKIIKKVPVVVGN  488 (725)
Q Consensus       459 i~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  488 (725)
                      ..+..-.|...-.+.+|.+.+|..++.++.
T Consensus       156 S~~~GDeP~~~mEL~efa~a~G~evv~aGK  185 (438)
T COG4091         156 SGGAGDEPSSCMELYEFASALGFEVVSAGK  185 (438)
T ss_pred             eccCCCCcHHHHHHHHHHHhcCCeEEeccC
Confidence            223344677788888999999999999863

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.62  E-value=0.0048  Score=61.01  Aligned_cols=41  Identities=27%  Similarity=0.303  Sum_probs=36.2

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~  349 (725)
                      ++|.|+|+ |.+|..++..|++.|++|++++|+.++++...+
T Consensus        29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~   70 (194)
T cd01078          29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAAD   70 (194)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence            58999996 999999999999999999999999887766543

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=96.61  E-value=0.0031  Score=67.50  Aligned_cols=101  Identities=18%  Similarity=0.176  Sum_probs=63.6

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCC-------CcEEEEeCChHH--HHHHHHHHHHHHHhhHHcCCCCHHHHH-HhhcCcc
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNN-------IYVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKAN-NALKMLK  377 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G-------~~V~~~d~~~e~--~~~~~~~i~~~l~~~~~~g~~~~~~~~-~~~~~i~  377 (725)
                      -||+|+|+ |.+|+.++..|+..+       .+|+++|+++..  ++..               .++-.+.. .....+.
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~---------------~~Dl~d~~~~~~~~~~   67 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGV---------------VMELQDCAFPLLKSVV   67 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccce---------------eeehhhccccccCCce
Confidence            47999999 999999999998854       589999997531  2110               00000000 0012333


Q ss_pred             cccCc-ccccCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891          378 GVLDY-SEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS  424 (725)
Q Consensus       378 ~~~~~-~~l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~tS  424 (725)
                      ...++ +++++||+||.+.--              +..+.+++..++.++++++++++..|.
T Consensus        68 ~~~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN  129 (325)
T cd01336          68 ATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN  129 (325)
T ss_pred             ecCCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence            34553 889999999988621              223446666778888777777665443

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=96.60  E-value=0.0092  Score=70.51  Aligned_cols=95  Identities=8%  Similarity=0.066  Sum_probs=74.9

Q ss_pred             EEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhcccCC-CCcEEEEecCCCCC------------CCCe
Q 004891          391 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSS-QDRIIGAHFFSPAH------------VMPL  455 (725)
Q Consensus       391 VIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~-~~r~ig~h~~~p~~------------~~~l  455 (725)
                      ||.|+|  +....++++++.++++++++|++.+|+..  +..+...+.. ..+|+|.||.....            .+..
T Consensus         1 vila~P--v~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~   78 (673)
T PRK11861          1 VLLAAP--VAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRN   78 (673)
T ss_pred             CEEEcC--HHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCe
Confidence            689999  89899999999999999999987777643  2344344432 25799999965442            3345


Q ss_pred             eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004891          456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVG  487 (725)
Q Consensus       456 veii~~~~t~~e~~~~~~~l~~~lGk~~v~v~  487 (725)
                      .-+++.+.+++++++.++++++.+|..++.+.
T Consensus        79 ~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~  110 (673)
T PRK11861         79 VVLCALPENAPDALARVEAMWRAARADVRAMS  110 (673)
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence            66888888999999999999999999998884

>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=96.60  E-value=0.024  Score=55.30  Aligned_cols=142  Identities=23%  Similarity=0.278  Sum_probs=87.9

Q ss_pred             EEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004891           18 ITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (725)
Q Consensus        18 i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (725)
                      |.|..|    ++..+...+...+-.++.++..+-|.|  -+.|+...+|                      ...+ +.|.
T Consensus        30 I~l~g~----I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG----------------------~AIy-dtm~   82 (200)
T COG0740          30 IFLGGE----IEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAG----------------------LAIY-DTMQ   82 (200)
T ss_pred             EEEeee----echHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchh----------------------HHHH-HHHH
Confidence            445444    444455555566666655544444444  4444333332                      2445 6688


Q ss_pred             hCCCcEEEEEcccccchhhHHhhhcCEE--EeeCCceEeCcccccCCCCCchhhc-------------hH----hhhhCH
Q 004891           96 DCKKPIVAAVEGLALGGGLELAMGCHAR--IAAPKTQLGLPELTLGVIPGFGGTQ-------------RL----PRLVGL  156 (725)
Q Consensus        96 ~~~kp~Iaav~G~a~GgG~~lalacD~~--ia~~~a~~~~pe~~~Gl~p~~g~~~-------------~l----~r~vG~  156 (725)
                      ..+.||...+-|.|..-|.-|++|+|..  ++.++|++-..... |.+-|.. +.             ++    ...-|.
T Consensus        83 ~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~G~a-~Di~i~A~ei~~~~~~l~~i~a~~TGq  160 (200)
T COG0740          83 FIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQGQA-SDIEIHAREILKIKERLNRIYAEHTGQ  160 (200)
T ss_pred             hcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCccCH-HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            8999999999999999999999999985  88888877654444 3222111 10             00    111121


Q ss_pred             --HHHHHHHHcCCCCCHHHHHHcCCcceecCcch
Q 004891          157 --SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE  188 (725)
Q Consensus       157 --~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~  188 (725)
                        ..-...+-....++|+||++.||||+|....+
T Consensus       161 ~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~  194 (200)
T COG0740         161 TLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESRE  194 (200)
T ss_pred             CHHHHHHhhcccccCCHHHHHHcCCcceeccccc
Confidence              22223344567789999999999999986543

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=96.59  E-value=0.0029  Score=66.37  Aligned_cols=71  Identities=17%  Similarity=0.204  Sum_probs=51.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCC-CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccC-ccccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD-YSEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~l~  386 (725)
                      ++|.|+|+|.+|.+++..|+..| .+|++++|+.++++...+.+..       .+            .+....+ .+.+.
T Consensus       124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~-------~~------------~~~~~~~~~~~~~  184 (278)
T PRK00258        124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGA-------LG------------KAELDLELQEELA  184 (278)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhh-------cc------------ceeecccchhccc
Confidence            57999999999999999999999 6999999999887665433211       00            0111111 14568


Q ss_pred             CCCEEEEeccCC
Q 004891          387 DVDMVIEAVIES  398 (725)
Q Consensus       387 ~aDlVIeavpe~  398 (725)
                      ++|+||.|+|-.
T Consensus       185 ~~DivInaTp~g  196 (278)
T PRK00258        185 DFDLIINATSAG  196 (278)
T ss_pred             cCCEEEECCcCC
Confidence            899999999843

>PLN02494 adenosylhomocysteinase

Probab=96.58  E-value=0.0035  Score=69.13  Aligned_cols=87  Identities=15%  Similarity=0.235  Sum_probs=60.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|+|.|.+|..+|+.+...|.+|+++|+++.+...+.           ..|.             ... ++ +.++.
T Consensus       255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~-----------~~G~-------------~vv-~leEal~~  309 (477)
T PLN02494        255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQAL-----------MEGY-------------QVL-TLEDVVSE  309 (477)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHH-----------hcCC-------------eec-cHHHHHhh
Confidence            6899999999999999999999999999999987643332           1111             001 12 45678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  424 (725)
                      +|+||++.... .   .+..+..+.++++++++....
T Consensus       310 ADVVI~tTGt~-~---vI~~e~L~~MK~GAiLiNvGr  342 (477)
T PLN02494        310 ADIFVTTTGNK-D---IIMVDHMRKMKNNAIVCNIGH  342 (477)
T ss_pred             CCEEEECCCCc-c---chHHHHHhcCCCCCEEEEcCC
Confidence            99999876522 1   223455567899998875443

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.56  E-value=0.0058  Score=58.68  Aligned_cols=76  Identities=22%  Similarity=0.224  Sum_probs=55.2

Q ss_pred             ceEEEEcCCCC-cHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGGLM-GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~m-G~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      ++|.|||+|.| |..+|..|.+.|.+|++.+++.+.+.                                     +.+.+
T Consensus        45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~-------------------------------------~~l~~   87 (168)
T cd01080          45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLK-------------------------------------EHTKQ   87 (168)
T ss_pred             CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHH-------------------------------------HHHhh
Confidence            68999999987 88899999999999999998853321                                     24678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL  428 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~  428 (725)
                      ||+||.|++-.--+..+       .++++.++++.+....+
T Consensus        88 aDiVIsat~~~~ii~~~-------~~~~~~viIDla~prdv  121 (168)
T cd01080          88 ADIVIVAVGKPGLVKGD-------MVKPGAVVIDVGINRVP  121 (168)
T ss_pred             CCEEEEcCCCCceecHH-------HccCCeEEEEccCCCcc
Confidence            99999999743323322       24566777765554433

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK07340 ornithine cyclodeaminase; Validated

Probab=96.55  E-value=0.0066  Score=64.43  Aligned_cols=91  Identities=18%  Similarity=0.174  Sum_probs=61.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH-CCC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~-~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      ++|+|||+|.+|...+..+.. .+. +|.+|++++++.++..+++..       .+.           .+. ..+. +++
T Consensus       126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~-------~~~-----------~~~-~~~~~~av  186 (304)
T PRK07340        126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARA-------LGP-----------TAE-PLDGEAIP  186 (304)
T ss_pred             CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------eeE-ECCHHHHh
Confidence            579999999999999999975 454 799999999987776544321       110           011 2333 578


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~  425 (725)
                      ++||+||.|.|....+    +..   .++|++.|....|.
T Consensus       187 ~~aDiVitaT~s~~Pl----~~~---~~~~g~hi~~iGs~  219 (304)
T PRK07340        187 EAVDLVVTATTSRTPV----YPE---AARAGRLVVAVGAF  219 (304)
T ss_pred             hcCCEEEEccCCCCce----eCc---cCCCCCEEEecCCC
Confidence            8999999999854432    322   25788766554443

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=96.53  E-value=0.018  Score=60.86  Aligned_cols=124  Identities=19%  Similarity=0.189  Sum_probs=74.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC-CCcEE-EEeCCh-HHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cc
Q 004891          309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNS-EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~-e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (725)
                      .||+|||+|.||...+..+.+. +++++ ++|+++ +.+..             ..+            .. .+.+. +.
T Consensus         4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~-------------~~~------------v~-~~~d~~e~   57 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDT-------------ETP------------VY-AVADDEKH   57 (324)
T ss_pred             cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh-------------cCC------------cc-ccCCHHHh
Confidence            5899999999999999998765 78877 579985 32211             001            11 12222 44


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCC
Q 004891          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT  464 (725)
Q Consensus       385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t  464 (725)
                      +.++|+|+.|.|.....  +   .+.+.+..+.=++++.                         +++.           .
T Consensus        58 l~~iDVViIctPs~th~--~---~~~~~L~aG~NVV~s~-------------------------~~h~-----------~   96 (324)
T TIGR01921        58 LDDVDVLILCMGSATDI--P---EQAPYFAQFANTVDSF-------------------------DNHR-----------D   96 (324)
T ss_pred             ccCCCEEEEcCCCccCH--H---HHHHHHHcCCCEEECC-------------------------Cccc-----------C
Confidence            57899999999865552  2   2222222322122210                         0111           1


Q ss_pred             CHHHHHHHHHHHHHcCCeeEEE-cCCcchhh-hhhhH
Q 004891          465 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAV-NRAFF  499 (725)
Q Consensus       465 ~~e~~~~~~~l~~~lGk~~v~v-~d~~Gfi~-nRl~~  499 (725)
                      .++..+.+...++.-|+..++. +=.|||.. ||++.
T Consensus        97 ~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r~~~  133 (324)
T TIGR01921        97 IPRHRQVMDAAAKAAGNVSVISTGWDPGMFSINRVYG  133 (324)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEECCCCcChHHHHHHHH
Confidence            3577788888888776665544 77788655 78754

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=96.52  E-value=0.0072  Score=64.88  Aligned_cols=73  Identities=15%  Similarity=0.173  Sum_probs=52.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH-CCC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~-~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      ++++|||+|.+|...+..++. .+. +|++|+|++++++...+++...+      + +          .+...++. +.+
T Consensus       130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~------g-~----------~v~~~~~~~~av  192 (326)
T TIGR02992       130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL------G-I----------DVTAATDPRAAM  192 (326)
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc------C-c----------eEEEeCCHHHHh
Confidence            579999999999999999973 664 69999999999877654432110      1 0          12223444 567


Q ss_pred             cCCCEEEEeccCC
Q 004891          386 KDVDMVIEAVIES  398 (725)
Q Consensus       386 ~~aDlVIeavpe~  398 (725)
                      ++||+||.|.|..
T Consensus       193 ~~aDiVvtaT~s~  205 (326)
T TIGR02992       193 SGADIIVTTTPSE  205 (326)
T ss_pred             ccCCEEEEecCCC
Confidence            8999999998743

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.47  E-value=0.0041  Score=69.10  Aligned_cols=39  Identities=21%  Similarity=0.215  Sum_probs=34.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCC-CcEEEEeCChHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKG  347 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~  347 (725)
                      ++|+|||+|.||..++..|...| .+|++++++.++++..
T Consensus       181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~l  220 (417)
T TIGR01035       181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDL  220 (417)
T ss_pred             CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence            68999999999999999999999 6899999998876543

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=96.35  E-value=0.0077  Score=54.91  Aligned_cols=104  Identities=19%  Similarity=0.165  Sum_probs=60.0

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHH-CCCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cc
Q 004891          309 RKVAVIGG-GLMGSGIATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~-~G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (725)
                      .||+|+|+ |.||+.++..+.+ .|+++. ++|++++....  +.+.    .....+          ...+..++++ +.
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g--~d~g----~~~~~~----------~~~~~v~~~l~~~   64 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVG--KDVG----ELAGIG----------PLGVPVTDDLEEL   64 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTT--SBCH----HHCTSS----------T-SSBEBS-HHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCccccc--chhh----hhhCcC----------CcccccchhHHHh
Confidence            38999999 9999999999998 788854 67887621100  0000    000000          0123345555 45


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhc
Q 004891          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGE  433 (725)
Q Consensus       385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~  433 (725)
                      +..+|+||+...  ++.....++...++   +.-+++.|+++.-.++..
T Consensus        65 ~~~~DVvIDfT~--p~~~~~~~~~~~~~---g~~~ViGTTG~~~~~~~~  108 (124)
T PF01113_consen   65 LEEADVVIDFTN--PDAVYDNLEYALKH---GVPLVIGTTGFSDEQIDE  108 (124)
T ss_dssp             TTH-SEEEEES---HHHHHHHHHHHHHH---T-EEEEE-SSSHHHHHHH
T ss_pred             cccCCEEEEcCC--hHHhHHHHHHHHhC---CCCEEEECCCCCHHHHHH
Confidence            677999999873  55555555554443   666677788887655443

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=96.30  E-value=0.088  Score=59.78  Aligned_cols=165  Identities=12%  Similarity=0.115  Sum_probs=103.4

Q ss_pred             EEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004891           18 ITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (725)
Q Consensus        18 i~l~~p~--~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (725)
                      |.-|+|.  ..++++.-.+...+.++.+.+. .+-+|.|.-.++ |..|.+-.          .........+++ .++.
T Consensus       319 vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~~-~lPlV~lvDs~G-~~~g~~~E----------~~g~~~~~a~~~-~a~~  385 (512)
T TIGR01117       319 IIANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIPIVTFVDVPG-FLPGVNQE----------YGGIIRHGAKVL-YAYS  385 (512)
T ss_pred             EEEeccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCcC-ccccHHHH----------HHHHHHHHHHHH-HHHH
Confidence            3335664  3679999999999999988753 566777754333 55553321          111122333555 5678


Q ss_pred             hCCCcEEEEEcccccchhhHHhh----hcCEEEeeCCceEeCcccccCCCCCchhhchHh-hhhC----HHHHHHHH---
Q 004891           96 DCKKPIVAAVEGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLP-RLVG----LSKAIEMM---  163 (725)
Q Consensus        96 ~~~kp~Iaav~G~a~GgG~~lal----acD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~-r~vG----~~~a~~l~---  163 (725)
                      ....|.|+.|.|.|+|||+.-+.    .+|+++|.+++.+++       .++-+++..+- +.+-    ...++...   
T Consensus       386 ~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~v-------~~pe~a~~i~~~~~l~~~~~~~~~~~~~~~~  458 (512)
T TIGR01117       386 EATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIAV-------MGPAGAANIIFRKDIKEAKDPAATRKQKIAE  458 (512)
T ss_pred             hCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEee-------cCHHHHHHHHhhhhcccccCHHHHHHHHHHH
Confidence            89999999999999888654443    289999888877664       33223222221 1111    11111111   


Q ss_pred             HcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHh
Q 004891          164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA  202 (725)
Q Consensus       164 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~  202 (725)
                      ..-+..++..+.+.|+||.|+++.++........+.+..
T Consensus       459 ~~~~~~~~~~~a~~g~vD~VI~P~~tR~~l~~~l~~~~~  497 (512)
T TIGR01117       459 YREEFANPYKAAARGYVDDVIEPKQTRPKIVNALAMLES  497 (512)
T ss_pred             HHHhhcCHHHHHhcCCCCeeEChHHHHHHHHHHHHHHhc
Confidence            122345788999999999999999988877777665443

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=96.30  E-value=0.03  Score=61.08  Aligned_cols=76  Identities=18%  Similarity=0.205  Sum_probs=51.3

Q ss_pred             cceEEEEcCCCCcHHHH-HHHHH-----CCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccC
Q 004891          308 VRKVAVIGGGLMGSGIA-TAHIL-----NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA-~~l~~-----~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (725)
                      ..||+|||+|..+.+-- ..+..     .+.++.++|+++++++..    ....++.++.-..+        -++..++|
T Consensus         3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i----~~~~~~~v~~~g~~--------~kv~~ttd   70 (442)
T COG1486           3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKII----AILAKKLVEEAGAP--------VKVEATTD   70 (442)
T ss_pred             cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHH----HHHHHHHHHhhCCC--------eEEEEecC
Confidence            46899999998876532 22222     256899999999997732    33344444432221        24666777


Q ss_pred             c-ccccCCCEEEEec
Q 004891          382 Y-SEFKDVDMVIEAV  395 (725)
Q Consensus       382 ~-~~l~~aDlVIeav  395 (725)
                      . +++++||+||.++
T Consensus        71 ~~eAl~gAdfVi~~~   85 (442)
T COG1486          71 RREALEGADFVITQI   85 (442)
T ss_pred             HHHHhcCCCEEEEEE
Confidence            7 8899999999887

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=96.28  E-value=0.084  Score=59.94  Aligned_cols=127  Identities=22%  Similarity=0.204  Sum_probs=85.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCC--CchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEE
Q 004891           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF--DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIV  102 (725)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~--Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I  102 (725)
                      ..+++....+.+..+++.+..+ .+-+|.|.-     |.|+  ++++-...     ...+.... ..+ ..+.. ..|+|
T Consensus        70 gGs~g~~~~~Ki~ra~~~A~~~-~~P~v~l~d-----sgGa~~r~~eg~~~-----l~~~g~i~-~~~-~~~~~-~iP~I  135 (493)
T PF01039_consen   70 GGSVGEVHGEKIARAIELALEN-GLPLVYLVD-----SGGAFLRMQEGVES-----LMGMGRIF-RAI-ARLSG-GIPQI  135 (493)
T ss_dssp             GGTBSHHHHHHHHHHHHHHHHH-TEEEEEEEE-----ESSBCGGGGGHHHH-----HHHHHHHH-HHH-HHHHT-TS-EE
T ss_pred             cCCCCcccceeeehHHHHHHHc-CCCcEEecc-----ccccccccchhhhh-----hhhhHHHH-HHH-HHHhc-CCCeE
Confidence            4789999999999999988866 455666643     3344  44332211     00111111 222 33555 99999


Q ss_pred             EEEcccccchhhHHhhhcCEEEeeCC-ceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHH-------
Q 004891          103 AAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------  174 (725)
Q Consensus       103 aav~G~a~GgG~~lalacD~~ia~~~-a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA-------  174 (725)
                      +++.|+|.|||..++..||++|+.++ +.+++.                    |+... + ..+|+.++.++.       
T Consensus       136 ~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~--------------------GP~vv-~-~~~Ge~~~~~~lgG~~~h~  193 (493)
T PF01039_consen  136 SVVTGPCTGGGAYLAALSDFVIMVKGTARIFLA--------------------GPRVV-E-SATGEEVDSEELGGADVHA  193 (493)
T ss_dssp             EEEESEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------THHHH-H-HHHSSCTSHHHHHBHHHHH
T ss_pred             EEEccccccchhhcccccCccccCccceEEEec--------------------ccccc-c-cccCccccchhhhhhhhhc
Confidence            99999999999999999999999987 777643                    21211 1 245788888764       


Q ss_pred             HHcCCcceecCcc
Q 004891          175 WKLGLIDAVVTSE  187 (725)
Q Consensus       175 ~~~Glv~~vv~~~  187 (725)
                      ...|.+|.+++.+
T Consensus       194 ~~sG~~d~v~~de  206 (493)
T PF01039_consen  194 AKSGVVDYVVDDE  206 (493)
T ss_dssp             HTSSSSSEEESSH
T ss_pred             ccCCCceEEEech
Confidence            4789999999765

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=96.27  E-value=0.028  Score=50.50  Aligned_cols=77  Identities=23%  Similarity=0.209  Sum_probs=52.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHC--CCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          310 KVAVIGGGLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~--G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      ||+|||+|.+|......+.+.  +.+|+ ++|+++++.+...+.                       -.+...+++ +.+
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~-----------------------~~~~~~~~~~~ll   58 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK-----------------------YGIPVYTDLEELL   58 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH-----------------------TTSEEESSHHHHH
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH-----------------------hcccchhHHHHHH
Confidence            799999999999999888877  45654 889999887765321                       112245555 334


Q ss_pred             c--CCCEEEEeccCChHHHHHHHHHHHH
Q 004891          386 K--DVDMVIEAVIESVPLKQKIFSELEK  411 (725)
Q Consensus       386 ~--~aDlVIeavpe~~~~k~~v~~~l~~  411 (725)
                      +  +.|+|+.|+|...  -.++..+..+
T Consensus        59 ~~~~~D~V~I~tp~~~--h~~~~~~~l~   84 (120)
T PF01408_consen   59 ADEDVDAVIIATPPSS--HAEIAKKALE   84 (120)
T ss_dssp             HHTTESEEEEESSGGG--HHHHHHHHHH
T ss_pred             HhhcCCEEEEecCCcc--hHHHHHHHHH
Confidence            3  7899999998544  3355544433

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK08291 ectoine utilization protein EutC; Validated

Probab=96.26  E-value=0.012  Score=63.38  Aligned_cols=72  Identities=17%  Similarity=0.139  Sum_probs=51.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH-CC-CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          309 RKVAVIGGGLMGSGIATAHIL-NN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~-~G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      ++|+|||+|.+|...+..+.. .+ .+|++|+|+++++++..+.+++.+      + +          .+...++. +.+
T Consensus       133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~------g-~----------~v~~~~d~~~al  195 (330)
T PRK08291        133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL------G-I----------PVTVARDVHEAV  195 (330)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc------C-c----------eEEEeCCHHHHH
Confidence            579999999999999888875 45 489999999999887654432110      1 0          12223444 567


Q ss_pred             cCCCEEEEeccC
Q 004891          386 KDVDMVIEAVIE  397 (725)
Q Consensus       386 ~~aDlVIeavpe  397 (725)
                      .+||+||.|.|.
T Consensus       196 ~~aDiVi~aT~s  207 (330)
T PRK08291        196 AGADIIVTTTPS  207 (330)
T ss_pred             ccCCEEEEeeCC
Confidence            889999998874

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=96.25  E-value=0.0055  Score=55.59  Aligned_cols=99  Identities=17%  Similarity=0.159  Sum_probs=60.4

Q ss_pred             eEEEEc-CCCCcHHHHHHHHHCC-Cc-EEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccccc-Ccccc
Q 004891          310 KVAVIG-GGLMGSGIATAHILNN-IY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DYSEF  385 (725)
Q Consensus       310 kIaVIG-~G~mG~~iA~~l~~~G-~~-V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~l  385 (725)
                      ||+||| .|.+|..+...|.++- ++ +.++.++.+.-.....        ....        ......+.+.+ +.+.+
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~--------~~~~--------~~~~~~~~~~~~~~~~~   64 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSE--------VFPH--------PKGFEDLSVEDADPEEL   64 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHH--------TTGG--------GTTTEEEBEEETSGHHH
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeeh--------hccc--------cccccceeEeecchhHh
Confidence            799999 7999999999999853 34 4456666522111110        0000        00001222222 34567


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  429 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~  429 (725)
                      .++|+||.|+|  .....++...+   +..++.|+++++.+...
T Consensus        65 ~~~Dvvf~a~~--~~~~~~~~~~~---~~~g~~ViD~s~~~R~~  103 (121)
T PF01118_consen   65 SDVDVVFLALP--HGASKELAPKL---LKAGIKVIDLSGDFRLD  103 (121)
T ss_dssp             TTESEEEE-SC--HHHHHHHHHHH---HHTTSEEEESSSTTTTS
T ss_pred             hcCCEEEecCc--hhHHHHHHHHH---hhCCcEEEeCCHHHhCC
Confidence            99999999998  55556666665   45788888988876543

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=96.24  E-value=0.011  Score=65.80  Aligned_cols=39  Identities=26%  Similarity=0.267  Sum_probs=35.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKG  347 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~  347 (725)
                      ++|+|||+|.||..++..+...|. +|+++++++++++..
T Consensus       183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~l  222 (423)
T PRK00045        183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEEL  222 (423)
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHH
Confidence            689999999999999999999998 799999999876543

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=96.23  E-value=0.0082  Score=57.13  Aligned_cols=70  Identities=23%  Similarity=0.208  Sum_probs=49.6

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      +||+|||+ |..|+.|+....+.||+|+.+-||++++... +.+     ..+++...+            .+...+++.+
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~-~~~-----~i~q~Difd------------~~~~a~~l~g   62 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR-QGV-----TILQKDIFD------------LTSLASDLAG   62 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc-ccc-----eeecccccC------------hhhhHhhhcC
Confidence            58999998 9999999999999999999999999886541 000     001111111            1111256889


Q ss_pred             CCEEEEecc
Q 004891          388 VDMVIEAVI  396 (725)
Q Consensus       388 aDlVIeavp  396 (725)
                      .|.||.+..
T Consensus        63 ~DaVIsA~~   71 (211)
T COG2910          63 HDAVISAFG   71 (211)
T ss_pred             CceEEEecc
Confidence            999999984

>TIGR00518 alaDH alanine dehydrogenase

Probab=96.21  E-value=0.0086  Score=65.34  Aligned_cols=39  Identities=26%  Similarity=0.358  Sum_probs=35.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~  347 (725)
                      .+|.|||+|.+|...+..+...|.+|+++|+++++++.+
T Consensus       168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l  206 (370)
T TIGR00518       168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQL  206 (370)
T ss_pred             ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH
Confidence            679999999999999999999999999999998876654

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=96.21  E-value=0.0088  Score=67.53  Aligned_cols=70  Identities=17%  Similarity=0.207  Sum_probs=51.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  388 (725)
                      +++.|+|+|.||.+++..|++.|++|+++|+++++++...+.+        .....+             ..+...+.++
T Consensus       333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~--------~~~~~~-------------~~~~~~l~~~  391 (477)
T PRK09310        333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRC--------QGKAFP-------------LESLPELHRI  391 (477)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------ccceec-------------hhHhcccCCC
Confidence            5799999999999999999999999999999988766543211        001011             1122336789


Q ss_pred             CEEEEeccCCh
Q 004891          389 DMVIEAVIESV  399 (725)
Q Consensus       389 DlVIeavpe~~  399 (725)
                      |+||.|+|...
T Consensus       392 DiVInatP~g~  402 (477)
T PRK09310        392 DIIINCLPPSV  402 (477)
T ss_pred             CEEEEcCCCCC
Confidence            99999998654

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.16  E-value=0.01  Score=62.36  Aligned_cols=41  Identities=17%  Similarity=0.122  Sum_probs=36.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK  349 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~  349 (725)
                      ++|.|||+|-+|++++..|+..|. +|++++|+.++.+...+
T Consensus       126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~  167 (282)
T TIGR01809       126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVD  167 (282)
T ss_pred             ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            579999999999999999999997 69999999988766543

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.15  E-value=0.059  Score=53.56  Aligned_cols=129  Identities=20%  Similarity=0.274  Sum_probs=74.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChH-HHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e-~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      ++|.|||+|.+|...+..|.++|.+|++++++.. .+..           +...+.+.         ...-.-..+.+.+
T Consensus        11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~-----------l~~~~~i~---------~~~~~~~~~~l~~   70 (202)
T PRK06718         11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVK-----------LVEEGKIR---------WKQKEFEPSDIVD   70 (202)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHH-----------HHhCCCEE---------EEecCCChhhcCC
Confidence            6899999999999999999999999999987532 1111           11222111         0000111256789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCC--CCCCeeeEecCCCCC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTERTS  465 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~--~~~~lveii~~~~t~  465 (725)
                      +|+||.|.. +.++...+...-    ..+. ++.+....+            .   ..|..|.  ..+++.-.+.+.+.+
T Consensus        71 adlViaaT~-d~elN~~i~~~a----~~~~-lvn~~d~~~------------~---~~f~~Pa~~~~g~l~iaIsT~G~s  129 (202)
T PRK06718         71 AFLVIAATN-DPRVNEQVKEDL----PENA-LFNVITDAE------------S---GNVVFPSALHRGKLTISVSTDGAS  129 (202)
T ss_pred             ceEEEEcCC-CHHHHHHHHHHH----HhCC-cEEECCCCc------------c---CeEEEeeEEEcCCeEEEEECCCCC
Confidence            999988764 555555554332    2333 332222111            1   1232332  334455556666678


Q ss_pred             HHHHHHHHHHHHH
Q 004891          466 AQVILDLMTVGKI  478 (725)
Q Consensus       466 ~e~~~~~~~l~~~  478 (725)
                      |.....++.-++.
T Consensus       130 P~la~~lr~~ie~  142 (202)
T PRK06718        130 PKLAKKIRDELEA  142 (202)
T ss_pred             hHHHHHHHHHHHH
Confidence            8877777776665

>PRK05086 malate dehydrogenase; Provisional

Probab=96.12  E-value=0.013  Score=62.46  Aligned_cols=96  Identities=17%  Similarity=0.199  Sum_probs=58.6

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHH---CCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccc--ccC-
Q 004891          309 RKVAVIGG-GLMGSGIATAHIL---NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG--VLD-  381 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~---~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~--~~~-  381 (725)
                      +||+|||+ |.+|.++|..+..   .+++++++|+++.....+.+ +        ...        .....+..  .++ 
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alD-l--------~~~--------~~~~~i~~~~~~d~   63 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVD-L--------SHI--------PTAVKIKGFSGEDP   63 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehh-h--------hcC--------CCCceEEEeCCCCH
Confidence            58999999 9999999998855   24689999998542100010 0        000        00011221  234 


Q ss_pred             cccccCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEec
Q 004891          382 YSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATN  422 (725)
Q Consensus       382 ~~~l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~  422 (725)
                      ++++++||+||.|.-.              +..+.+++...+.++ .++++++..
T Consensus        64 ~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivv  117 (312)
T PRK05086         64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGII  117 (312)
T ss_pred             HHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEc
Confidence            4788999999999842              222555566667776 456665543

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=96.09  E-value=0.016  Score=61.41  Aligned_cols=93  Identities=15%  Similarity=0.154  Sum_probs=62.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC-CC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILN-NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~-G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      ++++|||+|.+|...+..++.- .+ +|.+|+|++++.++..+++++.+      +           -.+...++. +++
T Consensus       118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~------~-----------~~v~~~~~~~eav  180 (301)
T PRK06407        118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF------G-----------VDIRPVDNAEAAL  180 (301)
T ss_pred             cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHHHH
Confidence            6799999999999998888763 33 79999999999887655443210      1           123334444 678


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  424 (725)
                      ++||+|+.|.+....    ++.  .+.++|++-|....|
T Consensus       181 ~~aDIV~taT~s~~P----~~~--~~~l~pg~hV~aiGs  213 (301)
T PRK06407        181 RDADTITSITNSDTP----IFN--RKYLGDEYHVNLAGS  213 (301)
T ss_pred             hcCCEEEEecCCCCc----Eec--HHHcCCCceEEecCC
Confidence            999999998874332    221  124567776654444

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=96.06  E-value=0.041  Score=66.96  Aligned_cols=123  Identities=14%  Similarity=0.121  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHHHhCCHh-----HHHHHHHHHhhhhhcCCCCCCCCCCCCCCcceEEEEcCCCCcHHHHHHHHHC-CC
Q 004891          259 GYSGVLKEAKVFKELVMLDT-----SRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILN-NI  332 (725)
Q Consensus       259 ~~~~l~~E~~~~~~~~~s~~-----~~~~i~aF~~~r~~~~~~~~~~~~~~~~~~~kIaVIG~G~mG~~iA~~l~~~-G~  332 (725)
                      -++.|......+..+....+     ..+..+.|....+.+....-.........++||+|||+|.||...|..|++. ++
T Consensus       515 d~~~L~~i~~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIlVLGAG~VG~~~a~~La~~~~~  594 (1042)
T PLN02819        515 DKEVLDQIIDSLTRLANPNEDYISPAREANKIFLKIGKVQQENECNEKAEVTKKSQNVLILGAGRVCRPAAEYLASVKTI  594 (1042)
T ss_pred             cHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhcccccccccccccccccCCcEEEECCCHHHHHHHHHHHhCcCc
Confidence            34555555555665554222     2345555554333332111111122334578999999999999999999875 33


Q ss_pred             c-------------EEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccc-ccCc----ccccCCCEEEEe
Q 004891          333 Y-------------VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDY----SEFKDVDMVIEA  394 (725)
Q Consensus       333 ~-------------V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~----~~l~~aDlVIea  394 (725)
                      +             |++.|++++.++++.+.+         .+ +         ..+.. .+|.    +.++++|+||.|
T Consensus       595 ~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~---------~~-~---------~~v~lDv~D~e~L~~~v~~~DaVIsa  655 (1042)
T PLN02819        595 SYYGDDSEEPTDVHVIVASLYLKDAKETVEGI---------EN-A---------EAVQLDVSDSESLLKYVSQVDVVISL  655 (1042)
T ss_pred             cccccccccccccEEEEECCCHHHHHHHHHhc---------CC-C---------ceEEeecCCHHHHHHhhcCCCEEEEC
Confidence            4             999999998876643311         01 0         00111 1222    334779999999


Q ss_pred             ccCChH
Q 004891          395 VIESVP  400 (725)
Q Consensus       395 vpe~~~  400 (725)
                      +|....
T Consensus       656 lP~~~H  661 (1042)
T PLN02819        656 LPASCH  661 (1042)
T ss_pred             CCchhh
Confidence            996443

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=96.06  E-value=0.01  Score=57.72  Aligned_cols=96  Identities=17%  Similarity=0.212  Sum_probs=57.8

Q ss_pred             EEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCCC
Q 004891          311 VAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD  389 (725)
Q Consensus       311 IaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD  389 (725)
                      |.|+|+ |.+|..++..|.+.|++|+++-|++++++. ...+     +.+.....+.+..            .+++++||
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-~~~~-----~~~~~d~~d~~~~------------~~al~~~d   62 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-SPGV-----EIIQGDLFDPDSV------------KAALKGAD   62 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-CTTE-----EEEESCTTCHHHH------------HHHHTTSS
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-cccc-----ccceeeehhhhhh------------hhhhhhcc
Confidence            689997 999999999999999999999999987554 0000     0000000111000            14578999


Q ss_pred             EEEEeccC---ChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891          390 MVIEAVIE---SVPLKQKIFSELEKACPPHCILATNTS  424 (725)
Q Consensus       390 lVIeavpe---~~~~k~~v~~~l~~~~~~~~ii~s~tS  424 (725)
                      .||.+++.   +....+.+++.+.+.-.+..+++|..+
T Consensus        63 ~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~~~  100 (183)
T PF13460_consen   63 AVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSSAG  100 (183)
T ss_dssp             EEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred             hhhhhhhhhcccccccccccccccccccccceeeeccc
Confidence            99999973   344444455544443222334444443

...

>PRK06046 alanine dehydrogenase; Validated

Probab=96.04  E-value=0.017  Score=62.04  Aligned_cols=92  Identities=12%  Similarity=0.083  Sum_probs=59.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC-CC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILN-NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~-G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      ++|+|||+|.+|...+..+... +. .|.+||+++++.++..+.+.+.      .+           -.+...++. +.+
T Consensus       130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~------~~-----------~~v~~~~~~~~~l  192 (326)
T PRK06046        130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSV------VG-----------CDVTVAEDIEEAC  192 (326)
T ss_pred             CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhh------cC-----------ceEEEeCCHHHHh
Confidence            5799999999999999988743 44 7889999999887765543211      01           012233444 345


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  424 (725)
                      + +|+|+.|.|....    +|.  .+.+++++.|.+..|
T Consensus       193 ~-aDiVv~aTps~~P----~~~--~~~l~~g~hV~~iGs  224 (326)
T PRK06046        193 D-CDILVTTTPSRKP----VVK--AEWIKEGTHINAIGA  224 (326)
T ss_pred             h-CCEEEEecCCCCc----Eec--HHHcCCCCEEEecCC
Confidence            5 9999999985332    221  124567776654444

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.02  E-value=0.031  Score=55.65  Aligned_cols=132  Identities=17%  Similarity=0.202  Sum_probs=76.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  388 (725)
                      ++|.|||+|.+|..-+..|++.|.+|++++.+...  .        +..+.+.+.+.         .+.-.-..+.+.++
T Consensus        10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~--~--------l~~l~~~~~i~---------~~~~~~~~~dl~~~   70 (205)
T TIGR01470        10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELES--E--------LTLLAEQGGIT---------WLARCFDADILEGA   70 (205)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCH--H--------HHHHHHcCCEE---------EEeCCCCHHHhCCc
Confidence            58999999999999999999999999999886541  1        11112222221         01001112457889


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCC--CCCCCeeeEecCCCCCH
Q 004891          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSP--AHVMPLLEIVRTERTSA  466 (725)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p--~~~~~lveii~~~~t~~  466 (725)
                      |+||.|. ++.++...++....    ...+++...+....               ..|..|  ...+++.-.+...+.+|
T Consensus        71 ~lVi~at-~d~~ln~~i~~~a~----~~~ilvn~~d~~e~---------------~~f~~pa~~~~g~l~iaisT~G~sP  130 (205)
T TIGR01470        71 FLVIAAT-DDEELNRRVAHAAR----ARGVPVNVVDDPEL---------------CSFIFPSIVDRSPVVVAISSGGAAP  130 (205)
T ss_pred             EEEEECC-CCHHHHHHHHHHHH----HcCCEEEECCCccc---------------CeEEEeeEEEcCCEEEEEECCCCCc
Confidence            9998774 45666555555433    22333322222111               122233  23345555566666788


Q ss_pred             HHHHHHHHHHHHc
Q 004891          467 QVILDLMTVGKII  479 (725)
Q Consensus       467 e~~~~~~~l~~~l  479 (725)
                      .....++.-++.+
T Consensus       131 ~la~~lr~~ie~~  143 (205)
T TIGR01470       131 VLARLLRERIETL  143 (205)
T ss_pred             HHHHHHHHHHHHh
Confidence            7777777666654

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PLN00203 glutamyl-tRNA reductase

Probab=96.01  E-value=0.0073  Score=68.40  Aligned_cols=40  Identities=23%  Similarity=0.248  Sum_probs=36.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~  348 (725)
                      ++|+|||+|.||..++..|...|. +|++++++.++++...
T Consensus       267 kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La  307 (519)
T PLN00203        267 ARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALR  307 (519)
T ss_pred             CEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHH
Confidence            689999999999999999999997 7999999998876643

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=95.93  E-value=0.028  Score=58.14  Aligned_cols=98  Identities=19%  Similarity=0.236  Sum_probs=54.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccc-cCc---
Q 004891          309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY---  382 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~--G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~---  382 (725)
                      +||++||.|.+-.+.-....+.  |..|+.+|+++++.+.+.+-+...+.  +.             .++++. .|.   
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~--L~-------------~~m~f~~~d~~~~  186 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG--LS-------------KRMSFITADVLDV  186 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H--H--------------SSEEEEES-GGGG
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc--cc-------------CCeEEEecchhcc
Confidence            5999999999987755544443  45789999999998887643331110  01             122222 121   


Q ss_pred             -ccccCCCEEEEecc--CChHHHHHHHHHHHHhCCCCeEEEe
Q 004891          383 -SEFKDVDMVIEAVI--ESVPLKQKIFSELEKACPPHCILAT  421 (725)
Q Consensus       383 -~~l~~aDlVIeavp--e~~~~k~~v~~~l~~~~~~~~ii~s  421 (725)
                       ..++++|+|+.|.-  -+..-|.+++..|.+++++|++|+.
T Consensus       187 ~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~  228 (276)
T PF03059_consen  187 TYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVV  228 (276)
T ss_dssp             -GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred             ccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEE
Confidence             34688999999863  2344899999999999999998874

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.87  E-value=0.042  Score=49.15  Aligned_cols=95  Identities=21%  Similarity=0.142  Sum_probs=57.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCCCE
Q 004891          311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM  390 (725)
Q Consensus       311 IaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDl  390 (725)
                      |.|+|.|.+|..++..|.+.+.+|+++|.+++..+.+.+..     ..+-.|..+..+.-          ....+.+|+.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~-----~~~i~gd~~~~~~l----------~~a~i~~a~~   65 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG-----VEVIYGDATDPEVL----------ERAGIEKADA   65 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT-----SEEEES-TTSHHHH----------HHTTGGCESE
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc-----cccccccchhhhHH----------hhcCccccCE
Confidence            57999999999999999998779999999999977764311     00001111100000          0034688999


Q ss_pred             EEEeccCChHHHHHHHHHHHHhCCCCeEEEe
Q 004891          391 VIEAVIESVPLKQKIFSELEKACPPHCILAT  421 (725)
Q Consensus       391 VIeavpe~~~~k~~v~~~l~~~~~~~~ii~s  421 (725)
                      ||.+.+++ .....+...+.+..+.-.+++-
T Consensus        66 vv~~~~~d-~~n~~~~~~~r~~~~~~~ii~~   95 (116)
T PF02254_consen   66 VVILTDDD-EENLLIALLARELNPDIRIIAR   95 (116)
T ss_dssp             EEEESSSH-HHHHHHHHHHHHHTTTSEEEEE
T ss_pred             EEEccCCH-HHHHHHHHHHHHHCCCCeEEEE
Confidence            99988755 3333333445444444555543

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=95.86  E-value=0.025  Score=60.12  Aligned_cols=92  Identities=13%  Similarity=0.123  Sum_probs=62.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHC-C-CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILN-N-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~-G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (725)
                      ...++|||+|.++......+..- + -+|.+|+++++..++...++.+.       +.          ..+...++. ++
T Consensus       130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~-------~~----------~~v~a~~s~~~a  192 (330)
T COG2423         130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKR-------GG----------EAVGAADSAEEA  192 (330)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhh-------cC----------ccceeccCHHHH
Confidence            46799999999999999888763 3 38999999999988876543321       11          013334444 77


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEec
Q 004891          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN  422 (725)
Q Consensus       385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~  422 (725)
                      +++||+|+.|.|.+..+    +.  .+.++|++-|...
T Consensus       193 v~~aDiIvt~T~s~~Pi----l~--~~~l~~G~hI~ai  224 (330)
T COG2423         193 VEGADIVVTATPSTEPV----LK--AEWLKPGTHINAI  224 (330)
T ss_pred             hhcCCEEEEecCCCCCe----ec--HhhcCCCcEEEec
Confidence            89999999999744422    11  1345577765443

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=95.82  E-value=0.015  Score=57.88  Aligned_cols=32  Identities=25%  Similarity=0.323  Sum_probs=30.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN  340 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~  340 (725)
                      .||.|||+|.+|+.+|..|++.|. +++++|.+
T Consensus        22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            579999999999999999999998 89999987

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional

Probab=95.81  E-value=0.23  Score=50.29  Aligned_cols=106  Identities=14%  Similarity=0.100  Sum_probs=73.0

Q ss_pred             ccCcccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccC----CCCcEEEEecCCCCCCCC
Q 004891          379 VLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS----SQDRIIGAHFFSPAHVMP  454 (725)
Q Consensus       379 ~~~~~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~----~~~r~ig~h~~~p~~~~~  454 (725)
                      ++|.++++++|++|.-.|..-. .-.+.+++.++++.++|| +||.+++...+...+.    ..-.+..+||-.-| .++
T Consensus       133 sDD~EAvk~aei~I~ftPfG~~-t~~Iikki~~~ipEgAII-~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaaVP-gt~  209 (342)
T PRK00961        133 TDDREAVADADIVITWLPKGGM-QPDIIEKFADDIKEGAIV-THACTIPTTKFAKIFKDLGRDDLNVTSYHPGAVP-EMK  209 (342)
T ss_pred             cCcHHHhcCCCEEEEecCCCCC-chHHHHHHHhhCCCCCEE-eccccCCHHHHHHHHHHhCcccCCeeccCCCCCC-CCC
Confidence            4455999999999999985432 236778888999999987 5777887765554432    22345566663322 222


Q ss_pred             eeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004891          455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG  487 (725)
Q Consensus       455 lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~  487 (725)
                      .-..+.-...++|.++++.++.+..|+.++++.
T Consensus       210 Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~P  242 (342)
T PRK00961        210 GQVYIAEGYADEEAVEKLYEIGKKARGNAFKMP  242 (342)
T ss_pred             CceecccccCCHHHHHHHHHHHHHhCCCeeecc
Confidence            111223344689999999999999999999873

>PRK06823 ornithine cyclodeaminase; Validated

Probab=95.80  E-value=0.034  Score=59.27  Aligned_cols=93  Identities=10%  Similarity=0.077  Sum_probs=62.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~--G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      ++++|||+|.++...+..+...  --+|.+|++++++.++..+.+++       .+           -.+...++. +++
T Consensus       129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~-------~~-----------~~v~~~~~~~~av  190 (315)
T PRK06823        129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQA-------LG-----------FAVNTTLDAAEVA  190 (315)
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------cC-----------CcEEEECCHHHHh
Confidence            6799999999999999887753  23899999999998876543221       11           123334444 678


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~  425 (725)
                      ++||+|+.|.+....    +|.  .+.++|++.|....|.
T Consensus       191 ~~ADIV~taT~s~~P----~~~--~~~l~~G~hi~~iGs~  224 (315)
T PRK06823        191 HAANLIVTTTPSREP----LLQ--AEDIQPGTHITAVGAD  224 (315)
T ss_pred             cCCCEEEEecCCCCc----eeC--HHHcCCCcEEEecCCC
Confidence            999999998864332    221  1346788776654443

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=95.69  E-value=0.027  Score=58.33  Aligned_cols=35  Identities=29%  Similarity=0.293  Sum_probs=28.9

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHC-CCcEE-EEeCChHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILN-NIYVV-LKEVNSEY  343 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~-G~~V~-~~d~~~e~  343 (725)
                      .||+|+|+ |.||..++..+.+. +++++ ++|++++.
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~   39 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSP   39 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcc
Confidence            58999998 99999999988864 67766 58888765

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=95.67  E-value=0.024  Score=59.11  Aligned_cols=42  Identities=14%  Similarity=0.129  Sum_probs=37.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKT  350 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~  350 (725)
                      ++|.|+|+|-++.+++..|++.|. +|++++|+.+++++..+.
T Consensus       127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~  169 (283)
T COG0169         127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADL  169 (283)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Confidence            679999999999999999999995 799999999998776543

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.65  E-value=0.032  Score=58.02  Aligned_cols=72  Identities=18%  Similarity=0.263  Sum_probs=54.3

Q ss_pred             ceEEEEcCCC-CcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~-mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      ++|.|||.|. +|.++|..|.+.|..|+++++....+.                                     +.+++
T Consensus       159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~-------------------------------------~~~~~  201 (286)
T PRK14175        159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMA-------------------------------------SYLKD  201 (286)
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHHhh
Confidence            6899999987 999999999999999999987532211                                     24678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  424 (725)
                      ||+||.|++-.--+..       +.+++++++++..+
T Consensus       202 ADIVIsAvg~p~~i~~-------~~vk~gavVIDvGi  231 (286)
T PRK14175        202 ADVIVSAVGKPGLVTK-------DVVKEGAVIIDVGN  231 (286)
T ss_pred             CCEEEECCCCCcccCH-------HHcCCCcEEEEcCC
Confidence            9999999974322222       24688888887554

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.63  E-value=0.051  Score=60.56  Aligned_cols=37  Identities=30%  Similarity=0.452  Sum_probs=33.6

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHH
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL  344 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~  344 (725)
                      .++|.|||.|.+|.++|..|.+.|++|+++|++++.+
T Consensus         3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~   39 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEAL   39 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence            4689999999999999999999999999999887653

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=95.62  E-value=0.03  Score=60.98  Aligned_cols=41  Identities=27%  Similarity=0.281  Sum_probs=36.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK  349 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~  349 (725)
                      +||.|||+|-||...|.+|.++|. +|++.+|+.+++....+
T Consensus       179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~  220 (414)
T COG0373         179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAK  220 (414)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH
Confidence            579999999999999999999994 89999999999877543

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=95.62  E-value=0.014  Score=64.42  Aligned_cols=68  Identities=19%  Similarity=0.180  Sum_probs=49.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      +||.|||+|-||..++..|+..|. ++++++|+.++++...+.+.        .+            .....+++ +.+.
T Consensus       182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~--------~~------------~~~~~~~l~~~l~  241 (414)
T PRK13940        182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFR--------NA------------SAHYLSELPQLIK  241 (414)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhc--------CC------------eEecHHHHHHHhc
Confidence            579999999999999999999996 79999999887655432110        01            01111222 5578


Q ss_pred             CCCEEEEecc
Q 004891          387 DVDMVIEAVI  396 (725)
Q Consensus       387 ~aDlVIeavp  396 (725)
                      ++|+||.|++
T Consensus       242 ~aDiVI~aT~  251 (414)
T PRK13940        242 KADIIIAAVN  251 (414)
T ss_pred             cCCEEEECcC
Confidence            8999999885

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=95.60  E-value=0.32  Score=55.30  Aligned_cols=140  Identities=16%  Similarity=0.114  Sum_probs=84.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEE
Q 004891           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (725)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (725)
                      .-+++....+.+..+++.+.++. +-+|.|.-.|+     +.+.+-..    . ...+...+ ..  .....-..|.|++
T Consensus        95 gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSgG-----arm~eg~~----~-l~~~~~~~-~~--~~~~s~~iP~Isv  160 (512)
T TIGR01117        95 GGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSGG-----ARIQEAVD----A-LKGYGDIF-YR--NTIASGVVPQISA  160 (512)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCCC-----CCccccch----h-hhhHHHHH-HH--HHHHcCCCcEEEE
Confidence            47888889999999999887653 55666653332     23321100    0 00111111 11  1123345899999


Q ss_pred             EcccccchhhHHhhhcCEEEeeCCc-eEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHH-------HH
Q 004891          105 VEGLALGGGLELAMGCHARIAAPKT-QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------WK  176 (725)
Q Consensus       105 v~G~a~GgG~~lalacD~~ia~~~a-~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA-------~~  176 (725)
                      +.|.|.||+......||++|+++++ .+++.                    |+...+ . .+|+.+++++.       ..
T Consensus       161 v~G~~~GG~a~~~al~D~vim~~~~a~i~~a--------------------GP~vv~-~-~~Ge~v~~e~lGGa~~h~~~  218 (512)
T TIGR01117       161 IMGPCAGGAVYSPALTDFIYMVDNTSQMFIT--------------------GPQVIK-T-VTGEEVTAEQLGGAMAHNSV  218 (512)
T ss_pred             EecCCCcHHHHHHHhcCceEEeccceEEEec--------------------ChHHHH-h-hcCcccchhhcchHHHhccc
Confidence            9999999998888899999999864 45431                    212111 1 35666666655       25


Q ss_pred             cCCcceecCcc-hHHHHHHHHHHHH
Q 004891          177 LGLIDAVVTSE-ELLKVSRLWALDI  200 (725)
Q Consensus       177 ~Glv~~vv~~~-~l~~~a~~~a~~l  200 (725)
                      .|++|.+++.+ +..+.+.++..-+
T Consensus       219 sGv~d~~~~de~ea~~~~r~~ls~l  243 (512)
T TIGR01117       219 SGVAHFIAEDDDDCIMLIRRLLSFL  243 (512)
T ss_pred             cceeEEecCChHHHHHHHHHHHHhC
Confidence            89999998544 4555555554443

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=95.57  E-value=0.013  Score=62.43  Aligned_cols=93  Identities=18%  Similarity=0.171  Sum_probs=53.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH-CCC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~-~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      ++++|||+|..+..-+..++. .+. +|.+|+|+++++++..+++++       .+           -.+...++. +++
T Consensus       129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-------~~-----------~~v~~~~~~~~av  190 (313)
T PF02423_consen  129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-------LG-----------VPVVAVDSAEEAV  190 (313)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-------CC-----------TCEEEESSHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-------cc-----------ccceeccchhhhc
Confidence            579999999999998887765 344 899999999998876554322       01           123445555 678


Q ss_pred             cCCCEEEEeccCCh--HHHHHHHHHHHHhCCCCeEEEecCCC
Q 004891          386 KDVDMVIEAVIESV--PLKQKIFSELEKACPPHCILATNTST  425 (725)
Q Consensus       386 ~~aDlVIeavpe~~--~~k~~v~~~l~~~~~~~~ii~s~tS~  425 (725)
                      ++||+|+.|.+-..  .+    +.  .+.+++++.|....+.
T Consensus       191 ~~aDii~taT~s~~~~P~----~~--~~~l~~g~hi~~iGs~  226 (313)
T PF02423_consen  191 RGADIIVTATPSTTPAPV----FD--AEWLKPGTHINAIGSY  226 (313)
T ss_dssp             TTSSEEEE----SSEEES----B---GGGS-TT-EEEE-S-S
T ss_pred             ccCCEEEEccCCCCCCcc----cc--HHHcCCCcEEEEecCC
Confidence            99999999987443  21    11  1356788877655543

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=95.55  E-value=0.041  Score=46.54  Aligned_cols=31  Identities=35%  Similarity=0.460  Sum_probs=28.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC-CCcEEEEeC
Q 004891          309 RKVAVIGGGLMGSGIATAHILN-NIYVVLKEV  339 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~-G~~V~~~d~  339 (725)
                      ++++|+|.|.+|.+++..+.+. +.+|++||+
T Consensus        24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            6899999999999999999998 678999987

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=95.52  E-value=0.37  Score=55.29  Aligned_cols=140  Identities=17%  Similarity=0.085  Sum_probs=85.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHH--HHHhhCCCcEE
Q 004891           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV--NLIEDCKKPIV  102 (725)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~kp~I  102 (725)
                      -.+++....+.+.++++.+.+. .+-+|.|.-.|+.+     +.+ .    .+ ........-+++.  ..+.....|.|
T Consensus       142 GGs~g~~~~~Ki~r~~elA~~~-~lPlV~l~DSgGar-----l~~-q----~e-~~~~~~~~g~if~~~~~ls~~~VP~I  209 (569)
T PLN02820        142 GGTYYPITVKKHLRAQEIAAQC-RLPCIYLVDSGGAN-----LPR-Q----AE-VFPDRDHFGRIFYNQARMSSAGIPQI  209 (569)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcC-----Ccc-c----cc-ccchHhHHHHHHHHHHHHhCCCCCEE
Confidence            4799999999999999988765 45677775433332     211 0    00 0000001112221  22445679999


Q ss_pred             EEEcccccchhhHHhhhcCEEEeeCC-ceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHHH------
Q 004891          103 AAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGW------  175 (725)
Q Consensus       103 aav~G~a~GgG~~lalacD~~ia~~~-a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~------  175 (725)
                      ++|.|.|.|||......||++|++++ +.+++.                    |+...+  ..+|+.+++++.-      
T Consensus       210 svv~G~~~gGgAy~~a~~D~vim~~~~a~i~~a--------------------GP~vV~--~~~Ge~v~~eeLGGa~~h~  267 (569)
T PLN02820        210 ALVLGSCTAGGAYVPAMADESVIVKGNGTIFLA--------------------GPPLVK--AATGEEVSAEDLGGADVHC  267 (569)
T ss_pred             EEEeCCCChHHHHHHHhCCceEEecCCcEEEec--------------------CHHHHH--hhcCcccCHHHhCCHHHhc
Confidence            99999999999999999999999954 555531                    222221  1356667776652      


Q ss_pred             -HcCCcceecCcchHHHHHHHHHHHHH
Q 004891          176 -KLGLIDAVVTSEELLKVSRLWALDIA  201 (725)
Q Consensus       176 -~~Glv~~vv~~~~l~~~a~~~a~~la  201 (725)
                       ..|.+|.+++.+   .++...++++.
T Consensus       268 ~~sGv~d~~~~de---~~a~~~~R~ll  291 (569)
T PLN02820        268 KVSGVSDHFAQDE---LHALAIGRNIV  291 (569)
T ss_pred             ccccccccccCch---HHHHHHHHHHH
Confidence             478888887655   33444444433

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=95.45  E-value=0.031  Score=60.16  Aligned_cols=33  Identities=21%  Similarity=0.438  Sum_probs=30.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCh
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~  341 (725)
                      .||.|||+|.+|+.+|..|+++|+ +++++|.+.
T Consensus        25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            579999999999999999999998 899999875

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=95.45  E-value=0.056  Score=55.76  Aligned_cols=93  Identities=23%  Similarity=0.288  Sum_probs=64.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccc----ccCc-c
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG----VLDY-S  383 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~----~~~~-~  383 (725)
                      .||+|||.|..|.--|+...--|-+|++.|+|.+++...-+.+         .            .++..    ..++ +
T Consensus       169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f---------~------------~rv~~~~st~~~iee  227 (371)
T COG0686         169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLF---------G------------GRVHTLYSTPSNIEE  227 (371)
T ss_pred             ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhh---------C------------ceeEEEEcCHHHHHH
Confidence            6899999999999999988888999999999999877643211         1            12111    1122 6


Q ss_pred             cccCCCEEEEecc-CChHHHHHHHHHHHHhCCCCeEEEec
Q 004891          384 EFKDVDMVIEAVI-ESVPLKQKIFSELEKACPPHCILATN  422 (725)
Q Consensus       384 ~l~~aDlVIeavp-e~~~~k~~v~~~l~~~~~~~~ii~s~  422 (725)
                      .+..+|+||-+|- .....=+-+.++..+.++|+.+|++.
T Consensus       228 ~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDV  267 (371)
T COG0686         228 AVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDV  267 (371)
T ss_pred             HhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEE
Confidence            6899999998871 11111123456667778999988753

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=95.41  E-value=0.017  Score=63.71  Aligned_cols=38  Identities=26%  Similarity=0.302  Sum_probs=32.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHCC-C-cEEEEeCChHHHHHHH
Q 004891          311 VAVIGGGLMGSGIATAHILNN-I-YVVLKEVNSEYLLKGI  348 (725)
Q Consensus       311 IaVIG~G~mG~~iA~~l~~~G-~-~V~~~d~~~e~~~~~~  348 (725)
                      |.|+|+|.+|+.++..|++.+ + +|++.|++.+++++..
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~   40 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLA   40 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHH
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHH
Confidence            789999999999999999986 4 8999999999987764

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK07589 ornithine cyclodeaminase; Validated

Probab=95.39  E-value=0.058  Score=58.08  Aligned_cols=95  Identities=15%  Similarity=0.183  Sum_probs=61.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~--G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      ++++|||+|..+...+..++.-  --+|++|++++++.++..+++++       .+ +          .+...++. +++
T Consensus       130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~-------~~-~----------~v~~~~~~~~av  191 (346)
T PRK07589        130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG-------PG-L----------RIVACRSVAEAV  191 (346)
T ss_pred             cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh-------cC-C----------cEEEeCCHHHHH
Confidence            6799999999998887766542  33899999999998876554321       11 0          13334455 678


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~  425 (725)
                      ++||+|+.|.+....  ..+|.  .+.++|++.|....|.
T Consensus       192 ~~ADIIvtaT~S~~~--~Pvl~--~~~lkpG~hV~aIGs~  227 (346)
T PRK07589        192 EGADIITTVTADKTN--ATILT--DDMVEPGMHINAVGGD  227 (346)
T ss_pred             hcCCEEEEecCCCCC--Cceec--HHHcCCCcEEEecCCC
Confidence            999999999863210  01111  1346788876554443

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.34  E-value=0.056  Score=61.01  Aligned_cols=40  Identities=25%  Similarity=0.123  Sum_probs=37.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~  348 (725)
                      .||.|+|+|.+|...++.+...|.+|+++|+++++++.+.
T Consensus       166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~ae  205 (509)
T PRK09424        166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVE  205 (509)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            6899999999999999999999999999999999988764

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=95.28  E-value=0.053  Score=56.38  Aligned_cols=78  Identities=15%  Similarity=0.178  Sum_probs=45.8

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHC-CCcEEE-EeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILN-NIYVVL-KEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~-G~~V~~-~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l  385 (725)
                      |.||+|||+|.||..++..+.+. +.++.. ++++.. .++..+.        ..             ..+..+++++.+
T Consensus         1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~-~~~~~~~--------~~-------------~~~~~~~d~~~l   58 (265)
T PRK13303          1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS-IDAVRRA--------LG-------------EAVRVVSSVDAL   58 (265)
T ss_pred             CcEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCC-HHHHhhh--------hc-------------cCCeeeCCHHHh
Confidence            35899999999999999999876 556543 343321 1111100        00             013334555444


Q ss_pred             -cCCCEEEEeccCChHHHHHHHHHH
Q 004891          386 -KDVDMVIEAVIESVPLKQKIFSEL  409 (725)
Q Consensus       386 -~~aDlVIeavpe~~~~k~~v~~~l  409 (725)
                       .+.|+|++|.|..  .-.++..+.
T Consensus        59 ~~~~DvVve~t~~~--~~~e~~~~a   81 (265)
T PRK13303         59 PQRPDLVVECAGHA--ALKEHVVPI   81 (265)
T ss_pred             ccCCCEEEECCCHH--HHHHHHHHH
Confidence             5689999999843  333444443

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.20  E-value=0.54  Score=50.13  Aligned_cols=40  Identities=23%  Similarity=0.131  Sum_probs=33.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~  348 (725)
                      ++|+|+|+|-+|..-.+.....|.+|+++|+++++++.++
T Consensus       168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~  207 (339)
T COG1064         168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAK  207 (339)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHH
Confidence            6899999997776666666668999999999999988765

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.18  E-value=0.049  Score=56.95  Aligned_cols=70  Identities=17%  Similarity=0.243  Sum_probs=51.4

Q ss_pred             ceEEEEcCCC-CcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~-mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      ++|.|||.|. .|.++|..|.+.|..|+++++....+.                                     +.+++
T Consensus       160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~-------------------------------------~~~~~  202 (283)
T PRK14192        160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLP-------------------------------------ELVKQ  202 (283)
T ss_pred             CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHH-------------------------------------HHhcc
Confidence            5899999997 999999999999999999997432211                                     23478


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEec
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATN  422 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~  422 (725)
                      +|+||.|++.+.-+.       .+.+++++++++.
T Consensus       203 aDIvI~AtG~~~~v~-------~~~lk~gavViDv  230 (283)
T PRK14192        203 ADIIVGAVGKPELIK-------KDWIKQGAVVVDA  230 (283)
T ss_pred             CCEEEEccCCCCcCC-------HHHcCCCCEEEEE
Confidence            999999995222121       1346788887754

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.12  E-value=0.097  Score=58.95  Aligned_cols=39  Identities=23%  Similarity=0.285  Sum_probs=35.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~  347 (725)
                      +||.|+|+|.+|..+|..|.+.|++|+++|++++.++..
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~   39 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRL   39 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHH
Confidence            379999999999999999999999999999999987664

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=95.08  E-value=0.2  Score=52.26  Aligned_cols=89  Identities=15%  Similarity=0.060  Sum_probs=65.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCh-HHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS-EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~-e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      +++||+|.|.+|+-.|.++..-|..|+.||.-. .....+             .             .++..+-.+.+..
T Consensus       147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a-------------~-------------gvq~vsl~Eil~~  200 (406)
T KOG0068|consen  147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEA-------------F-------------GVQLVSLEEILPK  200 (406)
T ss_pred             cEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHHh-------------c-------------cceeeeHHHHHhh
Confidence            689999999999999999999999999998643 222111             1             1233333367889


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  424 (725)
                      ||+|-.-+|-.++.+.-+-.+....++.+.-|+ |+|
T Consensus       201 ADFitlH~PLtP~T~~lin~~tfA~mKkGVriI-N~a  236 (406)
T KOG0068|consen  201 ADFITLHVPLTPSTEKLLNDETFAKMKKGVRII-NVA  236 (406)
T ss_pred             cCEEEEccCCCcchhhccCHHHHHHhhCCcEEE-Eec
Confidence            999999999777776666666777788888775 444

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.07  E-value=0.39  Score=49.82  Aligned_cols=41  Identities=22%  Similarity=0.267  Sum_probs=37.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK  349 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~  349 (725)
                      .+++|+|+|.+|.+.++....+|. +++.+|+|+++.+.+.+
T Consensus       194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~  235 (375)
T KOG0022|consen  194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE  235 (375)
T ss_pred             CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence            579999999999999999999987 89999999999888753

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=95.03  E-value=0.087  Score=61.06  Aligned_cols=96  Identities=13%  Similarity=0.130  Sum_probs=61.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  388 (725)
                      .+|-|+|+|.+|..+|+.|.+.|++|+++|.|+++++.+.+.     ...+-.|..++.+.-          ....+++|
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-----g~~~i~GD~~~~~~L----------~~a~i~~a  482 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-----GIRAVLGNAANEEIM----------QLAHLDCA  482 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-----CCeEEEcCCCCHHHH----------HhcCcccc
Confidence            679999999999999999999999999999999988776421     000011111100000          00246789


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCeEEE
Q 004891          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILA  420 (725)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~  420 (725)
                      |.|+.+++++.+... +...+.+..+.-.|++
T Consensus       483 ~~viv~~~~~~~~~~-iv~~~~~~~~~~~iia  513 (558)
T PRK10669        483 RWLLLTIPNGYEAGE-IVASAREKRPDIEIIA  513 (558)
T ss_pred             CEEEEEcCChHHHHH-HHHHHHHHCCCCeEEE
Confidence            999999987765432 3333444443334554

>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase

Probab=95.03  E-value=0.82  Score=46.55  Aligned_cols=106  Identities=15%  Similarity=0.148  Sum_probs=72.5

Q ss_pred             ccCcccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcc---cCC-CCcEEEEecCCCCCCCC
Q 004891          379 VLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEK---TSS-QDRIIGAHFFSPAHVMP  454 (725)
Q Consensus       379 ~~~~~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~---~~~-~~r~ig~h~~~p~~~~~  454 (725)
                      ++|.++++++|++|.-.|..-. .-.+.+++.+.+++++|| +||.+++...+...   +.+ .-.+..+||-.-|..-.
T Consensus       131 sDD~EAv~~aei~I~ftPfG~~-q~~Iikkii~~lpEgAII-~~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaaVPgt~~  208 (340)
T TIGR01723       131 TDDREAVEDADIIITWLPKGNK-QPDIIKKFIDDIPEGAIV-THACTIPTTKFAKIFEDLGREDLNVTSYHPGCVPEMKG  208 (340)
T ss_pred             cCcHHHhcCCCEEEEEcCCCCC-chHHHHHHHhhCCCCCEE-eccccCChHHHHHHHHhhCcccCCeeccCCCCCCCCCC
Confidence            4455899999999999985432 236778888999999988 57777777644433   332 23456667643221112


Q ss_pred             eeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004891          455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG  487 (725)
Q Consensus       455 lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~  487 (725)
                      -+=++. ...++|.++++.++.+..|+.+.++.
T Consensus       209 q~Yi~e-gyAtEEqI~klveL~~sa~k~ay~~P  240 (340)
T TIGR01723       209 QVYIAE-GYASEEAVNKLYELGKKARGKAFKMP  240 (340)
T ss_pred             ceEeec-ccCCHHHHHHHHHHHHHhCCCeeecc
Confidence            222333 34689999999999999999999873

This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.

>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]

Probab=95.01  E-value=0.41  Score=48.50  Aligned_cols=161  Identities=15%  Similarity=0.187  Sum_probs=103.7

Q ss_pred             EEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHH
Q 004891           15 VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL   93 (725)
Q Consensus        15 v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (725)
                      ++...++-. -.-++..-.=+.+..+++.+-++ .+.+|+++..|+     +-++|-.-    . ..++.. ....+ ..
T Consensus       124 vv~av~df~FmgGSmGsVvGeki~ra~E~A~e~-k~P~v~f~aSGG-----ARMQEg~l----S-LMQMak-tsaAl-~~  190 (294)
T COG0777         124 VVLAVMDFAFMGGSMGSVVGEKITRAIERAIED-KLPLVLFSASGG-----ARMQEGIL----S-LMQMAK-TSAAL-KR  190 (294)
T ss_pred             EEEEEEeccccccchhHHHHHHHHHHHHHHHHh-CCCEEEEecCcc-----hhHhHHHH----H-HHHHHH-HHHHH-HH
Confidence            333444333 23567777778888999888765 578899987653     22222100    0 011111 12334 45


Q ss_pred             HhhCCCcEEEEEcccccch-hhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHH
Q 004891           94 IEDCKKPIVAAVEGLALGG-GLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE  172 (725)
Q Consensus        94 l~~~~kp~Iaav~G~a~Gg-G~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~  172 (725)
                      +..-..|.|+.+..+..|| -..+++..|+.||.+.|.+||...++           .-     +..++-+--| --+++
T Consensus       191 l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRV-----------IE-----QTire~LPeg-fQ~aE  253 (294)
T COG0777         191 LSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRV-----------IE-----QTIREKLPEG-FQTAE  253 (294)
T ss_pred             HHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcchh-----------hh-----hhhcccCCcc-hhhHH
Confidence            7888999999999999988 57999999999999999888753321           00     1111111111 23678


Q ss_pred             HHHHcCCcceecCcchHHHHHHHHHHHHHhcCc
Q 004891          173 EGWKLGLIDAVVTSEELLKVSRLWALDIAARRK  205 (725)
Q Consensus       173 eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~  205 (725)
                      -.++.|+||.||+..++......+...+...++
T Consensus       254 fLlehG~iD~iv~R~elr~tla~ll~~~~~~~~  286 (294)
T COG0777         254 FLLEHGMIDMIVHRDELRTTLASLLAKLTPQPA  286 (294)
T ss_pred             HHHHcCCceeeecHHHHHHHHHHHHHHhCCCCC
Confidence            889999999999999998887777766655443

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=94.99  E-value=0.12  Score=60.23  Aligned_cols=96  Identities=20%  Similarity=0.134  Sum_probs=61.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  388 (725)
                      ++|.|+|.|.+|..+++.|.+.|++|+++|.|+++++.+.+.     ...+-.|..+..+.-          ....+++|
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~~~L----------~~agi~~A  465 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY-----GYKVYYGDATQLELL----------RAAGAEKA  465 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC-----CCeEEEeeCCCHHHH----------HhcCCccC
Confidence            579999999999999999999999999999999998775421     000001111100000          00346789


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCeEEE
Q 004891          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILA  420 (725)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~  420 (725)
                      |.||.+++++... ..+...+.+..+.-.|++
T Consensus       466 ~~vv~~~~d~~~n-~~i~~~~r~~~p~~~Iia  496 (601)
T PRK03659        466 EAIVITCNEPEDT-MKIVELCQQHFPHLHILA  496 (601)
T ss_pred             CEEEEEeCCHHHH-HHHHHHHHHHCCCCeEEE
Confidence            9999999865443 333344555444445554

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=94.94  E-value=0.07  Score=54.90  Aligned_cols=48  Identities=15%  Similarity=0.144  Sum_probs=42.0

Q ss_pred             CCcceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHH
Q 004891          306 RGVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEA  353 (725)
Q Consensus       306 ~~~~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~  353 (725)
                      +..+++.|-|+ +-+|..+|..|++.|++|+++.|+++++++..+++++
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~   52 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELED   52 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHH
Confidence            34567888898 9999999999999999999999999999988776654

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=94.89  E-value=0.075  Score=59.86  Aligned_cols=40  Identities=25%  Similarity=0.136  Sum_probs=36.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~  348 (725)
                      .||.|+|+|.+|...+..+...|..|+++|+++++++.+.
T Consensus       165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~  204 (511)
T TIGR00561       165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ  204 (511)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            6899999999999999999999999999999999877654

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=94.80  E-value=0.052  Score=56.92  Aligned_cols=41  Identities=15%  Similarity=0.268  Sum_probs=36.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK  349 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~  349 (725)
                      ++|.|+|+|-.|++++..|++.|. +|+++||+.++++...+
T Consensus       128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~  169 (283)
T PRK14027        128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALAD  169 (283)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Confidence            579999999999999999999997 79999999988776544

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.79  E-value=0.14  Score=57.58  Aligned_cols=41  Identities=27%  Similarity=0.289  Sum_probs=37.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~  348 (725)
                      .++|.|+|+|.+|..++..|.+.|++|+++|.+++..+...
T Consensus       231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~  271 (453)
T PRK09496        231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELA  271 (453)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHH
Confidence            47899999999999999999999999999999999877653

>PRK06153 hypothetical protein; Provisional

Probab=94.77  E-value=0.074  Score=57.32  Aligned_cols=32  Identities=25%  Similarity=0.267  Sum_probs=29.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN  340 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~  340 (725)
                      .+|+|||+|-.|+.++..|++.|. +++++|-+
T Consensus       177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D  209 (393)
T PRK06153        177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD  209 (393)
T ss_pred             CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence            479999999999999999999998 89999876

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=94.69  E-value=0.098  Score=53.12  Aligned_cols=160  Identities=13%  Similarity=0.117  Sum_probs=80.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhh-------------cC
Q 004891          310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNAL-------------KM  375 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~-------------~~  375 (725)
                      ||.|||+|..|+.++..|+..|. +++++|.+.-.......   +.+-+..+-|.-..+.+...+             .+
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnR---Qflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~   77 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNR---QFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNK   77 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhcc---ccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEecc
Confidence            58999999999999999999998 78888876322111100   000000011111111111111             11


Q ss_pred             cccccC--cccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEe-cCCCCChHHHhcccCCCCcEEEEecCCCCCC
Q 004891          376 LKGVLD--YSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT-NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHV  452 (725)
Q Consensus       376 i~~~~~--~~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s-~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~  452 (725)
                      +....+  .+.+++.|+||.|+- +... +..+.+.....  +..++. .+.+..- ...-..+........++..+...
T Consensus        78 i~~~~~~~~~f~~~~DvVi~a~D-n~~a-R~~ln~~c~~~--~iplI~~g~~G~~G-~v~vi~p~~t~c~~C~~~~~~~~  152 (234)
T cd01484          78 VGPEQDFNDTFFEQFHIIVNALD-NIIA-RRYVNGMLIFL--IVPLIESGTEGFKG-NAQVILPGMTECIECTLYPPQKN  152 (234)
T ss_pred             CChhhhchHHHHhCCCEEEECCC-CHHH-HHHHHHHHHHc--CCCEEEEcccCCce-EEEEEcCCCCCCcccCCCCCCCC
Confidence            110011  134688999999974 4443 34344432222  233332 2222221 11111111122333344344445


Q ss_pred             CCeeeEecCCCCCHHHHHHHHHHHH
Q 004891          453 MPLLEIVRTERTSAQVILDLMTVGK  477 (725)
Q Consensus       453 ~~lveii~~~~t~~e~~~~~~~l~~  477 (725)
                      .|...+-..|.+.+..++.++.++.
T Consensus       153 ~p~Cti~~~P~~~~hci~~a~~~~~  177 (234)
T cd01484         153 FPMCTIASMPRLPEHCIEWARMLQW  177 (234)
T ss_pred             CCccccCCCCCCchHHHHHHHHHHh
Confidence            5777777788888888888888875

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=94.68  E-value=0.17  Score=51.19  Aligned_cols=32  Identities=22%  Similarity=0.343  Sum_probs=30.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCc---EEEEeCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIY---VVLKEVN  340 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~---V~~~d~~  340 (725)
                      +||.|+|+|.+|.++|..|...|..   |+++|++
T Consensus        26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            5899999999999999999999985   9999999

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=94.68  E-value=0.14  Score=46.03  Aligned_cols=80  Identities=15%  Similarity=0.145  Sum_probs=54.4

Q ss_pred             ceEEEEc----CCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccc
Q 004891          309 RKVAVIG----GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (725)
Q Consensus       309 ~kIaVIG----~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (725)
                      ++|+|||    -+..|.-+...|.+.|++|+.++...+.+                             ..+....++++
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----------------------------~G~~~y~sl~e   51 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----------------------------LGIKCYPSLAE   51 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----------------------------TTEE-BSSGGG
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----------------------------CcEEeeccccC
Confidence            5799999    58889999999999999999998765331                             12334455543


Q ss_pred             c-cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEE
Q 004891          385 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  420 (725)
Q Consensus       385 l-~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~  420 (725)
                      . ...|+++.++|  .+...++++++.+. ....+++
T Consensus        52 ~p~~iDlavv~~~--~~~~~~~v~~~~~~-g~~~v~~   85 (116)
T PF13380_consen   52 IPEPIDLAVVCVP--PDKVPEIVDEAAAL-GVKAVWL   85 (116)
T ss_dssp             CSST-SEEEE-S---HHHHHHHHHHHHHH-T-SEEEE
T ss_pred             CCCCCCEEEEEcC--HHHHHHHHHHHHHc-CCCEEEE
Confidence            4 78999999998  77777888887765 3444443

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=94.67  E-value=0.024  Score=62.90  Aligned_cols=34  Identities=26%  Similarity=0.346  Sum_probs=32.0

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCh
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (725)
                      |.+|.|||+|.+|.++|..|++.|++|+++|++.
T Consensus         1 ~~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~   34 (410)
T PRK12409          1 MSHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR   34 (410)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            4699999999999999999999999999999875

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=94.64  E-value=0.081  Score=57.07  Aligned_cols=106  Identities=14%  Similarity=0.043  Sum_probs=56.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHH-HhhcCcccccCc-cc
Q 004891          309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKAN-NALKMLKGVLDY-SE  384 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~-~~~~~i~~~~~~-~~  384 (725)
                      .||+|+|+|.||..++..+... +++|+ +.|.+++..+...+..  .++.   .+.. +.... -.-..+....++ +.
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~--G~~~---~~~~-~~~~~~~~~~~i~V~~~~~el   75 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEK--GYPL---YVAD-PEREKAFEEAGIPVAGTIEDL   75 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhc--CCCc---cccC-ccccccccCCceEEcCChhHh
Confidence            5899999999999999988764 66766 4565654433322110  0000   0000 00000 000123333344 34


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004891          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (725)
Q Consensus       385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~  425 (725)
                      +.++|+||+|.|....  .+....   ++..++.++++++.
T Consensus        76 ~~~vDVVIdaT~~~~~--~e~a~~---~~~aGk~VI~~~~~  111 (341)
T PRK04207         76 LEKADIVVDATPGGVG--AKNKEL---YEKAGVKAIFQGGE  111 (341)
T ss_pred             hccCCEEEECCCchhh--HHHHHH---HHHCCCEEEEcCCC
Confidence            5789999999984433  333333   33456666666664

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.63  E-value=0.079  Score=55.09  Aligned_cols=70  Identities=17%  Similarity=0.276  Sum_probs=53.4

Q ss_pred             ceEEEEcCCCC-cHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          309 RKVAVIGGGLM-GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~m-G~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      ++|.|||.|.. |.++|..|.+.|..|+++.....                                      ++ +.++
T Consensus       159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~--------------------------------------~l~~~~~  200 (285)
T PRK14189        159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTR--------------------------------------DLAAHTR  200 (285)
T ss_pred             CEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCC--------------------------------------CHHHHhh
Confidence            68999999877 99999999999999998754321                                      22 3568


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (725)
                      +||+||.+++..     .++..  ..+++++++++..
T Consensus       201 ~ADIVV~avG~~-----~~i~~--~~ik~gavVIDVG  230 (285)
T PRK14189        201 QADIVVAAVGKR-----NVLTA--DMVKPGATVIDVG  230 (285)
T ss_pred             hCCEEEEcCCCc-----CccCH--HHcCCCCEEEEcc
Confidence            899999999832     23332  5688999988654

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=94.61  E-value=0.066  Score=57.68  Aligned_cols=33  Identities=21%  Similarity=0.414  Sum_probs=30.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCh
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~  341 (725)
                      .||.|||+|.+|+.+|..|+++|. +++++|.+.
T Consensus        25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            579999999999999999999999 999999874

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=94.61  E-value=0.24  Score=47.03  Aligned_cols=32  Identities=22%  Similarity=0.332  Sum_probs=29.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN  340 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~  340 (725)
                      ++|.|||+|.+|...+..|.+.|++|++++.+
T Consensus        14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~   45 (157)
T PRK06719         14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE   45 (157)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence            68999999999999999999999999999643

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=94.60  E-value=0.044  Score=57.75  Aligned_cols=34  Identities=21%  Similarity=0.419  Sum_probs=31.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCc-EEEEeCChH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSE  342 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~-V~~~d~~~e  342 (725)
                      +++.|+|+|-+|.+++..|++.|++ |++++|+++
T Consensus       127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~  161 (289)
T PRK12548        127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD  161 (289)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch
Confidence            5788999999999999999999996 999999973

>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional

Probab=94.58  E-value=0.04  Score=60.58  Aligned_cols=40  Identities=25%  Similarity=0.266  Sum_probs=33.9

Q ss_pred             ceEEEEcCCCCcHHH-HHHHHHCCCcEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGI-ATAHILNNIYVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~G~mG~~i-A~~l~~~G~~V~~~d~~~e~~~~~~  348 (725)
                      +||.++|+|.||++. ...|.++|++|+++|++++.++...
T Consensus         1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~   41 (381)
T PRK02318          1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALN   41 (381)
T ss_pred             CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHh
Confidence            479999999999855 8888899999999999888666543

>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]

Probab=94.54  E-value=0.099  Score=53.27  Aligned_cols=84  Identities=21%  Similarity=0.210  Sum_probs=64.4

Q ss_pred             HHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHH
Q 004891           93 LIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE  172 (725)
Q Consensus        93 ~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~  172 (725)
                      .+.+++.|+||.|=|---+||.-=..-+|.+.|.+.+.|+.      +.|.++++..+..   ..+|.+. .....++|+
T Consensus       183 em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~AsILWkD---~~ka~eA-Ae~mkita~  252 (317)
T COG0825         183 EMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCASILWKD---ASKAKEA-AEAMKITAH  252 (317)
T ss_pred             HHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhhhhhcC---hhhhHHH-HHHcCCCHH
Confidence            48899999999999987777776666789999999999874      4566666655543   2334333 344679999


Q ss_pred             HHHHcCCcceecCc
Q 004891          173 EGWKLGLIDAVVTS  186 (725)
Q Consensus       173 eA~~~Glv~~vv~~  186 (725)
                      +.+++|+||.|+|.
T Consensus       253 dLk~lgiID~II~E  266 (317)
T COG0825         253 DLKELGIIDGIIPE  266 (317)
T ss_pred             HHHhCCCcceeccC
Confidence            99999999999963

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=94.51  E-value=0.048  Score=45.28  Aligned_cols=35  Identities=37%  Similarity=0.470  Sum_probs=32.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHH
Q 004891          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL  344 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~  344 (725)
                      ||.|||+|..|.-+|..|++.|.+|+++++++.-.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            68999999999999999999999999999987654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK06199 ornithine cyclodeaminase; Validated

Probab=94.47  E-value=0.071  Score=58.26  Aligned_cols=74  Identities=18%  Similarity=0.153  Sum_probs=52.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHC--CC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-c
Q 004891          308 VRKVAVIGGGLMGSGIATAHILN--NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~--G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (725)
                      .++++|||+|.++......++.-  .+ +|.+|+|+++++++..+++...+.     +.          ..+...++. +
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~-----~~----------~~v~~~~s~~e  219 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYP-----QI----------TNVEVVDSIEE  219 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcC-----CC----------ceEEEeCCHHH
Confidence            36799999999999999888763  23 899999999998876554332110     10          013334455 6


Q ss_pred             cccCCCEEEEecc
Q 004891          384 EFKDVDMVIEAVI  396 (725)
Q Consensus       384 ~l~~aDlVIeavp  396 (725)
                      ++++||+|+.|.+
T Consensus       220 av~~ADIVvtaT~  232 (379)
T PRK06199        220 VVRGSDIVTYCNS  232 (379)
T ss_pred             HHcCCCEEEEccC
Confidence            7899999998885

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=94.44  E-value=0.83  Score=48.05  Aligned_cols=97  Identities=19%  Similarity=0.193  Sum_probs=55.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCC-HHHHHHhhcCcccccCcccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLT-QDKANNALKMLKGVLDYSEF  385 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~l  385 (725)
                      .||||||+|.+|...+..+.+. +.++. ++|+++++......         .+.|.-. ....+..+.       ...+
T Consensus         5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A---------~~~Gi~~~~~~ie~LL~-------~~~~   68 (302)
T PRK08300          5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARA---------RRLGVATSAEGIDGLLA-------MPEF   68 (302)
T ss_pred             CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHH---------HHcCCCcccCCHHHHHh-------CcCC
Confidence            5799999999999988777754 56665 77998865321111         0112110 001111110       0124


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI  426 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~  426 (725)
                      .+.|+|+++.|....  .+....   ....++.++++++..
T Consensus        69 ~dIDiVf~AT~a~~H--~e~a~~---a~eaGk~VID~sPA~  104 (302)
T PRK08300         69 DDIDIVFDATSAGAH--VRHAAK---LREAGIRAIDLTPAA  104 (302)
T ss_pred             CCCCEEEECCCHHHH--HHHHHH---HHHcCCeEEECCccc
Confidence            679999999984333  333333   345678888777654

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=94.32  E-value=0.034  Score=54.51  Aligned_cols=57  Identities=21%  Similarity=0.239  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHH--hCHHHH
Q 004891          623 EIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADA--VGANYV  680 (725)
Q Consensus       623 ~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~--~G~~~~  680 (725)
                      ...||+.++++||.-+++..||. +..|+|..|..|+|.+..-.||++.+-.  -|+...
T Consensus       190 f~lnriq~Ailne~wrLvasGil-~v~dvD~VmS~GLG~RYAflG~lET~HLNA~Gv~dY  248 (313)
T KOG2305|consen  190 FALNRIQYAILNETWRLVASGIL-NVNDVDAVMSAGLGPRYAFLGPLETAHLNAEGVADY  248 (313)
T ss_pred             ceeccccHHHHHHHHHHHHccCc-chhhHHHHHhcCCCcchhcccchhhhhcCcHHHHHH
Confidence            36899999999999999999999 8999999999999988888999997643  354333

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=94.30  E-value=0.14  Score=55.42  Aligned_cols=100  Identities=17%  Similarity=0.169  Sum_probs=57.6

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHC-CCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc--c
Q 004891          308 VRKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--S  383 (725)
Q Consensus       308 ~~kIaVIG~-G~mG~~iA~~l~~~-G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~--~  383 (725)
                      |.||+|||+ |.+|..++..|.+. +++++.+-.+.+..+...+.    ....  .+..          ... ..+.  .
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~----~~~~--~~~~----------~~~-~~~~~~~   64 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDV----HPHL--RGLV----------DLV-LEPLDPE   64 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHh----Cccc--cccc----------Cce-eecCCHH
Confidence            469999997 99999999999876 66765543332221111100    0000  0000          001 1111  1


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 004891          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  429 (725)
Q Consensus       384 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~  429 (725)
                      ...++|+|+.|+|.+..  .++..++.   ..++.|+++++...+.
T Consensus        65 ~~~~vD~Vf~alP~~~~--~~~v~~a~---~aG~~VID~S~~fR~~  105 (343)
T PRK00436         65 ILAGADVVFLALPHGVS--MDLAPQLL---EAGVKVIDLSADFRLK  105 (343)
T ss_pred             HhcCCCEEEECCCcHHH--HHHHHHHH---hCCCEEEECCcccCCC
Confidence            34679999999995433  34444432   4688888998877663

>PLN03075 nicotianamine synthase; Provisional

Probab=94.24  E-value=0.34  Score=50.79  Aligned_cols=101  Identities=18%  Similarity=0.143  Sum_probs=67.1

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccc-cCc--
Q 004891          308 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY--  382 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~--G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~--  382 (725)
                      -++|+.||+|..|.+-...++..  +-.++.+|++++.++.+++.+..      ..+ +        -.++++. .|.  
T Consensus       124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~------~~g-L--------~~rV~F~~~Da~~  188 (296)
T PLN03075        124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS------DPD-L--------SKRMFFHTADVMD  188 (296)
T ss_pred             CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh------ccC-c--------cCCcEEEECchhh
Confidence            37899999999876554444333  34799999999999888754321      011 0        0123332 111  


Q ss_pred             --ccccCCCEEEEeccC--ChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891          383 --SEFKDVDMVIEAVIE--SVPLKQKIFSELEKACPPHCILATNT  423 (725)
Q Consensus       383 --~~l~~aDlVIeavpe--~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (725)
                        ....+.|+|+..+--  +..-+.++++.+.+.++||.+++.-+
T Consensus       189 ~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        189 VTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             cccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence              235689999988622  23678899999999999999887544

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=94.11  E-value=0.12  Score=48.19  Aligned_cols=32  Identities=25%  Similarity=0.404  Sum_probs=29.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCh
Q 004891          310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~  341 (725)
                      ||.|||+|.+|+.++..|++.|. +++++|.+.
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            58999999999999999999998 799999763

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=94.07  E-value=0.11  Score=53.08  Aligned_cols=98  Identities=16%  Similarity=0.145  Sum_probs=55.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCC-----------CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCc-
Q 004891          309 RKVAVIGGGLMGSGIATAHILNN-----------IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML-  376 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G-----------~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-  376 (725)
                      .||.|||+|-.|+.++..|++.|           .+++++|.+.=....    +.+++-...+-|....+.....+..+ 
T Consensus        12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sN----LnRQlf~~~dVG~~Ka~v~~~ri~~~~   87 (244)
T TIGR03736        12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEAN----VGRQAFYPADVGQNKAIVLVNRLNQAM   87 (244)
T ss_pred             CeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccch----hhcccCChhHCCcHHHHHHHHHHHhcc
Confidence            58999999999999999999974           289999976322111    11111111122222222222222211 


Q ss_pred             ----ccccC----cccccCCCEEEEeccCChHHHHHHHHHHHH
Q 004891          377 ----KGVLD----YSEFKDVDMVIEAVIESVPLKQKIFSELEK  411 (725)
Q Consensus       377 ----~~~~~----~~~l~~aDlVIeavpe~~~~k~~v~~~l~~  411 (725)
                          .....    .+.+.++|+||.|+ ++...+..+.+....
T Consensus        88 ~~~i~a~~~~~~~~~~~~~~DiVi~av-Dn~~aR~~l~~~~~~  129 (244)
T TIGR03736        88 GTDWTAHPERVERSSTLHRPDIVIGCV-DNRAARLAILRAFEG  129 (244)
T ss_pred             CceEEEEEeeeCchhhhcCCCEEEECC-CCHHHHHHHHHHHHH
Confidence                11110    12356799999998 467777777666554

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=94.06  E-value=0.14  Score=53.17  Aligned_cols=32  Identities=34%  Similarity=0.436  Sum_probs=26.2

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHH-CCCcEE-EEeCC
Q 004891          309 RKVAVIG-GGLMGSGIATAHIL-NNIYVV-LKEVN  340 (725)
Q Consensus       309 ~kIaVIG-~G~mG~~iA~~l~~-~G~~V~-~~d~~  340 (725)
                      .||+|+| +|.||..++..+.+ .+++++ ++|++
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~   36 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERH   36 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence            4899999 59999999999986 578766 57743

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=94.05  E-value=0.12  Score=45.31  Aligned_cols=72  Identities=19%  Similarity=0.413  Sum_probs=49.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccccc-Cc-cccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DY-SEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~-~~l~  386 (725)
                      ++|.|||.|.+|..=+..|.+.|.+|+++..+.+..+                +            .++... .+ +.+.
T Consensus         8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----------------~------------~i~~~~~~~~~~l~   59 (103)
T PF13241_consen    8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----------------G------------LIQLIRREFEEDLD   59 (103)
T ss_dssp             -EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----------------T------------SCEEEESS-GGGCT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----------------h------------HHHHHhhhHHHHHh
Confidence            6899999999999999999999999999999861111                1            111111 11 5688


Q ss_pred             CCCEEEEeccCChHHHHHHHHHH
Q 004891          387 DVDMVIEAVIESVPLKQKIFSEL  409 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l  409 (725)
                      ++|+||.|. ++..+.+.+...-
T Consensus        60 ~~~lV~~at-~d~~~n~~i~~~a   81 (103)
T PF13241_consen   60 GADLVFAAT-DDPELNEAIYADA   81 (103)
T ss_dssp             TESEEEE-S-S-HHHHHHHHHHH
T ss_pred             hheEEEecC-CCHHHHHHHHHHH
Confidence            899999765 4666666665544

>PRK12829 short chain dehydrogenase; Provisional

Probab=94.01  E-value=0.25  Score=50.86  Aligned_cols=39  Identities=28%  Similarity=0.286  Sum_probs=34.7

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~  347 (725)
                      ++|.|+|+ |.+|..++..|++.|++|++.+++++..+..
T Consensus        12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~   51 (264)
T PRK12829         12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAAT   51 (264)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            68999987 9999999999999999999999998766554

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=94.00  E-value=0.085  Score=55.48  Aligned_cols=34  Identities=15%  Similarity=0.319  Sum_probs=31.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE  342 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e  342 (725)
                      +++.|||+|-.+++++..++..|. +|++++|+++
T Consensus       125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~  159 (288)
T PRK12749        125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE  159 (288)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence            579999999999999999999997 8999999965

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.99  E-value=0.32  Score=55.39  Aligned_cols=35  Identities=17%  Similarity=0.196  Sum_probs=32.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  343 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~  343 (725)
                      ++|.|+|+|..|.+.+..|...|++|+++|.+++.
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~   47 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDA   47 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            68999999999999999999999999999987654

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=93.97  E-value=0.27  Score=57.57  Aligned_cols=95  Identities=14%  Similarity=0.121  Sum_probs=61.0

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc--ccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--SEF  385 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~l  385 (725)
                      -++|-|+|.|.+|..+|+.|.+.|++++++|.|+++++.+.+.     ...+-.|..+..            +-+  ..+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~------------~~L~~agi  462 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF-----GMKVFYGDATRM------------DLLESAGA  462 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc-----CCeEEEEeCCCH------------HHHHhcCC
Confidence            3689999999999999999999999999999999998876421     000001111100            001  346


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEE
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  420 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~  420 (725)
                      .++|+||.++.++... ..+...+.+..+.-.|++
T Consensus       463 ~~A~~vvv~~~d~~~n-~~i~~~ar~~~p~~~iia  496 (621)
T PRK03562        463 AKAEVLINAIDDPQTS-LQLVELVKEHFPHLQIIA  496 (621)
T ss_pred             CcCCEEEEEeCCHHHH-HHHHHHHHHhCCCCeEEE
Confidence            7899999998654433 334444444444444554

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=93.96  E-value=0.84  Score=45.54  Aligned_cols=131  Identities=23%  Similarity=0.235  Sum_probs=79.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCh-HHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS-EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~-e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      ++|.|||.|..|..=+..|++.|.+|+++..+. +.+..           +...+.+..         +.-.-+.+.+.+
T Consensus        13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~-----------~~~~~~i~~---------~~~~~~~~~~~~   72 (210)
T COG1648          13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKA-----------LIEEGKIKW---------IEREFDAEDLDD   72 (210)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHH-----------HHHhcCcch---------hhcccChhhhcC
Confidence            589999999999999999999999999998776 22222           223332221         111222355677


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCC--CCCCeeeEecCCCCC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTERTS  465 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~--~~~~lveii~~~~t~  465 (725)
                      +++||.|+. |..+.+.+++...+.    .+++ |...-           |..   ++|+.|.  ...++.-.+.+.+.+
T Consensus        73 ~~lviaAt~-d~~ln~~i~~~a~~~----~i~v-Nv~D~-----------p~~---~~f~~Pa~~~r~~l~iaIsT~G~s  132 (210)
T COG1648          73 AFLVIAATD-DEELNERIAKAARER----RILV-NVVDD-----------PEL---CDFIFPAIVDRGPLQIAISTGGKS  132 (210)
T ss_pred             ceEEEEeCC-CHHHHHHHHHHHHHh----CCce-eccCC-----------ccc---CceecceeeccCCeEEEEECCCCC
Confidence            999998875 677777776655443    2332 22211           111   2333343  333555566666677


Q ss_pred             HHHHHHHHHHHHHc
Q 004891          466 AQVILDLMTVGKII  479 (725)
Q Consensus       466 ~e~~~~~~~l~~~l  479 (725)
                      |.....++.-.+.+
T Consensus       133 P~la~~ir~~Ie~~  146 (210)
T COG1648         133 PVLARLLREKIEAL  146 (210)
T ss_pred             hHHHHHHHHHHHHH
Confidence            77777776666553

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=93.93  E-value=0.28  Score=55.77  Aligned_cols=166  Identities=16%  Similarity=0.131  Sum_probs=99.2

Q ss_pred             EeCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhh
Q 004891           19 TLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIED   96 (725)
Q Consensus        19 ~l~~p~~--Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   96 (725)
                      .=|+|..  -+++++-.....+.+..++. -++-.|.|.-. +.|..|-+-          +.........+++ .++.+
T Consensus       299 ian~~~~~~G~~~~~~a~K~arfi~lcd~-~~iPlv~l~dt-pGf~~g~~~----------E~~g~~~~ga~~~-~a~~~  365 (493)
T PF01039_consen  299 IANNPRQRAGALDPDGARKAARFIRLCDA-FNIPLVTLVDT-PGFMPGPEA----------ERAGIIRAGARLL-YALAE  365 (493)
T ss_dssp             EEE-TTCGGGEB-HHHHHHHHHHHHHHHH-TT--EEEEEEE-CEB--SHHH----------HHTTHHHHHHHHH-HHHHH
T ss_pred             EEeccccccccCChHHHHHHHHHHHHHHh-hCCceEEEeec-ccccccchh----------hhcchHHHHHHHH-HHHHc
Confidence            3356643  37999999999999988886 36777777533 234443221          1223345566777 77999


Q ss_pred             CCCcEEEEEcccccchhhHHhhhc----CEEEeeCCceEeCcccccCCCCCchhhchHhhhh-------C--HHH-HHHH
Q 004891           97 CKKPIVAAVEGLALGGGLELAMGC----HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV-------G--LSK-AIEM  162 (725)
Q Consensus        97 ~~kp~Iaav~G~a~GgG~~lalac----D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~v-------G--~~~-a~~l  162 (725)
                      +..|+|..|-|.++|||..-+..+    |+++|.++++++       ++++.+.+..+.+.-       |  ... ..++
T Consensus       366 ~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~-------vm~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~  438 (493)
T PF01039_consen  366 ATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIG-------VMGPEGAASILYRDELEAAEAEGADPEAQRAEK  438 (493)
T ss_dssp             H-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEE-------SS-HHHHHHHHTHHHHHHSCHCCHSHHHHHHHH
T ss_pred             CCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceee-------ecChhhhheeeehhhhhhhhcccchhHHHHHHH
Confidence            999999999999999887555555    788777776665       444444433332221       0  000 1111


Q ss_pred             HH--cCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcC
Q 004891          163 ML--LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR  204 (725)
Q Consensus       163 ~l--~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~  204 (725)
                      +-  .-+..++..+...|++|.|+++.+...........+.+++
T Consensus       439 ~~~~~~~~~~~~~~a~~~~~D~ii~p~~tR~~l~~~l~~~~~~~  482 (493)
T PF01039_consen  439 IAEYEDELSSPYRAASRGYVDDIIDPAETRKVLIAALEMLWQKP  482 (493)
T ss_dssp             HHHHHHHHSSHHHHHHTTSSSEESSGGGHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHhcCCHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHhCc
Confidence            11  1122588999999999999999998777776665554443

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=93.86  E-value=0.39  Score=50.78  Aligned_cols=147  Identities=22%  Similarity=0.244  Sum_probs=79.8

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCc---EEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccc
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIY---VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~---V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (725)
                      .||||+|+ |..|.-+...|.+..+.   +.++-.....=++..+          -.++        ...-.....+...
T Consensus         2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~----------f~~~--------~~~v~~~~~~~~~   63 (334)
T COG0136           2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIE----------FGGK--------SIGVPEDAADEFV   63 (334)
T ss_pred             cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCcccc----------ccCc--------cccCccccccccc
Confidence            58999988 99999999999997553   3444333222111000          0000        0000111133456


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCee---eEecC
Q 004891          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLL---EIVRT  461 (725)
Q Consensus       385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lv---eii~~  461 (725)
                      .+++|+|+.|.+.+..  +++..++.   ..++++++|+|.+.+..-...+        +...||-++...-   -|+.+
T Consensus        64 ~~~~Divf~~ag~~~s--~~~~p~~~---~~G~~VIdnsSa~Rm~~DVPLV--------VPeVN~~~l~~~~~rg~Iian  130 (334)
T COG0136          64 FSDVDIVFFAAGGSVS--KEVEPKAA---EAGCVVIDNSSAFRMDPDVPLV--------VPEVNPEHLIDYQKRGFIIAN  130 (334)
T ss_pred             cccCCEEEEeCchHHH--HHHHHHHH---HcCCEEEeCCcccccCCCCCEe--------cCCcCHHHHHhhhhCCCEEEC
Confidence            6799999999984444  55555554   4689999999987654221111        1111211111000   13433


Q ss_pred             C-CCCHHHHHHHHHHHHHcCCeeEEE
Q 004891          462 E-RTSAQVILDLMTVGKIIKKVPVVV  486 (725)
Q Consensus       462 ~-~t~~e~~~~~~~l~~~lGk~~v~v  486 (725)
                      + .+....+-.+.++.+..|-.-+.+
T Consensus       131 pNCst~~l~~aL~PL~~~~~i~~v~V  156 (334)
T COG0136         131 PNCSTIQLVLALKPLHDAFGIKRVVV  156 (334)
T ss_pred             CChHHHHHHHHHHHHHhhcCceEEEE
Confidence            3 345566677778888777544443

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=93.84  E-value=0.21  Score=54.17  Aligned_cols=40  Identities=23%  Similarity=0.232  Sum_probs=35.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHH
Q 004891          310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK  349 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~  349 (725)
                      +|.|+|+|.||.-.++.+...|. +|++.|+++++++.+++
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~  211 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE  211 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence            79999999999998888888886 78888999999988754

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=93.80  E-value=0.12  Score=49.18  Aligned_cols=73  Identities=19%  Similarity=0.257  Sum_probs=48.1

Q ss_pred             ceEEEEcCC-CCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G-~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      ++|.|||-+ ..|.+++..|.+.|..|++.+...+.++                                     +.++.
T Consensus        37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~-------------------------------------~~~~~   79 (160)
T PF02882_consen   37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQ-------------------------------------EITRR   79 (160)
T ss_dssp             -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHH-------------------------------------HHHTT
T ss_pred             CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccc-------------------------------------ceeee
Confidence            689999996 6899999999999999999887643322                                     24578


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~  425 (725)
                      ||+||.++.-.--++       .+.+++++++++....
T Consensus        80 ADIVVsa~G~~~~i~-------~~~ik~gavVIDvG~~  110 (160)
T PF02882_consen   80 ADIVVSAVGKPNLIK-------ADWIKPGAVVIDVGIN  110 (160)
T ss_dssp             SSEEEE-SSSTT-B--------GGGS-TTEEEEE--CE
T ss_pred             ccEEeeeeccccccc-------cccccCCcEEEecCCc
Confidence            999999996433332       2357899998865443

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=93.78  E-value=0.44  Score=47.85  Aligned_cols=131  Identities=21%  Similarity=0.227  Sum_probs=74.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChH-HHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e-~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      ++|.|||+|.++..=+..|++.|.+|+++..+-. .+..           +...+.++         .+.-.-+.+.+.+
T Consensus        26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~-----------l~~~~~i~---------~~~r~~~~~dl~g   85 (223)
T PRK05562         26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLD-----------LKKYGNLK---------LIKGNYDKEFIKD   85 (223)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHH-----------HHhCCCEE---------EEeCCCChHHhCC
Confidence            4899999999999999999999999999966532 1111           12223221         0110112256789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCC--CCCCeeeEecCCCCC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTERTS  465 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~--~~~~lveii~~~~t~  465 (725)
                      +++||.|. +|.++-+.+...    +....+++.+......               ..|+.|.  ..+++.-.+.+.+.+
T Consensus        86 ~~LViaAT-dD~~vN~~I~~~----a~~~~~lvn~vd~p~~---------------~dFi~PAiv~rg~l~IaIST~G~s  145 (223)
T PRK05562         86 KHLIVIAT-DDEKLNNKIRKH----CDRLYKLYIDCSDYKK---------------GLCIIPYQRSTKNFVFALNTKGGS  145 (223)
T ss_pred             CcEEEECC-CCHHHHHHHHHH----HHHcCCeEEEcCCccc---------------CeEEeeeEEecCCEEEEEECCCcC
Confidence            99999886 466666555543    3332233222221110               1233343  333455556666667


Q ss_pred             HHHHHHHHHHHHHc
Q 004891          466 AQVILDLMTVGKII  479 (725)
Q Consensus       466 ~e~~~~~~~l~~~l  479 (725)
                      |.....++.-++.+
T Consensus       146 P~lar~lR~~ie~~  159 (223)
T PRK05562        146 PKTSVFIGEKVKNF  159 (223)
T ss_pred             cHHHHHHHHHHHHH
Confidence            77766666665543

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=93.78  E-value=0.15  Score=53.05  Aligned_cols=40  Identities=20%  Similarity=0.014  Sum_probs=35.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~  348 (725)
                      +++.|+|+|-.+.+++..|++.|. +|++++|++++.+...
T Consensus       123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la  163 (272)
T PRK12550        123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALA  163 (272)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence            479999999999999999999998 5999999998776543

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.73  E-value=0.32  Score=55.09  Aligned_cols=37  Identities=30%  Similarity=0.283  Sum_probs=33.3

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHH
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  343 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~  343 (725)
                      ..+||.|+|+|..|.++|..|.+.|++|+++|++...
T Consensus        14 ~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~   50 (473)
T PRK00141         14 LSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETA   50 (473)
T ss_pred             cCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHH
Confidence            4578999999999999999999999999999987543

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.68  E-value=0.15  Score=52.98  Aligned_cols=71  Identities=15%  Similarity=0.178  Sum_probs=52.9

Q ss_pred             ceEEEEcCC-CCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G-~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      ++|.|||-| ..|.++|..|.+.|..|+++......+.                                     +.+++
T Consensus       158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~-------------------------------------~~~~~  200 (285)
T PRK14191        158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLS-------------------------------------FYTQN  200 (285)
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHH-------------------------------------HHHHh
Confidence            689999998 9999999999999999999865432211                                     24577


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (725)
                      ||+||.|+.-.--++.       +++++++++++..
T Consensus       201 ADIvV~AvG~p~~i~~-------~~vk~GavVIDvG  229 (285)
T PRK14191        201 ADIVCVGVGKPDLIKA-------SMVKKGAVVVDIG  229 (285)
T ss_pred             CCEEEEecCCCCcCCH-------HHcCCCcEEEEee
Confidence            9999999963333322       3468999887644

>PRK12828 short chain dehydrogenase; Provisional

Probab=93.67  E-value=0.12  Score=52.16  Aligned_cols=39  Identities=26%  Similarity=0.264  Sum_probs=34.0

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~  347 (725)
                      ++|.|+|+ |.+|..++..|++.|++|++.+++++.....
T Consensus         8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~   47 (239)
T PRK12828          8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQT   47 (239)
T ss_pred             CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHH
Confidence            57889987 9999999999999999999999998765443

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=93.59  E-value=0.12  Score=52.52  Aligned_cols=33  Identities=24%  Similarity=0.288  Sum_probs=29.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCh
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~  341 (725)
                      .||.|||+|.+|+.+|..|++.|. +++++|.+.
T Consensus        22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            589999999999999999999998 788887653

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=93.54  E-value=0.17  Score=51.21  Aligned_cols=31  Identities=29%  Similarity=0.248  Sum_probs=28.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEE-EEeC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVV-LKEV  339 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~-~~d~  339 (725)
                      ++|+|.|.|.+|..+|..|.+.|.+|+ +.|.
T Consensus        32 ~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~   63 (227)
T cd01076          32 ARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS   63 (227)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            689999999999999999999999998 7777

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK06194 hypothetical protein; Provisional

Probab=93.40  E-value=0.38  Score=50.32  Aligned_cols=41  Identities=17%  Similarity=0.265  Sum_probs=35.2

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~  349 (725)
                      ++|.|.|+ |.+|..+|..|++.|++|+++|++.+.++...+
T Consensus         7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~   48 (287)
T PRK06194          7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVA   48 (287)
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH
Confidence            57888876 899999999999999999999999887666544

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=93.38  E-value=0.22  Score=52.43  Aligned_cols=90  Identities=23%  Similarity=0.266  Sum_probs=62.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  388 (725)
                      +++.|.|.|..|.++|..+...|.+|++++++|-.+-++.                        ++..+...-.+++..+
T Consensus       210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~------------------------MdGf~V~~m~~Aa~~g  265 (420)
T COG0499         210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAA------------------------MDGFRVMTMEEAAKTG  265 (420)
T ss_pred             ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHh------------------------hcCcEEEEhHHhhhcC
Confidence            5677889999999999999999999999999986533321                        1233333333677889


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 004891          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID  427 (725)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~  427 (725)
                      |++|.|....--+..+-+    ..++.++|++ |...+.
T Consensus       266 DifiT~TGnkdVi~~eh~----~~MkDgaIl~-N~GHFd  299 (420)
T COG0499         266 DIFVTATGNKDVIRKEHF----EKMKDGAILA-NAGHFD  299 (420)
T ss_pred             CEEEEccCCcCccCHHHH----HhccCCeEEe-cccccc
Confidence            999999864444433333    3467788775 554333

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=93.36  E-value=0.22  Score=46.24  Aligned_cols=72  Identities=18%  Similarity=0.236  Sum_probs=53.8

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      ++|.|+|- ...|.++|..|.+.|..|++.+.+...++                                     +.+++
T Consensus        29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~-------------------------------------~~v~~   71 (140)
T cd05212          29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQ-------------------------------------SKVHD   71 (140)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHH-------------------------------------HHHhh
Confidence            68999998 66799999999999999999986532211                                     24678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  424 (725)
                      ||+||.++.-..-++.       +.+++++++++...
T Consensus        72 ADIVvsAtg~~~~i~~-------~~ikpGa~Vidvg~  101 (140)
T cd05212          72 ADVVVVGSPKPEKVPT-------EWIKPGATVINCSP  101 (140)
T ss_pred             CCEEEEecCCCCccCH-------HHcCCCCEEEEcCC
Confidence            9999999974433332       34789999875443

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK07326 short chain dehydrogenase; Provisional

Probab=93.35  E-value=0.16  Score=51.35  Aligned_cols=40  Identities=20%  Similarity=0.262  Sum_probs=34.8

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~  348 (725)
                      ++|.|+|+ |.+|..++..|++.|++|++.+++++..+...
T Consensus         7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~   47 (237)
T PRK07326          7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAA   47 (237)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHH
Confidence            57888886 99999999999999999999999987765543

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=93.27  E-value=0.061  Score=58.98  Aligned_cols=32  Identities=22%  Similarity=0.287  Sum_probs=30.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN  340 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~  340 (725)
                      .||.|||+|..|+.++..|++.|. +++++|.+
T Consensus       136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            479999999999999999999998 79999987

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=93.24  E-value=0.072  Score=58.06  Aligned_cols=32  Identities=22%  Similarity=0.335  Sum_probs=29.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN  340 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~  340 (725)
                      .+|.|||+|.+|+.++..|++.|. +++++|.+
T Consensus        42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            479999999999999999999997 89999987

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.20  E-value=0.24  Score=56.30  Aligned_cols=47  Identities=21%  Similarity=0.174  Sum_probs=36.7

Q ss_pred             CCCCCCCCCCCCCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChH
Q 004891          295 VPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (725)
Q Consensus       295 ~~~~~~~~~~~~~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e  342 (725)
                      .|+...++.. ..-++|.|||+|..|.++|..|++.|++|+++|.++.
T Consensus         4 ~~~~~~~~~~-~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~   50 (480)
T PRK01438          4 PPGLTSWHSD-WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD   50 (480)
T ss_pred             ccchhhcccC-cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            3444444432 2346899999999999999999999999999997653

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=93.12  E-value=0.44  Score=54.45  Aligned_cols=41  Identities=15%  Similarity=0.060  Sum_probs=35.4

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~  349 (725)
                      ++|.|.|+ |.+|..++..|++.|++|++++|+.+.++...+
T Consensus        81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~  122 (576)
T PLN03209         81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQ  122 (576)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence            46778887 999999999999999999999999988765543

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.08  E-value=0.85  Score=51.31  Aligned_cols=34  Identities=26%  Similarity=0.337  Sum_probs=32.0

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCh
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (725)
                      -++|.|+|+|.+|.++|..|++.|++|+++|++.
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3689999999999999999999999999999985

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=93.06  E-value=0.067  Score=58.06  Aligned_cols=33  Identities=27%  Similarity=0.313  Sum_probs=30.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCh
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~  341 (725)
                      .||.|||+|..|+.++..|++.|. +++++|.+.
T Consensus        29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            589999999999999999999998 788999774

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.02  E-value=0.27  Score=50.96  Aligned_cols=73  Identities=15%  Similarity=0.236  Sum_probs=54.9

Q ss_pred             ceEEEEcCC-CCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G-~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      ++|.|||-+ ..|.++|..|...|..|+.+..+...+.                                     +.+++
T Consensus       153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~-------------------------------------~~~~~  195 (279)
T PRK14178        153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLK-------------------------------------AELRQ  195 (279)
T ss_pred             CEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHH-------------------------------------HHHhh
Confidence            689999998 8999999999999999999987654322                                     24578


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~  425 (725)
                      ||+||-+++-..-++.+       .++++++|++....
T Consensus       196 ADIvI~Avgk~~lv~~~-------~vk~GavVIDVgi~  226 (279)
T PRK14178        196 ADILVSAAGKAGFITPD-------MVKPGATVIDVGIN  226 (279)
T ss_pred             CCEEEECCCcccccCHH-------HcCCCcEEEEeecc
Confidence            99999999733223222       36899998865543

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=92.96  E-value=0.18  Score=51.81  Aligned_cols=33  Identities=18%  Similarity=0.318  Sum_probs=29.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCh
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~  341 (725)
                      .||.|||+|..|+.+|..|++.|. +++++|.+.
T Consensus        33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   66 (245)
T PRK05690         33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT   66 (245)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            589999999999999999999998 788988753

>PRK08223 hypothetical protein; Validated

Probab=92.92  E-value=0.28  Score=51.09  Aligned_cols=33  Identities=18%  Similarity=0.163  Sum_probs=30.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCh
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~  341 (725)
                      .||.|||+|-+|+.+|..|+++|. +++++|-+.
T Consensus        28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~   61 (287)
T PRK08223         28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV   61 (287)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            479999999999999999999998 788998764

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.85  E-value=0.27  Score=51.20  Aligned_cols=71  Identities=15%  Similarity=0.182  Sum_probs=53.0

Q ss_pred             ceEEEEcCCC-CcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~-mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      ++|.|||-|. .|.++|..|.+.|..|+++......+.                                     +.+++
T Consensus       160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~-------------------------------------~~~~~  202 (285)
T PRK10792        160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLR-------------------------------------HHVRN  202 (285)
T ss_pred             CEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHH-------------------------------------HHHhh
Confidence            6899999987 999999999999999999876432211                                     34678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (725)
                      ||+||.++.-.--++.       +.+++++++++..
T Consensus       203 ADIvi~avG~p~~v~~-------~~vk~gavVIDvG  231 (285)
T PRK10792        203 ADLLVVAVGKPGFIPG-------EWIKPGAIVIDVG  231 (285)
T ss_pred             CCEEEEcCCCcccccH-------HHcCCCcEEEEcc
Confidence            9999999942222222       5678999988644

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=92.84  E-value=0.24  Score=49.75  Aligned_cols=33  Identities=24%  Similarity=0.253  Sum_probs=29.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCh
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~  341 (725)
                      ++|+|.|+|++|..+|..|.+.|. .|.+.|.+.
T Consensus        24 ~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g   57 (217)
T cd05211          24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG   57 (217)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            689999999999999999999988 556788876

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=92.82  E-value=0.23  Score=50.30  Aligned_cols=42  Identities=21%  Similarity=0.134  Sum_probs=35.9

Q ss_pred             CcceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891          307 GVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (725)
Q Consensus       307 ~~~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~  348 (725)
                      +.++|.|.|+ |.+|..++..|++.|++|++++++++..+...
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~   46 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALA   46 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHH
Confidence            3468999987 99999999999999999999999987765443

>PLN00016 RNA-binding protein; Provisional

Probab=92.81  E-value=0.28  Score=53.82  Aligned_cols=37  Identities=24%  Similarity=0.293  Sum_probs=33.4

Q ss_pred             CcceEEEE----cC-CCCcHHHHHHHHHCCCcEEEEeCChHH
Q 004891          307 GVRKVAVI----GG-GLMGSGIATAHILNNIYVVLKEVNSEY  343 (725)
Q Consensus       307 ~~~kIaVI----G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~  343 (725)
                      .++||.|+    |+ |.+|+.++..|++.||+|++++++++.
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~   92 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP   92 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence            45789999    76 999999999999999999999998765

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=92.78  E-value=0.78  Score=47.94  Aligned_cols=35  Identities=31%  Similarity=0.381  Sum_probs=32.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  343 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~  343 (725)
                      +.|-|||+|+-|+--|..++++|.+|.+|+..+.+
T Consensus         4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k   38 (439)
T COG1206           4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK   38 (439)
T ss_pred             CceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence            56899999999999999999999999999987655

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=92.77  E-value=0.25  Score=53.48  Aligned_cols=100  Identities=17%  Similarity=0.146  Sum_probs=58.1

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccc-cCc-c
Q 004891          309 RKVAVIGG-GLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY-S  383 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~  383 (725)
                      .||+|||+ |.+|..++..|.+. +++++ +++.+...-+...+    ..      +.+..     . ....+. .+. +
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~----~~------~~l~~-----~-~~~~~~~~~~~~   64 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSE----VH------PHLRG-----L-VDLNLEPIDEEE   64 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHH----hC------ccccc-----c-CCceeecCCHHH
Confidence            37999999 99999999999976 66777 55655432111110    00      00000     0 001111 122 2


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 004891          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  429 (725)
Q Consensus       384 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~  429 (725)
                      .+.++|+||.|+|..  .-.++..++.   ..++.|+++++...+.
T Consensus        65 ~~~~~DvVf~alP~~--~s~~~~~~~~---~~G~~VIDlS~~fR~~  105 (346)
T TIGR01850        65 IAEDADVVFLALPHG--VSAELAPELL---AAGVKVIDLSADFRLK  105 (346)
T ss_pred             hhcCCCEEEECCCch--HHHHHHHHHH---hCCCEEEeCChhhhcC
Confidence            335899999999944  3345444443   3678888888876543

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=92.75  E-value=0.43  Score=46.57  Aligned_cols=87  Identities=14%  Similarity=0.127  Sum_probs=57.0

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccc--cC----
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV--LD----  381 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~--~~----  381 (725)
                      ++|.|||- ...|.++|..|.+.|..|+++|++--..-.             ..+.+          +-+.+  .+    
T Consensus        63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~-------------~~~~~----------~hs~t~~~~~~~~  119 (197)
T cd01079          63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFT-------------RGESI----------RHEKHHVTDEEAM  119 (197)
T ss_pred             CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccc-------------ccccc----------ccccccccchhhH
Confidence            68999998 567999999999999999999876432100             00000          00001  11    


Q ss_pred             c-ccccCCCEEEEeccCChH-HHHHHHHHHHHhCCCCeEEEecCCC
Q 004891          382 Y-SEFKDVDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNTST  425 (725)
Q Consensus       382 ~-~~l~~aDlVIeavpe~~~-~k~~v~~~l~~~~~~~~ii~s~tS~  425 (725)
                      + +.+++||+||.|++-.-- ++.       +.+++++++++....
T Consensus       120 l~~~~~~ADIVIsAvG~~~~~i~~-------d~ik~GavVIDVGi~  158 (197)
T cd01079         120 TLDCLSQSDVVITGVPSPNYKVPT-------ELLKDGAICINFASI  158 (197)
T ss_pred             HHHHhhhCCEEEEccCCCCCccCH-------HHcCCCcEEEEcCCC
Confidence            2 467999999999973332 333       346799998875544

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>CHL00194 ycf39 Ycf39; Provisional

Probab=92.75  E-value=0.2  Score=53.51  Aligned_cols=36  Identities=22%  Similarity=0.190  Sum_probs=32.3

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYL  344 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~  344 (725)
                      +||.|+|+ |.+|+.++..|.+.|++|++.+|+.+..
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~   37 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKA   37 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHh
Confidence            37999996 9999999999999999999999987653

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=92.72  E-value=0.27  Score=51.37  Aligned_cols=90  Identities=18%  Similarity=0.194  Sum_probs=53.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHH-CCCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccc-c-
Q 004891          310 KVAVIGGGLMGSGIATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-F-  385 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~-~G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l-  385 (725)
                      ||||||+|.||...+..+.+ .+.++. ++|+++++......         .+.|            .-...++++. + 
T Consensus         3 rVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A---------~~~G------------i~~~~~~~e~ll~   61 (285)
T TIGR03215         3 KVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARA---------RELG------------VKTSAEGVDGLLA   61 (285)
T ss_pred             EEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHH---------HHCC------------CCEEECCHHHHhc
Confidence            79999999999988777765 456765 67888876321111         0112            1111223322 2 


Q ss_pred             -cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004891          386 -KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (725)
Q Consensus       386 -~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~  425 (725)
                       .+.|+|++|.|.....  +...   ..+..++.+++.++.
T Consensus        62 ~~dIDaV~iaTp~~~H~--e~a~---~al~aGk~VIdekPa   97 (285)
T TIGR03215        62 NPDIDIVFDATSAKAHA--RHAR---LLAELGKIVIDLTPA   97 (285)
T ss_pred             CCCCCEEEECCCcHHHH--HHHH---HHHHcCCEEEECCcc
Confidence             4689999999955443  3222   234456666665553

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PRK07877 hypothetical protein; Provisional

Probab=92.72  E-value=0.13  Score=60.50  Aligned_cols=32  Identities=19%  Similarity=0.374  Sum_probs=28.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCh
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNS  341 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~  341 (725)
                      .||+|||+| .|+.+|..|+++|.  +++++|.+.
T Consensus       108 ~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~  141 (722)
T PRK07877        108 LRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDT  141 (722)
T ss_pred             CCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCE
Confidence            479999999 89999999999995  889998763

>PRK07825 short chain dehydrogenase; Provisional

Probab=92.71  E-value=0.24  Score=51.47  Aligned_cols=40  Identities=20%  Similarity=0.232  Sum_probs=35.0

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~  348 (725)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus         6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~   46 (273)
T PRK07825          6 KVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETA   46 (273)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            57888887 89999999999999999999999998876543

>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]

Probab=92.68  E-value=1.6  Score=48.99  Aligned_cols=139  Identities=15%  Similarity=0.076  Sum_probs=82.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEE-EcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEE
Q 004891           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA  103 (725)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl-~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia  103 (725)
                      .-++.+-..+.+..+.+.+.++. .-+|.| .+.      |+.+.+-..    . ...+.+.+.+.  ..+... +|.|+
T Consensus       104 gGt~~~~~~~Ki~r~~~~A~~~g-~P~i~l~dsg------Gari~~~v~----~-l~g~g~iF~~~--a~~Sg~-IPqIs  168 (526)
T COG4799         104 GGTLGEMTAKKILRAQELAIENG-LPVIGLNDSG------GARIQEGVP----S-LAGYGRIFYRN--ARASGV-IPQIS  168 (526)
T ss_pred             cccccccccchHHHHHHHHHHcC-CCEEEEEccc------ccccccCcc----c-cccchHHHHHH--HHhccC-CCEEE
Confidence            57777777778888887777654 344555 333      333322100    0 11111111111  123444 99999


Q ss_pred             EEcccccchhhHHhhhcCEEEeeCCc-eEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHH-------H
Q 004891          104 AVEGLALGGGLELAMGCHARIAAPKT-QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------W  175 (725)
Q Consensus       104 av~G~a~GgG~~lalacD~~ia~~~a-~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA-------~  175 (725)
                      +|.|.|.|||..+-..||++|+.+++ ++.+.                    |+...+  ..||+.++++|.       .
T Consensus       169 vv~G~c~gGgaY~pal~D~~imv~~~~~mflt--------------------GP~~ik--~vtGe~V~~e~LGGa~vh~~  226 (526)
T COG4799         169 VVMGPCAGGGAYSPALTDFVIMVRDQSYMFLT--------------------GPPVIK--AVTGEEVSAEELGGAQVHAR  226 (526)
T ss_pred             EEEecCcccccccccccceEEEEcCCccEEee--------------------CHHHHH--hhcCcEeehhhccchhhhcc
Confidence            99999999999999999999999884 22211                    222221  246777777653       3


Q ss_pred             HcCCcceecCcchHHHHHHHHHHHHHhc
Q 004891          176 KLGLIDAVVTSEELLKVSRLWALDIAAR  203 (725)
Q Consensus       176 ~~Glv~~vv~~~~l~~~a~~~a~~la~~  203 (725)
                      ..|.+|.+.+.|   ..|.++++++.+.
T Consensus       227 ~sGva~~~a~dd---~~Ai~~vr~~lsy  251 (526)
T COG4799         227 KSGVADLLAEDD---EDAIELVRRLLSY  251 (526)
T ss_pred             cccceeeeecCH---HHHHHHHHHHHHh
Confidence            458888887544   4566666665544

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=92.65  E-value=0.34  Score=53.60  Aligned_cols=164  Identities=13%  Similarity=0.051  Sum_probs=80.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC------cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcC------cc
Q 004891          310 KVAVIGGGLMGSGIATAHILNNI------YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKM------LK  377 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~------~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~------i~  377 (725)
                      ||.|||+|.+|..++..|+..|.      +++++|.+.-......   ++-+-+...-|.-..+.+.+.+..      +.
T Consensus         1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLn---RQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~   77 (435)
T cd01490           1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLN---RQFLFRPHDVGKPKSEVAAAAVKAMNPDLKIT   77 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccC---cCccCChhHcCcHHHHHHHHHHHHHCCCCEEE
Confidence            58999999999999999999998      8999997642211100   000000001111111111111110      11


Q ss_pred             ccc-------C----cccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEec
Q 004891          378 GVL-------D----YSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHF  446 (725)
Q Consensus       378 ~~~-------~----~~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~  446 (725)
                      ...       .    .+-+++.|+||.|+- +.+....+-+.....-  -.+|-+.+.+..- ...-..+.....-....
T Consensus        78 a~~~~v~~~~~~~~~~~f~~~~DvVi~alD-n~~aR~~vn~~C~~~~--iPli~~gt~G~~G-~v~v~iP~~te~y~~~~  153 (435)
T cd01490          78 ALQNRVGPETEHIFNDEFWEKLDGVANALD-NVDARMYVDRRCVYYR--KPLLESGTLGTKG-NTQVVIPHLTESYSSSR  153 (435)
T ss_pred             EEecccChhhhhhhhHHHhcCCCEEEECCC-CHHHHHHHHHHHHHhC--CCEEEEeccccee-EEEEEeCCCCCCccCCC
Confidence            000       0    123577999999873 4554433333222221  1133333332211 11111111111112222


Q ss_pred             CCCCCCCCeeeEecCCCCCHHHHHHHHHHHHHcC
Q 004891          447 FSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK  480 (725)
Q Consensus       447 ~~p~~~~~lveii~~~~t~~e~~~~~~~l~~~lG  480 (725)
                      ..|....|..++-.-+...+..++.++.+++.+-
T Consensus       154 ~p~~~~~P~Ctl~~~P~~~eHcI~wA~~~F~~lF  187 (435)
T cd01490         154 DPPEKSIPLCTLKNFPNAIEHTIQWARDEFEGLF  187 (435)
T ss_pred             CCCCCCCCCccccCCCCCchHHHHHHHHHHHHHh
Confidence            2233445667777777888899999999998754

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=92.63  E-value=0.25  Score=50.14  Aligned_cols=33  Identities=30%  Similarity=0.326  Sum_probs=30.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCh
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~  341 (725)
                      .||.|+|+|.+|+.++..|++.|. +++++|.+.
T Consensus        12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~   45 (231)
T cd00755          12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV   45 (231)
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            479999999999999999999998 899999764

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=92.61  E-value=0.18  Score=51.55  Aligned_cols=34  Identities=15%  Similarity=0.292  Sum_probs=30.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE  342 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e  342 (725)
                      .||.|+|+|.+|+.+|..|++.|. +++++|.+.-
T Consensus        25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v   59 (240)
T TIGR02355        25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV   59 (240)
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence            579999999999999999999997 7888887643

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=92.57  E-value=0.098  Score=58.15  Aligned_cols=33  Identities=21%  Similarity=0.251  Sum_probs=31.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChH
Q 004891          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e  342 (725)
                      +|.|||+|.+|.++|..|++.|++|+++|++..
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~   34 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG   34 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence            799999999999999999999999999999753

>PRK07831 short chain dehydrogenase; Provisional

Probab=92.54  E-value=0.29  Score=50.55  Aligned_cols=44  Identities=20%  Similarity=0.261  Sum_probs=36.8

Q ss_pred             cceEEEEcC-C-CCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHH
Q 004891          308 VRKVAVIGG-G-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (725)
Q Consensus       308 ~~kIaVIG~-G-~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i  351 (725)
                      -+++.|.|+ | .+|.+++..|++.|++|++.+++++.++...+.+
T Consensus        17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~   62 (262)
T PRK07831         17 GKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADEL   62 (262)
T ss_pred             CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence            367889997 6 5999999999999999999999988776655443

>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A

Probab=92.50  E-value=0.3  Score=43.98  Aligned_cols=53  Identities=8%  Similarity=0.016  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHh-h-hhhcCCC
Q 004891          244 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFA-Q-RATSKVP  296 (725)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~-~-r~~~~~~  296 (725)
                      ...+.+.++.+...++++.++.|...-..++..+|+.|||++-+- | +.|+++|
T Consensus        48 l~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~~~DF~EGVRA~LIDKd~~P~W~p  102 (118)
T PF13766_consen   48 LKVTFEQLRRGRNLSLAECLRMEYRLASRCMRHPDFAEGVRALLIDKDKNPKWSP  102 (118)
T ss_dssp             HHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHCCSCHHHHHHHHTTS-------SS
T ss_pred             HHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCCCCC
Confidence            356678899999999999999999999999999999999999876 3 4565555

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.47  E-value=0.61  Score=47.16  Aligned_cols=40  Identities=25%  Similarity=0.267  Sum_probs=35.1

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~  348 (725)
                      ++|.|.|+ |.+|..+++.|++.|++|++.+++++.++...
T Consensus         6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~   46 (238)
T PRK05786          6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMK   46 (238)
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            57889987 88999999999999999999999988766543

>PRK05866 short chain dehydrogenase; Provisional

Probab=92.46  E-value=0.23  Score=52.43  Aligned_cols=41  Identities=15%  Similarity=0.154  Sum_probs=35.5

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~  349 (725)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus        41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~   82 (293)
T PRK05866         41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVAD   82 (293)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            57888887 999999999999999999999999887765543

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=92.41  E-value=0.3  Score=52.63  Aligned_cols=73  Identities=21%  Similarity=0.209  Sum_probs=48.9

Q ss_pred             CcceEEEEcCCCC-cHHHHHHHHHCCC---cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc
Q 004891          307 GVRKVAVIGGGLM-GSGIATAHILNNI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (725)
Q Consensus       307 ~~~kIaVIG~G~m-G~~iA~~l~~~G~---~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (725)
                      .+.||||||+|.+ +...+..+.+.+.   -|.++|+++++++...+.+          +            .-...+++
T Consensus         2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~----------~------------~~~~~~~~   59 (342)
T COG0673           2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEF----------G------------IAKAYTDL   59 (342)
T ss_pred             CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHc----------C------------CCcccCCH
Confidence            3578999999854 4567778877663   4668899999977654321          1            11234555


Q ss_pred             -cccc--CCCEEEEeccCChHH
Q 004891          383 -SEFK--DVDMVIEAVIESVPL  401 (725)
Q Consensus       383 -~~l~--~aDlVIeavpe~~~~  401 (725)
                       +.++  +.|+|++|+|.+...
T Consensus        60 ~~ll~~~~iD~V~Iatp~~~H~   81 (342)
T COG0673          60 EELLADPDIDAVYIATPNALHA   81 (342)
T ss_pred             HHHhcCCCCCEEEEcCCChhhH
Confidence             3343  479999999976665

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.41  E-value=0.32  Score=50.64  Aligned_cols=73  Identities=16%  Similarity=0.155  Sum_probs=53.1

Q ss_pred             ceEEEEcCCC-CcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~-mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      ++|.|||-+. .|.++|..|.+.|..|++++.....+.                                     +.+++
T Consensus       165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~-------------------------------------~~~~~  207 (287)
T PRK14176        165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLK-------------------------------------KYTLD  207 (287)
T ss_pred             CEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHH-------------------------------------HHHhh
Confidence            6899999987 999999999999999999885322111                                     34578


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~  425 (725)
                      ||+||.|+.-.--++       ...+++++++++..+.
T Consensus       208 ADIvv~AvG~p~~i~-------~~~vk~gavVIDvGin  238 (287)
T PRK14176        208 ADILVVATGVKHLIK-------ADMVKEGAVIFDVGIT  238 (287)
T ss_pred             CCEEEEccCCccccC-------HHHcCCCcEEEEeccc
Confidence            999999875222222       2357899998875543

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=92.37  E-value=0.16  Score=55.49  Aligned_cols=102  Identities=16%  Similarity=0.204  Sum_probs=61.1

Q ss_pred             CcceEEEEcC-CCCcHHHHHHHHHC-CCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccc
Q 004891          307 GVRKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (725)
Q Consensus       307 ~~~kIaVIG~-G~mG~~iA~~l~~~-G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (725)
                      +.+||+|+|+ |..|..+...|..+ +++|+.+..+...-+...+    .... +..+...         .+. ..+.+.
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~----~~~~-l~~~~~~---------~~~-~~~~~~  101 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGS----VFPH-LITQDLP---------NLV-AVKDAD  101 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchh----hCcc-ccCcccc---------cee-cCCHHH
Confidence            4569999999 99999999999988 7799988775433211110    0000 0000000         000 011133


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 004891          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  429 (725)
Q Consensus       385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~  429 (725)
                      ++++|+||.|+|.  ..-.++...+    ..++.|+++++.....
T Consensus       102 ~~~~DvVf~Alp~--~~s~~i~~~~----~~g~~VIDlSs~fRl~  140 (381)
T PLN02968        102 FSDVDAVFCCLPH--GTTQEIIKAL----PKDLKIVDLSADFRLR  140 (381)
T ss_pred             hcCCCEEEEcCCH--HHHHHHHHHH----hCCCEEEEcCchhccC
Confidence            5889999999984  3434444443    4578888888866544

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=92.36  E-value=0.26  Score=50.77  Aligned_cols=41  Identities=27%  Similarity=0.291  Sum_probs=35.4

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHH
Q 004891          310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  350 (725)
Q Consensus       310 kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~  350 (725)
                      +|.|.|+ |.+|.++|..|++.|++|++.+++++.++...+.
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~   43 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKE   43 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence            6788887 8899999999999999999999998887665443

>PRK07774 short chain dehydrogenase; Provisional

Probab=92.34  E-value=0.24  Score=50.55  Aligned_cols=39  Identities=26%  Similarity=0.290  Sum_probs=34.3

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~  347 (725)
                      ++|.|.|+ |.+|..++..|++.|++|++.+++++..+..
T Consensus         7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~   46 (250)
T PRK07774          7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERV   46 (250)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            57888887 9999999999999999999999998765554

>PRK05868 hypothetical protein; Validated

Probab=92.27  E-value=0.1  Score=57.23  Aligned_cols=36  Identities=19%  Similarity=0.188  Sum_probs=33.1

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHH
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  343 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~  343 (725)
                      |++|.|||+|.-|.+.|..|++.|++|+++|++++.
T Consensus         1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~   36 (372)
T PRK05868          1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL   36 (372)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence            578999999999999999999999999999988653

>PRK07454 short chain dehydrogenase; Provisional

Probab=92.26  E-value=0.27  Score=49.93  Aligned_cols=41  Identities=15%  Similarity=0.113  Sum_probs=35.2

Q ss_pred             CcceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 004891          307 GVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (725)
Q Consensus       307 ~~~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~  347 (725)
                      .++++.|.|+ |.+|..++..|++.|++|++.+++++..+..
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~   46 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEAL   46 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            3567888886 9999999999999999999999998765543

>PRK08267 short chain dehydrogenase; Provisional

Probab=92.26  E-value=0.19  Score=51.72  Aligned_cols=40  Identities=15%  Similarity=0.133  Sum_probs=35.1

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 004891          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (725)
Q Consensus       308 ~~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~  347 (725)
                      |++|.|+|+ |.+|..++..|++.|++|++++++++.++..
T Consensus         1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~   41 (260)
T PRK08267          1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAAL   41 (260)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence            467889986 9999999999999999999999998876654

>PRK08328 hypothetical protein; Provisional

Probab=92.17  E-value=0.12  Score=52.43  Aligned_cols=34  Identities=29%  Similarity=0.380  Sum_probs=30.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE  342 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e  342 (725)
                      .||.|||+|-.|+.+|..|++.|. +++++|.+.-
T Consensus        28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v   62 (231)
T PRK08328         28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP   62 (231)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence            479999999999999999999998 7899997643

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.17  E-value=0.37  Score=49.10  Aligned_cols=40  Identities=25%  Similarity=0.282  Sum_probs=35.1

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~  348 (725)
                      ++|.|+|+ |.+|..++..|++.|++|++.+++++..+...
T Consensus         6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~   46 (251)
T PRK07231          6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVA   46 (251)
T ss_pred             cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            57899987 99999999999999999999999987765543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	725
2wtb_A	725	Arabidopsis Thaliana Multifuctional Protein, Mfp2 L		0.0
3zw8_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		2e-89
2x58_A	727	The Crystal Structure Of Mfe1 Liganded With Coa Len		2e-89
3zwb_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		9e-89
1wdk_A	715	Fatty Acid Beta-Oxidation Multienzyme Complex From		2e-78
1zcj_A	463	Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenas		7e-55
3k6j_A	460	Crystal Structure Of The Dehydrogenase Part Of Mult		4e-44
3mog_A	483	Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydroge		4e-40
3had_A	308	Biochemical Characterization And Structure Determin		3e-32
1f0y_A	302	L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Ac		3e-32
3hdh_A	302	Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydroge		4e-32
1f12_A	310	L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-		5e-32
1lso_A	302	Crystal Structure Of The S137a Mutant Of L-3-Hydrox		8e-32
1lsj_A	302	Crystal Structure Of The E110q Mutant Of L-3-hydrox		8e-32
1il0_A	302	X-Ray Crystal Structure Of The E170q Mutant Of Huma		8e-32
1m76_A	302	Crystal Structure Of The S137c Mutant Of L-3-Hydrox		1e-31
1m75_A	302	Crystal Structure Of The N208s Mutant Of L-3-Hydrox		2e-31
3pea_A	261	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		7e-29
2hdh_A	293	Biochemical Characterization And Structure Determin		3e-24
3rqs_A	324	Crystal Structure Of Human L-3- Hydroxyacyl-Coa Deh		4e-24
3moy_A	263	Crystal Structure Of Probable Enoyl-Coa Hydratase F		8e-18
4dyd_A	283	Substrate-Directed Dual Catalysis Of Dicarbonyl Com		1e-17
1zej_A	293	Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrog		1e-16
4fzw_A	258	Crystal Structure Of The Paaf-paag Hydratase-isomer		1e-15
3h81_A	278	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		4e-15
3q0j_A	258	Crystal Structure Of The Mycobacterium Tuberculosis		4e-15
3pzk_A	257	Crystal Structure Of The Mycobacterium Tuberculosis		4e-15
1ey3_A	258	Structure Of Enoyl-Coa Hydratase Complexed With The		8e-15
1mj3_A	260	Crystal Structure Analysis Of Rat Enoyl-Coa Hydrata		9e-15
1dub_A	261	2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph		9e-15
2pbp_A	258	Crystal Structure Of Enoyl-Coa Hydrates Subunit I (		2e-14
3hrx_A	254	Crystal Structure Of Phenylacetic Acid Degradation		2e-14
3kqf_A	265	1.8 Angstrom Resolution Crystal Structure Of Enoyl-		6e-14
2hw5_A	286	The Crystal Structure Of Human Enoyl-Coenzyme A (Co		7e-14
2iex_A	272	Crystal Structure Of Dihydroxynapthoic Acid Synthet		2e-12
4di1_A	277	Crystal Structure Of Enoyl-Coa Hydratase Echa17 Fro		6e-12
3hin_A	275	Crystal Structure Of Putative Enoyl-Coa Hydratase F		4e-11
3qka_A	261	Crystal Structure Of Enoyl-Coa Hydratase Echa5 From		8e-11
3g64_A	279	Crystal Structure Of Putative Enoyl-Coa Hydratase F		1e-10
2ppy_A	265	Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) F		1e-10
1hzd_A	272	Crystal Structure Of Human Auh Protein, An Rna-Bind		1e-10
3rsi_A	265	The Structure Of A Putative Enoyl-Coa HydrataseISOM		2e-10
3t88_A	289	Crystal Structure Of Escherichia Coli Menb In Compl		2e-10
4els_A	285	Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Co		2e-10
3trr_A	256	Crystal Structure Of A Probable Enoyl-Coa Hydratase		2e-10
3p85_A	270	Crystal Structure Enoyl-Coa Hydratase From Mycobact		2e-09
3sll_A	290	Crystal Structure Of A Probable Enoyl-Coa Hydratase		2e-09
3h02_A	288	2.15 Angstrom Resolution Crystal Structure Of Napht		3e-09
2uzf_A	273	Crystal Structure Of Staphylococcus Aureus 1,4-Dihy		4e-09
3qre_A	298	Crystal Structure Of An Enoyl-Coa Hydratase Echa12_		5e-09
3qyr_A	253	Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 M		7e-09
1jxz_A	269	Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coe		1e-08
1nzy_A	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		2e-08
1nzy_B	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		2e-08
3qxz_A	265	Crystal Structure Of A Probable Enoyl-Coa Hydratase		3e-08
4fzw_C	274	Crystal Structure Of The Paaf-paag Hydratase-isomer		5e-08
3p5m_A	255	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		6e-08
3pe8_A	256	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		8e-08
2vx2_A	287	Crystal Structure Of Human Enoyl Coenzyme A Hydrata		1e-07
3q1t_A	278	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		1e-07
3qk8_A	272	Crystal Structure Of Enoyl-Coa Hydratase Echa15 Fro		2e-07
2ej5_A	257	Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydr		5e-07
4eml_A	275	Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoy		6e-07
4f47_A	278	The Structure Of Enoyl-Coa Hydratase Echa19 From My		1e-06
3r0o_A	273	Crystal Structure Of Carnitinyl-Coa Hydratase From		1e-06
3r9q_A	262	Structure Of A Probable Enoyl-Coa HydrataseISOMERAS		4e-06
3isa_A	254	Crystal Structure Of Putative Enoyl-Coa HydrataseIS		7e-06
1sg4_A	260	Crystal Structure Of Human Mitochondrial Delta3-del		7e-06
3r9t_A	267	Structure Of Echa1_1 From Mycobacterium Paratubercu		7e-06
4hc8_A	255	Crystal Structure Of Probable Enoyl-Coa Hydratase E		7e-06
3swx_A	265	Crystal Structure Of A Probable Enoyl-Coa Hydratase		9e-06
3r9s_A	267	Structure Of A Carnitinyl-Coa Dehydratase From Myco		9e-06
3qmj_A	256	Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 Fr		2e-05
2vre_A	296	Crystal Structure Of Human Peroxisomal Delta3,5, De		2e-05
1wz8_A	264	Crystal Structure Of Probable Enoyl-Coa Dehydratase		2e-05
3lke_A	263	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		5e-05
3l3s_A	263	Crystal Structure Of An Enoyl-Coa HydrotaseISOMERAS		6e-05
3f3s_A	313	The Crystal Structure Of Human Lambda-Crystallin, C		7e-05
2a7k_A	250	Carboxymethylproline Synthase (carb) From Pectobact		9e-05
3he2_A	264	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		1e-04
3oc7_A	267	Crystal Structure Of An Enoyl-Coa Hydratase From My		1e-04
3r6h_A	233	Crystal Structure Of An Enoyl-Coa Hydratase (Echa3)		1e-04
1dci_A	275	Dienoyl-Coa Isomerase Length = 275		2e-04
1uiy_A	253	Crystal Structure Of Enoyl-Coa Hydratase From Therm		2e-04
3ome_A	282	Crystal Structure Of A Probable Enoyl-Coa Hydratase		2e-04
3h0u_A	289	Crystal Structure Of A Putative Enoyl-Coa Hydratase		2e-04
2fbm_A	291	Acetyltransferase Domain Of Cdy1 Length = 291		3e-04
1ef8_A	261	Crystal Structure Of Methylmalonyl Coa Decarboxylas		3e-04
1xx4_A	261	Crystal Structure Of Rat Mitochondrial 3,2-Enoyl-Co		4e-04
3i47_A	268	Crystal Structure Of Putative Enoyl Coa HydrataseIS		4e-04
2fw2_A	260	Catalytic Domain Of Cdy Length = 260		5e-04
3bpt_A	363	Crystal Structure Of Human Beta-Hydroxyisobutyryl-C		5e-04
2vsu_C	275	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		5e-04
2vsu_A	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		5e-04
2j5i_I	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		5e-04
2vss_F	276	Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C		5e-04
2vsu_F	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		5e-04
2vss_E	276	Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C		5e-04
2j5i_B	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		5e-04
2vsu_E	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		5e-04
4hdt_A	353	Crystal Structure Of A Carnitinyl-Coa Dehydratase F		7e-04
2j5i_A	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		7e-04
3gkb_A	287	Crystal Structure Of A Putative Enoyl-coa Hydratase		7e-04

>pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2 Length = 725

Iteration: 1
 Score =  809 bits (2090), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/708 (55%), Positives = 513/708 (72%), Gaps = 6/708 (0%)
Query: 5   RVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           +  MEVG DGVA+ITLINPPVN+L+  ++  LK  +EEA SR+DVKAIV+TG  GRFSGG
Sbjct: 8   KTVMEVGGDGVAVITLINPPVNSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGRFSGG 67
Query: 65  FDINVFQKVHGAGDVSLMPD---VSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCH 121
           FDI+ F ++   G+V   P    +S++++ +L+E  +KP                 M CH
Sbjct: 68  FDISGFGEMQ-KGNVK-EPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACH 125
Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
           ARI+AP  QLGLPEL LGVIPGFGGTQRLPRLVGL+KA+EM+L SK + +EEG  LGLID
Sbjct: 126 ARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLID 185
Query: 182 AVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241
           AVV   EL+  +R WALDI  RRKPW+ S+ +TDKL  L EARE+L  A+ Q  K APNM
Sbjct: 186 AVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLGEAREILTFAKAQTLKRAPNM 245
Query: 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDI 301
                CLD IE GIV G  +G+ KEA+V  ++V LDT++GL+HVFF+QR T+KVP VTD 
Sbjct: 246 KHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVTDR 305
Query: 302 GLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTR 361
           GL PR ++KVA+IGGGLMGSGIATA IL+N  V+LKEVN ++L  GI  ++AN++  V +
Sbjct: 306 GLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRK 365
Query: 362 GKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
           G ++Q+K    + +LKG LDY  F+DVDMVIEAVIE++ LKQ+IF++LEK CP HCILA+
Sbjct: 366 GSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILAS 425
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 481
           NTSTIDLN +GE+T SQDRI+GAHFFSPAH+MPLLEIVRT  TSAQVI+DL+        
Sbjct: 426 NTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKK 485
Query: 482 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYG 541
                 NCTGFAVNR FFPY+Q+A  LV  G D + ID AI  FG+P+GPF+L DL G+G
Sbjct: 486 TPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRAISKFGMPMGPFRLCDLVGFG 545
Query: 542 VAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIE 601
           VA AT+ +F + F +R+++S ++ L+ +  R G+A  KG Y Y+   K KPDP +   IE
Sbjct: 546 VAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGFYLYDDKRKAKPDPELKKYIE 605
Query: 602 ECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSF 661
           + R +S +    K+  +++EK+I+EM  FPVVNE+CRV  EGI V+A+DLD A ++GM F
Sbjct: 606 KARSISGVKLDPKLA-NLSEKDIIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIMGMGF 664
Query: 662 PSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGI 709
           P YRGGI+FWAD++G+ Y+Y+ L +WS+ YG FFKP  FL ER +KG+
Sbjct: 665 PPYRGGIMFWADSIGSKYIYSRLDEWSKAYGEFFKPCAFLAERGSKGV 712

>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) In Apo Form Length = 742

Iteration: 1
 Score =  327 bits (837), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 224/719 (31%), Positives = 359/719 (49%), Gaps = 50/719 (6%)
Query: 15  VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVH 74
           +A+I L NPPVNA++  ++  +++  ++A S   VKAIV+ G  G F  G DI+ F    
Sbjct: 31  LAMIRLCNPPVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFS--- 87
Query: 75  GAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLP 134
                +  P +++  +V+ I+  +KP+                +GCH RIA  K ++GLP
Sbjct: 88  -----AFTPGLALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLP 142
Query: 135 ELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS---EELLK 191
           E+TLG++PG  GTQ LPR+VG+  A++++   K ++++E  +LG++DAVV S   EE +K
Sbjct: 143 EVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSDPVEEAIK 202
Query: 192 VS-RLWALDIAARR---KPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQAC 247
            + ++    I  RR   KP          + SL     V   A  + +K  P +   + C
Sbjct: 203 FAQKIIDKPIEPRRIFNKP----------VPSLPNMDSVFAEAIAKVRKQYPGVLAPETC 252
Query: 248 LDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLK--- 304
           +  I+  + H    G+ +E K+F  L     ++ L + FFA+++ +K    +    K   
Sbjct: 253 VRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSANKWSTPSGASWKTAS 312
Query: 305 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL 364
            + V  V V+G G MG GIA +     I VV  E + + L    K I   +    +R   
Sbjct: 313 AQPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAH- 371
Query: 365 TQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424
            Q+   +A   L+      E   VD+V+EAV E + LK+K+F+EL   C P   L TNTS
Sbjct: 372 -QNGQASAKPKLRFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTS 430
Query: 425 TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXX 484
            ++++ +   T     +IG HFFSPAHVM LLE++ +  +S   I  +M+          
Sbjct: 431 ALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGV 490
Query: 485 XXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVA- 543
              NC GF  NR   PY      L+  G     +D  +  FG  +GPF++ DLAG  V  
Sbjct: 491 VVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGW 550
Query: 544 ------AATSKEFDKAFPDR----SFQSPLVDLLLKSGRNGKANGKGLYTYEK--GSKPK 591
                   T        P R    S  SPL D+L ++GR G+  GKG Y Y+K  G   K
Sbjct: 551 KIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDKPLGRIHK 610
Query: 592 PDPSVLPIIEECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDL 651
           PDP +   + + R + +I        +++++EI+E  L+ ++NE+ R+LEEG+  R   +
Sbjct: 611 PDPWLSTFLSQYREVHHIEQR-----TISKEEILERCLYSLINEAFRILEEGMAARPEHI 665
Query: 652 DDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF--FKPSRFLEERATKG 708
           D   + G  +P ++GG +F+A +VG   V   L+K+ +   +    +PS +L     +G
Sbjct: 666 DVIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQG 724

>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa Length = 727

Iteration: 1
 Score =  327 bits (837), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 224/719 (31%), Positives = 359/719 (49%), Gaps = 50/719 (6%)
Query: 15  VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVH 74
           +A+I L NPPVNA++  ++  +++  ++A S   VKAIV+ G  G F  G DI+ F    
Sbjct: 16  LAMIRLCNPPVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFS--- 72
Query: 75  GAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLP 134
                +  P +++  +V+ I+  +KP+                +GCH RIA  K ++GLP
Sbjct: 73  -----AFTPGLALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLP 127
Query: 135 ELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS---EELLK 191
           E+TLG++PG  GTQ LPR+VG+  A++++   K ++++E  +LG++DAVV S   EE +K
Sbjct: 128 EVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSDPVEEAIK 187
Query: 192 VS-RLWALDIAARR---KPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQAC 247
            + ++    I  RR   KP          + SL     V   A  + +K  P +   + C
Sbjct: 188 FAQKIIDKPIEPRRIFNKP----------VPSLPNMDSVFAEAIAKVRKQYPGVLAPETC 237
Query: 248 LDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLK--- 304
           +  I+  + H    G+ +E K+F  L     ++ L + FFA+++ +K    +    K   
Sbjct: 238 VRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSANKWSTPSGASWKTAS 297
Query: 305 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL 364
            + V  V V+G G MG GIA +     I VV  E + + L    K I   +    +R   
Sbjct: 298 AQPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAH- 356
Query: 365 TQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424
            Q+   +A   L+      E   VD+V+EAV E + LK+K+F+EL   C P   L TNTS
Sbjct: 357 -QNGQASAKPKLRFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTS 415
Query: 425 TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXX 484
            ++++ +   T     +IG HFFSPAHVM LLE++ +  +S   I  +M+          
Sbjct: 416 ALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGV 475
Query: 485 XXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVA- 543
              NC GF  NR   PY      L+  G     +D  +  FG  +GPF++ DLAG  V  
Sbjct: 476 VVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGW 535
Query: 544 ------AATSKEFDKAFPDR----SFQSPLVDLLLKSGRNGKANGKGLYTYEK--GSKPK 591
                   T        P R    S  SPL D+L ++GR G+  GKG Y Y+K  G   K
Sbjct: 536 KIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDKPLGRIHK 595
Query: 592 PDPSVLPIIEECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDL 651
           PDP +   + + R + +I        +++++EI+E  L+ ++NE+ R+LEEG+  R   +
Sbjct: 596 PDPWLSTFLSQYREVHHIEQR-----TISKEEILERCLYSLINEAFRILEEGMAARPEHI 650
Query: 652 DDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF--FKPSRFLEERATKG 708
           D   + G  +P ++GG +F+A +VG   V   L+K+ +   +    +PS +L     +G
Sbjct: 651 DVIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQG 709

>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) Complexed With 2trans-hexenoyl-coa Length = 742

Iteration: 1
 Score =  324 bits (831), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 223/719 (31%), Positives = 358/719 (49%), Gaps = 50/719 (6%)
Query: 15  VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVH 74
           +A+I L NPPVNA++  ++  +++  ++A S   VKAIV+ G  G F  G DI+ F    
Sbjct: 31  LAMIRLCNPPVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFS--- 87
Query: 75  GAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLP 134
                +  P +++  +V+ I+  +KP+                +GCH RIA  K ++GLP
Sbjct: 88  -----AFTPGLALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLP 142
Query: 135 ELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS---EELLK 191
            +TLG++PG  GTQ LPR+VG+  A++++   K ++++E  +LG++DAVV S   EE +K
Sbjct: 143 AVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSDPVEEAIK 202
Query: 192 VS-RLWALDIAARR---KPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQAC 247
            + ++    I  RR   KP          + SL     V   A  + +K  P +   + C
Sbjct: 203 FAQKIIDKPIEPRRIFNKP----------VPSLPNMDSVFAEAIAKVRKQYPGVLAPETC 252
Query: 248 LDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLK--- 304
           +  I+  + H    G+ +E K+F  L     ++ L + FFA+++ +K    +    K   
Sbjct: 253 VRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSANKWSTPSGASWKTAS 312
Query: 305 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL 364
            + V  V V+G G MG GIA +     I VV  E + + L    K I   +    +R   
Sbjct: 313 AQPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAH- 371
Query: 365 TQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424
            Q+   +A   L+      E   VD+V+EAV E + LK+K+F+EL   C P   L TNTS
Sbjct: 372 -QNGQASAKPKLRFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTS 430
Query: 425 TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXX 484
            ++++ +   T     +IG HFFSPAHVM LLE++ +  +S   I  +M+          
Sbjct: 431 ALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGV 490
Query: 485 XXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVA- 543
              NC GF  NR   PY      L+  G     +D  +  FG  +GPF++ DLAG  V  
Sbjct: 491 VVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGW 550
Query: 544 ------AATSKEFDKAFPDR----SFQSPLVDLLLKSGRNGKANGKGLYTYEK--GSKPK 591
                   T        P R    S  SPL D+L ++GR G+  GKG Y Y+K  G   K
Sbjct: 551 KIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDKPLGRIHK 610
Query: 592 PDPSVLPIIEECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDL 651
           PDP +   + + R + +I        +++++EI+E  L+ ++NE+ R+LEEG+  R   +
Sbjct: 611 PDPWLSTFLSQYREVHHIEQR-----TISKEEILERCLYSLINEAFRILEEGMAARPEHI 665
Query: 652 DDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF--FKPSRFLEERATKG 708
           D   + G  +P ++GG +F+A +VG   V   L+K+ +   +    +PS +L     +G
Sbjct: 666 DVIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQG 724

>pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (Native2) Length = 715

Iteration: 1
 Score =  290 bits (742), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 203/678 (29%), Positives = 327/678 (48%), Gaps = 38/678 (5%)
Query: 49  VKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMP-DVSVELVVNLIEDCKKPIXXXXXX 107
           VK ++++     F  G DI  F +     D  L+  ++    + +  ED   P       
Sbjct: 53  VKGVIVSSGKDVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAING 112
Query: 108 XXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSK 167
                     +    R+ A   ++GLPE+ LG+ PGFGGT RLPRL+G+  A+E +   K
Sbjct: 113 IALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGK 172
Query: 168 SITSEEGWKLGLIDAVVTSE-------ELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL 220
              +E+  K+  +DAVVT++       +L+K +    LD  A+R+P +  L    KL ++
Sbjct: 173 ENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKL----KLNAI 228
Query: 221 SEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSR 280
            +           A +  PN P     +  I++    G    +  EA  F +L     S 
Sbjct: 229 EQMMAFETAKGFVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASN 288
Query: 281 GLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVN 340
            L+ +F   +   K   V D   K   V++ AV+G G+MG GIA         +++K++N
Sbjct: 289 CLIGLFLNDQELKKKAKVYDKIAKD--VKQAAVLGAGIMGGGIAYQSASKGTPILMKDIN 346
Query: 341 SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVP 400
              + +G+      + G V +G++T  K    L  ++  L Y +F +VD+V+EAV+E+  
Sbjct: 347 EHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVENPK 406
Query: 401 LKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVR 460
           +KQ + +E+E       ILA+NTSTI ++++ +     +  +G HFF+P H+MPL+E++R
Sbjct: 407 VKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIR 466
Query: 461 TERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDS 520
            E++S   +   +              +C GF VNR  FPY      LVS GVD  RID 
Sbjct: 467 GEKSSDLAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDK 526
Query: 521 AIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLLKSGRNGKANG 578
            +  FG P+GP  L+D+ G            + FPDR    +   +D L ++ R G+ NG
Sbjct: 527 VMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALYEAKRLGQKNG 586
Query: 579 KGLYTYEKGSKPKP----DPSVL----PIIEECRRLSNIMPGGKVPISVTEKEIVEMILF 630
           KG Y YE   K K     D SVL    PI+ E R              VT+++I+  ++ 
Sbjct: 587 KGFYAYEADKKGKQKKLVDSSVLEVLKPIVYEQR-------------DVTDEDIINWMMI 633
Query: 631 PVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQL 690
           P+  E+ R LE+GIV  A++ D   V G+ FP +RGG + + D++G         ++++L
Sbjct: 634 PLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQYAEL 693
Query: 691 YGNFFKPSRFLEERATKG 708
            G  + P+  L E A  G
Sbjct: 694 -GALYHPTAKLREMAKNG 710

>pdb|1ZCJ|A Chain A, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase Length = 463

Iteration: 1
 Score =  212 bits (539), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 140/448 (31%), Positives = 219/448 (48%), Gaps = 25/448 (5%)
Query: 279 SRGLVHVFFAQRATSKVPNVTDIGLK---PRGVRKVAVIGGGLMGSGIATAHILNNIYVV 335
           ++ L + FFA+++ +K    +    K    + V  V V+G G MG GIA +     I VV
Sbjct: 5   AKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGISVV 64
Query: 336 LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAV 395
             E + + L    K I   +    +R    Q+   +A   L+      E   VD+V+EAV
Sbjct: 65  AVESDPKQLDAAKKIITFTLEKEASRAH--QNGQASAKPKLRFSSSTKELSTVDLVVEAV 122
Query: 396 IESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPL 455
            E + LK+K+F+EL   C P   L TNTS ++++ +   T     +IG HFFSPAHVM L
Sbjct: 123 FEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRL 182
Query: 456 LEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDV 515
           LE++ +  +S   I  +M+             NC GF  NR   PY      L+  G   
Sbjct: 183 LEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGSKP 242
Query: 516 FRIDSAIRSFGLPIGPFQLLDLAGYGVA-------AATSKEFDKAFPDR----SFQSPLV 564
             +D  +  FG  +GPF++ DLAG  V          T        P R    S  SPL 
Sbjct: 243 EDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLG 302
Query: 565 DLLLKSGRNGKANGKGLYTYEK--GSKPKPDPSVLPIIEECRRLSNIMPGGKVPISVTEK 622
           D+L ++GR G+  GKG Y Y+K  G   KPDP +   + + R + +I        +++++
Sbjct: 303 DMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHIE-----QRTISKE 357
Query: 623 EIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYT 682
           EI+E  L+ ++NE+ R+LEEG+  R   +D   + G  +P ++GG +F+A +VG   V  
Sbjct: 358 EILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLE 417
Query: 683 SLKKWSQLYGNF--FKPSRFLEERATKG 708
            L+K+ +   +    +PS +L     +G
Sbjct: 418 KLQKYYRQNPDIPQLEPSDYLRRLVAQG 445

>pdb|3K6J|A Chain A, Crystal Structure Of The Dehydrogenase Part Of Multifuctional Enzyme 1 From C.Elegans Length = 460

Iteration: 1
 Score =  176 bits (446), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 112/385 (29%), Positives = 185/385 (48%), Gaps = 16/385 (4%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V  VA+IGGG MG  +A    L  I   L   N +   + ++ + A  +          +
Sbjct: 54  VNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIE 113
Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
           K N  LK+     D+ +  + D+++E+VIE + LK+++F+ LE  C   CI  TNTS++D
Sbjct: 114 KINANLKITS---DFHKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLD 170
Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXX 487
           LN +         ++G HFF+PA+V+ L+EI+    TS+Q I                  
Sbjct: 171 LNEISSVLRDPSNLVGIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVG 230
Query: 488 NCTGFAVNRAFFPY-SQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAAT 546
           NC  F  NR    Y  QS +L+   G    +ID  I +FG  +GP  + D+ G+ V    
Sbjct: 231 NCKSFVFNRLLHVYFDQSQKLMYEYGYLPHQIDKIITNFGFLMGPMTVADMNGFDVMEKL 290
Query: 547 SKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECRRL 606
            KE +   P+     P+   + +  R G+   KG Y Y+  ++ K + + +  I   RR+
Sbjct: 291 KKE-NGLEPN-----PIEKEMWRLKRYGRKTNKGFYKYDDKTQRKENDTEMEQI--IRRV 342
Query: 607 SNIMPGGKVPIS-VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYR 665
           S      K  I  + +++++  +L+P VNE  R +EEG++   S +D   +LG  +P + 
Sbjct: 343 S---QNAKSNIQIINDQDVINFMLYPTVNEGYRCIEEGVISNESLIDIMFILGFGWPIHS 399
Query: 666 GGIVFWADAVGANYVYTSLKKWSQL 690
           GG + +    G + +   L  WS L
Sbjct: 400 GGPMRFGKTEGLDKIANMLVHWSSL 424

>pdb|3MOG|A Chain A, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase From Escherichia Coli K12 Substr. Mg1655 Length = 483

Iteration: 1
 Score =  162 bits (411), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 103/281 (36%), Positives = 150/281 (53%), Gaps = 4/281 (1%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V+ VAVIG G MG+GIA     +   V+L ++++E L + I  I A +   VTRGKLT +
Sbjct: 5   VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAE 64
Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
                LK L  V D       D+VIEA  E + +K+ +F++L + CPP  +L TNTS+I 
Sbjct: 65  TCERTLKRLIPVTDIHALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSIS 124
Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXX 487
           +  +  +  + +R+ G HFF+PA VM L+E+V    T+A+V+  L               
Sbjct: 125 ITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCH 184
Query: 488 NCTGFAVNRAFFP-YSQSARLLVSLGVDVFRIDSAIRS-FGLPIGPFQLLDLAGYGVA-A 544
           +  GF VNR   P YS++ R L         ID+A+R   G P+GP +L DL G  V  A
Sbjct: 185 STPGFIVNRVARPYYSEAWRALEEQVAAPEVIDAALRDGAGFPMGPLELTDLIGQDVNFA 244
Query: 545 ATSKEFDKAFPDRSFQSPLVDL-LLKSGRNGKANGKGLYTY 584
            T   F+  + +R F   LV   L+  GR GK +G G+Y +
Sbjct: 245 VTCSVFNAFWQERRFLPSLVQQELVIGGRLGKKSGLGVYDW 285

>pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination Of Human Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Provide Insight Into Catalytic Mechanism Length = 308

Iteration: 1
 Score =  137 bits (344), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 142/290 (48%), Gaps = 14/290 (4%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 368 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
           KA +    K L  +   ++   V    D+V+EA++E++ +K ++F  L+K    H I A+
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKRAAEHTIFAS 134
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 481
           NTS++ +  +   T+ QDR  G HFF+P  VM L+E+++T  TS +    L+        
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 482 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 538
                 +  GF VNR   PY   A  L   G D  +  ID+A++   G P+GPF+LLD  
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 539 GYGVAAATS---KEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 585
           G            E D   P     SP ++ L+   + GK  G+G Y Y+
Sbjct: 254 GLDTTKFIVDGWHEMDAENPLHQ-PSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa And Nad+ Length = 302

Iteration: 1
 Score =  136 bits (343), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 142/290 (48%), Gaps = 14/290 (4%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 368 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
           KA +    K L  +   ++   V    D+V+EA++E++ +K ++F  L+K    H I A+
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 481
           NTS++ +  +   T+ QDR  G HFF+P  VM L+E+++T  TS +    L+        
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 482 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 538
                 +  GF VNR   PY   A  L   G D  +  ID+A++   G P+GPF+LLD  
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 539 GYGVAAATS---KEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 585
           G            E D   P     SP ++ L+   + GK  G+G Y Y+
Sbjct: 254 GLDTTKFIVDGWHEMDAENPLHQ-PSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Revisited: Sequence Analysis And Crystal Structure Determination Length = 302

Iteration: 1
 Score =  136 bits (343), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 144/290 (49%), Gaps = 14/290 (4%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 368 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
           KA +    K L  +   ++   V    D+V+EA++E++ +K ++F  L+K    H I A+
Sbjct: 75  KAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFAS 134
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 481
           NTS++ +  +   T+ QDR  G HFF+P  +M L+E+V+T  TS + +  L+        
Sbjct: 135 NTSSLQITSLANATTRQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLGK 194
Query: 482 XXXXXXNCTGFAVNRAFFPY-SQSARLLVSLGVDVFRIDSAIR-SFGLPIGPFQLLDLAG 539
                 +  GF VNR   PY  ++ RL          ID+A++   G P+GPF+LLD  G
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLIEAVRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 254
Query: 540 YGVAAAT---SKEFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTYE 585
                       E D   P   FQ SP ++ L+   + GK  G+G Y Y+
Sbjct: 255 LDTTKFIIDGWHEMDSQNP--LFQPSPAMNKLVAENKFGKKTGEGFYKYK 302

>pdb|1F12|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3- Hydroxybutyryl-Coa Length = 310

Iteration: 1
 Score =  135 bits (341), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 142/290 (48%), Gaps = 14/290 (4%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 368 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
           KA +    K L  +   ++   V    D+V+EA++E++ +K ++F  L+K    H I A+
Sbjct: 75  KAGDECVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 481
           NTS++ +  +   T+ QDR  G HFF+P  VM L+E+++T  TS +    L+        
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 482 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 538
                 +  GF VNR   PY   A  L   G D  +  ID+A++   G P+GPF+LLD  
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 539 GYGVAAATS---KEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 585
           G            E D   P     SP ++ L+   + GK  G+G Y Y+
Sbjct: 254 GLDTTKFIVDGWHEMDAENPLHQ-PSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|1LSO|A Chain A, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad Length = 302

Iteration: 1
 Score =  135 bits (340), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 142/290 (48%), Gaps = 14/290 (4%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 368 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
           KA +    K L  +   ++   V    D+V+EA++E++ +K ++F  L+K    H I A+
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 481
           NT+++ +  +   T+ QDR  G HFF+P  VM L+E+++T  TS +    L+        
Sbjct: 135 NTASLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 482 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 538
                 +  GF VNR   PY   A  L   G D  +  ID+A++   G P+GPF+LLD  
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 539 GYGVAAATS---KEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 585
           G            E D   P     SP ++ L+   + GK  G+G Y Y+
Sbjct: 254 GLDTTKFIVDGWHEMDAENPLHQ-PSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|1LSJ|A Chain A, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl- Coa Dehydrogenase In Complex With Nad Length = 302

Iteration: 1
 Score =  135 bits (340), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 142/290 (48%), Gaps = 14/290 (4%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 368 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
           KA +    K L  +   ++   V    D+V+EA+++++ +K ++F  L+K    H I A+
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVQNLKVKNELFKRLDKFAAEHTIFAS 134
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 481
           NTS++ +  +   T+ QDR  G HFF+P  VM L+E+++T  TS +    L+        
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 482 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 538
                 +  GF VNR   PY   A  L   G D  +  ID+A++   G P+GPF+LLD  
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 539 GYGVAAATS---KEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 585
           G            E D   P     SP ++ L+   + GK  G+G Y Y+
Sbjct: 254 GLDTTKFIVDGWHEMDAENPLHQ-PSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3- Hydroxyacyl-Coa Dehydrogenase Length = 302

Iteration: 1
 Score =  135 bits (340), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 142/290 (48%), Gaps = 14/290 (4%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 368 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
           KA +    K L  +   ++   V    D+V+EA++E++ +K ++F  L+K    H I A+
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 481
           NTS++ +  +   T+ QDR  G HFF+P  VM L+++++T  TS +    L+        
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVQVIKTPMTSQKTFESLVDFSKALGK 194
Query: 482 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 538
                 +  GF VNR   PY   A  L   G D  +  ID+A++   G P+GPF+LLD  
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 539 GYGVAAATS---KEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 585
           G            E D   P     SP ++ L+   + GK  G+G Y Y+
Sbjct: 254 GLDTTKFIVDGWHEMDAENPLHQ-PSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|1M76|A Chain A, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad And Acetoacetyl-Coa Length = 302

Iteration: 1
 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 141/290 (48%), Gaps = 14/290 (4%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 368 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
           KA +    K L  +   ++   V    D+V+EA++E++ +K ++F  L+K    H I A+
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 481
           NT ++ +  +   T+ QDR  G HFF+P  VM L+E+++T  TS +    L+        
Sbjct: 135 NTCSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 482 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 538
                 +  GF VNR   PY   A  L   G D  +  ID+A++   G P+GPF+LLD  
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 539 GYGVAAATS---KEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 585
           G            E D   P     SP ++ L+   + GK  G+G Y Y+
Sbjct: 254 GLDTTKFIVDGWHEMDAENPLHQ-PSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|1M75|A Chain A, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad And Acetoacetyl-Coa Length = 302

Iteration: 1
 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 142/290 (48%), Gaps = 14/290 (4%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 368 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
           KA +    K L  +   ++   V    D+V+EA++E++ +K ++F  L+K    H I A+
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 481
           NTS++ +  +   T+ QDR  G HFF+P  VM L+E+++T  TS +    L+        
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 482 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 538
                 +  GF V+R   PY   A  L   G D  +  ID+A++   G P+GPF+LLD  
Sbjct: 195 HPVSCKDTPGFIVSRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 539 GYGVAAATS---KEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 585
           G            E D   P     SP ++ L+   + GK  G+G Y Y+
Sbjct: 254 GLDTTKFIVDGWHEMDAENPLHQ-PSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|3PEA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis Str. 'ames Ancestor' Length = 261

Iteration: 1
 Score =  125 bits (315), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 125/282 (44%), Gaps = 37/282 (13%)
Query: 12  NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
            D +A+ TL + P NA +  +   + +  ++    D+++ +V+ G G  FS G DI  F 
Sbjct: 13  EDHIAVATLNHAPANAXSSQVXHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFT 72
Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQL 131
            V  A   + +  +  ++    +E C KP+                  CH R A    +L
Sbjct: 73  SVTEAKQATELAQLG-QVTFERVEKCSKPVIAAIHGAALGGGLEFAXSCHXRFATESAKL 131
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
           GLPELTLG+IPGF GTQRLPR VG +KA E  L S  IT  E  K GL++ V   E  L 
Sbjct: 132 GLPELTLGLIPGFAGTQRLPRYVGKAKACEXXLTSTPITGAEALKWGLVNGVFAEETFLD 191
Query: 192 VSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVI 251
            +   A  IA +               S + AR VL+L  LQ  K++             
Sbjct: 192 DTLKVAKQIAGK---------------SPATARAVLEL--LQTTKSSHY----------- 223
Query: 252 EEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 293
                   Y GV +EA++F E+   +  R  V  F  +R  S
Sbjct: 224 --------YEGVQREAQIFGEVFTSEDGREGVAAFLEKRKPS 257

>pdb|2HDH|A Chain A, Biochemical Characterization And Structure Determination Of Human Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Provide Insight Into Catalytic Mechanism Length = 293

Iteration: 1
 Score =  110 bits (275), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 127/273 (46%), Gaps = 17/273 (6%)
Query: 324 ATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNAL--KMLKGVLD 381
           AT H      VVL +   + L K  K IE ++R +  +      KA +    K L  +  
Sbjct: 25  ATGHT-----VVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVAKTLSTIAT 79
Query: 382 YSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSS 437
            ++   V    D+V+EA++E++ +K ++F  L+K    H I A+NTS++ +  +   T+ 
Sbjct: 80  STDAASVVHSTDLVVEAIVENLKVKNELFKRLDKRAAEHTIFASNTSSLQITSIANATTR 139
Query: 438 QDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRA 497
           QDR  G HFF+P  V  L+E+++T  TS +    L+              +  GF VNR 
Sbjct: 140 QDRFAGLHFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRL 199
Query: 498 FFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLAGYGVAAATSKEFDKAF 554
             PY   A  L   G D  +  ID+A +   G P GPF+LLD  G          + +  
Sbjct: 200 LVPYLXEAIRLYERG-DASKEDIDTAXKLGAGYPXGPFELLDYVGLDTTKFIVDGWHEXD 258
Query: 555 PDRSFQ--SPLVDLLLKSGRNGKANGKGLYTYE 585
            +      SP ++ L+   + GK  G+G Y Y+
Sbjct: 259 AENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 291

>pdb|3RQS|A Chain A, Crystal Structure Of Human L-3- Hydroxyacyl-Coa Dehydrogenase (Ec1.1.1.35) From Mitochondria At The Resolution 2.0 A, Northeast Structural Genomics Consortium Target Hr487, Mitochondrial Protein Partnership Length = 324

Iteration: 1
 Score =  110 bits (274), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/274 (30%), Positives = 127/274 (46%), Gaps = 19/274 (6%)
Query: 324 ATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNAL--KMLKGVLD 381
           AT H      VVL +   + L K  K IE ++R +  +      KA +    K L  +  
Sbjct: 58  ATGHT-----VVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT 112
Query: 382 YSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSS 437
            ++   V    D+V+EA++E++ +K ++F  L+K    H I A+NTS++ +  +   T+ 
Sbjct: 113 STDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTR 172
Query: 438 QDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRA 497
           QDR  G HFF+P  V  L+E+++T  TS +    L+              +  GF VNR 
Sbjct: 173 QDRFAGLHFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRL 232
Query: 498 FFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLAGYGVAAATS---KEFD 551
             PY   A  L   G D  +  ID+A +   G P GPF+LLD  G            E D
Sbjct: 233 LVPYLXEAIRLYERG-DASKEDIDTAXKLGAGYPXGPFELLDYVGLDTTKFIVDGWHEXD 291
Query: 552 KAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 585
              P     SP ++ L+   + GK  G+G Y Y+
Sbjct: 292 AENPLHQ-PSPSLNKLVAENKFGKKTGEGFYKYK 324

>pdb|3MOY|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycob Smegmatis Length = 263

Iteration: 1
 Score = 89.0 bits (219), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 104/203 (51%), Gaps = 13/203 (6%)
Query: 14  GVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
           GV +I L  P  +NAL   + A + D   +  +  ++ AIV+TG+   F+ G DI     
Sbjct: 19  GVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADI----- 73
Query: 73  VHGAGDVSLMPDVSVELVV----NLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPK 128
              A  V+L P  + E  +    + +   +KPI                M C   IAA  
Sbjct: 74  ---AEMVTLTPHQARERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADT 130
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
            + G PE+TLG++PG GGTQRL R VG +KA+++ L  +S+T+EE  ++GL+  +V + +
Sbjct: 131 ARFGQPEITLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEEAERVGLVSRIVPAAD 190
Query: 189 LLKVSRLWALDIAARRKPWIRSL 211
           LL  +   A  IA   +P  R++
Sbjct: 191 LLDEALAVAQRIARMSRPAGRAV 213

>pdb|4DYD|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds By Diketoreductase Length = 283

Iteration: 1
 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 132/292 (45%), Gaps = 25/292 (8%)
Query: 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT-RGKLT 365
           G+  V V+G G++GS IA     +   V   ++N++ L    K  E    GL     K  
Sbjct: 3   GITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFE----GLAAVYEKEV 58
Query: 366 QDKANNALKMLKGVLDYSE-----FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
              A+ A +   G + YS+      KD D+VIEAV ES+ LK+ I+++L +  P   I A
Sbjct: 59  AGAADGAAQKALGGIRYSDDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFA 118
Query: 421 TNTST-IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXX 479
           TN+ST +  ++VG  T   D+ +  HF +   V    E++ T +T  +V   ++      
Sbjct: 119 TNSSTLLPSDLVG-YTGRGDKFLALHFANHVWVNNTAEVMGTTKTDPEVYQQVVEFASAI 177
Query: 480 XXX-XXXXXNCTGFAVNRAFFP-YSQSARLLVSLGVDVFRIDSAIR-SFGLPIGPFQLLD 536
                       G+ +N    P    +A LLV    D   ID   R   G P GPF++ D
Sbjct: 178 GMVPIELKKEKAGYVLNSLLVPLLDAAAELLVDGIADPETIDKTWRIGTGAPKGPFEIFD 237
Query: 537 LAG----YGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTY 584
           + G    Y +++ +  +       R F + L +  +  G+ G A G+G Y Y
Sbjct: 238 IVGLTTAYNISSVSGPK------QREFAAYLKENYIDKGKLGLATGEGFYRY 283

>pdb|1ZEJ|A Chain A, Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrogenase (Hbd-9, Af2017) From Archaeoglobus Fulgidus Dsm 4304 At 2.00 A Resolution Length = 293

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/281 (30%), Positives = 125/281 (44%), Gaps = 29/281 (10%)
Query: 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKA 369
           KV VIG GL G GIA A I +   VVL++V+        K +EA  R  +    L++ + 
Sbjct: 14  KVFVIGAGLXGRGIAIA-IASKHEVVLQDVSE-------KALEA-AREQIPEELLSKIEF 64
Query: 370 NNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429
              L+ +K         D D+V EAV E +  K ++  E+E+    +  L +NTS I ++
Sbjct: 65  TTTLEKVK---------DCDIVXEAVFEDLNTKVEVLREVERLT--NAPLCSNTSVISVD 113
Query: 430 IVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNC 489
            + E+  S  R +G H+ +P HV PL+EIV +  T ++ +  +                C
Sbjct: 114 DIAERLDSPSRFLGVHWXNPPHVXPLVEIVISRFTDSKTVAFVEGFLRELGKEVVV---C 170
Query: 490 TGFA-VNRAFFPYSQSARLLVSLGVDVFRIDSAIR-SFGL---PIGPFQLLDLAGYGVAA 544
            G + VNR        A   +  GV    +D   +   GL     GP   LD  G  VA 
Sbjct: 171 KGQSLVNRFNAAVLSEASRXIEEGVRAEDVDRVWKHHLGLLYTLFGPLGNLDYIGLDVAY 230
Query: 545 ATSKEFDKAFPDRSFQSP-LVDLLLKSGRNGKANGKGLYTY 584
             S    K F D  F+ P  +   +K G  G   GKG+Y Y
Sbjct: 231 YASLYLYKRFGDEKFKPPEWLQEKIKKGEVGVKAGKGIYEY 271

>pdb|4FZW|A Chain A, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 258

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 97/196 (49%), Gaps = 12/196 (6%)
Query: 15  VAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV 73
           V ++TL  P   NAL   ++  L ++ E A +   +   V+TGN   F+ G D+N   + 
Sbjct: 15  VLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAEK 74
Query: 74  HGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGL 133
             A  ++   D   +L   L +   KP+                + C   +A    + GL
Sbjct: 75  DLAATLN---DTRPQLWARL-QAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGL 130
Query: 134 PELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVS 193
           PE+TLG++PG GGTQRL R VG S A +M+L  +SIT+++  + GL+  V  S+  L+  
Sbjct: 131 PEITLGIMPGAGGTQRLIRSVGKSLASKMVLSGESITAQQAQQAGLVSDVFPSDLTLE-- 188
Query: 194 RLWALDIA---ARRKP 206
             +AL +A   AR  P
Sbjct: 189 --YALQLASKMARHSP 202

>pdb|3H81|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 278

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 9/190 (4%)
Query: 15  VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV 73
           V IITL  P  +NAL   ++  +     E     D+ AI++TG+   F+ G DI      
Sbjct: 35  VGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEM--- 91
Query: 74  HGAGDVSLMPDVSVELVVNL--IEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQL 131
               D++     + +       +   + P                 M C   IAA   + 
Sbjct: 92  ---ADLTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKF 148
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
           G PE+ LGV+PG GG+QRL R +G +KA++++L  +++ + E  + GL+  VV +++LL 
Sbjct: 149 GQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLT 208
Query: 192 VSRLWALDIA 201
            +R  A  I+
Sbjct: 209 EARATATTIS 218

>pdb|3Q0J|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Complex With The Inhibitor Acetoacetylcoa Length = 258

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 9/190 (4%)
Query: 15  VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV 73
           V IITL  P  +NAL   ++  +     E     D+ AI++TG+   F+ G DI      
Sbjct: 15  VGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEM--- 71
Query: 74  HGAGDVSLMPDVSVELVVNL--IEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQL 131
               D++     + +       +   + P                 M C   IAA   + 
Sbjct: 72  ---ADLTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKF 128
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
           G PE+ LGV+PG GG+QRL R +G +KA++++L  +++ + E  + GL+  VV +++LL 
Sbjct: 129 GQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLT 188
Query: 192 VSRLWALDIA 201
            +R  A  I+
Sbjct: 189 EARATATTIS 198

>pdb|3PZK|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Apo Form Length = 257

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 9/190 (4%)
Query: 15  VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV 73
           V IITL  P  +NAL   ++  +     E     D+ AI++TG+   F+ G DI      
Sbjct: 14  VGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEM--- 70
Query: 74  HGAGDVSLMPDVSVELVVNL--IEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQL 131
               D++     + +       +   + P                 M C   IAA   + 
Sbjct: 71  ---ADLTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKF 127
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
           G PE+ LGV+PG GG+QRL R +G +KA++++L  +++ + E  + GL+  VV +++LL 
Sbjct: 128 GQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLT 187
Query: 192 VSRLWALDIA 201
            +R  A  I+
Sbjct: 188 EARATATTIS 197

>pdb|1EY3|A Chain A, Structure Of Enoyl-Coa Hydratase Complexed With The Substrate Dac-Coa Length = 258

Iteration: 1
 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 86/200 (43%), Gaps = 15/200 (7%)
Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDIN-- 68
           N  V +I L  P  +NAL   ++  L    E       V AIVLTG    F+ G DI   
Sbjct: 12  NSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEM 71
Query: 69  ---VFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
               FQ  +    +S    ++           KKP+                M C    A
Sbjct: 72  QNRTFQDCYSGKFLSHWDHIT---------RIKKPVIAAVNGYALGGGCELAMMCDIIYA 122
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
             K Q G PE+ LG IPG GGTQRL R VG S A+EM+L    I++++  + GL+  +  
Sbjct: 123 GEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFP 182
Query: 186 SEELLKVSRLWALDIAARRK 205
            E L++ +   A  IA   K
Sbjct: 183 VETLVEEAIQCAEKIANNSK 202

>pdb|1MJ3|A Chain A, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In Complex With Hexadienoyl-Coa Length = 260

Iteration: 1
 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 86/200 (43%), Gaps = 15/200 (7%)
Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDIN-- 68
           N  V +I L  P  +NAL   ++  L    E       V AIVLTG    F+ G DI   
Sbjct: 14  NSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEM 73
Query: 69  ---VFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
               FQ  +    +S    ++           KKP+                M C    A
Sbjct: 74  QNRTFQDCYSGKFLSHWDHIT---------RIKKPVIAAVNGYALGGGCELAMMCDIIYA 124
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
             K Q G PE+ LG IPG GGTQRL R VG S A+EM+L    I++++  + GL+  +  
Sbjct: 125 GEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFP 184
Query: 186 SEELLKVSRLWALDIAARRK 205
            E L++ +   A  IA   K
Sbjct: 185 VETLVEEAIQCAEKIANNSK 204

>pdb|1DUB|A Chain A, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5 Length = 261

Iteration: 1
 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 86/200 (43%), Gaps = 15/200 (7%)
Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDIN-- 68
           N  V +I L  P  +NAL   ++  L    E       V AIVLTG    F+ G DI   
Sbjct: 15  NSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEM 74
Query: 69  ---VFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
               FQ  +    +S    ++           KKP+                M C    A
Sbjct: 75  QNRTFQDCYSGKFLSHWDHIT---------RIKKPVIAAVNGYALGGGCELAMMCDIIYA 125
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
             K Q G PE+ LG IPG GGTQRL R VG S A+EM+L    I++++  + GL+  +  
Sbjct: 126 GEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFP 185
Query: 186 SEELLKVSRLWALDIAARRK 205
            E L++ +   A  IA   K
Sbjct: 186 VETLVEEAIQCAEKIANNSK 205

>pdb|2PBP|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates Subunit I (Gk_2039) From Geobacillus Kaustophilus Hta426 Length = 258

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 88/186 (47%), Gaps = 19/186 (10%)
Query: 14  GVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
            V II L  P V NAL+  +VA +    E     + V+ IVLTG G  F+ G DI    K
Sbjct: 14  AVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAK 73
Query: 73  VHGAGDVSLMPDVSVEL-VVNLIED------CKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
                      D  + L  +N   D       K P+                + C   +A
Sbjct: 74  -----------DDPIRLEWLNQFADWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVA 122
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
           +   + G PE+ LGV+PG GGTQRL +L+G  +A+E +     ++++E  +LG+++ VV+
Sbjct: 123 SSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWLWTGARMSAKEAEQLGIVNRVVS 182
Query: 186 SEELLK 191
            E L++
Sbjct: 183 PELLME 188

>pdb|3HRX|A Chain A, Crystal Structure Of Phenylacetic Acid Degradation Protein Paag Length = 254

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 96/196 (48%), Gaps = 14/196 (7%)
Query: 12  NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
            DGV ++TL  P  +NA+   ++  L    +E     +V+A++LTG G  FS G D+  F
Sbjct: 7   QDGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEF 66
Query: 71  QKVHGAGDVSLMPDVSVEL-----VVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
                 GD    PD    L     VV  +   +KP+                +    R+A
Sbjct: 67  ------GDRK--PDYEAHLRRYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLA 118
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
           A         + +G++P  G +  LPRLVGL+KA E++LLS  +++EE   LGL+  VV 
Sbjct: 119 AVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLLLSPRLSAEEALALGLVHRVVP 178
Query: 186 SEELLKVSRLWALDIA 201
           +E+L++ +   A ++A
Sbjct: 179 AEKLMEEALSLAKELA 194

>pdb|3KQF|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis. Length = 265

Iteration: 1
 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 75/146 (51%), Gaps = 9/146 (6%)
Query: 41  EEATSRDDVKAIVLTGNGGR-FSGGFDINVFQKVHGAGDVSLMPDVS-VELVVNLIEDCK 98
           EEA +R     ++LTG G + F  G D+   ++  G  +  +   VS +      +E   
Sbjct: 50  EEANTR----VVILTGAGEKAFCAGADL---KERAGXNEEQVRHAVSXIRTTXEXVEQLP 102
Query: 99  KPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158
           +P+                + C  RIAA    LGL E TL +IPG GGTQRLPRL+G+ +
Sbjct: 103 QPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGR 162
Query: 159 AIEMMLLSKSITSEEGWKLGLIDAVV 184
           A E++   + I+++E  + GL++ VV
Sbjct: 163 AKELIYTGRRISAQEAKEYGLVEFVV 188

>pdb|2HW5|A Chain A, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa) Hydratase Short Chain 1, Echs1 Length = 286

Iteration: 1
 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 89/197 (45%), Gaps = 9/197 (4%)
Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           N+ V +I L  P  +NAL   ++  L    +       V AIVLTG    F+ G DI   
Sbjct: 40  NNTVGLIQLNRPKALNALCDGLIDELNQALKIFEEDPAVGAIVLTGGDKAFAAGADIKEM 99
Query: 71  QKVHGAGDVSLMPDVSVELVVNL--IEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPK 128
           Q      ++S     S + + +   +   KKP+                M C    A  K
Sbjct: 100 Q------NLSFQDCYSSKFLKHWDHLTQVKKPVIAAVNGYAFGGGCELAMMCDIIYAGEK 153
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
            Q   PE+ +G IPG GGTQRL R VG S A+EM+L    I++++  + GL+  +   E 
Sbjct: 154 AQFAQPEILIGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKICPVET 213
Query: 189 LLKVSRLWALDIAARRK 205
           L++ +   A  IA+  K
Sbjct: 214 LVEEAIQCAEKIASNSK 230

>pdb|2IEX|A Chain A, Crystal Structure Of Dihydroxynapthoic Acid Synthetase (Gk2873) From Geobacillus Kaustophilus Hta426 Length = 272

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 92/204 (45%), Gaps = 9/204 (4%)
Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
           +G+A IT+  P V NA     V  + D F +A    ++  I+LTG GG+ F  G D    
Sbjct: 20  NGIAKITINRPEVHNAFRPKTVNEMIDAFTKARDDSNIGVIILTGAGGKAFCSGGD---- 75
Query: 71  QKVHGAGDV---SLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
           QKV G G       +P ++V  +  LI    KP+                + C   IAA 
Sbjct: 76  QKVRGHGGYVGEDEIPRLNVLDLQRLIRVIPKPVIAMVAGYAIGGGHVLHVVCDLTIAAD 135
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
               G     +G   G  G   L R+VG  KA E+  L +  T++E  ++GL++ VV  E
Sbjct: 136 NAIFGQTGPKVGSFDGGYGAGYLARIVGHKKAREIWYLCRQYTAQEALEMGLVNKVVPLE 195
Query: 188 ELLKVSRLWALDIAARRKPWIRSL 211
           +L + +  WA +I  +    IR L
Sbjct: 196 QLEEETVKWAQEILEKSPTAIRFL 219

>pdb|4DI1|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From Mycobacterium Marinum Length = 277

Iteration: 1
 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 2/188 (1%)
Query: 10  VGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINV 69
           V + G+A + +  PP NA+   +   +    +E   RDD+ A+VL G    FS G D+  
Sbjct: 29  VADQGLATLVVSRPPTNAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPE 88
Query: 70  FQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKT 129
            + ++ A +      V +E  ++ +    KP                 +    R++    
Sbjct: 89  LRTLN-APEADTAARVRLE-AIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNV 146
Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
           + G  E+  G+IPG GG  RL R+VG S+A E++   +   +EE   LGLID +V  +++
Sbjct: 147 KFGATEILAGLIPGGGGMGRLTRVVGSSRAKELVFSGRFFDAEEALALGLIDDMVAPDDV 206
Query: 190 LKVSRLWA 197
              +  WA
Sbjct: 207 YDSAVAWA 214

>pdb|3HIN|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Rhodopseudomonas Palustris Cga009 Length = 275

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 4/149 (2%)
Query: 26  NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85
           NAL   ++A LKD   +    D ++A+V+ G G  FS G D++  ++        L+   
Sbjct: 38  NALNDGLMAALKDCLTDIP--DQIRAVVIHGIGDHFSAGLDLSELRERDAT--EGLVHSQ 93
Query: 86  SVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFG 145
           +   V + I+ C+ P+                   H R+A       LPE + G+  G G
Sbjct: 94  TWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVGGG 153
Query: 146 GTQRLPRLVGLSKAIEMMLLSKSITSEEG 174
           G+ RLPRL+G+++  +MML  +  ++ EG
Sbjct: 154 GSVRLPRLIGVARMADMMLTGRVYSAAEG 182

>pdb|3QKA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From Mycobacterium Marinum Length = 261

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 77/184 (41%), Gaps = 16/184 (8%)
Query: 8   MEVGNDGVAIITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
           ++V  +G     +IN P   NA+  P  A L   F E    +     VL GNGG F  G 
Sbjct: 10  VQVERNGPVTTVIINRPQARNAVNGPTAAALYSAFAEFDRDESASVAVLCGNGGTFCAGA 69
Query: 66  DINVF-----QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGC 120
           D+  F       VH  G   + P   +           KP+                + C
Sbjct: 70  DLKAFGTAEANAVHRTGPGPMGPSRMM---------LSKPVIAAVSGYAVAGGLELALWC 120
Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
             R+A      G+     GV    GGT RLPRL+G S+A++M+L  +++ ++E   +GL 
Sbjct: 121 DLRVAEQDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDMILTGRAVQADEALAIGLA 180
Query: 181 DAVV 184
           + VV
Sbjct: 181 NRVV 184

>pdb|3G64|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Streptomyces Coelicolor A3(2) Length = 279

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 84/194 (43%), Gaps = 4/194 (2%)
Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
            DGVA +TL  P  +NAL     A L+D   E + R  V+A+VL G G  F  G D++  
Sbjct: 24  TDGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEI 83
Query: 71  QKVHGAGDVSLMPDVS--VELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPK 128
                + D + + D +     VV  + +C  P+                +    R+A P 
Sbjct: 84  IGATLSXDTARLLDFNRXTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPS 143
Query: 129 TQLGLPELTLGVIPG-FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
           T+       +G+  G  G    LPR+VGL  A  ++ L  ++ + E  ++GLI  +    
Sbjct: 144 TRFAFLFTRVGLSGGDXGAAYLLPRVVGLGHATRLLXLGDTVRAPEAERIGLISELTEEG 203
Query: 188 ELLKVSRLWALDIA 201
              + +R  A  +A
Sbjct: 204 RADEAARTLARRLA 217

>pdb|2PPY|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From Geobacillus Kaustophilus Hta426 Length = 265

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 118 MGCHARIAAPKT-QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 176
           + C  R    +  ++GLPE++LGV+ G GGTQRL RL+G S+A++  +  ++IT +E  +
Sbjct: 121 LACDLRFXGDEAGKIGLPEVSLGVLAGTGGTQRLARLIGYSRALDXNITGETITPQEALE 180
Query: 177 LGLIDAVVTSEELLKVSRLWALDIA 201
           +GL++ V    E  + +R +A  +A
Sbjct: 181 IGLVNRVFPQAETRERTREYARKLA 205

>pdb|1HZD|A Chain A, Crystal Structure Of Human Auh Protein, An Rna-Binding Homologue Of Enoyl-Coa Hydratase Length = 272

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 5/178 (2%)
Query: 26  NALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDVSLMPD 84
           N+L+  ++  L    +   S   V+ I++     G F  G D+    K+  +    + P 
Sbjct: 34  NSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSS---EVGPF 90
Query: 85  VS-VELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPG 143
           VS +  V+N I +   P                 + C  R+AA   ++GL E  L +IPG
Sbjct: 91  VSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPG 150
Query: 144 FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIA 201
            GGTQRLPR +G+S A E++  ++ +  +E   +GLI  V+   +    +   ALD+A
Sbjct: 151 GGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLA 208

>pdb|3RSI|A Chain A, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 265

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 4/196 (2%)
Query: 1   MAAPRVTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG 58
           M+A R  + V  DG  +I  +N P   NAL+  +V+     ++E    D ++A +LTG G
Sbjct: 5   MSAARELL-VERDGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAG 63
Query: 59  GRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXM 118
             +  G D++    V       L P  ++   + L     KP+                 
Sbjct: 64  SAYCVGGDLSDGWMVRDGSAPPLDP-ATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQ 122
Query: 119 GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 178
               R++      GLPE+  G++PG G   RL R +  +KA+EM+L  + +T+ E +  G
Sbjct: 123 QTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQIPYTKAMEMILTGEPLTAFEAYHFG 182
Query: 179 LIDAVVTSEELLKVSR 194
           L+  VV +   L  +R
Sbjct: 183 LVGHVVPAGTALDKAR 198

>pdb|3T88|A Chain A, Crystal Structure Of Escherichia Coli Menb In Complex With Substrate Analogue, Osb-Ncoa Length = 289

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 81/197 (41%), Gaps = 2/197 (1%)
Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSG 63
           +  E   DG+A IT+  P V NA     V  +     +A   D++  I+LTG G + F  
Sbjct: 29  IRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCS 88
Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHAR 123
           G D  V     G  D S +  ++V      I  C KP+                M C   
Sbjct: 89  GGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLT 148
Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           IAA     G     +G   G  G   + R+VG  KA E+  L +   +++   +GL++ V
Sbjct: 149 IAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTV 208
Query: 184 VTSEELLKVSRLWALDI 200
           V   +L K +  W  ++
Sbjct: 209 VPLADLEKETVRWCREM 225

>pdb|4ELS|A Chain A, Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Coenzyme A Synthases (Menb) In Complex With Bicarbonate Length = 285

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 81/197 (41%), Gaps = 2/197 (1%)
Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSG 63
           +  E   DG+A IT+  P V NA     V  +     +A   D++  I+LTG G + F  
Sbjct: 25  IRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCS 84
Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHAR 123
           G D  V     G  D S +  ++V      I  C KP+                M C   
Sbjct: 85  GGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLT 144
Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           IAA     G     +G   G  G   + R+VG  KA E+  L +   +++   +GL++ V
Sbjct: 145 IAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTV 204
Query: 184 VTSEELLKVSRLWALDI 200
           V   +L K +  W  ++
Sbjct: 205 VPLADLEKETVRWCREM 221

>pdb|3TRR|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 256

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 84/198 (42%), Gaps = 25/198 (12%)
Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF- 70
           D V +IT+  P   NA+   +  GL    ++  S  D+   ++TG GG F  G D+  F 
Sbjct: 15  DRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFV 74
Query: 71  -----QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
                    G G  ++ P              +KPI                + C   +A
Sbjct: 75  SGEAVLSERGLGFTNVPP--------------RKPIIAAVEGFALAGGTELVLSCDLVVA 120
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
               + G+PE+  G++ G GG  RLP  +    A+E+ L  +S T+E+  K G I+ +V 
Sbjct: 121 GRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALTGESFTAEDAAKYGFINRLVD 180
Query: 186 SEELLKVSRLWALDIAAR 203
             + L      AL++AA+
Sbjct: 181 DGQALDT----ALELAAK 194

>pdb|3P85|A Chain A, Crystal Structure Enoyl-Coa Hydratase From Mycobacterium Avium Length = 270

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 24/210 (11%)
Query: 15  VAIITLINPPV-NALAIPIVAGLKDKF----EEATSRDDVKAIVLTGNGGRFSGGFDINV 69
           V  +TL  P   NAL+    A L+D+F     +A + DDV  +++TG    F  G D+  
Sbjct: 35  VRTLTLNRPQARNALS----AALRDRFFGALADAETDDDVDVVIITGADPVFCAGLDLKE 90
Query: 70  FQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKT 129
                  G  S +PD+S            KP+                + C   IA+   
Sbjct: 91  L------GGSSALPDISPRWPA-----LTKPVIGAINGAAVTGGLELALYCDILIASENA 139
Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
           +       +G++P +G + RLP+ VG+  A  M L    +++ +  + GL+  VV  ++L
Sbjct: 140 RFADTHARVGLLPTWGLSVRLPQKVGIGLARRMSLTGDYLSAADALRAGLVTEVVPHDQL 199
Query: 190 LKVSRLWALDIAARRKPWIRSL----HRTD 215
           L  +R  A  I    +  +R+L    HR D
Sbjct: 200 LGAARAVAASIVGNNQNAVRALLTSYHRID 229

>pdb|3SLL|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 290

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 94/208 (45%), Gaps = 9/208 (4%)
Query: 15  VAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV 73
           +A++TL  P  +NA+A  ++   K    + +  +DV+A+V+TG G  F  G D      +
Sbjct: 34  IALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPI 93
Query: 74  HGAGDVSLMPDV---SVELVVNLIEDCKK---PIXXXXXXXXXXXXXXXXMGCHARIAAP 127
              G ++  P +   S+EL+  +I   ++   P+                + C  R+A+ 
Sbjct: 94  PHIGGLT-QPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQ 152
Query: 128 KTQLGLPELTLGVIPG-FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186
                   +  G+     G +  LPR +G S+A ++ML  + + ++E  ++GL+   V S
Sbjct: 153 DAYFRAAGINNGLTASELGLSYLLPRAIGTSRASDIMLTGRDVDADEAERIGLVSRKVAS 212
Query: 187 EELLKVSRLWALDIAARRKPWIRSLHRT 214
           E LL+        IA   +P I    RT
Sbjct: 213 ESLLEECYAIGERIAGFSRPGIELTKRT 240

>pdb|3H02|A Chain A, 2.15 Angstrom Resolution Crystal Structure Of Naphthoate Synthase From Salmonella Typhimurium. Length = 288

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 76/194 (39%), Gaps = 2/194 (1%)
Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSG 63
           +  E   DG+A IT+  P V NA     V        +A   D+V  I+LTG G + F  
Sbjct: 28  IRYEKSTDGIAKITINRPQVRNAFRPLTVKEXIQALADARYDDNVGVIILTGEGDKAFCA 87
Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHAR 123
           G D  V     G  D S +  ++V      I  C KP+                  C   
Sbjct: 88  GGDQKVRGDYGGYQDDSGVHHLNVLDFQRQIRTCPKPVVAXVAGYSIGGGHVLHXXCDLT 147
Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           IAA     G     +G   G  G     R+VG  KA E+  L +   +++    GL++ V
Sbjct: 148 IAAENAIFGQTGPKVGSFDGGWGASYXARIVGQKKAREIWFLCRQYDAQQALDXGLVNTV 207
Query: 184 VTSEELLKVSRLWA 197
           V   +L K +  W 
Sbjct: 208 VPLADLEKETVRWC 221

>pdb|2UZF|A Chain A, Crystal Structure Of Staphylococcus Aureus 1,4-Dihydroxy-2- Naphthoyl Coa Synthase (Menb) In Complex With Acetoacetyl Coa Length = 273

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 89/220 (40%), Gaps = 14/220 (6%)
Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVF 70
           +G+A +T+  P V NA     VA + D F  A    +V  IVLTG G   F  G D    
Sbjct: 21  EGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGD---- 76
Query: 71  QKVHGAGDV---SLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
           QK  G G       +P ++V  +  LI    KP+                + C   IAA 
Sbjct: 77  QKKRGHGGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAAD 136
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
               G     +G      G+  L R+VG  KA E+  L +   ++E   +GL++ VV  E
Sbjct: 137 NAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPLE 196
Query: 188 ELLKVSRLWALDIAARRKPWIRSLH-----RTDKLGSLSE 222
           ++   +  W  +I       +R L       TD L  L +
Sbjct: 197 KVEDETVQWCKEIMKHSPTALRFLKAAMNADTDGLAGLQQ 236

>pdb|3QRE|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase Echa12_1 From Mycobacterium Marinum Length = 298

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 89/209 (42%), Gaps = 9/209 (4%)
Query: 6   VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           V  E    GVAIIT      +NA    + AG     + A +   ++ IVLTG G  F  G
Sbjct: 31  VLYEATPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAG 90
Query: 65  FDINVFQKVHG-------AGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXX 117
             +       G       A D +L  D+  E   + +   +KP+                
Sbjct: 91  AYLGSADAAAGYDKTMAKAKDANLA-DLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQA 149
Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
           + C  R AA   +        G+I  FG +  LPRL   + A++++L  ++  +EE  +L
Sbjct: 150 LMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLTSWAVALDLLLSGRTFLAEEAAQL 209
Query: 178 GLIDAVVTSEELLKVSRLWALDIAARRKP 206
           GL+  VVT E+L+  +  +A DIA    P
Sbjct: 210 GLVKEVVTPEQLMPRALEYAEDIARYCSP 238

>pdb|3QYR|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 24/210 (11%)
Query: 15  VAIITLINPPV-NALAIPIVAGLKDKF----EEATSRDDVKAIVLTGNGGRFSGGFDINV 69
           V  +TL  P   NAL+    A L+D+F     +A + DDV  +++TG    F  G D+  
Sbjct: 18  VRTLTLNRPQARNALS----AALRDRFFGALADAETDDDVDVVIITGADPVFCAGLDLKE 73
Query: 70  FQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKT 129
                  G  S +PD+S            KP+                + C   IA+   
Sbjct: 74  L------GGSSALPDISPRWPA-----LTKPVIGAINGAAVTGGLELALYCDILIASENA 122
Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
           +       +G++P +G + RLP+ VG+  A  M L    +++ +  + GL+  VV  ++L
Sbjct: 123 RFADTHARVGLLPTWGLSVRLPQKVGIGLARRMSLTGDYLSAADALRAGLVTEVVPHDQL 182
Query: 190 LKVSRLWALDIAARRKPWIRSL----HRTD 215
           L  ++  A  I    +  +R+L    HR D
Sbjct: 183 LGAAQAVAASIVGNNQNAVRALLASYHRID 212

>pdb|1JXZ|A Chain A, Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coenzyme A Dehalogenase Complexed With 4-Hydroxybenzoyl-Coenzyme A (Product) Length = 269

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 88/195 (45%), Gaps = 4/195 (2%)
Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF---DI 67
            DGVA IT+  P   NAL++  +  + D    A   D V A+++TG    F  GF   +I
Sbjct: 10  EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREI 69
Query: 68  NVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
            + + V G  D   +  +  + +++ I   K+P+                +     I A 
Sbjct: 70  PLDKGVAGVRDHFRIAALWWQQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICAD 129
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
             +      T+G+      +  L R+VG+ +A+E+ML ++++  EE    GL+  V   +
Sbjct: 130 SAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKD 189
Query: 188 ELLKVSRLWALDIAA 202
           E  +V+   A ++AA
Sbjct: 190 EFREVAWKVARELAA 204

>pdb|1NZY|A Chain A, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 87/195 (44%), Gaps = 4/195 (2%)
Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF---DI 67
            DGVA IT+  P   NAL++  +  + D    A   D V A+++TG    F  GF   +I
Sbjct: 10  EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREI 69
Query: 68  NVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
            + + V G  D   +  +    +++ I   K+P+                +     I A 
Sbjct: 70  PLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICAD 129
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
             +      T+G+      +  L R+VG+ +A+E+ML ++++  EE    GL+  V   +
Sbjct: 130 SAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKD 189
Query: 188 ELLKVSRLWALDIAA 202
           E  +V+   A ++AA
Sbjct: 190 EFREVAWKVARELAA 204

>pdb|1NZY|B Chain B, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 86/195 (44%), Gaps = 4/195 (2%)
Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF---DI 67
            DGVA IT+  P   NAL++  +  + D    A   D V A+++TG    F  GF   +I
Sbjct: 10  EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREI 69
Query: 68  NVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
            + + V G  D   +  +    +++ I   K+P+                +     I A 
Sbjct: 70  PLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICAD 129
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
             +      T+G+      +  L R+VG+ +A+E+ML  +++  EE    GL+  V   +
Sbjct: 130 SAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTDRTLYPEEAKDWGLVSRVYPKD 189
Query: 188 ELLKVSRLWALDIAA 202
           E  +V+   A ++AA
Sbjct: 190 EFREVAWKVARELAA 204

>pdb|3QXZ|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 4/196 (2%)
Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
            DGVA++TL  P   N+  + +   L   ++       V+ IVLTG    F  G  I+  
Sbjct: 14  RDGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAA 73
Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQ 130
            +   A      PD S   V     + + P+                +    RI A + +
Sbjct: 74  AETFAA---PRNPDFSASPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGR 130
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
             +P++  GV P       LPRLVG + A E++L   S +++   + GL +  + + ++L
Sbjct: 131 YAIPQVRFGVAPDALAHWTLPRLVGTAVAAELLLTGASFSAQRAVETGLANRCLPAGKVL 190
Query: 191 KVSRLWALDIAARRKP 206
             +   A DIA    P
Sbjct: 191 GAALRMAHDIATNVAP 206

>pdb|4FZW|C Chain C, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 274

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 86/193 (44%), Gaps = 3/193 (1%)
Query: 14  GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDIN--VF 70
           GV  +TL  P  +N+    + A L +  ++    D ++ ++LTG G  F  G D+N    
Sbjct: 24  GVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDLNDRNV 83
Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQ 130
                A D+ +  +     +V  +    KP+                +G    IAA   +
Sbjct: 84  DPTGPAPDLGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAK 143
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
             +    LG+IP  GGT  LPR+ G ++A+ + LL   +++E+  + G+I  VV  E L 
Sbjct: 144 FVMAFSKLGLIPDCGGTWLLPRVAGRARAMGLALLGNQLSAEQAHEWGMIWQVVDDETLA 203
Query: 191 KVSRLWALDIAAR 203
             ++  A  +A +
Sbjct: 204 DTAQQLARHLATQ 216

>pdb|3P5M|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Avium Length = 255

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 81/187 (43%), Gaps = 10/187 (5%)
Query: 8   MEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
           + V +DG  +   ++ P  +NA+  P++  L     +A + + V+A++LTG G  F  G 
Sbjct: 8   ISVEHDGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGG 67
Query: 66  DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
           D+                  +   VV  I    KP+                + C   +A
Sbjct: 68  DLTGGDTA--------GAADAANRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVA 119
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
           AP +   L    +G++P  G +  LP L+G ++   M + ++ I++   ++ G+I  + +
Sbjct: 120 APASYFQLAFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGMISHITS 179
Query: 186 SEELLKV 192
           ++E   V
Sbjct: 180 ADEYESV 186

>pdb|3PE8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 256

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 16/211 (7%)
Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
            D V  +TL  P   NAL+  + +       +A + DDV  +++TG    F  G D+   
Sbjct: 16  TDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKEL 75
Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQ 130
                 GD + +PD+S +       D  KP+                + C   IA+   +
Sbjct: 76  ------GDTTELPDISPKW-----PDMTKPVIGAINGAAVTGGLELALYCDILIASENAK 124
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
                  +G++P +G + RLP+ VG+  A  M L    +++++  + GL+  VV  ++LL
Sbjct: 125 FADTHARVGLMPTWGLSVRLPQKVGVGLARRMSLTGDYLSAQDALRAGLVTEVVAHDDLL 184
Query: 191 KVSRLWALDIAARRKPWIRSL----HRTDKL 217
             +R  A  I    +  +R+L    HR D L
Sbjct: 185 TAARRVAASIVGNNQKAVRALLDSYHRIDAL 215

>pdb|2VX2|A Chain A, Crystal Structure Of Human Enoyl Coenzyme A Hydratase Domain-Containing Protein 3 (Echdc3) Length = 287

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 87/209 (41%), Gaps = 9/209 (4%)
Query: 4   PRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFS 62
           PR T     DG+  I L NP   N L++ ++  L+         +D+K I+++  G  FS
Sbjct: 32  PRPTSARQLDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFS 91
Query: 63  GGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHA 122
            G D+    +  G  D       +   V+  I +   P+                  C  
Sbjct: 92  SGHDLKELTEEQGR-DYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDI 150
Query: 123 RIAAPKTQLGLPELTLGVI---PGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
            +A+ K+    P + +G+    PG    + +PR V    A+EM+   + I+++E    GL
Sbjct: 151 AVASDKSSFATPGVNVGLFCSTPGVALARAVPRKV----ALEMLFTGEPISAQEALLHGL 206
Query: 180 IDAVVTSEELLKVSRLWALDIAARRKPWI 208
           +  VV   EL + +   A  IA+  +P +
Sbjct: 207 LSKVVPEAELQEETMRIARKIASLSRPVV 235

>pdb|3Q1T|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Avium Length = 278

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 86/192 (44%), Gaps = 4/192 (2%)
Query: 4   PRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           P +  E+G+DGV  + L +P +N++   +   L D +        V+A+++ G G  FS 
Sbjct: 19  PSLRCELGDDGVLTVVLDSPGLNSVGPQMHRDLADIWPVIDRDPAVRAVLVRGEGKAFSS 78
Query: 64  GFDINVFQKVHG--AGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCH 121
           G   ++  +  G   G + +M +   +LV N+I +C  P+                +   
Sbjct: 79  GGSFDLIDETIGDYQGRIRIMREAR-DLVHNMI-NCDTPVVSAIRGPAVGAGLVVALLAD 136
Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
             +A    +L      LGV  G       P LVG++KA   +L  +++  EE  ++GL+ 
Sbjct: 137 ISVAGRTAKLIDGHTKLGVAAGDHAAICWPLLVGMAKAKYYLLTCETLLGEEAERIGLVS 196
Query: 182 AVVTSEELLKVS 193
             V  +++L  +
Sbjct: 197 LCVDDDDVLSTA 208

>pdb|3QK8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From Mycobacterium Marinum In Complex With An Unknown Ligand Length = 272

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 94/213 (44%), Gaps = 4/213 (1%)
Query: 4   PRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           P +  E G  GV  + L +P +N++   +   L D +       DV+ +++ G G  FS 
Sbjct: 13  PSLRFEPGEHGVLNLVLDSPGLNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSS 72
Query: 64  GFDINVFQKVHG--AGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCH 121
           G    +  +  G   G + +M +   +LV+NL+ +  KP+                +   
Sbjct: 73  GGSFELIDETIGDYEGRIRIMREAR-DLVLNLV-NLDKPVVSAIRGPAVGAGLVVALLAD 130
Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
             +A+   ++      LGV  G       P LVG++KA   +L  ++++ EE  ++GL+ 
Sbjct: 131 ISVASATAKIIDGHTKLGVAAGDHAAICWPLLVGMAKAKYYLLTCETLSGEEAERIGLVS 190
Query: 182 AVVTSEELLKVSRLWALDIAARRKPWIRSLHRT 214
             V  +E+L  +   A ++A   +  IR   R+
Sbjct: 191 TCVDDDEVLPTATRLAENLAQGAQNAIRWTKRS 223

>pdb|2EJ5|A Chain A, Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydratase Subunit Ii) From Geobacillus Kaustophilus Length = 257

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 72/157 (45%), Gaps = 4/157 (2%)
Query: 15  VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV 73
           VA +TL  P  +NA    + A +    ++A +  +V+ +V+TG G  F  G D++   + 
Sbjct: 13  VAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEE 72
Query: 74  HGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGL 133
              GDV       +   ++ +E   KP+                + C  R+ + K     
Sbjct: 73  MDHGDVLRSRYAPMMKALHHLE---KPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAP 129
Query: 134 PELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSIT 170
             + +G++P  G    LPRLVG +KA+E+ +L + +T
Sbjct: 130 AFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVT 166

>pdb|4EML|A Chain A, Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoyl-Coenzyme A Synthase (Menb) In Complex With Bicarbonate Length = 275

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 83/204 (40%), Gaps = 6/204 (2%)
Query: 14  GVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG--GFDINVF 70
           G+A I +  P   NA     V  L D F  A   + +  ++LTG G    G   F     
Sbjct: 19  GIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGD 78
Query: 71  QKVHGAG---DVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
           Q V G G   D    P ++V  +  LI    K +                + C   IAA 
Sbjct: 79  QSVRGEGGYIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAAD 138
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
               G     +G   G  G+  L R+VG  KA E+  L +  +++E  ++G+++ VV  +
Sbjct: 139 NAIFGQTGPKVGSFDGGFGSSYLARIVGQKKAREIWYLCRQYSAQEAERMGMVNTVVPVD 198
Query: 188 ELLKVSRLWALDIAARRKPWIRSL 211
            L +    WA +I ++    IR L
Sbjct: 199 RLEEEGIQWAKEILSKSPLAIRCL 222

>pdb|4F47|A Chain A, The Structure Of Enoyl-Coa Hydratase Echa19 From Mycobacterium Marinum Length = 278

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 88/205 (42%), Gaps = 5/205 (2%)
Query: 14  GVAIITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           G  +I  +N P   NAL+  ++  + + ++   +  D++  +LTG GG F  G D+    
Sbjct: 28  GHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGYFCAGMDLKAAT 87
Query: 72  KVHGAGDVSLMPDVSVELVVNLIED--CKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKT 129
           K    GD           +  L++    KKP+                 G   R+AA   
Sbjct: 88  K-KPPGDSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESA 146
Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
           + G+ E    + P  G   RL R +  + A +++L  + IT+ E  ++GL+  VV   + 
Sbjct: 147 KFGISEAKWSLYPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEMGLVGHVVPDGQA 206
Query: 190 LKVSRLWALDIAARRKPWIRSLHRT 214
           L  +   A  IAA     ++++ RT
Sbjct: 207 LTKALEIAEIIAANGPLAVQAILRT 231

>pdb|3R0O|A Chain A, Crystal Structure Of Carnitinyl-Coa Hydratase From Mycobacterium Avium Length = 273

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 79/183 (43%), Gaps = 27/183 (14%)
Query: 15  VAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDI----- 67
           VA+IT+  P   NA+   +   + D  EEA    +V A+V+TG G + F  G D+     
Sbjct: 25  VALITIDRPDARNAVNGAVSTAVGDALEEAQRDPEVWAVVITGAGDKSFCAGADLKAISR 84
Query: 68  --NVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
             N++   H        P+      V+   D  KP                 +     IA
Sbjct: 85  GENLYHAEH--------PEWGFAGYVHHFID--KPTIAAVNGTALGGGSELALASDLVIA 134
Query: 126 APKTQLGLPELTLGVIPGFGG----TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
                 GLPE+  G+I G GG     ++LPR V    A+E++L  + +T+ +  + GLI+
Sbjct: 135 CESASFGLPEVKRGLIAGAGGVFRIVEQLPRKV----ALELVLTGEPMTASDALRWGLIN 190
Query: 182 AVV 184
            VV
Sbjct: 191 EVV 193

>pdb|3R9Q|A Chain A, Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 262

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 78/185 (42%), Gaps = 4/185 (2%)
Query: 26  NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85
           NA+  P  A L   F E  +  +    VL G+ G F  G D+       G     L P  
Sbjct: 33  NAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTFCAGADLKAMGTDRGN---ELHPHG 89
Query: 86  SVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFG 145
              +  + +    KP+                + C  R+      LG+     GV    G
Sbjct: 90  PGPMGPSRLR-LSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLIDG 148
Query: 146 GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRK 205
           GT RLPRL+G S+A++++L  + + + E   +GL++ VV   +  + +   A +IAA  +
Sbjct: 149 GTIRLPRLIGHSRAMDLILTGRPVHANEALDIGLVNRVVARGQAREAAETLAAEIAAFPQ 208
Query: 206 PWIRS 210
             +R+
Sbjct: 209 QCVRA 213

>pdb|3ISA|A Chain A, Crystal Structure Of Putative Enoyl-Coa HydrataseISOMERASE FROM Bordetella Parapertussis Length = 254

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 6/155 (3%)
Query: 26  NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85
           NAL+  +V  L D  + A  R+ V  +V  G G  FS GFD   ++     GD+ L+  V
Sbjct: 29  NALSAELVEALIDGVD-AAHREQVPLLVFAGAGRNFSAGFDFTDYE-TQSEGDL-LLRMV 85
Query: 86  SVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFG 145
            +E+++  +                         C  R   P+    +P L  G++ G  
Sbjct: 86  RIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVLG-- 143
Query: 146 GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
            T+R   +VG  +A+ ++  +++  ++E  ++G +
Sbjct: 144 -TRRFRDIVGADQALSILGSARAFDADEARRIGFV 177

>pdb|1SG4|A Chain A, Crystal Structure Of Human Mitochondrial Delta3-delta2- Enoyl-coa Isomerase Length = 260

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 77/183 (42%), Gaps = 13/183 (7%)
Query: 14  GVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVF-- 70
           GVA++   NPPVN+L++  +  L    E+  +    + ++LT +  G FS G D+     
Sbjct: 14  GVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCG 73
Query: 71  -QKVHGAGDVSLMPDVSVELV-VNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAA-- 126
               H AG    + ++ + L   NL+      +                + C  RI A  
Sbjct: 74  RSPAHYAGYWKAVQELWLRLYQSNLV------LVSAINGACPAGGCLVALTCDYRILADN 127
Query: 127 PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186
           P+  +GL E  LG+I  F     L   +G   A   + L       E  ++G++D VV  
Sbjct: 128 PRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPE 187
Query: 187 EEL 189
           E++
Sbjct: 188 EQV 190

>pdb|3R9T|A Chain A, Structure Of Echa1_1 From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 267

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 75/181 (41%), Gaps = 19/181 (10%)
Query: 15  VAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDI----- 67
           V +IT+  P   NA+   +  G+ D  EEA    +V+A+VLTG G + F  G D+     
Sbjct: 19  VMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIAR 78
Query: 68  --NVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
             N++   H        P+      V    D  KP                 +     +A
Sbjct: 79  RENLYHPDH--------PEWGFAGYVRHFID--KPTIAAVNGTALGGGTELALASDLVVA 128
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
             + Q GLPE+  G+I   GG  R+   +    A+ ++L  + +++      GLI+ VV 
Sbjct: 129 DERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGLINEVVE 188
Query: 186 S 186
           +
Sbjct: 189 A 189

>pdb|4HC8|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase Echa3 (Rv0632c, Nysgrc-019494) From Mycobacterium Tuberculosis H37rv Length = 255

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 90/219 (41%), Gaps = 13/219 (5%)
Query: 13  DGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
           D +A+I+  +  VNAL       L    + A  RDDV A+V+TGNG  FSGGFD+    K
Sbjct: 13  DSIAVISXDDGKVNALGPAXQQALNAAIDNA-DRDDVGALVITGNGRVFSGGFDL----K 67
Query: 73  VHGAGDVSLMPDV---SVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKT 129
           +  +G+V    D      EL   L+   K  +                 G H R+AA   
Sbjct: 68  ILTSGEVQPAIDXLRGGFELAYRLLSYPKPVVXACTGHAIAXGAFLLSCGDH-RVAAHAY 126
Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
            +   E+ +G    +   +     +  S   +   L+K+   E     G ID +   E +
Sbjct: 127 NIQANEVAIGXTIPYAALEIXKLRLTRSAYQQATGLAKTFFGETALAAGFIDEIALPEVV 186
Query: 190 LKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLK 228
           +  +   A + A   +      H   KL S ++A   ++
Sbjct: 187 VSRAEEAAREFAGLNQ----HAHAATKLRSRADALTAIR 221

>pdb|3SWX|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 81/203 (39%), Gaps = 6/203 (2%)
Query: 7   TMEVGNDGVAIITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           T+ +  DG  ++  +N P   NA    ++  L     E  +  D++A VL G G  F+ G
Sbjct: 10  TLRIRRDGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAG 69
Query: 65  FDI-NVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHAR 123
            D+ +V  ++ G    SL P+  +           KP+                +     
Sbjct: 70  LDLASVAAEIQGG--ASLTPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIV 127
Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           IA         E+  G+ P  G T R PR  G   A+  ML + +  + E  ++G++  +
Sbjct: 128 IADETATFAQLEVNRGIYPFGGATIRFPRTAGWGNAMRWMLTADTFDAVEAHRIGIVQEI 187
Query: 184 VTSEELLKVSRLWALDIAARRKP 206
           V   E +  +   A  I AR+ P
Sbjct: 188 VPVGEHVDTAIAIAQTI-ARQAP 209

>pdb|3R9S|A Chain A, Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Avium 104 Length = 267

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 75/181 (41%), Gaps = 19/181 (10%)
Query: 15  VAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDI----- 67
           V +IT+  P   NA+   +  G+ D  EEA    +V+A+VLTG G + F  G D+     
Sbjct: 19  VMVITINRPEARNAVNAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIAR 78
Query: 68  --NVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
             N++   H        P+      V    D  KP                 +     +A
Sbjct: 79  RENLYHPDH--------PEWGFAGYVRHFID--KPTIAAVNGTALGGGTELALASDLVVA 128
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
             + Q GLPE+  G+I   GG  R+   +    A+ ++L  + +++      GLI+ VV 
Sbjct: 129 DERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGLINEVVE 188
Query: 186 S 186
           +
Sbjct: 189 A 189

>pdb|3QMJ|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 From Mycobacterium Marinum Length = 256

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 84/200 (42%), Gaps = 3/200 (1%)
Query: 6   VTMEVGNDG-VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           VT+++ +D  V  +TL  P  +NA    +         +A     V  ++LTG+G  FS 
Sbjct: 6   VTLQIDDDNRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSA 65
Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHAR 123
           G D+   Q      + S         ++  +    KP+                      
Sbjct: 66  GTDLAEMQARITDPNFS-EGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLA 124
Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
             +   +L  P  +LGV P    +  LP+LVG   A  +++ S+ I +EE  ++GL+  +
Sbjct: 125 FMSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQNAAWLLMSSEWIDAEEALRMGLVWRI 184
Query: 184 VTSEELLKVSRLWALDIAAR 203
            + EELL  +R  A  +AA+
Sbjct: 185 CSPEELLPEARRHAEILAAK 204

>pdb|2VRE|A Chain A, Crystal Structure Of Human Peroxisomal Delta3,5, Delta2,4-Dienoyl Coa Isomerase Length = 296

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 11/157 (7%)
Query: 45  SRD-DVKAIVLTGNGGRFSGGFDI-----NVFQ-KVHGAGDVS-LMPDV--SVELVVNLI 94
           SRD D +A+V++G G  F+ G D+     ++ Q K      +S  + D+    +   N+I
Sbjct: 71  SRDADCRAVVISGAGKMFTAGIDLMDMASDILQPKGDDVARISWYLRDIITRYQETFNVI 130
Query: 95  EDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV 154
           E C KP+                  C  R  A      + E+ +G+    G  QRLP+++
Sbjct: 131 ERCPKPVIAAVHGGCIGGGVDLVTACDIRYCAQDAFFQVKEVDVGLAADVGTLQRLPKVI 190
Query: 155 GLSKAI-EMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
           G    + E+   ++ + ++E    GL+  V   +E++
Sbjct: 191 GNQSLVNELAFTARKMMADEALGSGLVSRVFPDKEVM 227

>pdb|1WZ8|A Chain A, Crystal Structure Of Probable Enoyl-Coa Dehydratase From Thermus Thermophilus Hb8 Length = 264

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 4/190 (2%)
Query: 14  GVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV 73
           GV  IT     +NA+   +  GL   + +  + + V+A++L G GG FS G    + +++
Sbjct: 20  GVLEITFRGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEM 79
Query: 74  HGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGL 133
             + +  L        +V    +  +P+                +     +    T+L  
Sbjct: 80  RASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLD 139
Query: 134 PELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVS 193
             L LGV  G       P LVG++KA   +LL++ +T EE  +LGL+   V  E++ +  
Sbjct: 140 GHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGLVALAVEDEKVYEK- 198
Query: 194 RLWALDIAAR 203
              AL++A R
Sbjct: 199 ---ALEVAER 205

>pdb|3LKE|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Halodurans Length = 263

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
           + C  RIA  + +       +G+ P  G +  LPR++G  + + ++L  K  TSEE  +L
Sbjct: 121 LACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIGYEQTMNLLLEGKLFTSEEALRL 180
Query: 178 GLIDAVVTSEELLK 191
           GLI  +  +++ L+
Sbjct: 181 GLIQEICENKQELQ 194

>pdb|3L3S|A Chain A, Crystal Structure Of An Enoyl-Coa HydrotaseISOMERASE FAMILY Protein From Silicibacter Pomeroyi Length = 263

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 79/213 (37%), Gaps = 21/213 (9%)
Query: 9   EVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDIN 68
           EV ++GV  +TL   P + L+   +A L D    A   D V  +V+ G G  F  G D+ 
Sbjct: 11  EVLSEGVLTLTLGRAPAHPLSRAXIAALHDALRRAXGDDHVHVLVIHGPGRIFCAGHDLK 70
Query: 69  VFQKVHGAGDVSLMPDVSVELVVNLIE----------DCKKPIXXXXXXXXXXXXXXXXM 118
              + H A      PD     V +L E           C KP                  
Sbjct: 71  EIGR-HRAD-----PDEGRAFVTDLFEACSALXLDLAHCPKPTIALVEGIATAAGLQLXA 124
Query: 119 GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLP--RLVGLSKAIEMMLLSKSITSEEGWK 176
            C    A+P  +  LP +  G   GF  T  +   R++G     E  L   +  ++    
Sbjct: 125 ACDLAYASPAARFCLPGVQNG---GFXTTPAVAVSRVIGRRAVTEXALTGATYDADWALA 181
Query: 177 LGLIDAVVTSEELLKVSRLWALDIAARRKPWIR 209
            GLI+ ++    L       A  +AAR +  +R
Sbjct: 182 AGLINRILPEAALATHVADLAGALAARNQAPLR 214

>pdb|3F3S|A Chain A, The Crystal Structure Of Human Lambda-Crystallin, Cryl1 Length = 313

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 100/248 (40%), Gaps = 12/248 (4%)
Query: 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD-KA 369
           V ++G G++G   A         V L ++  + +   ++ I   ++ L   G L      
Sbjct: 6   VVIVGSGVIGRSWAMLFASGGFQVKLYDIEQQQIRNALENIRKEMKLLEQAGSLKGSLSV 65
Query: 370 NNALKMLKGVLDYSEFKDVDMVI-EAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 428
              L ++ G  +  E  +  M I E V E + LK+KIF++L+       IL+++TS +  
Sbjct: 66  EEQLSLISGCPNIQEAVEGAMHIQECVPEDLELKKKIFAQLDSIIDDRVILSSSTSCLMP 125
Query: 429 NIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV---RTERTSAQVILDLMTXXXXXXXXXXX 485
           + +        + I AH  +P + +PL+E+V    T  T+      LM            
Sbjct: 126 SKLFAGLVHVKQCIVAHPVNPPYYIPLVELVPHPETAPTTVDRTHALMK--KIGQCPMRV 183
Query: 486 XXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLP-----IGPFQLLDLAGY 540
                GF +NR  +     A  LV  G+        + S GL      IGP + + L   
Sbjct: 184 QKEVAGFVLNRLQYAIISEAWRLVEEGIVSPSDLDLVMSEGLGMRYAFIGPLETMHLNAE 243
Query: 541 GVAAATSK 548
           G+ +   +
Sbjct: 244 GMLSYCDR 251

>pdb|2A7K|A Chain A, Carboxymethylproline Synthase (carb) From Pectobacterium Carotovora, Apo Enzyme Length = 250

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 97/244 (39%), Gaps = 22/244 (9%)
Query: 6   VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSG 63
           +  E  +D V +ITL +P   N  +  +   +KD    A + D V+A+V+ G   R FS 
Sbjct: 1   MVFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSA 60
Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHAR 123
           G D N  +++  + D+    D  ++L   ++ +  KP                 +    R
Sbjct: 61  GGDFNEVKQLSRSEDIEEWIDRVIDLYQAVL-NVNKPTIAAVDGYAIGMGFQFALMFDQR 119
Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           + A      +PEL  G+    G    L    G S   E++   +S+ +       L++ V
Sbjct: 120 LMASTANFVMPELKHGIGCSVGAA-ILGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQV 178
Query: 184 VTSEELLKVSRLWALDIA------------ARRKPWIRSLHRTDKLGSLSEAREVLKLAR 231
           V S  LL  +   A  +A            A  KP+I  L +T       +A + +  A 
Sbjct: 179 VESSALLDAAITQAHVMASYPASAFINTKRAVNKPFIHLLEQT------RDASKAVHKAA 232
Query: 232 LQAK 235
            QA+
Sbjct: 233 FQAR 236

>pdb|3HE2|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 264

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 71/176 (40%), Gaps = 12/176 (6%)
Query: 26  NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85
           NAL   +V  L     +A      +AIVLTG G  F  G D++      G    +  PD 
Sbjct: 43  NALNSQLVEELTQAIRKAGD-GSARAIVLTGQGTAFCAGADLS------GDAFAADYPDR 95
Query: 86  SVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFG 145
            +EL    ++    P+                M C  R+ AP      P    G+     
Sbjct: 96  LIELH-KAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNW 154
Query: 146 GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIA 201
             +RL  LVG  +A  M+L ++ +T+E     G+ + + T    L  ++ WA +IA
Sbjct: 155 SIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGT----LADAQAWAAEIA 206

>pdb|3OC7|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase From Mycobacterium Avium Length = 267

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 77/182 (42%), Gaps = 13/182 (7%)
Query: 15  VAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV 73
           VA +TL +P   NAL+  +V+ L     +A+S   V+ +VL   GG F  G D++   + 
Sbjct: 21  VARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLS---EA 77
Query: 74  HGAGDVSLMPDVSVE------LVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
              G  S   D++VE       ++  I + + P+                  C   +A P
Sbjct: 78  GSGGSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGP 137
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
           ++   L E  +GV P       LP+L   + A    L  +   +    ++GLI   + +E
Sbjct: 138 RSSFALTEARIGVAPAIISLTLLPKLSARAAA-RYYLTGEKFDARRAEEIGLI--TMAAE 194
Query: 188 EL 189
           +L
Sbjct: 195 DL 196

>pdb|3R6H|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase (Echa3) From Mycobacterium Marinum Length = 233

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 87/217 (40%), Gaps = 7/217 (3%)
Query: 12  NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           +D + +I + +  VN L   +   L +  + A  RD+V A+V+ GN   FSGGFD+ V  
Sbjct: 12  DDAIGVIRMDDGKVNVLGPTMQQALNEAID-AADRDNVGALVIAGNHRVFSGGFDLKVLT 70
Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQL 131
                  + ++     EL   L+   K  +                 G H R+AA    +
Sbjct: 71  SGEAKPAIDMLRG-GFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDH-RVAAHAYNV 128
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
              E+ +G+   +   + L   +  S   +   L+K+   E     G ID +   E +L 
Sbjct: 129 QANEVAIGMTIPYAAMEVLKLRLTPSAYQQAAGLAKTFFGETALAAGFIDEISLPEVVLS 188
Query: 192 VSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLK 228
            +   A + A   +      H   KL + +EA + ++
Sbjct: 189 RAEEAAREFAGLNQ----QAHNATKLRARAEALKAIR 221

>pdb|1DCI|A Chain A, Dienoyl-Coa Isomerase Length = 275

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 80/194 (41%), Gaps = 21/194 (10%)
Query: 26  NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMP-- 83
           NA+       L + F++ +   D +A+V++G G  F+ G D+     +  A D+   P  
Sbjct: 26  NAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDL-----MDMASDILQPPGD 80
Query: 84  DVS------------VELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQL 131
           DV+             +    +IE C KP+                  C  R        
Sbjct: 81  DVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFF 140
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAI-EMMLLSKSITSEEGWKLGLIDAVVTSEE-L 189
            + E+ +G+    G  QRLP+++G    + E+   ++ + ++E    GL+  V   ++ +
Sbjct: 141 QVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVM 200
Query: 190 LKVSRLWALDIAAR 203
           L  +   A DI+++
Sbjct: 201 LNAAFALAADISSK 214

>pdb|1UIY|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Thermus Thermophilus Hb8 Length = 253

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 87/198 (43%), Gaps = 5/198 (2%)
Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           V +E G+  VA++ L +P   N L+      L    ++  +   V+A+VLTG G  FS G
Sbjct: 2   VQVEKGH--VAVVFLNDPERRNPLSPEXALSLLQALDDLEADPGVRAVVLTGRGKAFSAG 59
Query: 65  FDINVFQKVHGAG-DVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHAR 123
            D+   ++V   G + +    +S+  + + +    KP                 + C   
Sbjct: 60  ADLAFLERVTELGAEENYRHSLSLXRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLV 119
Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           +   + +LG  E+ +G +        L R VG   A +++L  + + + E   LGL++ +
Sbjct: 120 VXDEEARLGYTEVKIGFVAALVSVI-LVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRI 178
Query: 184 VTSEELLKVSRLWALDIA 201
               + L+ ++  A ++A
Sbjct: 179 APPGKALEEAKALAEEVA 196

>pdb|3OME|A Chain A, Crystal Structure Of A Probable Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 282

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 81/203 (39%), Gaps = 26/203 (12%)
Query: 13  DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           D +A ITL  P   NA    ++  L   +  A   ++VK I+L  NG  FS G D+    
Sbjct: 31  DSIATITLNRPEAANAQNPELLDELDAAWTRAAEDNEVKVIILRANGKHFSAGHDLR--- 87
Query: 72  KVHGAGDVSLMPDVSVELVVN-----------LIEDCKKPIXXXXXXXXXXXXXXXXMGC 120
              G G+V     +S+E ++               +  KP                   C
Sbjct: 88  ---GGGEVP--EKISLEFIIQHEARRYLDYTLRWRNVPKPSIAAVQGRCISGGLLLCWPC 142
Query: 121 HARIAAPKTQLGLPELTLGV--IPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 178
              +A+       P   +G+  +   G T  L    G  KA E++   +++T+EE  + G
Sbjct: 143 DLILASDDALFSDPVALMGIGGVEYHGHTWEL----GPRKAKEILFTGRALTAEEAERTG 198
Query: 179 LIDAVVTSEELLKVSRLWALDIA 201
           +++ VV  +EL   +R  A  IA
Sbjct: 199 MVNRVVARDELDAQTRELAEQIA 221

>pdb|3H0U|A Chain A, Crystal Structure Of A Putative Enoyl-Coa Hydratase From Streptomyces Avermitilis Length = 289

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 118 MGCHARIAAPKTQ-LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 176
           + C  R A+ +   LG PE+ +G  PG G  Q L RL+G  +A+E +L S    ++   +
Sbjct: 123 LACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRLLGRGRALEAVLTSSDFDADLAER 182
Query: 177 LGLIDAVVTSEEL 189
            G ++  V   EL
Sbjct: 183 YGWVNRAVPDAEL 195

>pdb|2FBM|A Chain A, Acetyltransferase Domain Of Cdy1 Length = 291

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 68/177 (38%), Gaps = 8/177 (4%)
Query: 26  NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK--VHGAGDVSLMP 83
           NAL   ++  + +    A + DD K ++ +  G  F  G D   F K   +     SL  
Sbjct: 46  NALNTEVIKEIVNALNSAAA-DDSKLVLFSAAGSVFCCGLDFGYFVKHLRNNRNTASLEM 104
Query: 84  DVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPG 143
             +++  VN     KKPI                  C    A  K     P  T G  P 
Sbjct: 105 VDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPD 164
Query: 144 FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV-----VTSEELLKVSRL 195
              +   P+++G + A EM++  + +T+ E    GL+  V      T E ++++  L
Sbjct: 165 GCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKEL 221

>pdb|1EF8|A Chain A, Crystal Structure Of Methylmalonyl Coa Decarboxylase Length = 261

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 6/181 (3%)
Query: 25  VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR--FSGGFDINVFQKVHGAGDVSLM 82
           +NAL+   +  L     +  +R +++ I+L    G   FS G DI+   ++   G   L 
Sbjct: 25  LNALSKVFIDDLMQALSD-LNRPEIRCIILRAPSGSKVFSAGHDIH---ELPSGGRDPLS 80
Query: 83  PDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIP 142
            D  +  +  +I+   KPI                M     IAA  +   +  + LGV  
Sbjct: 81  YDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPY 140
Query: 143 GFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA 202
              G   L R  G     E++  +  IT++    +G+++ VV  EEL   +   A  I+ 
Sbjct: 141 NLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISE 200
Query: 203 R 203
           +
Sbjct: 201 K 201

>pdb|1XX4|A Chain A, Crystal Structure Of Rat Mitochondrial 3,2-Enoyl-Coa Length = 261

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 76/190 (40%), Gaps = 11/190 (5%)
Query: 11  GNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINV 69
           G  G+A++   NPPVN+L++  +       E+  +   ++ ++LT    G FS G D+  
Sbjct: 12  GEAGIAVMKFKNPPVNSLSLEFLTEFVISLEKLENDKSIRGVILTSERPGIFSAGLDLME 71
Query: 70  F---QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAA 126
                  H A     + ++ + L ++ +      +                + C  RI A
Sbjct: 72  MYGRNPAHYAEYWKAVQELWLRLYLSNL-----TLISAINGASPAGGCLMALTCDYRIMA 126
Query: 127 --PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV 184
              K  +GL E  LG++  F         +G   A   + L       E  K+GL+D VV
Sbjct: 127 DNSKYTIGLNESLLGIVAPFWLKDNYVNTIGHRAAERALQLGTLFPPAEALKVGLVDEVV 186
Query: 185 TSEELLKVSR 194
             +++   +R
Sbjct: 187 PEDQVHSKAR 196

>pdb|3I47|A Chain A, Crystal Structure Of Putative Enoyl Coa HydrataseISOMERASE (Crotonase) From Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1 Length = 268

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 75/180 (41%), Gaps = 8/180 (4%)
Query: 26  NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85
           NA    ++  ++ + + A +  +V+ IVL  NG  FS G D+   Q +    +   + D 
Sbjct: 26  NAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANFTEEENLEDS 85
Query: 86  SVELVVNL---IEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIP 142
            V  + NL   I    KP                   C   IA+   +    E+ LG+IP
Sbjct: 86  LV--LGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIP 143
Query: 143 GFGGTQRLPRLVGLSKAIEMMLLSKSI-TSEEGWKLGLIDAVVTSEELLKVSRLWALDIA 201
               +  + R +G  +A +M+ +S  +  +   + L L+   V  + LL+ +  +A  I+
Sbjct: 144 AV-ISPYVVRAIG-ERAAKMLFMSAEVFDATRAYSLNLVQHCVPDDTLLEFTLKYASQIS 201

>pdb|2FW2|A Chain A, Catalytic Domain Of Cdy Length = 260

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 69/178 (38%), Gaps = 10/178 (5%)
Query: 26  NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD---VSLM 82
           NAL   ++  + +    A + DD K ++ +  G  F  G D   F + H   D    SL 
Sbjct: 27  NALNTEVIKEMVNALNSAAA-DDSKLVLFSAAGSVFCCGLDFGYFVR-HLRNDRNTASLE 84
Query: 83  PDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIP 142
              +++  VN     KKPI                  C    A  K     P  T G  P
Sbjct: 85  MVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSP 144
Query: 143 GFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV-----VTSEELLKVSRL 195
               +   P+++G + A EM++  + +T+ E    GL+  V      T E ++++  L
Sbjct: 145 DGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKEL 202

>pdb|3BPT|A Chain A, Crystal Structure Of Human Beta-Hydroxyisobutyryl-Coa Hydrolase In Complex With Quercetin Length = 363

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 80/202 (39%), Gaps = 11/202 (5%)
Query: 10  VGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFD 66
           +G  G   +  +N P  +NAL +  +  +  + ++     +   I++ G GG+ F  G D
Sbjct: 10  LGKKGCTGVITLNRPKFLNALTLNXIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGD 69
Query: 67  INVFQKVHGAGDVSLMPDVSVE--LVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARI 124
           I V  +   A    + P    E   + N +  C+KP                 +    R+
Sbjct: 70  IRVISEAEKAKQ-KIAPVFFREEYXLNNAVGSCQKPYVALIHGITXGGGVGLSVHGQFRV 128
Query: 125 AAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV 184
           A  K     PE  +G+ P  GG   LPRL G      + L    +   + ++ G+    V
Sbjct: 129 ATEKCLFAXPETAIGLFPDVGGGYFLPRLQG-KLGYFLALTGFRLKGRDVYRAGIATHFV 187
Query: 185 TSEELLKVSRLWALDIAARRKP 206
            SE+L  +      D+ A + P
Sbjct: 188 DSEKLAXLEE----DLLALKSP 205

>pdb|2VSU|C Chain C, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 275

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 76/185 (41%), Gaps = 4/185 (2%)
Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DG+A + L  P   NA++  +   + D  E          +VLTG G  ++ G D+  + 
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYF 76
Query: 72  KVHGAGDVSLMPDVSVE---LVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPK 128
           +   AG   L   +  E       L+    KP                 + C   I A +
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAICADE 136
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
              GL E+  G+ PG   ++ +   VG  +++  ++  K+   ++  ++GL++  V   +
Sbjct: 137 ATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVPLAQ 196
Query: 189 LLKVS 193
           L +V+
Sbjct: 197 LREVT 201

>pdb|2VSU|A Chain A, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism. Length = 276

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 76/185 (41%), Gaps = 4/185 (2%)
Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DG+A + L  P   NA++  +   + D  E          +VLTG G  ++ G D+  + 
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYF 76
Query: 72  KVHGAGDVSLMPDVSVE---LVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPK 128
           +   AG   L   +  E       L+    KP                 + C   I A +
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAICADE 136
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
              GL E+  G+ PG   ++ +   VG  +++  ++  K+   ++  ++GL++  V   +
Sbjct: 137 ATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVPLAQ 196
Query: 189 LLKVS 193
           L +V+
Sbjct: 197 LREVT 201

>pdb|2J5I|I Chain I, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 76/185 (41%), Gaps = 4/185 (2%)
Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DG+A + L  P   NA++  +   + D  E          +VLTG G  ++ G D+  + 
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYF 76
Query: 72  KVHGAGDVSLMPDVSVE---LVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPK 128
           +   AG   L   +  E       L+    KP                 + C   I A +
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADE 136
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
              GL E+  G+ PG   ++ +   VG  +++  ++  K+   ++  ++GL++  V   +
Sbjct: 137 ATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVPLAQ 196
Query: 189 LLKVS 193
           L +V+
Sbjct: 197 LREVT 201

>pdb|2VSS|F Chain F, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 76/185 (41%), Gaps = 4/185 (2%)
Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DG+A + L  P   NA++  +   + D  E          +VLTG G  ++ G D+  + 
Sbjct: 17  DGIAFVILNRPERRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYF 76
Query: 72  KVHGAGDVSLMPDVSVE---LVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPK 128
           +   AG   L   +  E       L+    KP                 + C   I A +
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADE 136
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
              GL E+  G+ PG   ++ +   VG  +++  ++  K+   ++  ++GL++  V   +
Sbjct: 137 ATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVPLAQ 196
Query: 189 LLKVS 193
           L +V+
Sbjct: 197 LREVT 201

>pdb|2VSU|F Chain F, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 76/185 (41%), Gaps = 4/185 (2%)
Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DG+A + L  P   NA++  +   + D  E          +VLTG G  ++ G D+  + 
Sbjct: 17  DGIAFVILNRPERRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYF 76
Query: 72  KVHGAGDVSLMPDVSVE---LVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPK 128
           +   AG   L   +  E       L+    KP                 + C   I A +
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAICADE 136
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
              GL E+  G+ PG   ++ +   VG  +++  ++  K+   ++  ++GL++  V   +
Sbjct: 137 ATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVPLAQ 196
Query: 189 LLKVS 193
           L +V+
Sbjct: 197 LREVT 201

>pdb|2VSS|E Chain E, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 76/185 (41%), Gaps = 4/185 (2%)
Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DG+A + L  P   NA++  +   + D  E          +VLTG G  ++ G D+  + 
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYF 76
Query: 72  KVHGAGDVSLMPDVSVE---LVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPK 128
           +   AG   L   +  E       L+    KP                 + C   I A +
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADE 136
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
              GL E+  G+ PG   ++ +   VG  +++  ++  K+   ++  ++GL++  V   +
Sbjct: 137 ATFGLSEINYGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVPLAQ 196
Query: 189 LLKVS 193
           L +V+
Sbjct: 197 LREVT 201

>pdb|2J5I|B Chain B, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 76/185 (41%), Gaps = 4/185 (2%)
Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DG+A + L  P   NA++  +   + D  E          +VLTG G  ++ G D+  + 
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYF 76
Query: 72  KVHGAGDVSLMPDVSVE---LVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPK 128
           +   AG   L   +  E       L+    KP                 + C   I A +
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADE 136
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
              GL E+  G+ PG   ++ +   VG  +++  ++  K+   ++  ++GL++  V   +
Sbjct: 137 ATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVPLAQ 196
Query: 189 LLKVS 193
           L +V+
Sbjct: 197 LREVT 201

>pdb|2VSU|E Chain E, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 76/185 (41%), Gaps = 4/185 (2%)
Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DG+A + L  P   NA++  +   + D  E          +VLTG G  ++ G D+  + 
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYF 76
Query: 72  KVHGAGDVSLMPDVSVE---LVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPK 128
           +   AG   L   +  E       L+    KP                 + C   I A +
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAICADE 136
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
              GL E+  G+ PG   ++ +   VG  +++  ++  K+   ++  ++GL++  V   +
Sbjct: 137 ATFGLSEINYGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVPLAQ 196
Query: 189 LLKVS 193
           L +V+
Sbjct: 197 LREVT 201

>pdb|4HDT|A Chain A, Crystal Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Thermoresistibile Length = 353

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 78/187 (41%), Gaps = 10/187 (5%)
Query: 14  GVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR--FSGGFDINVF 70
           GV ++TL  P  +N+L   +V  + ++     + D V+A++LTG G R   +GG  + ++
Sbjct: 18  GVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIY 77
Query: 71  Q--KVHGAGDVSLMPDVSVELVVNL-IEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
              K  GA       D   E  +N  I    KP                    + R+   
Sbjct: 78  HSAKADGAEARRFWFD---EYRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTD 134
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
            T++ +PE+ +G IP  GGT  L R  G    +   L     +  +   +G  D  V  +
Sbjct: 135 TTKMAMPEVGIGFIPDVGGTYLLSRAPG-KLGLHAALTGAPFSGADAIVMGFADHYVPHD 193
Query: 188 ELLKVSR 194
           ++ + +R
Sbjct: 194 KIDEFTR 200

>pdb|2J5I|A Chain A, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 76/185 (41%), Gaps = 4/185 (2%)
Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DG+A + L  P   NA++  +   + D  E          +VLTG G  ++ G D+  + 
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYF 76
Query: 72  KVHGAGDVSLMPDVSVE---LVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPK 128
           +   AG   L   +  E       L+    KP                 + C   I A +
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADE 136
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
              GL E+  G+ PG   ++ +   VG  +++  ++  K+   ++  ++GL++  V   +
Sbjct: 137 ATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTFGGQKAAEMGLVNESVPLAQ 196
Query: 189 LLKVS 193
           L +V+
Sbjct: 197 LREVT 201

>pdb|3GKB|A Chain A, Crystal Structure Of A Putative Enoyl-coa Hydratase From Streptomyces Avermitilis Length = 287

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 5/194 (2%)
Query: 14  GVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFS-GGFDINVFQK 72
           GVA I L NPPVN +   ++  L+           V+ IV +     F     D+ + +K
Sbjct: 18  GVARIILDNPPVNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEK 77
Query: 73  VHGAGDV--SLMPDVSV-ELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKT 129
           +    ++  S   DV+V + V  LI    +                         AA +T
Sbjct: 78  MDALQELAASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAET 137
Query: 130 Q-LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
             LG  E  +G+IPG GGTQ L   VG ++A+E++L +    +E     G I+  + ++E
Sbjct: 138 AGLGQIEALMGIIPGGGGTQYLRGRVGRNRALEVVLTADLFDAETAASYGWINRALPADE 197
Query: 189 LLKVSRLWALDIAA 202
           L +     A +IAA
Sbjct: 198 LDEYVDRVARNIAA 211

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	725
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	0.0
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	0.0
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	0.0
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	0.0
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	1e-171
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	9e-79
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	7e-24
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	1e-06
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	3e-04
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	1e-75
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	1e-04
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	1e-66
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	5e-05
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	3e-64
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	5e-64
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	2e-63
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	9e-63
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	1e-62
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	2e-62
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	2e-62
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	1e-60
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	4e-60
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	8e-60
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	2e-59
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	3e-59
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	4e-59
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	5e-59
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	6e-59
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	7e-59
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	1e-58
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	1e-58
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	2e-58
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	2e-58
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	3e-58
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	5e-58
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	5e-58
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	7e-58
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	1e-57
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 11251J, struct	1e-57
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	1e-57
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	2e-57
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	2e-57
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	2e-57
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	8e-57
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	1e-56
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	3e-56
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	4e-56
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	2e-55
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	2e-55
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	2e-55
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	4e-55
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	4e-55
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	4e-55
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	6e-55
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	6e-55
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	8e-55
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	3e-54
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	3e-54
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	5e-54
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	7e-54
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	4e-53
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	6e-53
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	6e-53
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	6e-53
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	7e-53
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	7e-53
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	1e-52
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	1e-52
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	2e-51
3t3w_A	279	Probable enoyl-COA hydratase; ssgcid, structural g	1e-50
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	2e-50
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	4e-50
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	2e-49
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	4e-49
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	9e-49
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	7e-48
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	7e-48
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	7e-46
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	1e-45
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	2e-09
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	4e-44
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	2e-43
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	2e-42
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	8e-22
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	2e-21
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
3ctv_A	110	HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura	2e-07
3ctv_A	110	HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura	6e-07
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	1e-04

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725

 Score =  866 bits (2241), Expect = 0.0
 Identities = 423/726 (58%), Positives = 543/726 (74%), Gaps = 5/726 (0%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
               +  MEVG DGVA+ITLINPPVN+L+  ++  LK  +EEA SR+DVKAIV+TG  GR
Sbjct: 4   RTKGKTVMEVGGDGVAVITLINPPVNSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGR 63

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDV-SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
           FSGGFDI+ F ++             S++++ +L+E  +KP VAA++GLALGGGLELAM 
Sbjct: 64  FSGGFDISGFGEMQKGNVKEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMA 123

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
           CHARI+AP  QLGLPEL LGVIPGFGGTQRLPRLVGL+KA+EM+L SK + +EEG  LGL
Sbjct: 124 CHARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGL 183

Query: 180 IDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239
           IDAVV   EL+  +R WALDI  RRKPW+ S+ +TDKL  L EARE+L  A+ Q  K AP
Sbjct: 184 IDAVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLGEAREILTFAKAQTLKRAP 243

Query: 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVT 299
           NM     CLD IE GIV G  +G+ KEA+V  ++V LDT++GL+HVFF+QR T+KVP VT
Sbjct: 244 NMKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVT 303

Query: 300 DIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLV 359
           D GL PR ++KVA+IGGGLMGSGIATA IL+N  V+LKEVN ++L  GI  ++AN++  V
Sbjct: 304 DRGLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRV 363

Query: 360 TRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCIL 419
            +G ++Q+K    + +LKG LDY  F+DVDMVIEAVIE++ LKQ+IF++LEK CP HCIL
Sbjct: 364 RKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCIL 423

Query: 420 ATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKII 479
           A+NTSTIDLN +GE+T SQDRI+GAHFFSPAH+MPLLEIVRT  TSAQVI+DL+ VGK I
Sbjct: 424 ASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKI 483

Query: 480 KKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAG 539
           KK PVVVGNCTGFAVNR FFPY+Q+A  LV  G D + ID AI  FG+P+GPF+L DL G
Sbjct: 484 KKTPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRAISKFGMPMGPFRLCDLVG 543

Query: 540 YGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPI 599
           +GVA AT+ +F + F +R+++S ++ L+ +  R G+A  KG Y Y+   K KPDP +   
Sbjct: 544 FGVAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGFYLYDDKRKAKPDPELKKY 603

Query: 600 IEECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGM 659
           IE+ R +S +    K   +++EK+I+EM  FPVVNE+CRV  EGI V+A+DLD A ++GM
Sbjct: 604 IEKARSISGVKLDPK-LANLSEKDIIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIMGM 662

Query: 660 SFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSS 719
            FP YRGGI+FWAD++G+ Y+Y+ L +WS+ YG FFKP  FL ER +KG+ LSAPV    
Sbjct: 663 GFPPYRGGIMFWADSIGSKYIYSRLDEWSKAYGEFFKPCAFLAERGSKGVLLSAPVKQ-- 720

Query: 720 TSRARL 725
            + +RL
Sbjct: 721 -ASSRL 725

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715

 Score =  812 bits (2099), Expect = 0.0
 Identities = 210/716 (29%), Positives = 344/716 (48%), Gaps = 16/716 (2%)

Query: 1   MAAPRVTMEVGNDGVAIITL--INPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG 58
                +T+     G+  +        VN      +  L+   +   +   VK ++++   
Sbjct: 3   YEGKAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGK 62

Query: 59  GRFSGGFDINVFQKVHGAGDVSLMPDV-SVELVVNLIEDCKKPIVAAVEGLALGGGLELA 117
             F  G DI  F +     D  L+        + +  ED   P VAA+ G+ALGGGLE+ 
Sbjct: 63  DVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMC 122

Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
           +    R+ A   ++GLPE+ LG+ PGFGGT RLPRL+G+  A+E +   K   +E+  K+
Sbjct: 123 LAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKV 182

Query: 178 GLIDAVVTSEELLKVSRLWALDIAARRKPWIR---SLHRTDKLGSLSEAREVLKLARLQA 234
             +DAVVT+++L   +        +    +           KL ++ +           A
Sbjct: 183 SAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKGFVA 242

Query: 235 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294
            +  PN P     +  I++    G    +  EA  F +L     S  L+ +F   +   K
Sbjct: 243 GQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKK 302

Query: 295 VPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEAN 354
              V D     + V++ AV+G G+MG GIA         +++K++N   + +G+      
Sbjct: 303 KAKVYDK--IAKDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKL 360

Query: 355 VRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACP 414
           + G V +G++T  K    L  ++  L Y +F +VD+V+EAV+E+  +KQ + +E+E    
Sbjct: 361 LVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVR 420

Query: 415 PHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMT 474
              ILA+NTSTI ++++ +     +  +G HFF+P H+MPL+E++R E++S   +   + 
Sbjct: 421 EDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVA 480

Query: 475 VGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQL 534
             K + K P+VV +C GF VNR  FPY      LVS GVD  RID  +  FG P+GP  L
Sbjct: 481 YAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYL 540

Query: 535 LDLAGYGVAAATSKEFDKAFPDRSFQ--SPLVDLLLKSGRNGKANGKGLYTYEKGSKPKP 592
           +D+ G            + FPDR        +D L ++ R G+ NGKG Y YE   K K 
Sbjct: 541 MDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALYEAKRLGQKNGKGFYAYEADKKGKQ 600

Query: 593 DPSVLPIIEECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLD 652
              V   + E  +     P       VT+++I+  ++ P+  E+ R LE+GIV  A++ D
Sbjct: 601 KKLVDSSVLEVLK-----PIVYEQRDVTDEDIINWMMIPLCLETVRCLEDGIVETAAEAD 655

Query: 653 DASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKG 708
              V G+ FP +RGG + + D++G         ++++  G  + P+  L E A  G
Sbjct: 656 MGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQYAE-LGALYHPTAKLREMAKNG 710

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742

 Score =  798 bits (2062), Expect = 0.0
 Identities = 235/730 (32%), Positives = 375/730 (51%), Gaps = 43/730 (5%)

Query: 13  DGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
             +A+I L NPPVNA++  ++  +++  ++A S   VKAIV+ G  G F  G DI+ F  
Sbjct: 29  HSLAMIRLCNPPVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSA 88

Query: 73  VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLG 132
                     P +++  +V+ I+  +KP++AA++G+ALGGGLELA+GCH RIA  K ++G
Sbjct: 89  --------FTPGLALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVG 140

Query: 133 LPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKV 192
           LPE+TLG++PG  GTQ LPR+VG+  A++++   K ++++E  +LG++DAVV   + ++ 
Sbjct: 141 LPEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVV-KSDPVEE 199

Query: 193 SRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIE 252
           +  +A  I  +     R       + SL     V   A  + +K  P +   + C+  I+
Sbjct: 200 AIKFAQKIIDKPIEPRRI--FNKPVPSLPNMDSVFAEAIAKVRKQYPGVLAPETCVRSIQ 257

Query: 253 EGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDI---GLKPRGVR 309
             + H    G+ +E K+F  L     ++ L + FFA+++ +K    +         + V 
Sbjct: 258 ASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVS 317

Query: 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKA 369
            V V+G G MG GIA +     I VV  E + + L    K I   +    +R       +
Sbjct: 318 SVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQAS 377

Query: 370 NNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429
             A   L+      E   VD+V+EAV E + LK+K+F+EL   C P   L TNTS ++++
Sbjct: 378 --AKPKLRFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVD 435

Query: 430 IVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC 489
            +   T     +IG HFFSPAHVM LLE++ +  +S   I  +M++ K I K+ VVVGNC
Sbjct: 436 DIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNC 495

Query: 490 TGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKE 549
            GF  NR   PY      L+  G     +D  +  FG  +GPF++ DLAG  V     K 
Sbjct: 496 YGFVGNRMLAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKG 555

Query: 550 FDKAFPD-----------RSFQSPLVDLLLKSGRNGKANGKGLYTYEKGS--KPKPDPSV 596
                P             S  SPL D+L ++GR G+  GKG Y Y+K      KPDP +
Sbjct: 556 QGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWL 615

Query: 597 LPIIEECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASV 656
              + + R             +++++EI+E  L+ ++NE+ R+LEEG+  R   +D   +
Sbjct: 616 STFLSQYRE-----VHHIEQRTISKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYL 670

Query: 657 LGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN--FFKPSRFLEERATKGI----- 709
            G  +P ++GG +F+A +VG   V   L+K+ +   +    +PS +L     +G      
Sbjct: 671 HGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQGSPPLKE 730

Query: 710 --PLSAPVSS 717
              L+ P  S
Sbjct: 731 WQSLAGPHGS 740

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} Length = 463

 Score =  522 bits (1348), Expect = 0.0
 Identities = 145/466 (31%), Positives = 224/466 (48%), Gaps = 32/466 (6%)

Query: 277 DTSRGLVHVFFAQRATSKVPNVTDI---GLKPRGVRKVAVIGGGLMGSGIATAHILNNIY 333
             ++ L + FFA+++ +K    +         + V  V V+G G MG GIA +     I 
Sbjct: 3   GQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGIS 62

Query: 334 VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIE 393
           VV  E + + L    K I   +    +R       +  A   L+      E   VD+V+E
Sbjct: 63  VVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQAS--AKPKLRFSSSTKELSTVDLVVE 120

Query: 394 AVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVM 453
           AV E + LK+K+F+EL   C P   L TNTS ++++ +   T     +IG HFFSPAHVM
Sbjct: 121 AVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVM 180

Query: 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV 513
            LLE++ +  +S   I  +M++ K I K+ VVVGNC GF  NR   PY      L+  G 
Sbjct: 181 RLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGS 240

Query: 514 DVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPD-----------RSFQSP 562
               +D  +  FG  +GPF++ DLAG  V     K      P             S  SP
Sbjct: 241 KPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSP 300

Query: 563 LVDLLLKSGRNGKANGKGLYTYEKGSK--PKPDPSVLPIIEECRRLSNIMPGGKVPISVT 620
           L D+L ++GR G+  GKG Y Y+K      KPDP +   + + R             +++
Sbjct: 301 LGDMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYRE-----VHHIEQRTIS 355

Query: 621 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYV 680
           ++EI+E  L+ ++NE+ R+LEEG+  R   +D   + G  +P ++GG +F+A +VG   V
Sbjct: 356 KEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTV 415

Query: 681 YTSLKKWSQLYGNF--FKPSRFLEERATKGI-------PLSAPVSS 717
              L+K+ +   +    +PS +L     +G         L+ P  S
Sbjct: 416 LEKLQKYYRQNPDIPQLEPSDYLRRLVAQGSPPLKEWQSLAGPHGS 461

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} Length = 460

 Score =  497 bits (1282), Expect = e-171
 Identities = 114/444 (25%), Positives = 197/444 (44%), Gaps = 24/444 (5%)

Query: 275 MLDTSRGLVHVFFAQRATSKVPNV-----TDIGLKPRGVRKVAVIGGGLMGSGIATAHIL 329
           +      +        + +   ++          +   V  VA+IGGG MG  +A    L
Sbjct: 16  LYFQGSEVRSYLMEAHSLAGQWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGL 75

Query: 330 NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389
             I   L   N +   + ++ + A      +  +L   +       LK   D+ +  + D
Sbjct: 76  AGIETFLVVRNEQRCKQELEVMYAR---EKSFKRLNDKRIEKINANLKITSDFHKLSNCD 132

Query: 390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSP 449
           +++E+VIE + LK+++F+ LE  C   CI  TNTS++DLN +         ++G HFF+P
Sbjct: 133 LIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVLRDPSNLVGIHFFNP 192

Query: 450 AHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPY-SQSARLL 508
           A+V+ L+EI+    TS+Q I       + IKK+PV+VGNC  F  NR    Y  QS +L+
Sbjct: 193 ANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGNCKSFVFNRLLHVYFDQSQKLM 252

Query: 509 VSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLL 568
              G    +ID  I +FG  +GP  + D+ G+ V     KE           +P+   + 
Sbjct: 253 YEYGYLPHQIDKIITNFGFLMGPMTVADMNGFDVMEKLKKENGLEP------NPIEKEMW 306

Query: 569 KSGRNGKANGKGLYTYEKGS-KPKPDPSVLPIIEECRRLSNIMPGGKVPISVTEKEIVEM 627
           +  R G+   KG Y Y+  + + + D  +  II    +             + +++++  
Sbjct: 307 RLKRYGRKTNKGFYKYDDKTQRKENDTEMEQIIRRVSQ-----NAKSNIQIINDQDVINF 361

Query: 628 ILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKW 687
           +L+P VNE  R +EEG++   S +D   +LG  +P + GG + +    G + +   L  W
Sbjct: 362 MLYPTVNEGYRCIEEGVISNESLIDIMFILGFGWPIHSGGPMRFGKTEGLDKIANMLVHW 421

Query: 688 SQLYGN---FFKPSRFLEERATKG 708
           S L      +           + G
Sbjct: 422 SSLEPKESAYIVADALKTANVSTG 445

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483

 Score =  259 bits (664), Expect = 9e-79
 Identities = 104/302 (34%), Positives = 154/302 (50%), Gaps = 4/302 (1%)

Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V+ VAVIG G MG+GIA     +   V+L ++++E L + I  I A +   VTRGKLT +
Sbjct: 5   VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAE 64

Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
                LK L  V D       D+VIEA  E + +K+ +F++L + CPP  +L TNTS+I 
Sbjct: 65  TCERTLKRLIPVTDIHALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSIS 124

Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
           +  +  +  + +R+ G HFF+PA VM L+E+V    T+A+V+  L  +     K PV   
Sbjct: 125 ITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCH 184

Query: 488 NCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQLLDLAGYGVAAA 545
           +  GF VNR   PY   A   +   V     ID+A+R   G P+GP +L DL G  V  A
Sbjct: 185 STPGFIVNRVARPYYSEAWRALEEQVAAPEVIDAALRDGAGFPMGPLELTDLIGQDVNFA 244

Query: 546 TSKEFDKAFP-DRSFQ-SPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEEC 603
            +     AF  +R F  S +   L+  GR GK +G G+Y +    +       +      
Sbjct: 245 VTCSVFNAFWQERRFLPSLVQQELVIGGRLGKKSGLGVYDWRAEREAVVGLEAVSDSFSP 304

Query: 604 RR 605
            +
Sbjct: 305 MK 306

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483

 Score =  104 bits (262), Expect = 7e-24
 Identities = 30/214 (14%), Positives = 66/214 (30%), Gaps = 16/214 (7%)

Query: 377 KGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS 436
            GV D+   ++  + +EA +       K+  + +       +L   T       +  + +
Sbjct: 280 LGVYDWRAEREAVVGLEA-VSDSFSPMKVEKKSDGVTEIDDVLLIETQGETAQALAIRLA 338

Query: 437 SQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNR 496
               +I            ++ I              +   +   K  + + +  G  + R
Sbjct: 339 RPVVVIDKMA------GKVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQIADYPGMLIWR 392

Query: 497 AFFPYSQSARLLVSLGV-DVFRIDSAIRS-FGLPIGPFQLLDLAGYGVAAATSKEFDKAF 554
                   A   +  GV     ID+A+R     P GP       G+       +     +
Sbjct: 393 TVAMIINEALDALQKGVASEQDIDTAMRLGVNYPYGPLAWGAQLGWQRILRLLENLQHHY 452

Query: 555 PDRSFQ-SPLV--DLLLKSGRNGKANGKGLYTYE 585
            +  ++   L+    LL+SG       +G + + 
Sbjct: 453 GEERYRPCSLLRQRALLESGY----ESEGHHHHH 482

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 7/96 (7%)

Query: 613 GKVPISVTEKE--IVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVF 670
           GK  + + +    ++   +  ++NE+   L++G V    D+D A  LG+++P    G + 
Sbjct: 376 GKTVLQIADYPGMLIWRTVAMIINEALDALQKG-VASEQDIDTAMRLGVNYPY---GPLA 431

Query: 671 WADAVGANYVYTSLKKWSQLYGNF-FKPSRFLEERA 705
           W   +G   +   L+     YG   ++P   L +RA
Sbjct: 432 WGAQLGWQRILRLLENLQHHYGEERYRPCSLLRQRA 467

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 613 GKVPISVTEKE--IVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFP 662
           GK P+        IV  +  P  +E+ R LEE  V     +D A   G  FP
Sbjct: 177 GKQPVRCHSTPGFIVNRVARPYYSEAWRALEEQ-VAAPEVIDAALRDGAGFP 227

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* Length = 302

 Score =  244 bits (626), Expect = 1e-75
 Identities = 94/292 (32%), Positives = 143/292 (48%), Gaps = 10/292 (3%)

Query: 304 KPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRG- 362
           K   V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +  
Sbjct: 11  KKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKF 70

Query: 363 ----KLTQDKANNALKMLKGVLDYSEF-KDVDMVIEAVIESVPLKQKIFSELEKACPPHC 417
               K   +     L  +    D +      D+V+EA++E++ +K ++F  L+K    H 
Sbjct: 71  AENPKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHT 130

Query: 418 ILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGK 477
           I A+NTS++ +  +   T+ QDR  G HFF+P  VM L+E+++T  TS +    L+   K
Sbjct: 131 IFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSK 190

Query: 478 IIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQLL 535
            + K PV   +  GF VNR   PY   A  L   G      ID+A++   G P+GPF+LL
Sbjct: 191 ALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELL 250

Query: 536 DLAGYGVAAATSKE-FDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTYE 585
           D  G            +    +   Q SP ++ L+   + GK  G+G Y Y+
Sbjct: 251 DYVGLDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 302

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* Length = 302

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 613 GKVPISVTEKE--IVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFP 662
           GK P+S  +    IV  +L P + E+ R+ E G      D+D A  LG  +P
Sbjct: 193 GKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYP 243

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} Length = 293

 Score =  220 bits (564), Expect = 1e-66
 Identities = 85/309 (27%), Positives = 133/309 (43%), Gaps = 27/309 (8%)

Query: 299 TDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGL 358
           +D         KV VIG GLMG GIA A I +   VVL++V+ + L    + I   +   
Sbjct: 3   SDKIHHHHHHMKVFVIGAGLMGRGIAIA-IASKHEVVLQDVSEKALEAAREQIPEEL--- 58

Query: 359 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCI 418
                         L  ++      + KD D+V+EAV E +  K ++  E+E+    +  
Sbjct: 59  --------------LSKIEFTTTLEKVKDCDIVMEAVFEDLNTKVEVLREVERLT--NAP 102

Query: 419 LATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKI 478
           L +NTS I ++ + E+  S  R +G H+ +P HVMPL+EIV +  T ++ +  +    + 
Sbjct: 103 LCSNTSVISVDDIAERLDSPSRFLGVHWMNPPHVMPLVEIVISRFTDSKTVAFVEGFLRE 162

Query: 479 IKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIR-SFGL---PIGPFQL 534
           + K  VV        VNR        A  ++  GV    +D   +   GL     GP   
Sbjct: 163 LGKEVVVCKG--QSLVNRFNAAVLSEASRMIEEGVRAEDVDRVWKHHLGLLYTLFGPLGN 220

Query: 535 LDLAGYGVAAATSKEFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPD 593
           LD  G  VA   S    K F D  F+    +   +K G  G   GKG+Y Y   +  +  
Sbjct: 221 LDYIGLDVAYYASLYLYKRFGDEKFKPPEWLQEKIKKGEVGVKAGKGIYEYGPKAYEERV 280

Query: 594 PSVLPIIEE 602
             +  ++  
Sbjct: 281 ERLKKLLRF 289

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} Length = 293

 Score = 44.9 bits (107), Expect = 5e-05
 Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 7/99 (7%)

Query: 613 GKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDA--SVLGMSFPSYRGGIVF 670
           GK  +    + +V      V++E+ R++EEG  VRA D+D      LG+ +     G + 
Sbjct: 164 GKEVVVCKGQSLVNRFNAAVLSEASRMIEEG--VRAEDVDRVWKHHLGLLYT--LFGPLG 219

Query: 671 WADAVGANYVYTSLKKWSQLYGN-FFKPSRFLEERATKG 708
             D +G +  Y +     + +G+  FKP  +L+E+  KG
Sbjct: 220 NLDYIGLDVAYYASLYLYKRFGDEKFKPPEWLQEKIKKG 258

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261

 Score =  213 bits (545), Expect = 3e-64
 Identities = 80/191 (41%), Positives = 110/191 (57%), Gaps = 1/191 (0%)

Query: 13  DGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
           D +A+ TL + P NA++  ++  + +  ++    D+++ +V+ G G  FS G DI  F  
Sbjct: 14  DHIAVATLNHAPANAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTS 73

Query: 73  VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLG 132
           V  A   + +  +        +E C KP++AA+ G ALGGGLE AM CH R A    +LG
Sbjct: 74  VTEAKQATELAQLGQV-TFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLG 132

Query: 133 LPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKV 192
           LPELTLG+IPGF GTQRLPR VG +KA EMML S  IT  E  K GL++ V   E  L  
Sbjct: 133 LPELTLGLIPGFAGTQRLPRYVGKAKACEMMLTSTPITGAEALKWGLVNGVFAEETFLDD 192

Query: 193 SRLWALDIAAR 203
           +   A  IA +
Sbjct: 193 TLKVAKQIAGK 203

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233

 Score =  211 bits (540), Expect = 5e-64
 Identities = 50/200 (25%), Positives = 84/200 (42%), Gaps = 8/200 (4%)

Query: 6   VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
           VT    +D + +I + +  VN L   +   L +  + A  RD+V A+V+ GN   FSGGF
Sbjct: 7   VTYTH-DDAIGVIRMDDGKVNVLGPTMQQALNEAIDAA-DRDNVGALVIAGNHRVFSGGF 64

Query: 66  DINVFQKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
           D+ V      +G+     D+      +   +    KP+V A  G A+  G  L      R
Sbjct: 65  DLKVLT----SGEAKPAIDMLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHR 120

Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           +AA    +   E+ +G+   +   + L   +  S   +   L+K+   E     G ID +
Sbjct: 121 VAAHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAYQQAAGLAKTFFGETALAAGFIDEI 180

Query: 184 VTSEELLKVSRLWALDIAAR 203
              E +L  +   A + A  
Sbjct: 181 SLPEVVLSRAEEAAREFAGL 200

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287

 Score =  212 bits (542), Expect = 2e-63
 Identities = 55/197 (27%), Positives = 87/197 (44%), Gaps = 5/197 (2%)

Query: 12  NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
             GVA I L NPPVN +   ++  L+           V+ IV +      F    D+ + 
Sbjct: 16  EHGVARIILDNPPVNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIG 75

Query: 71  QKVHGAGDVSLMPDVSVEL---VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAP 127
           +K+    +++      V +   V  LI    +  +  + G A GGG E         AA 
Sbjct: 76  EKMDALQELAASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAA 135

Query: 128 -KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186
               LG  E  +G+IPG GGTQ L   VG ++A+E++L +    +E     G I+  + +
Sbjct: 136 ETAGLGQIEALMGIIPGGGGTQYLRGRVGRNRALEVVLTADLFDAETAASYGWINRALPA 195

Query: 187 EELLKVSRLWALDIAAR 203
           +EL +     A +IAA 
Sbjct: 196 DELDEYVDRVARNIAAL 212

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265

 Score =  209 bits (535), Expect = 9e-63
 Identities = 57/193 (29%), Positives = 100/193 (51%), Gaps = 4/193 (2%)

Query: 13  DGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVFQ 71
           DG+A I L     N+  +          ++     D+K +++  +  + FS G DIN  +
Sbjct: 17  DGIAEIHLHINKSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLR 76

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQ 130
                   +       E  ++ I    +  +A +EG  +GGGLE+A+ C  R    +  +
Sbjct: 77  SA-DPRFKTQFCLFCNE-TLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGK 134

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
           +GLPE++LGV+ G GGTQRL RL+G S+A++M +  ++IT +E  ++GL++ V    E  
Sbjct: 135 IGLPEVSLGVLAGTGGTQRLARLIGYSRALDMNITGETITPQEALEIGLVNRVFPQAETR 194

Query: 191 KVSRLWALDIAAR 203
           + +R +A  +A  
Sbjct: 195 ERTREYARKLANS 207

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289

 Score =  210 bits (537), Expect = 1e-62
 Identities = 44/196 (22%), Positives = 73/196 (37%), Gaps = 5/196 (2%)

Query: 12  NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
           +  V   T   PP+N +   +V  L    EE       + ++        F    D+   
Sbjct: 15  DGTVLSATFNAPPMNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKV 74

Query: 71  QKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAP- 127
            +   A            L  +   +       +A + G A G G E  + C  R A+  
Sbjct: 75  PEY-TAEAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRE 133

Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
              LG PE+ +G  PG G  Q L RL+G  +A+E +L S    ++   + G ++  V   
Sbjct: 134 NAILGQPEVGIGAPPGAGAIQHLTRLLGRGRALEAVLTSSDFDADLAERYGWVNRAVPDA 193

Query: 188 ELLKVSRLWALDIAAR 203
           EL +     A  ++  
Sbjct: 194 ELDEFVAGIAARMSGF 209

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260

 Score =  208 bits (532), Expect = 2e-62
 Identities = 52/209 (24%), Positives = 88/209 (42%), Gaps = 12/209 (5%)

Query: 2   AAPRVTMEV-GNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
            + RV +E     GVA++   NPPVN+L++  +  L    E+  +    + ++LT +   
Sbjct: 1   GSQRVLVEPDAGAGVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPG 60

Query: 61  -FSGGFDINVFQK---VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLEL 116
            FS G D+         H AG    + ++        +      +V+A+ G    GG  +
Sbjct: 61  VFSAGLDLTEMCGRSPAHYAGYWKAVQEL-----WLRLYQSNLVLVSAINGACPAGGCLV 115

Query: 117 AMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG 174
           A+ C  RI A  P+  +GL E  LG+I  F     L   +G   A   + L       E 
Sbjct: 116 ALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEA 175

Query: 175 WKLGLIDAVVTSEELLKVSRLWALDIAAR 203
            ++G++D VV  E++   +        A 
Sbjct: 176 LQVGIVDQVVPEEQVQSTALSAIAQWMAI 204

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277

 Score =  208 bits (533), Expect = 2e-62
 Identities = 62/192 (32%), Positives = 97/192 (50%), Gaps = 2/192 (1%)

Query: 12  NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           + G+A + +  PP NA+   +   +    +E   RDD+ A+VL G    FS G D+   +
Sbjct: 31  DQGLATLVVSRPPTNAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELR 90

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
            +  A +      V +E  ++ +    KP VAAV G ALG GL LA+    R++    + 
Sbjct: 91  TL-NAPEADTAARVRLE-AIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKF 148

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
           G  E+  G+IPG GG  RL R+VG S+A E++   +   +EE   LGLID +V  +++  
Sbjct: 149 GATEILAGLIPGGGGMGRLTRVVGSSRAKELVFSGRFFDAEEALALGLIDDMVAPDDVYD 208

Query: 192 VSRLWALDIAAR 203
            +  WA      
Sbjct: 209 SAVAWARRYLEC 220

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275

 Score =  204 bits (521), Expect = 1e-60
 Identities = 58/192 (30%), Positives = 96/192 (50%), Gaps = 5/192 (2%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
             V  I L  P   NAL   ++A LKD   +    D ++A+V+ G G  FS G D++  +
Sbjct: 24  GPVLTIGLNRPKKRNALNDGLMAALKDCLTDI--PDQIRAVVIHGIGDHFSAGLDLSELR 81

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
           +   A +  +        V + I+ C+ P++AA++G  +GGGLELA   H R+A      
Sbjct: 82  ER-DATEGLVHSQTWHR-VFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYY 139

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
            LPE + G+  G GG+ RLPRL+G+++  +MML  +  ++ EG   G    ++ +     
Sbjct: 140 ALPEGSRGIFVGGGGSVRLPRLIGVARMADMMLTGRVYSAAEGVVHGFSQYLIENGSAYD 199

Query: 192 VSRLWALDIAAR 203
            +      +A  
Sbjct: 200 KALELGNRVAQN 211

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265

 Score =  202 bits (516), Expect = 4e-60
 Identities = 62/205 (30%), Positives = 110/205 (53%), Gaps = 4/205 (1%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           +    ++++     V  I+L      N+L++ ++  L++   +     + + ++LTG G 
Sbjct: 5   LQLQNISVDYATPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGE 64

Query: 60  R-FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAM 118
           + F  G D+     +     V     +     + ++E   +P++AA+ G+ALGGG EL++
Sbjct: 65  KAFCAGADLKERAGM-NEEQVRHAVSMIRT-TMEMVEQLPQPVIAAINGIALGGGTELSL 122

Query: 119 GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 178
            C  RIAA    LGL E TL +IPG GGTQRLPRL+G+ +A E++   + I+++E  + G
Sbjct: 123 ACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEYG 182

Query: 179 LIDAVVTSEELLKVSRLWALDIAAR 203
           L++ VV    L + +   A  IA+ 
Sbjct: 183 LVEFVVPVHLLEEKAIEIAEKIASN 207

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232

 Score =  199 bits (508), Expect = 2e-59
 Identities = 47/205 (22%), Positives = 83/205 (40%), Gaps = 19/205 (9%)

Query: 6   VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
           V+  + +DGVA +TL N  VNA++  ++       ++A    D   +++TG  G  SGG+
Sbjct: 8   VSYHL-DDGVATLTLNNGKVNAISPDVIIAFNAALDQA--EKDRAIVIVTGQPGILSGGY 64

Query: 66  DINVFQKVHGAGDVSLMPDVSVELVVNL------IEDCKKPIVAAVEGLALGGGLELAMG 119
           D+ V              + ++ LV         +     PI+ A  G A+  G  L + 
Sbjct: 65  DLKVMTS---------SAEAAINLVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLS 115

Query: 120 CHARIAAPKT-QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 178
              RI       +GL E+ +G+     G +     +  S     ++ ++    E     G
Sbjct: 116 ADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAFNRSVINAEMFDPEGAMAAG 175

Query: 179 LIDAVVTSEELLKVSRLWALDIAAR 203
            +D VV+ EEL   +   A  +   
Sbjct: 176 FLDKVVSVEELQGAALAVAAQLKKI 200

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276

 Score =  200 bits (511), Expect = 3e-59
 Identities = 46/195 (23%), Positives = 86/195 (44%), Gaps = 4/195 (2%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DG+A + L  P   NA++  +   + D  E          +VLTG G  ++ G D+  + 
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYF 76

Query: 72  KVHGAGDVSLMPDVSVELVVNL---IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
           +   AG   L   +  E        +    KP +A V G   GGG    + C   I A +
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADE 136

Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
              GL E+  G+ PG   ++ +   VG  +++  ++  K+   ++  ++GL++  V   +
Sbjct: 137 ATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTFGGQKAAEMGLVNESVPLAQ 196

Query: 189 LLKVSRLWALDIAAR 203
           L +V+   A ++  +
Sbjct: 197 LREVTIELARNLLEK 211

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258

 Score =  199 bits (509), Expect = 4e-59
 Identities = 69/193 (35%), Positives = 107/193 (55%), Gaps = 5/193 (2%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
              V II L  P V NAL+  +VA +    E     + V+ IVLTG G  F+ G DI   
Sbjct: 12  EGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEM 71

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
            K     D   +  ++     + +   K P++AAV GLALGGG ELA+ C   +A+   +
Sbjct: 72  AKD----DPIRLEWLNQFADWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAE 127

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
            G PE+ LGV+PG GGTQRL +L+G  +A+E +     ++++E  +LG+++ VV+ E L+
Sbjct: 128 FGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWLWTGARMSAKEAEQLGIVNRVVSPELLM 187

Query: 191 KVSRLWALDIAAR 203
           + +   A  +A +
Sbjct: 188 EETMRLAGRLAEQ 200

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263

 Score =  199 bits (508), Expect = 5e-59
 Identities = 72/204 (35%), Positives = 108/204 (52%), Gaps = 5/204 (2%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
                +       GV +I L  P   NAL   + A + D   +  +  ++ AIV+TG+  
Sbjct: 6   TTYTTIATSRPVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSER 65

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F+ G DI     +          + ++    + +   +KPIVAAV G ALGGG ELAM 
Sbjct: 66  AFAAGADIAEMVTL----TPHQARERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAML 121

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
           C   IAA   + G PE+TLG++PG GGTQRL R VG +KA+++ L  +S+T+EE  ++GL
Sbjct: 122 CDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEEAERVGL 181

Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
           +  +V + +LL  +   A  IA  
Sbjct: 182 VSRIVPAADLLDEALAVAQRIARM 205

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278

 Score =  199 bits (509), Expect = 6e-59
 Identities = 67/204 (32%), Positives = 104/204 (50%), Gaps = 6/204 (2%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           M    + +E  +  V IITL  P   NAL   ++  +     E     D+ AI++TG+  
Sbjct: 22  MTYETILVER-DQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAK 80

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F+ G DI     +      +             +   + P +AAV G ALGGG ELAM 
Sbjct: 81  AFAAGADIKEMADL----TFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMM 136

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
           C   IAA   + G PE+ LGV+PG GG+QRL R +G +KA++++L  +++ + E  + GL
Sbjct: 137 CDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGL 196

Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
           +  VV +++LL  +R  A  I+  
Sbjct: 197 VSRVVPADDLLTEARATATTISQM 220

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243

 Score =  198 bits (506), Expect = 7e-59
 Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 8/192 (4%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           +GV  IT+ +    N  +  IV GL+  F         K ++LTG G  FS G       
Sbjct: 11  NGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLI 70

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
           +           +V V  +  LI DC+ PI+AA++G + GGGL L +     + + ++  
Sbjct: 71  R-------KTRGEVEVLDLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVY 123

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
               +  G  P    +  L   +G   A EM+   ++   +E  + G+   VV+ +++L 
Sbjct: 124 ATNFMKYGFTPVGATSLILREKLGSELAQEMIYTGENYRGKELAERGIPFPVVSRQDVLN 183

Query: 192 VSRLWALDIAAR 203
            ++     IA  
Sbjct: 184 YAQQLGQKIAKS 195

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272

 Score =  198 bits (507), Expect = 1e-58
 Identities = 49/198 (24%), Positives = 93/198 (46%)

Query: 6   VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
           +  E G  GV  + L +P +N++   +   L D +       DV+ +++ G G  FS G 
Sbjct: 15  LRFEPGEHGVLNLVLDSPGLNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGG 74

Query: 66  DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
              +  +  G  +  +        +V  + +  KP+V+A+ G A+G GL +A+     +A
Sbjct: 75  SFELIDETIGDYEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVA 134

Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
           +   ++      LGV  G       P LVG++KA   +L  ++++ EE  ++GL+   V 
Sbjct: 135 SATAKIIDGHTKLGVAAGDHAAICWPLLVGMAKAKYYLLTCETLSGEEAERIGLVSTCVD 194

Query: 186 SEELLKVSRLWALDIAAR 203
            +E+L  +   A ++A  
Sbjct: 195 DDEVLPTATRLAENLAQG 212

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265

 Score =  198 bits (506), Expect = 1e-58
 Identities = 52/203 (25%), Positives = 82/203 (40%), Gaps = 3/203 (1%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
                + +   +  V +I L  P   NA    ++  L     E  +  D++A VL G G 
Sbjct: 6   SDYETLRIRR-DGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGP 64

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F+ G D+         G  SL P+  +           KP++ AV G  L  G+ELA+ 
Sbjct: 65  LFTAGLDLASVAA-EIQGGASLTPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALA 123

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
               IA         E+  G+ P  G T R PR  G   A+  ML + +  + E  ++G+
Sbjct: 124 ADIVIADETATFAQLEVNRGIYPFGGATIRFPRTAGWGNAMRWMLTADTFDAVEAHRIGI 183

Query: 180 IDAVVTSEELLKVSRLWALDIAA 202
           +  +V   E +  +   A  IA 
Sbjct: 184 VQEIVPVGEHVDTAIAIAQTIAR 206

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289

 Score =  198 bits (507), Expect = 2e-58
 Identities = 61/200 (30%), Positives = 91/200 (45%), Gaps = 2/200 (1%)

Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSG 63
           +  E   DG+A IT+  P V NA     V  +     +A   D++  I+LTG G + F  
Sbjct: 29  IRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCS 88

Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
           G D  V     G  D S +  ++V      I  C KP+VA V G ++GGG  L M C   
Sbjct: 89  GGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLT 148

Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           IAA     G     +G   G  G   + R+VG  KA E+  L +   +++   +GL++ V
Sbjct: 149 IAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTV 208

Query: 184 VTSEELLKVSRLWALDIAAR 203
           V   +L K +  W  ++   
Sbjct: 209 VPLADLEKETVRWCREMLQN 228

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256

 Score =  197 bits (504), Expect = 2e-58
 Identities = 53/204 (25%), Positives = 93/204 (45%), Gaps = 13/204 (6%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
             +P + ++   D V  +TL  P   NAL+  + +       +A + DDV  +++TG   
Sbjct: 6   ADSPVLLVDT-TDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADP 64

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F  G D+                   +  +     D  KP++ A+ G A+ GGLELA+ 
Sbjct: 65  VFCAGLDLKELG-----------DTTELPDISPKWPDMTKPVIGAINGAAVTGGLELALY 113

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
           C   IA+   +       +G++P +G + RLP+ VG+  A  M L    +++++  + GL
Sbjct: 114 CDILIASENAKFADTHARVGLMPTWGLSVRLPQKVGVGLARRMSLTGDYLSAQDALRAGL 173

Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
           +  VV  ++LL  +R  A  I   
Sbjct: 174 VTEVVAHDDLLTAARRVAASIVGN 197

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265

 Score =  197 bits (504), Expect = 3e-58
 Identities = 61/203 (30%), Positives = 100/203 (49%), Gaps = 3/203 (1%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
            AA  + +E  +  V I+T+  P   NAL+  +V+     ++E    D ++A +LTG G 
Sbjct: 6   SAARELLVER-DGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGS 64

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            +  G D++    V   G    +   ++   + L     KP++AAV G  LGGG E+   
Sbjct: 65  AYCVGGDLSDGWMV-RDGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQ 123

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
              R++      GLPE+  G++PG G   RL R +  +KA+EM+L  + +T+ E +  GL
Sbjct: 124 TDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQIPYTKAMEMILTGEPLTAFEAYHFGL 183

Query: 180 IDAVVTSEELLKVSRLWALDIAA 202
           +  VV +   L  +R  A  I  
Sbjct: 184 VGHVVPAGTALDKARSLADRIVR 206

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261

 Score =  196 bits (501), Expect = 5e-58
 Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 8/206 (3%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           M+   V +    + VA+I        NAL+   +  L     +  +R +++ I+L    G
Sbjct: 1   MSYQYVNVVT-INKVAVIEFNYGRKLNALSKVFIDDLMQALSDL-NRPEIRCIILRAPSG 58

Query: 60  R--FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELA 117
              FS G DI+        G   L  D  +  +  +I+   KPI++ VEG   GG  E+ 
Sbjct: 59  SKVFSAGHDIHELP---SGGRDPLSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMI 115

Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
           M     IAA  +   +  + LGV     G   L R  G     E++  +  IT++    +
Sbjct: 116 MSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAV 175

Query: 178 GLIDAVVTSEELLKVSRLWALDIAAR 203
           G+++ VV  EEL   +   A  I+ +
Sbjct: 176 GILNHVVEVEELEDFTLQMAHHISEK 201

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250

 Score =  196 bits (500), Expect = 5e-58
 Identities = 53/193 (27%), Positives = 90/193 (46%), Gaps = 4/193 (2%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
           D V +ITL +P   N  +  +   +KD    A + D V+A+V+ G   R FS G D N  
Sbjct: 8   DEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEV 67

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
           +++  + D+    D  ++ +   + +  KP +AAV+G A+G G + A+    R+ A    
Sbjct: 68  KQLSRSEDIEEWIDRVID-LYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTAN 126

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
             +PEL  G+    G    L    G S   E++   +S+ +       L++ VV S  LL
Sbjct: 127 FVMPELKHGIGCSVGAAI-LGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVESSALL 185

Query: 191 KVSRLWALDIAAR 203
             +   A  +A+ 
Sbjct: 186 DAAITQAHVMASY 198

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260

 Score =  196 bits (500), Expect = 7e-58
 Identities = 73/193 (37%), Positives = 93/193 (48%), Gaps = 5/193 (2%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           N  V +I L  P   NAL   ++  L    E       V AIVLTG    F+ G DI   
Sbjct: 14  NSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEM 73

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
           Q                    + I   KKP++AAV G ALGGG ELAM C    A  K Q
Sbjct: 74  QNR----TFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQ 129

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
            G PE+ LG IPG GGTQRL R VG S A+EM+L    I++++  + GL+  +   E L+
Sbjct: 130 FGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLV 189

Query: 191 KVSRLWALDIAAR 203
           + +   A  IA  
Sbjct: 190 EEAIQCAEKIANN 202

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264

 Score =  195 bits (499), Expect = 1e-57
 Identities = 57/204 (27%), Positives = 95/204 (46%), Gaps = 2/204 (0%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
              P +       GV  IT       NA+   +  GL   + +  + + V+A++L G GG
Sbjct: 7   ARYPGLAFAWPRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGG 65

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            FS G    + +++  + +  L        +V    +  +P+VAAVE +A+G GL LA+ 
Sbjct: 66  VFSAGGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALA 125

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
               +    T+L    L LGV  G       P LVG++KA   +LL++ +T EE  +LGL
Sbjct: 126 ADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGL 185

Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
           +   V  E++ + +   A  +A  
Sbjct: 186 VALAVEDEKVYEKALEVAERLAQG 209

>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Length = 263

 Score =  195 bits (498), Expect = 1e-57
 Identities = 50/208 (24%), Positives = 84/208 (40%), Gaps = 6/208 (2%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG- 58
           M+   V  E+  +    ITL  P   N L   +   L +      +   + +I+L     
Sbjct: 1   MSLSYVHTEI-QNDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHR 59

Query: 59  GRFSGGFDINVFQKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLEL 116
             FS G  +              + +V   L   V  I    K  VA + G A GGG  +
Sbjct: 60  AYFSSGPRLEDLLICASDQSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNM 119

Query: 117 AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 176
            + C  RIA  + +       +G+ P  G +  LPR++G  + + ++L  K  TSEE  +
Sbjct: 120 MLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIGYEQTMNLLLEGKLFTSEEALR 179

Query: 177 LGLIDAVV-TSEELLKVSRLWALDIAAR 203
           LGLI  +    +EL +  + +   ++  
Sbjct: 180 LGLIQEICENKQELQERVKNYLKAVSEG 207

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Length = 266

 Score =  195 bits (498), Expect = 1e-57
 Identities = 47/204 (23%), Positives = 88/204 (43%), Gaps = 4/204 (1%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
              P +   +   GV  + +  P   NAL   +   +    +EA    DV+ +VL G   
Sbjct: 2   SLHPHLNANL-EGGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEH 60

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F+ G D+  F       +      V   +++       KP++ AV+G+A+G G+ + + 
Sbjct: 61  DFTAGNDMKDFMGFVQNPNAGPAGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQ 120

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
                A       +P ++LG+ P  G +Q L +  G  KA E++  +K   +E   + GL
Sbjct: 121 ADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAGYHKAAELLFTAKKFNAETALQAGL 180

Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
           ++ +V  E+    ++  A  + A 
Sbjct: 181 VNEIV--EDAYATAQATAQHLTAL 202

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261

 Score =  195 bits (498), Expect = 2e-57
 Identities = 48/195 (24%), Positives = 79/195 (40%), Gaps = 5/195 (2%)

Query: 13  DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           DG   I L       N+L   ++  ++     A + DD K ++L+  G  F  G D   F
Sbjct: 13  DGFTHILLSTKSSENNSLNPEVMREVQSALSTA-AADDSKLVLLSAVGSVFCCGLDFIYF 71

Query: 71  QKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
            +            ++  +   VN     KKPI+ AV G A+G G  +   C    A  K
Sbjct: 72  IRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEK 131

Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
                P  T G  P    T   P+++G + A EM+L  + +T++E    GL+  V     
Sbjct: 132 AWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGT 191

Query: 189 LLKVSRLWALDIAAR 203
             +   +   ++A+ 
Sbjct: 192 FTQEVMVRIKELASC 206

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272

 Score =  195 bits (498), Expect = 2e-57
 Identities = 62/194 (31%), Positives = 101/194 (52%), Gaps = 4/194 (2%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINV 69
           N G+ ++ +      N+L+  ++  L    +   S   V+ I++       F  G D+  
Sbjct: 19  NRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKE 78

Query: 70  FQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
             K+  + +V          V+N I +   P +AA++GLALGGGLELA+ C  R+AA   
Sbjct: 79  RAKM-SSSEVGPFVSKIRA-VINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSA 136

Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
           ++GL E  L +IPG GGTQRLPR +G+S A E++  ++ +  +E   +GLI  V+   + 
Sbjct: 137 KMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQE 196

Query: 190 LKVSRLWALDIAAR 203
              +   ALD+A  
Sbjct: 197 GDAAYRKALDLARE 210

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273

 Score =  195 bits (497), Expect = 2e-57
 Identities = 60/193 (31%), Positives = 89/193 (46%), Gaps = 3/193 (1%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
           +G+A +T+  P V NA     VA + D F  A    +V  IVLTG G   F  G D    
Sbjct: 21  EGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKR 80

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
               G      +P ++V  +  LI    KP++A V+G A+GGG  L + C   IAA    
Sbjct: 81  GH-GGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAI 139

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
            G     +G      G+  L R+VG  KA E+  L +   ++E   +GL++ VV  E++ 
Sbjct: 140 FGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPLEKVE 199

Query: 191 KVSRLWALDIAAR 203
             +  W  +I   
Sbjct: 200 DETVQWCKEIMKH 212

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Length = 264

 Score =  193 bits (493), Expect = 8e-57
 Identities = 54/192 (28%), Positives = 82/192 (42%), Gaps = 13/192 (6%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           + V  I L  P   NAL   +V  L     +A      +AIVLTG G  F  G D++   
Sbjct: 29  EAVLTIELQRPERRNALNSQLVEELTQAIRKA-GDGSARAIVLTGQGTAFCAGADLSGDA 87

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
                 D        +  +   ++    P+V A+ G A+G GL+LAM C  R+ AP    
Sbjct: 88  FAADYPD-------RLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFF 140

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
             P    G+       +RL  LVG  +A  M+L ++ +T+E     G+ + + T  +   
Sbjct: 141 QFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGTLADAQA 200

Query: 192 VSRLWALDIAAR 203
               WA +IA  
Sbjct: 201 ----WAAEIARL 208

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265

 Score =  192 bits (491), Expect = 1e-56
 Identities = 60/227 (26%), Positives = 99/227 (43%), Gaps = 8/227 (3%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DGVA++TL  P   N+  + +   L   ++       V+ IVLTG    F  G  I+   
Sbjct: 15  DGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAA 74

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
                      PD S   V     + + P++AAV G A+G G+ LA+    RI A + + 
Sbjct: 75  ---ETFAAPRNPDFSASPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRY 131

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
            +P++  GV P       LPRLVG + A E++L   S +++   + GL +  + + ++L 
Sbjct: 132 AIPQVRFGVAPDALAHWTLPRLVGTAVAAELLLTGASFSAQRAVETGLANRCLPAGKVLG 191

Query: 192 VSRLWALDIAARRKPW----IRSLHRTDKLGSLSEAREVLKLARLQA 234
            +   A DIA    P      + L    ++  +S A    +      
Sbjct: 192 AALRMAHDIATNVAPESAALTKRLLWDAQMTGMSAAEVAARETADHL 238

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258

 Score =  192 bits (489), Expect = 3e-56
 Identities = 53/203 (26%), Positives = 83/203 (40%), Gaps = 3/203 (1%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
               RVT E     + +I L      NA    ++A L     E    ++ +  VL  +G 
Sbjct: 9   SGPGRVTREQ-RGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHGE 67

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F+ G D+        A      PD  V+    +     KP+V AV+G     G+EL + 
Sbjct: 68  HFTAGLDLMELAP-KLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLN 126

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
               +AA  T+    E+  G+ P  G T R PR  G + A+  +L      ++E  ++ L
Sbjct: 127 ADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPRAAGWTDAMRYILTGDEFDADEALRMRL 186

Query: 180 IDAVVTSEELLKVSRLWALDIAA 202
           +  VV   E L  +  +A  IA 
Sbjct: 187 LTEVVEPGEELARALEYAERIAR 209

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278

 Score =  192 bits (489), Expect = 4e-56
 Identities = 58/204 (28%), Positives = 95/204 (46%), Gaps = 5/204 (2%)

Query: 2   AAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           + P   +E       I+T+  P   NAL+  ++  + + ++   +  D++  +LTG GG 
Sbjct: 18  SGPDALVEQ-RGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGY 76

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL--IEDCKKPIVAAVEGLALGGGLELAM 118
           F  G D+    K    GD           +  L      KKP++AAVEG A+ GG E+  
Sbjct: 77  FCAGMDLKAATK-KPPGDSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQ 135

Query: 119 GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 178
           G   R+AA   + G+ E    + P  G   RL R +  + A +++L  + IT+ E  ++G
Sbjct: 136 GTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEMG 195

Query: 179 LIDAVVTSEELLKVSRLWALDIAA 202
           L+  VV   + L  +   A  IAA
Sbjct: 196 LVGHVVPDGQALTKALEIAEIIAA 219

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256

 Score =  189 bits (482), Expect = 2e-55
 Identities = 51/204 (25%), Positives = 89/204 (43%), Gaps = 3/204 (1%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
            +   + ++  ++ V  +TL  P   NA    +         +A     V  ++LTG+G 
Sbjct: 3   GSMVTLQIDD-DNRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGR 61

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            FS G D+   Q                  ++  +    KP++ AV GL +G G  +   
Sbjct: 62  GFSAGTDLAEMQA-RITDPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGY 120

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
                 +   +L  P  +LGV P    +  LP+LVG   A  +++ S+ I +EE  ++GL
Sbjct: 121 ADLAFMSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQNAAWLLMSSEWIDAEEALRMGL 180

Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
           +  + + EELL  +R  A  +AA+
Sbjct: 181 VWRICSPEELLPEARRHAEILAAK 204

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267

 Score =  189 bits (483), Expect = 2e-55
 Identities = 61/202 (30%), Positives = 92/202 (45%), Gaps = 6/202 (2%)

Query: 3   APRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR- 60
           AP    E     V +IT+  P   NA+   +  G+ D  EEA    +V+A+VLTG G + 
Sbjct: 8   APGALAER-RGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKS 66

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           F  G D+    +          P+      V       KP +AAV G ALGGG ELA+  
Sbjct: 67  FCAGADLKAIAR-RENLYHPDHPEWGFAGYV--RHFIDKPTIAAVNGTALGGGTELALAS 123

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
              +A  + Q GLPE+  G+I   GG  R+   +    A+ ++L  + +++      GLI
Sbjct: 124 DLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGLI 183

Query: 181 DAVVTSEELLKVSRLWALDIAA 202
           + VV +  +L  +   A  I  
Sbjct: 184 NEVVEAGSVLDAALALASAITV 205

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291

 Score =  190 bits (485), Expect = 2e-55
 Identities = 47/195 (24%), Positives = 79/195 (40%), Gaps = 5/195 (2%)

Query: 13  DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           DG   I L       NAL   ++  + +    A + DD K ++ +  G  F  G D   F
Sbjct: 31  DGFTQIVLSTRSTEKNALNTEVIKEIVNALNSA-AADDSKLVLFSAAGSVFCCGLDFGYF 89

Query: 71  QKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
            K       +   ++   +   VN     KKPIV +V G A+G G  +   C    A  K
Sbjct: 90  VKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEK 149

Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
                P  T G  P    +   P+++G + A EM++  + +T+ E    GL+  V  +  
Sbjct: 150 AWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGT 209

Query: 189 LLKVSRLWALDIAAR 203
             +   +   ++A+ 
Sbjct: 210 FTQEVMIQIKELASY 224

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305

 Score =  190 bits (484), Expect = 4e-55
 Identities = 50/219 (22%), Positives = 88/219 (40%), Gaps = 17/219 (7%)

Query: 1   MAAPRVTMEVGNDGVAIITL-----INPPVNALAIPIVAGLKDKFEEA-----TSRDDVK 50
            +  R+  E     V  I +     INP     +  +V  +            T+     
Sbjct: 29  GSTLRIIEEP-QRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAP 87

Query: 51  AIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL-----IEDCKKPIVAAV 105
            +VL  +   F+ G D+ +F ++   GD + + D +   V  +         +   +A V
Sbjct: 88  HVVLASDSDVFNLGGDLALFCQLIREGDRARLLDYAQRCVRGVHAFHVGLGARAHSIALV 147

Query: 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL 165
           +G ALGGG E A+ CH  IA     +GLPE+   + PG G    + + +    A ++ML 
Sbjct: 148 QGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMGAYSFMCQRISAHLAQKIMLE 207

Query: 166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR 204
               ++E+   +GL+D VV   + +          + R 
Sbjct: 208 GNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVI-RESKRT 245

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254

 Score =  188 bits (480), Expect = 4e-55
 Identities = 43/193 (22%), Positives = 79/193 (40%), Gaps = 7/193 (3%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
                  TL  P   NAL+  +V  L D  + A  R+ V  +V  G G  FS GFD   +
Sbjct: 14  RPAAWTFTLSRPEKRNALSAELVEALIDGVDAA-HREQVPLLVFAGAGRNFSAGFDFTDY 72

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
           +       +  M  +  E+++  +       +A   G   G G++L   C  R   P+  
Sbjct: 73  ETQSEGDLLLRMVRI--EMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAG 130

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
             +P L  G++    GT+R   +VG  +A+ ++  +++  ++E  ++G +       +  
Sbjct: 131 FRMPGLKFGLVL---GTRRFRDIVGADQALSILGSARAFDADEARRIGFVRDCAAQAQWP 187

Query: 191 KVSRLWALDIAAR 203
            +    A    A 
Sbjct: 188 ALIDAAAEAATAL 200

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Length = 276

 Score =  189 bits (482), Expect = 4e-55
 Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 3/192 (1%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           +  + IITL  P   N++   +  GL   ++  T     +A V+TG G  FS G D    
Sbjct: 35  DGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYL 94

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
           +++    D+          +V  +  C+ P+VAAV G A+G G  L         A    
Sbjct: 95  KELSADADLRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAY 154

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
           L  P + +G++   GG    P  + L  A E  L    I+++   +LGL + V   ++ +
Sbjct: 155 LADPHVQVGLVAADGGPLTWPLHISLLLAKEYALTGTRISAQRAVELGLANHVA--DDPV 212

Query: 191 KVSRLWALDIAA 202
             +   A  I  
Sbjct: 213 AEAIACAKKILE 224

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290

 Score =  189 bits (482), Expect = 6e-55
 Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 9/206 (4%)

Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           V ++     +A++TL  P   NA+A  ++   K    + +  +DV+A+V+TG G  F  G
Sbjct: 25  VLVDRPRPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSG 84

Query: 65  FDINVFQKVHGAGDVSLMPDVSVEL------VVNLIEDCKKPIVAAVEGLALGGGLELAM 118
            D      +         P +++        V+  +    +P++AA+ G A+GGGL LA+
Sbjct: 85  ADQKSAGPI-PHIGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLAL 143

Query: 119 GCHARIAAPKTQLGLPELTLGVIPG-FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
            C  R+A+         +  G+     G +  LPR +G S+A ++ML  + + ++E  ++
Sbjct: 144 ACDVRVASQDAYFRAAGINNGLTASELGLSYLLPRAIGTSRASDIMLTGRDVDADEAERI 203

Query: 178 GLIDAVVTSEELLKVSRLWALDIAAR 203
           GL+   V SE LL+        IA  
Sbjct: 204 GLVSRKVASESLLEECYAIGERIAGF 229

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253

 Score =  188 bits (479), Expect = 6e-55
 Identities = 50/193 (25%), Positives = 91/193 (47%), Gaps = 3/193 (1%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
             VA++ L +P   N L+  +   L    ++  +   V+A+VLTG G  FS G D+   +
Sbjct: 7   GHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLE 66

Query: 72  KVHGAGDVSLMPDVSVEL-VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
           +V   G           + + + +    KP VAAV G A+ GG  LA+ C   +   + +
Sbjct: 67  RVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEAR 126

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
           LG  E+ +G +     +  L R VG   A +++L  + + + E   LGL++ +    + L
Sbjct: 127 LGYTEVKIGFVAA-LVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGKAL 185

Query: 191 KVSRLWALDIAAR 203
           + ++  A ++A  
Sbjct: 186 EEAKALAEEVAKN 198

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265

 Score =  188 bits (479), Expect = 8e-55
 Identities = 58/202 (28%), Positives = 93/202 (46%), Gaps = 9/202 (4%)

Query: 2   AAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
             P V +E   D + IIT+  P   N++   +   L D  +   +   +   +LTG GG 
Sbjct: 13  TEPEVLVEQ-RDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAGGS 71

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           F  G D+  F      G+      V    +        KP++AAVEG AL GG ELA+  
Sbjct: 72  FCAGMDLKAFA----RGE---NVVVEGRGLGFTERPPAKPLIAAVEGYALAGGTELALAT 124

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
              +AA  +  G+PE+  G++ G GG  RLP  +  + A+E+ L   ++++E    LG++
Sbjct: 125 DLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIPYAIAMELALTGDNLSAERAHALGMV 184

Query: 181 DAVVTSEELLKVSRLWALDIAA 202
           + +      L  +   A  I A
Sbjct: 185 NVLAEPGAALDAAIALAEKITA 206

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275

 Score =  187 bits (476), Expect = 3e-54
 Identities = 58/198 (29%), Positives = 91/198 (45%), Gaps = 8/198 (4%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR------FSGGF 65
            G+A I +  P   NA     V  L D F  A   + +  ++LTG G        F  G 
Sbjct: 18  GGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGG 77

Query: 66  DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
           D +V  +  G  D    P ++V  +  LI    K ++A V G A+GGG  L + C   IA
Sbjct: 78  DQSVRGE-GGYIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIA 136

Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
           A     G     +G   G  G+  L R+VG  KA E+  L +  +++E  ++G+++ VV 
Sbjct: 137 ADNAIFGQTGPKVGSFDGGFGSSYLARIVGQKKAREIWYLCRQYSAQEAERMGMVNTVVP 196

Query: 186 SEELLKVSRLWALDIAAR 203
            + L +    WA +I ++
Sbjct: 197 VDRLEEEGIQWAKEILSK 214

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263

 Score =  186 bits (475), Expect = 3e-54
 Identities = 36/200 (18%), Positives = 82/200 (41%), Gaps = 4/200 (2%)

Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           +      +G+  + +                  D F + +   D + ++LTG+G  +   
Sbjct: 25  LHFHRDENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAE 84

Query: 65  FDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARI 124
            D      V    +         +++ N + D + P+++AV G AL    E  +     +
Sbjct: 85  IDFPSLGDVTNPREWDKTYWEGKKVLQN-LLDIEVPVISAVNGAALLHS-EYILTTDIIL 142

Query: 125 AAPKTQL-GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           A+  T    +P L  G++PG G     P  +GL +    +   + +T+++ ++L ++  V
Sbjct: 143 ASENTVFQDMPHLNAGIVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNVVHEV 202

Query: 184 VTSEELLKVSRLWALDIAAR 203
           +   +L++ +   A  +A +
Sbjct: 203 LPQSKLMERAWEIARTLAKQ 222

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269

 Score =  186 bits (474), Expect = 5e-54
 Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 4/195 (2%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
            DGVA IT+  P   NAL++  +  + D    A   D V A+++TG    F  GF +   
Sbjct: 10  EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREI 69

Query: 71  QKVHGAGDVSLMPDVSVEL---VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAP 127
               G   V     ++      +++ I   K+P++AA+ G+A GGGL +++     I A 
Sbjct: 70  PLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICAD 129

Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
             +      T+G+      +  L R+VG+ +A+E+ML ++++  EE    GL+  V   +
Sbjct: 130 SAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKD 189

Query: 188 ELLKVSRLWALDIAA 202
           E  +V+   A ++AA
Sbjct: 190 EFREVAWKVARELAA 204

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274

 Score =  185 bits (473), Expect = 7e-54
 Identities = 48/210 (22%), Positives = 93/210 (44%), Gaps = 10/210 (4%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
            +   +  EV +   A ITL  P   NAL+  ++  L+  + EA + D V  +V+TG G 
Sbjct: 8   DSFDTIKYEV-DGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGR 66

Query: 60  RFSGGFDINVFQK-----VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGL 114
            F  G D+    +            +     + +          KP++ AV G+  G G+
Sbjct: 67  AFCSGADVKEIPEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGM 126

Query: 115 ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML--LSKSITSE 172
           +        IA+ +     P +++G++ G     R+ R++  S A+ M L    + ++++
Sbjct: 127 DWVTTTDIVIASEQATFFDPHVSIGLVAG-RELVRVSRVLPRSIALRMALMGKHERMSAQ 185

Query: 173 EGWKLGLIDAVVTSEELLKVSRLWALDIAA 202
             ++LGLI  +V  + LL+ +   A  + +
Sbjct: 186 RAYELGLISEIVEHDRLLERAHEIADIVNS 215

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257

 Score =  183 bits (466), Expect = 4e-53
 Identities = 55/193 (28%), Positives = 95/193 (49%), Gaps = 4/193 (2%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
              VA +TL  P   NA    + A +    ++A +  +V+ +V+TG G  F  G D++  
Sbjct: 10  KGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGV 69

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
                  D   +       ++  +   +KP+VAAV G A G G+ LA+ C  R+ + K  
Sbjct: 70  T---EEMDHGDVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKAS 126

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
                + +G++P  G    LPRLVG +KA+E+ +L + +T+EE   LGL   V+   +  
Sbjct: 127 FAPAFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVTAEEAAALGLATKVIPLSDWE 186

Query: 191 KVSRLWALDIAAR 203
           +  + +A  ++A 
Sbjct: 187 EEVKQFAERLSAM 199

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263

 Score =  182 bits (465), Expect = 6e-53
 Identities = 51/207 (24%), Positives = 85/207 (41%), Gaps = 5/207 (2%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           ++   +  EV ++GV  +TL   P + L+  ++A L D    A   D V  +V+ G G  
Sbjct: 3   LSQDGLLGEVLSEGVLTLTLGRAPAHPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRI 62

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSV----ELVVNLIEDCKKPIVAAVEGLALGGGLEL 116
           F  G D+    +     D        +      ++  +  C KP +A VEG+A   GL+L
Sbjct: 63  FCAGHDLKEIGRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQL 122

Query: 117 AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 176
              C    A+P  +  LP +  G          + R++G     EM L   +  ++    
Sbjct: 123 MAACDLAYASPAARFCLPGVQNGGFCTTPAV-AVSRVIGRRAVTEMALTGATYDADWALA 181

Query: 177 LGLIDAVVTSEELLKVSRLWALDIAAR 203
            GLI+ ++    L       A  +AAR
Sbjct: 182 AGLINRILPEAALATHVADLAGALAAR 208

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262

 Score =  182 bits (465), Expect = 6e-53
 Identities = 59/201 (29%), Positives = 93/201 (46%), Gaps = 6/201 (2%)

Query: 3   APRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
            P V +E     V  + L  P   NA+  P  A L   F E  +  +    VL G+ G F
Sbjct: 10  QPAVRVEK-AGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTF 68

Query: 62  SGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
             G D+       G  ++       +           KP++AA+ G A+ GG+ELA+ C 
Sbjct: 69  CAGADLKAMGTDRGN-ELHPHGPGPMGPS---RLRLSKPVIAAISGHAVAGGIELALWCD 124

Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
            R+      LG+     GV    GGT RLPRL+G S+A++++L  + + + E   +GL++
Sbjct: 125 LRVVEEDAVLGVFCRRWGVPLIDGGTIRLPRLIGHSRAMDLILTGRPVHANEALDIGLVN 184

Query: 182 AVVTSEELLKVSRLWALDIAA 202
            VV   +  + +   A +IAA
Sbjct: 185 RVVARGQAREAAETLAAEIAA 205

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257

 Score =  182 bits (465), Expect = 6e-53
 Identities = 40/196 (20%), Positives = 77/196 (39%), Gaps = 9/196 (4%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           + GV ++T+                L   F +     + K ++LTG G  F    D   F
Sbjct: 23  DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSF 82

Query: 71  QKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
                 G      ++  E   ++N +   + P++AAV G  +    E+ +     +AA  
Sbjct: 83  N----LGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNG-PVTNAPEIPVMSDIVLAAES 137

Query: 129 TQLG-LPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
                 P    G++PG G     P ++G ++    +L  + + +      G ++ V++ +
Sbjct: 138 ATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSEQ 197

Query: 188 ELLKVSRLWALDIAAR 203
           ELL  +   A  IA +
Sbjct: 198 ELLPRAWELARGIAEK 213

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279

 Score =  183 bits (466), Expect = 7e-53
 Identities = 60/194 (30%), Positives = 95/194 (48%), Gaps = 4/194 (2%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DGVA +TL  P   NAL     A L+D   E + R  V+A+VL G G  F  G D++   
Sbjct: 25  DGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEII 84

Query: 72  KVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
               + D + + D +     VV  + +C  P++AA+ G+A G G  LA+    R+A P T
Sbjct: 85  GATLSMDTARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPST 144

Query: 130 QLGLPELTLGVIPG-FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
           +       +G+  G  G    LPR+VGL  A  +++L  ++ + E  ++GLI  +     
Sbjct: 145 RFAFLFTRVGLSGGDMGAAYLLPRVVGLGHATRLLMLGDTVRAPEAERIGLISELTEEGR 204

Query: 189 LLKVSRLWALDIAA 202
             + +R  A  +A 
Sbjct: 205 ADEAARTLARRLAD 218

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256

 Score =  182 bits (464), Expect = 7e-53
 Identities = 64/201 (31%), Positives = 96/201 (47%), Gaps = 10/201 (4%)

Query: 3   APRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
           A  V +E   D V +IT+  P   NA+   +  GL    ++  S  D+   ++TG GG F
Sbjct: 6   ADEVLIEQ-RDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNF 64

Query: 62  SGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
             G D+  F    G   +S        +        +KPI+AAVEG AL GG EL + C 
Sbjct: 65  CAGMDLKAFVS--GEAVLSERGLGFTNV------PPRKPIIAAVEGFALAGGTELVLSCD 116

Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
             +A    + G+PE+  G++ G GG  RLP  +    A+E+ L  +S T+E+  K G I+
Sbjct: 117 LVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALTGESFTAEDAAKYGFIN 176

Query: 182 AVVTSEELLKVSRLWALDIAA 202
            +V   + L  +   A  I A
Sbjct: 177 RLVDDGQALDTALELAAKITA 197

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298

 Score =  183 bits (466), Expect = 1e-52
 Identities = 66/234 (28%), Positives = 100/234 (42%), Gaps = 11/234 (4%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
            A   V  E    GVAIIT       NA    + AG     + A +   ++ IVLTG G 
Sbjct: 26  DAQDAVLYEATPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGR 85

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVS------VELVVNLIEDCKKPIVAAVEGLALGGG 113
            F  G  +       G          +       E   + +   +KP++AA+ G  +G G
Sbjct: 86  GFCAGAYLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIG 145

Query: 114 LELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEE 173
           L  A+ C  R AA   +        G+I  FG +  LPRL   + A++++L  ++  +EE
Sbjct: 146 LTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLTSWAVALDLLLSGRTFLAEE 205

Query: 174 GWKLGLIDAVVTSEELLKVSRLWALDIAARRKP----WIRSLHRTDKLGSLSEA 223
             +LGL+  VVT E+L+  +  +A DIA    P     I+     D    + EA
Sbjct: 206 AAQLGLVKEVVTPEQLMPRALEYAEDIARYCSPSSMAVIKRQVYGDATRDVVEA 259

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255

 Score =  178 bits (454), Expect = 2e-51
 Identities = 51/204 (25%), Positives = 94/204 (46%), Gaps = 10/204 (4%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
            +   +++E  +  V  I L  P   NA+  P++  L     +A + + V+A++LTG G 
Sbjct: 3   GSMNGISVEH-DGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGR 61

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F  G D+        A         +   VV  I    KP++A V G A+G G  LA+ 
Sbjct: 62  AFCSGGDLTGGDTAGAAD--------AANRVVRAITSLPKPVIAGVHGAAVGFGCSLALA 113

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
           C   +AAP +   L    +G++P  G +  LP L+G ++   M + ++ I++   ++ G+
Sbjct: 114 CDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGM 173

Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
           I  + +++E   V       ++  
Sbjct: 174 ISHITSADEYESVLTDVLRSVSGG 197

>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279

 Score =  177 bits (450), Expect = 1e-50
 Identities = 54/207 (26%), Positives = 87/207 (42%), Gaps = 7/207 (3%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
                +  +V +D +A ITL  P   NA    ++  L   +  A   +DV  IVL  NG 
Sbjct: 17  RTEMYIDYDV-SDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGK 75

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL---IEDCKKPIVAAVEGLALGGGLEL 116
            FS G D+     V     +  +        +       +  KP +AAV+G  + GGL L
Sbjct: 76  HFSAGHDLRGGGPVPDKLTLEFIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLL 135

Query: 117 AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 176
              C   IAA       P + + +  G          +G  KA E++   +++T+EE  +
Sbjct: 136 CWPCDLIIAAEDALFSDPVVLMDI--GGVEYHGHTWELGPRKAKEILFTGRAMTAEEVAQ 193

Query: 177 LGLIDAVVTSEELLKVSRLWALDIAAR 203
            G+++ VV  + L   +R  A +IA  
Sbjct: 194 TGMVNRVVPRDRLDAETRALAGEIAKM 220

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280

 Score =  177 bits (450), Expect = 2e-50
 Identities = 52/194 (26%), Positives = 79/194 (40%), Gaps = 4/194 (2%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DG+  I    P   NA+   +   +    + A S+DD    VLTGNG  +S G D+  F 
Sbjct: 34  DGITKIMFNRPKKKNAINTEMYHEIMRALKAA-SKDDSIITVLTGNGDYYSSGNDLTNFT 92

Query: 72  KVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
            +   G      + +V L   V    D  KP++A V G A+G  + L     A  A+ + 
Sbjct: 93  DIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRA 152

Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
               P   LG  P    +   P+++  +KA EM++  K +T+ E    GL+  V      
Sbjct: 153 TFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTF 212

Query: 190 LKVSRLWALDIAAR 203
            K         A  
Sbjct: 213 QKEVWTRLKAFAKL 226

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268

 Score =  175 bits (446), Expect = 4e-50
 Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 6/205 (2%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           M+   +  E+  D V ++T+      NA    ++  ++ + + A +  +V+ IVL  NG 
Sbjct: 1   MSLSDLLYEI-QDKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGK 59

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELA 117
            FS G D+   Q +    +   + D S+ L  ++  I    KP +A V+G A GGG  LA
Sbjct: 60  HFSAGADLTWMQSMANFTEEENLED-SLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLA 118

Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
             C   IA+   +    E+ LG+IP    +  + R +G   A  + + ++   +   + L
Sbjct: 119 AACDIAIASTSARFCFSEVKLGLIPA-VISPYVVRAIGERAAKMLFMSAEVFDATRAYSL 177

Query: 178 GLIDAVVTSEELLKVSRLWALDIAA 202
            L+   V  + LL+ +  +A  I+ 
Sbjct: 178 NLVQHCVPDDTLLEFTLKYASQISN 202

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440

 Score =  178 bits (454), Expect = 2e-49
 Identities = 52/226 (23%), Positives = 84/226 (37%), Gaps = 26/226 (11%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-- 57
           +    V +E   DGVA +T+      NA     V  ++   + A     V+  +L G   
Sbjct: 164 VEMEAVHLER-RDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVM 222

Query: 58  ------GGR-FSGGFDINVFQK--------------VHGAGDVSLMPDVSVELVVNLIED 96
                 G R FS G ++    +               +    V  +              
Sbjct: 223 SHPRYRGKRVFSAGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPR 282

Query: 97  CKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156
            +KP VAAV+G A+GGG +L +     +A+      LP    G+IPG     RL R  G 
Sbjct: 283 IEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIPG-AANLRLGRFAGP 341

Query: 157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA 202
             + +++L  + I ++E     L+D VV  +EL          +  
Sbjct: 342 RVSRQVILEGRRIWAKEPEARLLVDEVVEPDELDAAIERSLTRLDG 387

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334

 Score =  174 bits (443), Expect = 4e-49
 Identities = 55/210 (26%), Positives = 86/210 (40%), Gaps = 18/210 (8%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-------FSG 63
           +D    +    P V NA     V  L    + A    DV  ++LTGNG         F  
Sbjct: 64  DDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCS 123

Query: 64  GFDINVFQK---------VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGL 114
           G D  +  +              DV+    + +  V  LI    K ++  V G A GGG 
Sbjct: 124 GGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGH 183

Query: 115 ELAMGCHARIAAPKT-QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEE 173
            L + C   +A+ +  +    +  +G   G  G+  L R VG   A E+  L ++ T+E+
Sbjct: 184 SLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQ 243

Query: 174 GWKLGLIDAVVTSEELLKVSRLWALDIAAR 203
             ++G ++AV    EL  V   WA +I A+
Sbjct: 244 MHQMGAVNAVAEHAELETVGLQWAAEINAK 273

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Length = 275

 Score =  171 bits (437), Expect = 9e-49
 Identities = 48/203 (23%), Positives = 90/203 (44%), Gaps = 12/203 (5%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
             V  + L  P   NA+       L + F++ +   D +A+V++G G  F+ G D+    
Sbjct: 12  KHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMA 71

Query: 72  KVHGAGDVSLMPDVSVEL---------VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHA 122
                     +  ++  L            +IE C KP++AA+ G  +GGG++L   C  
Sbjct: 72  SDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDI 131

Query: 123 RIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG-LSKAIEMMLLSKSITSEEGWKLGLID 181
           R         + E+ +G+    G  QRLP+++G  S   E+   ++ + ++E    GL+ 
Sbjct: 132 RYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVS 191

Query: 182 AVV-TSEELLKVSRLWALDIAAR 203
            V    + +L  +   A DI+++
Sbjct: 192 RVFPDKDVMLNAAFALAADISSK 214

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Length = 280

 Score =  169 bits (431), Expect = 7e-48
 Identities = 46/220 (20%), Positives = 70/220 (31%), Gaps = 18/220 (8%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
               +++  +      II LINP   NAL       L +  E A    DV   ++  +G 
Sbjct: 6   RQNEKISYRI-EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGR 64

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVEL---------VVNLIEDCKKPIVAAVEGLAL 110
            FS G D     K  G        + S  +         V +      K ++  + G A+
Sbjct: 65  FFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAI 124

Query: 111 GGGLELAMGCHARIAAP-KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169
           G    L   C    +   K  L  P   LG+I   G T  LP   G +   E ++ +K  
Sbjct: 125 GLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPF 184

Query: 170 TSEEGWKLGLIDAVVTSEELL------KVSRLWALDIAAR 203
             +   + G I                KV       +   
Sbjct: 185 KYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGL 224

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286

 Score =  169 bits (431), Expect = 7e-48
 Identities = 48/204 (23%), Positives = 89/204 (43%), Gaps = 3/204 (1%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           M+ P +  +    GV  +TL  P   NAL+  ++A L + F      + V+A+VL  +G 
Sbjct: 22  MSEPLLLQDRDERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGK 81

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F  G D+   +          +     +++   I+    P++A V G+A   G +L   
Sbjct: 82  AFCAGHDLKEMRAEPSREYYEKLFARCTDVM-LAIQRLPAPVIARVHGIATAAGCQLVAM 140

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
           C   +A    +  +  + +G+     G   L R VG   A EM++  + +++++   LGL
Sbjct: 141 CDLAVATRDARFAVSGINVGLFCSTPGVA-LSRNVGRKAAFEMLVTGEFVSADDAKGLGL 199

Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
           ++ VV  + L          I A+
Sbjct: 200 VNRVVAPKALDDEIEAMVSKIVAK 223

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Length = 287

 Score =  164 bits (417), Expect = 7e-46
 Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 3/204 (1%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
            + PR T     DG+  I L NP   N L++ ++  L+         +D+K I+++  G 
Sbjct: 29  ESEPRPTSARQLDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGP 88

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            FS G D+    +  G  D       +   V+  I +   P++A V GLA   G +L   
Sbjct: 89  VFSSGHDLKELTEEQGR-DYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVAS 147

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
           C   +A+ K+    P + +G+     G   L R V    A+EM+   + I+++E    GL
Sbjct: 148 CDIAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPRKVALEMLFTGEPISAQEALLHGL 206

Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
           +  VV   EL + +   A  IA+ 
Sbjct: 207 LSKVVPEAELQEETMRIARKIASL 230

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556

 Score =  170 bits (432), Expect = 1e-45
 Identities = 59/320 (18%), Positives = 110/320 (34%), Gaps = 30/320 (9%)

Query: 12  NDGVAIITL-----------INPPVNALAIPIVAGLKDKFEEATS-RDDVKAIVLTGNGG 59
           N  VA + +               +N+  + +   L D  +       +V+ +VLT    
Sbjct: 28  NGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKD 87

Query: 60  R-FSGGFDINVFQK--VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLEL 116
           R F  G +I +          +     + +   + +         +AAV G   GGG EL
Sbjct: 88  RVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYEL 147

Query: 117 AMGCHARIAA--PKTQLGLPELT-LGVIPGFGGTQRL--PRLVGLSKAIEMMLLSKSITS 171
           A+ C          + + LPE+  LGV+PG GG  R+   R V   +A     + + +  
Sbjct: 148 ALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRKVRHDRADIFCTVVEGVRG 207

Query: 172 EEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-------RKPWIRSLHRTDKLGSLSEAR 224
           E      L+D VV   +  +  +  AL++AA+       +   +  + RTD+   L+   
Sbjct: 208 ERAKAWRLVDEVVKPNQFDQAIQARALELAAQSDRPAHAQGVPLTRIERTDREDGLTYKT 267

Query: 225 ---EVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRG 281
               + +  R+          +  A +D I     +       +E       +  +    
Sbjct: 268 LDVTIDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAV 327

Query: 282 LVHVFFAQRATSKVPNVTDI 301
              VF  +     +      
Sbjct: 328 GTWVFRTEGDARHLLAADAS 347

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556

 Score = 60.0 bits (145), Expect = 2e-09
 Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 12/106 (11%)

Query: 90  VVNLIEDCKKPIVAAVE-GLALGGGL-ELAMGCHARI-------AAPKTQLGLPELTLGV 140
            +  I+   + + A +E G    G   ELA                 +  + L E+  G+
Sbjct: 367 TLARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPAITLSEVNFGL 426

Query: 141 IPGFGGTQRLP-RLVGLSKAIEMML--LSKSITSEEGWKLGLIDAV 183
            P      RL  R    ++ ++ +   + ++I   E  +LGL+ A 
Sbjct: 427 YPMVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTAS 472

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Length = 267

 Score =  158 bits (403), Expect = 4e-44
 Identities = 43/203 (21%), Positives = 68/203 (33%), Gaps = 6/203 (2%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           +    + +      V  IT   P   N +   ++        +      V  +VL G   
Sbjct: 4   VTYQTIKVRF-QASVCYITFHRPEANNTINDTLIEECLQVLNQC-ETSTVTVVVLEGLPE 61

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F  G D     +    G         +  +   ++      ++ V G    GGL     
Sbjct: 62  VFCFGADFQEIYQEMKRGRKQASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSA 121

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
               IA       L EL  G+ P       L R +G  KA  M L++K I+ +E  + GL
Sbjct: 122 TDIAIADQTASFSLSELLFGLYPA-CVLPFLIRRIGRQKAHYMTLMTKPISVQEASEWGL 180

Query: 180 IDAVVTSEELLKVSRLWALDIAA 202
           IDA     ++L   R   L +  
Sbjct: 181 IDAFDAESDVL--LRKHLLRLRR 201

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333

 Score =  159 bits (403), Expect = 2e-43
 Identities = 46/219 (21%), Positives = 76/219 (34%), Gaps = 32/219 (14%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           D VA IT   P   NA+       L    E A    DV  I+++G G  F  GFD++ + 
Sbjct: 43  DRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYA 102

Query: 72  KVHGAGDVSLMPDVSVEL----------------------------VVNLIEDCKKPIVA 103
           +   +       + +V                                  +  C KP V 
Sbjct: 103 EGSSSAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVV 162

Query: 104 AVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM 163
            + G  + GG ++A+     IAA   ++G P + +  +P  G        +G  +A  ++
Sbjct: 163 KIHGYCVAGGTDIALHADQVIAAADAKIGYPPMRVWGVPAAG---LWAHRLGDQRAKRLL 219

Query: 164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA 202
                IT  +  + GL        +L   +      IAA
Sbjct: 220 FTGDCITGAQAAEWGLAVEAPDPADLDARTERLVERIAA 258

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} Length = 267

 Score =  153 bits (390), Expect = 2e-42
 Identities = 49/206 (23%), Positives = 84/206 (40%), Gaps = 8/206 (3%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           +         G   VA +TL +P   NAL+  +V+ L     +A+S   V+ +VL   GG
Sbjct: 8   LVDYAGPAATG-GPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGG 66

Query: 60  RFSGGFDINVFQKVHGAGD-VSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLEL 116
            F  G D++             +  + + E+  ++  I + + P++AA++G    GG  L
Sbjct: 67  TFCAGADLSEAGSGGSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGL 126

Query: 117 AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 176
              C   +A P++   L E  +GV P       LP+L     A    L  +   +    +
Sbjct: 127 VGACDIAVAGPRSSFALTEARIGVAPAIISLTLLPKL-SARAAARYYLTGEKFDARRAEE 185

Query: 177 LGLIDAVVTSEELLKVSRLWALDIAA 202
           +GLI      E+L         D+  
Sbjct: 186 IGLITMAA--EDLDAAIDQLVTDVGR 209

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} Length = 407

 Score = 97.5 bits (243), Expect = 8e-22
 Identities = 42/200 (21%), Positives = 84/200 (42%), Gaps = 12/200 (6%)

Query: 1   MAAPRVTMEV----GNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLT 55
            A   V  +         V ++TL      NAL + +V  +  +         +  +VL 
Sbjct: 34  FATQNVVFQTLATASGKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLD 93

Query: 56  GNGGR-FSGGFDINVFQKVHGAGDVSLMPDV----SVELVVN-LIEDCKKPIVAAVEGLA 109
           G+G + F  G D+        A    +          E  ++ L+    KP++   +G+ 
Sbjct: 94  GSGEKAFCAGGDVRALYHASVAAKGQVTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIV 153

Query: 110 LGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169
           +GGGL L  G   ++    +++ +PE+T+G+ P  GG+  L R+ G    + + L +  +
Sbjct: 154 MGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRMPG-KMGLFLGLTAYHM 212

Query: 170 TSEEGWKLGLIDAVVTSEEL 189
            + +   +GL D  +  ++ 
Sbjct: 213 NAADACYVGLADHYLNRDDK 232

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} Length = 363

 Score = 95.5 bits (238), Expect = 2e-21
 Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 5/191 (2%)

Query: 2   AAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           AA  V +        +ITL  P   NAL + ++  +  + ++     +   I++ G GG+
Sbjct: 4   AAEEVLLGKKG-CTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGK 62

Query: 61  -FSGGFDINVFQKVHGAGDVSLMPDVSVELVVN-LIEDCKKPIVAAVEGLALGGGLELAM 118
            F  G DI V  +   A           E ++N  +  C+KP VA + G+ +GGG+ L++
Sbjct: 63  AFCAGGDIRVISEAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSV 122

Query: 119 GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 178
               R+A  K    +PE  +G+ P  GG   LPRL G      + L    +   + ++ G
Sbjct: 123 HGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQG-KLGYFLALTGFRLKGRDVYRAG 181

Query: 179 LIDAVVTSEEL 189
           +    V SE+L
Sbjct: 182 IATHFVDSEKL 192

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 3e-09
 Identities = 88/603 (14%), Positives = 189/603 (31%), Gaps = 147/603 (24%)

Query: 36  LKDKFEEATSRDDVKAIVLTGN---GGRFSGGFDI------NVFQKVHGAGDVSLMPDVS 86
           ++D  +   S++++  I+++ +   G      F         + QK     +V L  +  
Sbjct: 38  VQDMPKSILSKEEIDHIIMSKDAVSGTLRL--FWTLLSKQEEMVQKF--VEEV-LRINYK 92

Query: 87  VELVVNLIEDCKKPIVAAVEGLA----LGGGLELAMGCHARIAAPKTQL--GLPELTLG- 139
             L+  +  + ++P +     +     L    ++    +     P  +L   L EL    
Sbjct: 93  F-LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151

Query: 140 --VIPGFGGTQRLPRLVGLSK---AIEMMLLSKSITSEEG----W-KLGLIDAVVTSEEL 189
             +I G  G+       G  K   A+++  LS  +  +      W  L   +   + E +
Sbjct: 152 NVLIDGVLGS-------G--KTWVALDV-CLSYKVQCKMDFKIFWLNLKNCN---SPETV 198

Query: 190 LKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLD 249
           L+   L  L          RS H ++    +   +  L+  RL   K       ++ CL 
Sbjct: 199 LE--MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR--RLLKSK------PYENCLL 248

Query: 250 VIEEGIVHGGYSGVLKEAKVFKELVMLD-TSRGLVHVFFAQRATSKVPNVTDIGLKPRGV 308
           V+            ++ AK +      + + + L+        T++   VTD  L     
Sbjct: 249 VLLN----------VQNAKAWN---AFNLSCKILL--------TTRFKQVTDF-LSAATT 286

Query: 309 RKVAVI--GGGLMGSGIAT--AHILNNIYVVL-KEVNSEYLLKGIKTIEANVRGLVTR-- 361
             +++      L    + +     L+     L +EV +    + +  I  ++R  +    
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR-LSIIAESIRDGLATWD 345

Query: 362 --GKLTQDKANNALKMLKGVLDYSEFKD--VDMVIEAVIESVPLKQKIFSELEKACPPHC 417
               +  DK    ++    VL+ +E++     + +     S  +   +            
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--FPPSAHIPTILL----------S 393

Query: 418 ILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMP--LLEIVRTERTSAQV---ILDL 472
           ++  +    D+ +V  K      ++          +P   LE+         +   I+D 
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKY-SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452

Query: 473 MTVGKIIKKVPVVVGNCTGFAVNRA---FFPY----------SQSARLLVSLGVDVFR-I 518
                I K                    F+ +           +   L   + +D FR +
Sbjct: 453 Y---NIPKTFD-----SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD-FRFL 503

Query: 519 DSAIRSFGLPIGPFQ-----LLDLAGYGVAAATSKEF---DKAFPDRSFQSPLVDLLLKS 570
           +  IR               L  L  Y       K +   +    +R   + ++D L K 
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFY-------KPYICDNDPKYERLVNA-ILDFLPKI 555

Query: 571 GRN 573
             N
Sbjct: 556 EEN 558

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 4e-07
 Identities = 54/384 (14%), Positives = 99/384 (25%), Gaps = 133/384 (34%)

Query: 370 NNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQ--KIFSELEKACPPHCILATNTSTID 427
            +   M K +L   E   +      ++    +    ++F  L                  
Sbjct: 36  KDVQDMPKSILSKEEIDHI------IMSKDAVSGTLRLFWTLL----------------- 72

Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMP---LLEIVRTERTSAQVILDLMTVGKIIKKVPV 484
                   S Q+ ++   F      +    L+  ++TE+    ++  +      I++   
Sbjct: 73  --------SKQEEMV-QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY-----IEQRDR 118

Query: 485 VVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLD-LAGYG-- 541
           +      +  N+ F  Y+      VS      ++  A+    L      L+D + G G  
Sbjct: 119 L------YNDNQVFAKYN------VSRLQPYLKLRQALLE--LRPAKNVLIDGVLGSGKT 164

Query: 542 -VAAAT--SKEFDKAFPDRSF-------QSP------LVDLLLKSGRNGKANGKGLYTYE 585
            VA     S +       + F        SP      L  LL +   N  +        +
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 586 KGSKPKPDPSVLPIIEECRRLSNIMPGGKVPIS------VTEKEIVEMILFPVVNESCRV 639
                      L I      L  ++              V   +      F   N SC++
Sbjct: 225 -----------LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA--F---NLSCKI 268

Query: 640 LEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGAN-YVYTSLKKWS---------Q 689
           L   +  R        V                D + A    + SL   S          
Sbjct: 269 L---LTTR-----FKQV---------------TDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 690 LYGNFF--KPSRFLEERATKGIPL 711
           L   +   +P   L        P 
Sbjct: 306 LLLKYLDCRPQD-LPREVLTTNPR 328

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 4e-04
 Identities = 36/289 (12%), Positives = 71/289 (24%), Gaps = 97/289 (33%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDV--KAIVLTGNG 58
            +  ++ +      +  +    P  N L +     L           +V           
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLV-----L----------LNVQNAKAW----- 259

Query: 59  GRFSGGFDINVFQKVHGAGDVSLM--PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLEL 116
                 F+++   K+       L+      V   ++        +      L       L
Sbjct: 260 ----NAFNLSC--KI-------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 117 AMGCHARIAAPKTQLGLPELTLGVIP----GFG-----GTQRLPRL--VG---LSKAIEM 162
                 +    + Q  LP   L   P            G         V    L+  IE 
Sbjct: 307 L----LKYLDCRPQ-DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 163 ML--LSKSITSEEGWKLGLI--DAVVTSEELLKVSRLWA-------LDIAA--------- 202
            L  L  +   +   +L +    A + +  L   S +W        + +           
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILL---SLIWFDVIKSDVMVVVNKLHKYSLVE 418

Query: 203 -RRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ-HQACLD 249
            + K    S+       S+           L+ K    N    H++ +D
Sbjct: 419 KQPKESTISIP------SIY----------LELKVKLENEYALHRSIVD 451

>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304} Length = 110

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 6/110 (5%)

Query: 476 GKIIKKVPVVVGNCTGFAVNRA--FFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGP 531
           G    + P +  +     +N     F     A  LV +GV     ID+AI+     P GP
Sbjct: 1   GHSKGR-PQIDSSKATDKINPMDFTFVEINEAVKLVEMGVATPQDIDTAIKLGLNRPFGP 59

Query: 532 FQLLDLAGYGVAAATSKEFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKG 580
           F+L    G    A   +E  K F  + F+ +  +              +G
Sbjct: 60  FELAKQFGAEQIAKRLEELAKQFGKKIFEPAKTLKEGKLEELLKAGKAEG 109

>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304} Length = 110

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 5/86 (5%)

Query: 624 IVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTS 683
                 F  +NE+ +++E G V    D+D A  LG++ P    G    A   GA  +   
Sbjct: 19  NPMDFTFVEINEAVKLVEMG-VATPQDIDTAIKLGLNRPF---GPFELAKQFGAEQIAKR 74

Query: 684 LKKWSQLYGN-FFKPSRFLEERATKG 708
           L++ ++ +G   F+P++ L+E   + 
Sbjct: 75  LEELAKQFGKKIFEPAKTLKEGKLEE 100

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A Length = 230

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 41/202 (20%), Positives = 63/202 (31%), Gaps = 56/202 (27%)

Query: 15  VAIITL---INPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--GGRFSGGFDINV 69
           V +  +   I                     A  +D+ +AI++  +  GGR     +I  
Sbjct: 10  VYVAQIKGQITSYTYDQ-------FDRYITIA-EQDNAEAIIIELDTPGGRADAMMNI-- 59

Query: 70  FQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE---GLALGGGLELAMGCHARIAA 126
                                V  I+  K P++  V      A   G  +A+G H    A
Sbjct: 60  ---------------------VQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMA 98

Query: 127 PKTQLGLPELTLGVIPGFGGTQRLPRLVG----------------LSKAIEMMLLSKSIT 170
           P T +G     LG        +  P +                   + A E +    S+T
Sbjct: 99  PGTSIGACRPILGYSQNGSIIEAPPAITNYFIAYIKSLAQESGRNATIAEEFITKDLSLT 158

Query: 171 SEEGWKLGLIDAVVTS-EELLK 191
            EE  K G+I+ V     ELLK
Sbjct: 159 PEEALKYGVIEVVARDINELLK 180

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	725
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	100.0
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	100.0
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	100.0
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	100.0
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	100.0
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	100.0
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	100.0
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	100.0
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	100.0
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	100.0
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	100.0
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	100.0
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	100.0
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	100.0
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	100.0
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	100.0
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	100.0
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	100.0
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	100.0
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	100.0
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	100.0
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	100.0
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	100.0
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	100.0
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	100.0
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	100.0
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	100.0
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	100.0
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	100.0
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	100.0
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	100.0
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	100.0
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	100.0
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	100.0
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	100.0
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	100.0
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	100.0
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	100.0
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	100.0
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	100.0
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	100.0
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	100.0
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	100.0
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	100.0
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	100.0
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	100.0
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	100.0
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	100.0
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	100.0
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	100.0
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	100.0
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	100.0
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	100.0
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	100.0
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	100.0
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	100.0
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	100.0
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	100.0
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	100.0
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	100.0
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	100.0
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	100.0
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	100.0
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	100.0
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	100.0
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	100.0
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	100.0
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	100.0
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	100.0
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	100.0
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	100.0
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	100.0
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	100.0
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	100.0
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	100.0
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	100.0
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	100.0
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	100.0
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	100.0
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	99.88
3ctv_A	110	HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura	99.87
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.81
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	99.79
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	99.77
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	99.76
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	99.76
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	99.72
3ctv_A	110	HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura	99.71
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	99.71
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.71
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.69
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.69
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.67
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.66
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.65
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.64
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.64
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.63
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.63
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	99.62
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.61
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	99.6
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	99.58
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	99.57
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	99.55
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	99.55
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.52
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.52
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	99.52
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	99.51
2f9y_B	304	Acetyl-coenzyme A carboxylase carboxyl transferas	99.51
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	99.51
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	99.5
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	99.5
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	99.5
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.49
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.49
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	99.47
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	99.47
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	99.45
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	99.45
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	99.45
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	99.45
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	99.44
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	99.44
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.44
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	99.44
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	99.43
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	99.43
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	99.43
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	99.42
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	99.42
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	99.4
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	99.4
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	99.4
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.38
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	99.38
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.37
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	99.36
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.36
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	99.35
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	99.35
2f9i_A	327	Acetyl-coenzyme A carboxylase carboxyl transferase	99.34
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.34
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.32
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	99.3
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	99.3
2f9y_A	339	Acetyl-COA carboxylase, carboxyltransferase alpha;	99.3
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	99.27
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	99.25
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.23
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	99.22
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	99.2
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	99.19
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	99.18
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	99.18
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	99.18
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	99.17
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	99.17
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	99.16
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	99.15
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	99.12
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	99.1
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	99.1
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	99.09
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	99.08
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	99.05
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	99.03
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	99.03
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	99.03
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	98.98
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	98.96
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	98.94
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	98.46
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	98.92
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	98.9
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.87
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	98.86
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	98.77
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	98.73
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	98.73
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	98.71
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	98.71
3tl2_A	315	Malate dehydrogenase; center for structural genomi	98.7
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	98.67
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	98.64
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	98.64
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	98.63
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	98.62
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.62
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	98.6
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	98.59
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	98.58
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	98.57
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	98.57
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.55
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	98.55
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	98.52
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	98.47
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	98.45
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	98.44
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	98.43
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	98.43
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	98.41
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	98.4
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	98.38
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	98.36
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	98.34
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	98.34
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	98.33
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	98.33
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	98.32
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	98.32
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	98.3
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	98.3
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	98.29
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	98.29
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	98.29
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	98.28
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	98.26
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	98.25
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	98.23
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	98.22
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	98.2
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	98.2
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	98.2
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	98.19
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	98.18
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	98.16
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	98.15
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	98.13
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	98.12
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	98.11
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	98.11
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	98.11
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	98.07
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	98.07
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	98.05
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	98.05
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	98.04
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.02
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	98.02
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	98.02
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.01
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.0
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	98.0
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	97.99
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.98
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	97.95
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	97.89
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	97.87
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	97.86
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	97.85
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	97.83
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	97.82
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.79
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.73
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.72
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	97.72
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	97.71
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	97.7
4gm2_A	205	ATP-dependent CLP protease proteolytic subunit; st	97.7
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.69
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	97.69
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.6
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.6
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.56
2duw_A	145	Putative COA-binding protein; ligand binding prote	97.56
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	97.54
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.54
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	97.51
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	97.51
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	97.46
2f9i_B	285	Acetyl-coenzyme A carboxylase carboxyl transferase	97.39
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	97.38
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	97.37
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	97.36
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.34
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	97.31
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	97.31
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	97.3
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	97.3
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	97.28
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	97.27
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	97.27
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	97.27
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	97.25
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	97.2
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.2
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	97.17
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	97.12
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	97.11
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	97.1
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.1
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.09
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	97.07
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	97.07
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.07
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	97.06
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	97.06
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	97.06
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	97.03
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	97.01
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.01
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.01
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	97.0
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	97.0
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	97.0
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	96.97
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	96.96
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	96.96
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	96.94
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	96.93
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	96.91
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	96.91
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	96.9
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.89
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	96.88
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	96.86
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	96.85
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	96.83
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	96.82
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	96.79
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	96.79
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	96.78
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	96.77
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	96.75
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	96.69
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.65
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	96.62
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	96.62
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	96.61
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	96.58
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	96.57
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	96.54
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.51
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	96.51
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	96.51
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	96.47
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	96.47
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.41
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	96.38
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	96.34
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	96.26
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.23
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	96.23
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.2
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	96.16
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	96.16
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.13
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	96.12
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	96.09
1ydw_A	362	AX110P-like protein; structural genomics, protein	96.09
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	96.08
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	96.06
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	96.03
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.02
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	96.02
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.01
4had_A	350	Probable oxidoreductase protein; structural genomi	95.99
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	95.98
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	95.96
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	95.86
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	95.86
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	95.83
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	95.81
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	95.78
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	95.75
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	95.73
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	95.71
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	95.64
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	95.59
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	95.56
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	95.51
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	95.49
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.48
2b0j_A	358	5,10-methenyltetrahydromethanopterin hydrogenase;	95.48
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	95.47
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	95.45
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	95.43
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	95.43
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	95.43
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	95.39
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	95.38
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	95.2
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	95.19
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	95.18
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	95.17
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	95.11
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	95.1
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	95.1
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	95.08
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	95.08
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	95.07
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.0
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	94.99
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	94.98
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	94.97
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	94.91
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	94.89
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	94.87
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	94.85
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	94.82
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	94.82
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	94.8
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	94.77
3l07_A	285	Bifunctional protein fold; structural genomics, ID	94.74
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	94.72
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	94.63
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	94.63
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	94.56
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	94.47
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	94.43
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	94.41
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	94.4
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	94.4
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	94.39
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	94.35
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	94.32
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	94.3
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	94.25
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	94.24
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	94.22
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	94.22
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	94.21
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	94.2
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	94.18
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	94.07
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	94.04
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	94.0
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	93.92
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	93.92
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	93.89
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	93.86
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	93.86
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	93.84
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	93.82
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	93.7
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	93.59
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	93.49
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	93.48
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	93.47
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	93.46
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	93.46
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	93.46
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	93.45
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	93.44
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	93.37
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	93.34
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	93.34
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	93.23
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	93.21
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	93.2
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	93.2
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	93.19
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	93.12
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	93.1
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	93.08
4hb9_A	412	Similarities with probable monooxygenase; flavin,	93.06
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	93.06
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	93.04
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	93.02
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	92.97
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	92.95
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	92.93
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	92.92
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	92.91
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	92.89
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	92.89
4h3v_A	390	Oxidoreductase domain protein; structural genomics	92.86
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	92.77
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	92.73
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	92.7
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	92.69
1lnq_A	336	MTHK channels, potassium channel related protein;	92.69
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	92.68
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	92.67
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	92.65
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	92.65
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	92.62
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	92.62
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	92.62
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	92.59
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	92.58
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	92.57
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	92.57
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	92.56
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	92.56
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	92.49
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	92.48
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	92.45
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	92.39
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	92.36
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	92.36

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=100.00  E-value=1e-133  Score=1163.97  Aligned_cols=688  Identities=34%  Similarity=0.559  Sum_probs=613.4

Q ss_pred             EEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHH
Q 004891            8 MEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSV   87 (725)
Q Consensus         8 ~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   87 (725)
                      ++. +|+|++||||||+.|+||.+|+++|.++++++++|++||+|||||.|++||+|+||+++......       ....
T Consensus        25 ~~~-~~~Va~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aGaDl~~~~~~~~~-------~~~~   96 (742)
T 3zwc_A           25 LRL-PHSLAMIRLCNPPVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSAFTPG-------LALG   96 (742)
T ss_dssp             EEC-STTEEEEEECCTTTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCSSSCCSSCSC-------SHHH
T ss_pred             EEe-eCCEEEEEeCCCcccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCccccCcChHhhhccChh-------HHHH
Confidence            344 78999999999999999999999999999999999999999999999999999999998654322       1234


Q ss_pred             HHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCC
Q 004891           88 ELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSK  167 (725)
Q Consensus        88 ~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~  167 (725)
                      .++ +.|.++||||||+|||+|+|||++|+|+||||||+++++|++||+++|++|++|++++|||++|..+|++|++||+
T Consensus        97 ~~~-~~i~~~~kPvIAai~G~a~GGG~elalacD~ria~~~a~fg~pev~lGl~Pg~ggt~rL~rlvG~~~A~~l~ltG~  175 (742)
T 3zwc_A           97 SLV-DEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITSGK  175 (742)
T ss_dssp             HHH-HHHHHCSSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHHCHHHHHHHHHHCC
T ss_pred             HHH-HHHHhCCCCEEEEECccchHHHHHHHHhcCEEEEcCCCEEECcccCcccCCCccHHHHHHHhhhHHHHHHHHHcCC
Confidence            566 6799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 004891          168 SITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQAC  247 (725)
Q Consensus       168 ~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  247 (725)
                      +++|+||+++||||+|+|.+. .+++.++|++++++++...+...+.  ..........+..+....+++.+++||+.++
T Consensus       176 ~i~a~eA~~~GLv~~vv~~d~-~~~A~~~A~~ia~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~k~~~~~~A~~~~  252 (742)
T 3zwc_A          176 YLSADEALRLGILDAVVKSDP-VEEAIKFAQKIIDKPIEPRRIFNKP--VPSLPNMDSVFAEAIAKVRKQYPGVLAPETC  252 (742)
T ss_dssp             CEEHHHHHHHTSCSEEESSCH-HHHHHHHHHHHTTSCSGGGCGGGSC--CCCCTTHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             chhHHHHHHcCCccEecCchh-hHHHHHHHHHHhcCCchhhhhhccc--ccccchhhhhHHHHHHHHhhhccchhHHHHH
Confidence            999999999999999998775 5788999999999987654433222  1122222234445555667788899999999


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCCCCCC---CCCCCCCCcceEEEEcCCCCcHHHH
Q 004891          248 LDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVT---DIGLKPRGVRKVAVIGGGLMGSGIA  324 (725)
Q Consensus       248 ~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~~~~---~~~~~~~~~~kIaVIG~G~mG~~iA  324 (725)
                      +++++.+...+++++++.|++.|.+++.|+++++++++|+++|+++|.+...   ..+..+++|+||+|||+|+||++||
T Consensus       253 ~~~v~~~~~~~~~~gl~~E~~~F~~l~~s~~~k~~~~aFf~~r~~~k~~~~~~~~~~~~~~~~i~~v~ViGaG~MG~gIA  332 (742)
T 3zwc_A          253 VRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIA  332 (742)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCBCTTCCBTTTCCCCCCCEEEEECCSHHHHHHH
T ss_pred             HHHHHHHhhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccccccccccccccCcccccEEEEEcccHHHHHHH
Confidence            9999999999999999999999999999999999999999999998865321   2345567899999999999999999


Q ss_pred             HHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCCCEEEEeccCChHHHHH
Q 004891          325 TAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQK  404 (725)
Q Consensus       325 ~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVIeavpe~~~~k~~  404 (725)
                      ..++++|++|+++|++++.++++.+.+.+.+++.+.++..+..  .....+++.+++++.+++||+|||||||++++|++
T Consensus       333 ~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~aDlVIEAV~E~l~iK~~  410 (742)
T 3zwc_A          333 ISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQ--ASAKPKLRFSSSTKELSTVDLVVEAVFEDMNLKKK  410 (742)
T ss_dssp             HHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTC--CCCCCCEEEESCGGGGGSCSEEEECCCSCHHHHHH
T ss_pred             HHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccch--hhhhhhhcccCcHHHHhhCCEEEEeccccHHHHHH
Confidence            9999999999999999999999999999888887776554422  22346788888999999999999999999999999


Q ss_pred             HHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeE
Q 004891          405 IFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPV  484 (725)
Q Consensus       405 v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v  484 (725)
                      +|++|++++++++|++||||+++++++++.+.+|+||+|+|||||++.+|+|||++++.|++++++.+.++.+.+||+||
T Consensus       411 vf~~le~~~~~~aIlASNTSsl~i~~ia~~~~~p~r~ig~HFfnP~~~m~LVEvi~g~~Ts~e~~~~~~~~~~~lgK~pV  490 (742)
T 3zwc_A          411 VFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGV  490 (742)
T ss_dssp             HHHHHHHHSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEECCSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHhhcCCCCceEEecCCcCChHHHHhhcCCccccccccccCCCCCCceEEEecCCCCCHHHHHHHHHHHHHhCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCcchhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHhhCCCC-------
Q 004891          485 VVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR-------  557 (725)
Q Consensus       485 ~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv~~~dID~~~~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~-------  557 (725)
                      +++|+||||+||++.++++|+++++++|+++++||.++.++|+|||||+++|++|||+.+++.+.+....++.       
T Consensus       491 ~vkd~pGFi~NRi~~~~~~ea~~l~~eG~~~~~id~a~~~~G~pmGPf~l~D~vGlDv~~~v~~~~~~~~~~~~~~~~~~  570 (742)
T 3zwc_A          491 VVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVR  570 (742)
T ss_dssp             ECCCSTTTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHTTSSSTTSCTTCCTT
T ss_pred             ccCCCCCccHHHHhhHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCChHHHHHHhCHHHHHHHHHHHHhhCcccCccchhh
Confidence            9999999999999999999999999999999999999988999999999999999999999999876544321       


Q ss_pred             ----CCCcHHHHHHHHcCCCccccCceeeeccCCC--CCCCCCCchhHHHHHhhhccCCCCCCCCccccHHHHHHHHHHH
Q 004891          558 ----SFQSPLVDLLLKSGRNGKANGKGLYTYEKGS--KPKPDPSVLPIIEECRRLSNIMPGGKVPISVTEKEIVEMILFP  631 (725)
Q Consensus       558 ----~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~  631 (725)
                          ..+++++++|+++|++|+|||+|||+|+++.  ...+|+++..++...+....+.+.     .+++++|.+|++++
T Consensus       571 ~~~~~~~~~l~~~mv~~G~lG~KtG~GFY~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ei~~R~l~~  645 (742)
T 3zwc_A          571 KRGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQR-----TISKEEILERCLYS  645 (742)
T ss_dssp             EETTEECCCHHHHHHTTTCCBGGGTBSSSEESSTTCSCEECCHHHHHHHHHHHHHHTCCCC-----CCCHHHHHHHHHHH
T ss_pred             hcccccccHHHHHHHHCCCccccCCCeeEECCCCCCccCCCChHHHHHHHHHhhhcCCCcC-----CCCHHHHHHHHHHH
Confidence                1156799999999999999999999997643  345777777776655544333332     57899999999999


Q ss_pred             HHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCC--CCCCCHHHHHHHHcCC
Q 004891          632 VVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN--FFKPSRFLEERATKGI  709 (725)
Q Consensus       632 ~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~--~~~p~~~l~~~~~~g~  709 (725)
                      ++||+++||+|||+.+++|||.+|++|+|||+|+||||+|+|.+|++.+++.|++|.+++|+  +|+|+++|++|+++|+
T Consensus       646 ~~nEa~~~l~egI~~~~~diD~a~~~G~Gfp~~~GGp~~~~D~~G~~~~v~~l~~l~~~~g~~~~~~P~~~L~~ma~~G~  725 (742)
T 3zwc_A          646 LINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQGS  725 (742)
T ss_dssp             HHHHHHHHHHTTSSSCHHHHHHHHHHHSCCCGGGCCHHHHHHHHCHHHHHHHHHHHHHHCTTCGGGSCCHHHHHHHHTTC
T ss_pred             HHHHHHHHhhcCcCCCHHHHHHHHHhCcCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999996  8999999999999986


Q ss_pred             -CCCCC
Q 004891          710 -PLSAP  714 (725)
Q Consensus       710 -gf~~~  714 (725)
                       +||+|
T Consensus       726 ~~f~~~  731 (742)
T 3zwc_A          726 PPLKEW  731 (742)
T ss_dssp             CCGGGH
T ss_pred             Cccccc
Confidence             57877

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=100.00  E-value=1.7e-125  Score=1103.61  Aligned_cols=707  Identities=58%  Similarity=0.961  Sum_probs=597.8

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-CCcCCCCchhhhhccCC--C
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVFQKVHGA--G   77 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~-~F~aG~Dl~~~~~~~~~--~   77 (725)
                      |+++.+.++..+++|++||||||+.|+||.+|+++|.+++++++.|+++|+||||| |+ +||+|+|++++......  .
T Consensus         4 ~~~~~i~~~~~~~~va~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~~~   82 (725)
T 2wtb_A            4 RTKGKTVMEVGGDGVAVITLINPPVNSLSFDVLYNLKSNYEEALSRNDVKAIVITG-AKGRFSGGFDISGFGEMQKGNVK   82 (725)
T ss_dssp             ---CEEEEEECTTSEEEEEEECTTTTCCCHHHHHHHHHHHHHHTTCTTCCEEEEEE-SSSCCBCSSCC------------
T ss_pred             CcCCeEEEEEeeCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCcccCCcCHHHHhcccchhhh
Confidence            56777899833789999999999889999999999999999999999999999999 76 99999999998542211  0


Q ss_pred             cccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHH
Q 004891           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (725)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~  157 (725)
                      ....+....+.++ ++|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus        83 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~Ggt~~L~rlvG~~  161 (725)
T 2wtb_A           83 EPKAGYISIDIIT-DLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLT  161 (725)
T ss_dssp             CCSSSHHHHHCCC-CCCCTSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred             hHHHHHHHHHHHH-HHHHhCcCcEEEEECCccCcccHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhcCHH
Confidence            0112222333444 568899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcC-ch--hhhhhhccCCCCChHHHHHHHHHHHHHH
Q 004891          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR-KP--WIRSLHRTDKLGSLSEAREVLKLARLQA  234 (725)
Q Consensus       158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (725)
                      +|++|++||++++|+||+++||||+|||++++.+++.++|++++..+ +.  ..+.  + .+..........+..++...
T Consensus       162 ~A~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~--~-~~~~~~~~~~~~~~~a~~~~  238 (725)
T 2wtb_A          162 KALEMILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIVGRRKPWVSSVSK--T-DKLPPLGEAREILTFAKAQT  238 (725)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTSCSEECCTTTHHHHHHHHHHHHHTTSSCCCCGGGC--C-TTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCHHHHHHCCccceEcChhHHHHHHHHHHHHHHhcCCChhhhhhh--c-cccCccchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998872 22  1210  0 01112222333566666666


Q ss_pred             HHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcceEEEE
Q 004891          235 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVI  314 (725)
Q Consensus       235 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~~~~~~~~~~~~~~kIaVI  314 (725)
                      ++..+.|||+..+|++++.+...+++++++.|.+.|..++.|+++++++++|++||+++|.++....+..+++|+||+||
T Consensus       239 ~~~~~g~pA~~~~k~~~~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~~~~~~~~~~~~~~~~~kV~VI  318 (725)
T 2wtb_A          239 LKRAPNMKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVTDRGLVPRKIKKVAII  318 (725)
T ss_dssp             HHHCTTCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCTTTSSSCCCCCCCCCEEEE
T ss_pred             HHhccCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcchhHHHHHHHhhhhhhhcccCCCCccccccccCcEEEEE
Confidence            54444599999999999999999999999999999999999999999999999999999988632113345678999999


Q ss_pred             cCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCCCEEEEe
Q 004891          315 GGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEA  394 (725)
Q Consensus       315 G~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVIea  394 (725)
                      |+|.||++||..++++|++|++||++++.++++.+.+++.+++++++|.+++++.....++++.+++++.+++||+||+|
T Consensus       319 GaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~~~~aDlVIea  398 (725)
T 2wtb_A          319 GGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEA  398 (725)
T ss_dssp             CCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSSGGGTTCSEEEEC
T ss_pred             cCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCHHHHCCCCEEEEc
Confidence            99999999999999999999999999999999988899999999999999888888888999999999889999999999


Q ss_pred             ccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCCHHHHHHHHH
Q 004891          395 VIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMT  474 (725)
Q Consensus       395 vpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~~~~~~  474 (725)
                      |||+.++|+++++++.+++++++||+||||+++++++++.+.++++|+|+|||+|++.++++|+++|+.|++++++.+.+
T Consensus       399 Vpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~p~~~iG~hf~~P~~~~~lvevv~g~~t~~e~~~~~~~  478 (725)
T 2wtb_A          399 VIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLD  478 (725)
T ss_dssp             CCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTCSCTTTEEEEEECSSTTTCCEEEEEECSSCCHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHHhcCCCCEEEecCCCCcccCceEEEEECCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999988889999999999999999999999999999999999999


Q ss_pred             HHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHhhC
Q 004891          475 VGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAF  554 (725)
Q Consensus       475 l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv~~~dID~~~~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~  554 (725)
                      +++.+|++|+++++.|||++||++.++++|++.++++|+++++||.++.++|+|||||+++|++|||+.+++.+.+++.+
T Consensus       479 l~~~lGk~~v~v~d~~Gfi~Nril~~~~~Ea~~l~~~G~~~e~id~~~~~~g~p~Gp~~l~D~vGld~~~~i~~~~~~~~  558 (725)
T 2wtb_A          479 VGKKIKKTPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRAISKFGMPMGPFRLCDLVGFGVAIATATQFIENF  558 (725)
T ss_dssp             HHHHTTCEEEEEESSTTTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred             HHHHhCCEEEEECCCccHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCCCHHHHHHHhchHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999988999999999999999999999999999988


Q ss_pred             CCC-CCCcHHHHHHHHcCCCccccCceeeeccCCCCCCCCCCchhHHHHHhhhccCCCCCCCCccccHHHHHHHHHHHHH
Q 004891          555 PDR-SFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECRRLSNIMPGGKVPISVTEKEIVEMILFPVV  633 (725)
Q Consensus       555 ~~~-~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~  633 (725)
                      +++ +.| +++++|+++|++|+|||+|||+|++.....+|+++..++...+....+.+. ..++.+++++|.+|++++++
T Consensus       559 ~~~~~~~-~~l~~~v~~g~lG~k~g~GfY~y~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~r~l~~~~  636 (725)
T 2wtb_A          559 SERTYKS-MIIPLMQEDKRAGEATRKGFYLYDDKRKAKPDPELKKYIEKARSISGVKLD-PKLANLSEKDIIEMTFFPVV  636 (725)
T ss_dssp             GGGCCCC-THHHHHHTTC---------------------CCCCCTTSHHHHHHTCCSCC-CTTTTCCHHHHHHHHHHHHH
T ss_pred             CCccCCh-HHHHHHHHCCCceecCCceeEeCCCCccCCCCHHHHHHHHhhhhhccccch-hhcccCCHHHHHHHHHHHHH
Confidence            876 446 999999999999999999999996322224778887776543321111100 11224688999999999999


Q ss_pred             HHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCCCCCC
Q 004891          634 NESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSA  713 (725)
Q Consensus       634 ~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~gf~~  713 (725)
                      ||+++|++|||+.+++|||.+|++|+|||+|+||||+|+|.+|++.+++.++.+.+.+|++|.|+++|++|+++|++||.
T Consensus       637 nea~~~l~egi~~~~~diD~~~~~G~g~p~~~GGp~~~~d~~G~~~~~~~~~~~~~~~g~~~~p~~~l~~~~~~g~~f~~  716 (725)
T 2wtb_A          637 NEACRVFAEGIAVKAADLDIAGIMGMGFPPYRGGIMFWADSIGSKYIYSRLDEWSKAYGEFFKPCAFLAERGSKGVLLSA  716 (725)
T ss_dssp             HHHHHHHHTTSSSCHHHHHHHHHHHHCCCGGGCCHHHHHHHHCHHHHHHHHHHHHHHHCGGGCCCHHHHHHHHHTCCSSS
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHcCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             C
Q 004891          714 P  714 (725)
Q Consensus       714 ~  714 (725)
                      .
T Consensus       717 ~  717 (725)
T 2wtb_A          717 P  717 (725)
T ss_dssp             C
T ss_pred             h
Confidence            4

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=100.00  E-value=9.4e-125  Score=1097.20  Aligned_cols=695  Identities=30%  Similarity=0.525  Sum_probs=616.1

Q ss_pred             CCcEEEEEecCcEEEEEeCCC--CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-CCcCCCCchhhhhccCCC--
Q 004891            3 APRVTMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVFQKVHGAG--   77 (725)
Q Consensus         3 ~~~i~~~~~~~~v~~i~l~~p--~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~-~F~aG~Dl~~~~~~~~~~--   77 (725)
                      .+.+.++..+++|++||||||  +.|+||.+|+++|.+++++++.|+++|+||||| |+ +||+|+|++++.......  
T Consensus         5 ~~~i~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~~~   83 (715)
T 1wdk_A            5 GKAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSS-GKDVFIVGADITEFVENFKLPDA   83 (715)
T ss_dssp             CSSEEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEE-SSSSSBBCCCHHHHHHHTTSCHH
T ss_pred             CCeEEEEEeeCCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCeEeCCcCHHHHhhcccCCHH
Confidence            356888833789999999999  589999999999999999999999999999999 77 999999999986532111  


Q ss_pred             cccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHH
Q 004891           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (725)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~  157 (725)
                      ....+....+.++ ++|.++||||||+|||+|+|||++|+|+||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus        84 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~ggt~~L~r~vG~~  162 (715)
T 1wdk_A           84 ELIAGNLEANKIF-SDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVD  162 (715)
T ss_dssp             HHHHHHHHHHHHH-HHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEeCCCEEeChhhccCCCCCccHHHHHHHHhCHH
Confidence            1111223345666 679999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccC--CC-CChHHHHH-HHHHHHH-
Q 004891          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTD--KL-GSLSEARE-VLKLARL-  232 (725)
Q Consensus       158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~--~~-~~~~~~~~-~~~~~~~-  232 (725)
                      +|++|++||++++|+||+++||||+|||++++.+++.++|++++....++.... +..  +. .+ ..... .+..++. 
T Consensus       163 ~A~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~-~~~~~p~~~~-~~~~~~~~~~~k~~  240 (715)
T 1wdk_A          163 NAVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKR-QPKLEKLKLN-AIEQMMAFETAKGF  240 (715)
T ss_dssp             HHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSCHHHHH-GGGGSCCSCC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHhhccCCcchhc-ccccCccccC-chhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988621111100 100  10 01 01111 2444444 


Q ss_pred             HHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcceEE
Q 004891          233 QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVA  312 (725)
Q Consensus       233 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~~~~~~~~~~~~~~kIa  312 (725)
                      ..|+++++||||..+|++++.+...+++++++.|.+.|..++.|+++++++++|++||+++|.++.+. + .+++++||+
T Consensus       241 ~~~~~~g~~~A~~~~k~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~~~~~~~~-~-~~~~i~kV~  318 (715)
T 1wdk_A          241 VAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKKKAKVYD-K-IAKDVKQAA  318 (715)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCCCSSEE
T ss_pred             HHHhcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhccccCCC-C-ccccCCEEE
Confidence            34688999999999999999999999999999999999999999999999999999999998765222 2 446789999


Q ss_pred             EEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCCCEEE
Q 004891          313 VIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVI  392 (725)
Q Consensus       313 VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVI  392 (725)
                      |||+|+||++||..++++|++|++||++++.++++.+.+++.+++++++|.+++++.+..+++++.+++++.+++||+||
T Consensus       319 VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~~~~aDlVI  398 (715)
T 1wdk_A          319 VLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVV  398 (715)
T ss_dssp             EECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTGGGCSEEE
T ss_pred             EECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCHHHHCCCCEEE
Confidence            99999999999999999999999999999999999889999999999999999988888888899888888899999999


Q ss_pred             EeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCCHHHHHHH
Q 004891          393 EAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDL  472 (725)
Q Consensus       393 eavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~~~~  472 (725)
                      +||||+.++|+++++++.+++++++||+||||+++++++++.+.++++|+|+|||+|++.++++|+++|+.|++++++.+
T Consensus       399 eaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~~~~~ig~hf~~P~~~~~lvevv~g~~t~~e~~~~~  478 (715)
T 1wdk_A          399 EAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATT  478 (715)
T ss_dssp             ECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEEEECSSCCHHHHHHH
T ss_pred             EcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHHHHHHhcCccceEEEEccCCcccCceEEEEECCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999888899999999999999999999999999999999999


Q ss_pred             HHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHh
Q 004891          473 MTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDK  552 (725)
Q Consensus       473 ~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv~~~dID~~~~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~  552 (725)
                      .++++.+|+.|+++++.|||++||++.++++|++.++++|+++++||.++.++|+|||||+++|.+|||+.+++++.+++
T Consensus       479 ~~l~~~lGk~~v~v~d~~Gfi~Nril~~~~~Ea~~l~~~G~~~~~id~~~~~~G~p~Gp~~l~D~vGld~~~~i~~~~~~  558 (715)
T 1wdk_A          479 VAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAE  558 (715)
T ss_dssp             HHHHHHTTCEEEEEESCTTTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCEeEEEcCCCChhhhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCCCHHHHHHHhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999889999999999999999999999999998


Q ss_pred             hCCCCCCCc--HHHHHHHHcCCCccccCceeeecc-C--CC-CCCCCCCchhHHHHHhhhccCCCCCCCCccccHHHHHH
Q 004891          553 AFPDRSFQS--PLVDLLLKSGRNGKANGKGLYTYE-K--GS-KPKPDPSVLPIIEECRRLSNIMPGGKVPISVTEKEIVE  626 (725)
Q Consensus       553 ~~~~~~~~~--~~l~~~v~~g~~G~k~g~Gfy~y~-~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  626 (725)
                      .+++++.|+  +++++|+++|++|+|||+|||+|+ +  ++ ...+|+++..++...+.     +  .  ..+++++|.+
T Consensus       559 ~~~~~~~~~~~~~l~~~v~~g~lG~k~g~GfY~y~~~~~g~~~~~~~~~~~~~~~~~~~-----~--~--~~~~~~~i~~  629 (715)
T 1wdk_A          559 GFPDRMKDDRRSAIDALYEAKRLGQKNGKGFYAYEADKKGKQKKLVDSSVLEVLKPIVY-----E--Q--RDVTDEDIIN  629 (715)
T ss_dssp             HCHHHHCCSSCCHHHHHHHTTCCBTTTTBSSSEEC-------CEECCTHHHHHHGGGCC-----C--C--CCCCHHHHHH
T ss_pred             hcCCccCCChHHHHHHHHhCchhhhcCCcEEEecccCcCCCCcCCCCHHHHHHHhhhcc-----C--c--cCCCHHHHHH
Confidence            888766677  899999999999999999999996 3  22 23466666655532211     1  1  1467899999


Q ss_pred             HHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 004891          627 MILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERAT  706 (725)
Q Consensus       627 r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~  706 (725)
                      |++++++||+++|+++||+.+++|||.+|++|+|||+|+||||+|+|.+|++.+++.++.+ +.+|++|.|+++|++|++
T Consensus       630 r~l~~~~nea~~~l~egi~~~~~diD~~~~~G~g~p~~~GGp~~~~d~~G~~~~~~~~~~~-~~~g~~~~p~~~l~~~~~  708 (715)
T 1wdk_A          630 WMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQY-AELGALYHPTAKLREMAK  708 (715)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHCHHHHHHHHHHT-GGGCGGGCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCCCCHHHHHHHhCHHHHHHHHHHH-HhcCCCCCCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999 889999999999999999


Q ss_pred             cCCCCCC
Q 004891          707 KGIPLSA  713 (725)
Q Consensus       707 ~g~gf~~  713 (725)
                      +|++||.
T Consensus       709 ~g~~f~~  715 (715)
T 1wdk_A          709 NGQSFFG  715 (715)
T ss_dssp             TTCCSCC
T ss_pred             cCCCCCC
Confidence            9999984

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=100.00  E-value=2.8e-79  Score=670.94  Aligned_cols=413  Identities=28%  Similarity=0.472  Sum_probs=363.5

Q ss_pred             HHhhhhhcCCCCCC---CC-CCCCCCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHc
Q 004891          286 FFAQRATSKVPNVT---DI-GLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTR  361 (725)
Q Consensus       286 F~~~r~~~~~~~~~---~~-~~~~~~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~  361 (725)
                      |.++|..+++..+.   .+ ...+++++||+|||+|+||++||..++++|++|++||++++   ++.+.+++.+++++++
T Consensus        28 ~~a~~~~~~w~~p~~~~~~~~~~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e---~a~~~i~~~l~~~~~~  104 (460)
T 3k6j_A           28 MEAHSLAGQWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ---RCKQELEVMYAREKSF  104 (460)
T ss_dssp             HHTTCCTTSCBCSTTSCBTTSCCCCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH---HHHHHHHHHHHHHHHT
T ss_pred             HhHHHhhccccCCCCccccccCCcccCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH---HHHHHHHHHHHHHHHc
Confidence            34666665543221   11 23457889999999999999999999999999999999998   4566788889999999


Q ss_pred             CCCCHHHHHHhhcCcccccCcccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcE
Q 004891          362 GKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRI  441 (725)
Q Consensus       362 g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~  441 (725)
                      |.++.++.+..+++++++++++++++||+|||||||++++|+++|++|.+.+++++||+||||+++++++++.+.+|++|
T Consensus       105 G~l~~~~~~~~~~~i~~t~dl~al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~~ia~~~~~p~r~  184 (460)
T 3k6j_A          105 KRLNDKRIEKINANLKITSDFHKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVLRDPSNL  184 (460)
T ss_dssp             TSCCHHHHHHHHTTEEEESCGGGCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHHTTSSSGGGE
T ss_pred             CCCCHHHHHHHhcceEEeCCHHHHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHHHHHHhccCCcce
Confidence            99999999999999999999988999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHH-HcCCCHHHHHH
Q 004891          442 IGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLV-SLGVDVFRIDS  520 (725)
Q Consensus       442 ig~h~~~p~~~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~-~~Gv~~~dID~  520 (725)
                      +|+|||+|++.++++||++++.|++++++.+.++++.+||+||+++|.|||++||++.++++||+.++ ++|+++++||.
T Consensus       185 iG~HffnPv~~m~LvEIv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~pGfi~Nril~~~~~EA~~l~~~~Ga~~e~ID~  264 (460)
T 3k6j_A          185 VGIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGNCKSFVFNRLLHVYFDQSQKLMYEYGYLPHQIDK  264 (460)
T ss_dssp             EEEECCSSTTTCCEEEEECCSSCCHHHHHHHHHHHHHTTCEEEEESSCCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHH
T ss_pred             EEEEecchhhhCCEEEEEeCCCCCHHHHHHHHHHHHHhCCEEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999 67999999999


Q ss_pred             HHHhcCCCccHHHHHHhhchHHHHHHHHHHHhhCCCCCCCcHHHHHHHHcCCCccccCceeeeccCCCC-CCCCCCchhH
Q 004891          521 AIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK-PKPDPSVLPI  599 (725)
Q Consensus       521 ~~~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~~-~~~~~~~~~~  599 (725)
                      ++.++|+|||||+++|++|||+.+++.+.+.      ..+++++++|+++|++|+|||+|||+|+++++ +.+++++..+
T Consensus       265 a~~~~G~pmGPf~l~D~vGlD~~~~i~~~~~------~~~~~~l~~~v~~G~lG~KtG~GFY~y~~~~~~~~~~~~~~~~  338 (460)
T 3k6j_A          265 IITNFGFLMGPMTVADMNGFDVMEKLKKENG------LEPNPIEKEMWRLKRYGRKTNKGFYKYDDKTQRKENDTEMEQI  338 (460)
T ss_dssp             HHHHHTBSSCHHHHHHHHCTHHHHHHHHHSC------CCCCHHHHHHHHTTCCBGGGTBSSSEECTTTCCEECCHHHHHH
T ss_pred             HHHHcCCCcCHHHHHHHhchHHHHHHHHHhc------cCchHHHHHHHHCCCCeeecCCEEEECCCCCCCCCCCHHHHHH
Confidence            9988999999999999999999999988761      13568999999999999999999999987543 4566666666


Q ss_pred             HHHHhhhccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHH
Q 004891          600 IEECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANY  679 (725)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~  679 (725)
                      +...+....+.+     +.+++++|.+|++++++||+++||+|||+++++|||.+|++|+|||+|+||||+|+|.+|++.
T Consensus       339 ~~~~~~~~~~~~-----~~~~~~~i~~r~l~~~~nea~~~l~egi~~~~~diD~~~~~G~GfP~~~GGp~~~~d~~G~~~  413 (460)
T 3k6j_A          339 IRRVSQNAKSNI-----QIINDQDVINFMLYPTVNEGYRCIEEGVISNESLIDIMFILGFGWPIHSGGPMRFGKTEGLDK  413 (460)
T ss_dssp             HHHC---CCCSS-----CCCSHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTCCCSEETTEECBCSSCBSSHH
T ss_pred             HHHHHHhcCCCc-----ccCChHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhHHHHhcCCCCccccCHHHHHHHhCHHH
Confidence            543322111111     257899999999999999999999999998999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCC--CCCCHHHHHHHHcCCCCC
Q 004891          680 VYTSLKKWSQLYGNF--FKPSRFLEERATKGIPLS  712 (725)
Q Consensus       680 ~~~~~~~~~~~~~~~--~~p~~~l~~~~~~g~gf~  712 (725)
                      +++.++.|++.+|++  |+|+++|++|+++|+-|-
T Consensus       414 ~~~~l~~l~~~~g~~~~~~p~~~L~~~a~~g~~~~  448 (460)
T 3k6j_A          414 IANMLVHWSSLEPKESAYIVADALKTANVSTGSSG  448 (460)
T ss_dssp             HHHHHHHHHHHCTTCGGGSCCHHHHHHC-------
T ss_pred             HHHHHHHHHHHhCCCCCCCCCHHHHHHHHcCCCcc
Confidence            999999999999987  999999999998887654

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=100.00  E-value=4.5e-74  Score=640.70  Aligned_cols=431  Identities=33%  Similarity=0.533  Sum_probs=371.1

Q ss_pred             CCHhHHHHHHHHHhhhhhcCCCCC---CCCCCCCCCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHH
Q 004891          275 MLDTSRGLVHVFFAQRATSKVPNV---TDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (725)
Q Consensus       275 ~s~~~~~~i~aF~~~r~~~~~~~~---~~~~~~~~~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i  351 (725)
                      .|++++++++.|+.+|..+|.+..   ...+..+++++||+|||+|.||++||..|+++|++|++||++++.++++.+.+
T Consensus         1 ~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i   80 (463)
T 1zcj_A            1 ASGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKII   80 (463)
T ss_dssp             -CHHHHHHHHHHHGGGGGGSCBCTTCCBTTTCCCCCCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCccCCCccccccCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHH
Confidence            489999999999999999885531   11123456789999999999999999999999999999999999999998888


Q ss_pred             HHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHH
Q 004891          352 EANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  431 (725)
Q Consensus       352 ~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l  431 (725)
                      ++.++..+++|.++..+.+..  ....+++++.+++||+||+|||++.++|+++++++.+.+++++||+||||+++++++
T Consensus        81 ~~~l~~~~~~g~~~~~~~~~~--~~~i~~~~~~~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~~~~~l  158 (463)
T 1zcj_A           81 TFTLEKEASRAHQNGQASAKP--KLRFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDI  158 (463)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCC--CEEEESCGGGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHH--HhhhcCCHHHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCcCHHHH
Confidence            777777766654332211111  122356677889999999999999999999999999999999999999999999999


Q ss_pred             hcccCCCCcEEEEecCCCCCCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHc
Q 004891          432 GEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSL  511 (725)
Q Consensus       432 ~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~  511 (725)
                      ++.+.++++++|+|||+|++.++++|+++|+.|++++++.+.++++.+|++++++++.+||++||++.++.+|++.++++
T Consensus       159 a~~~~~~~~~ig~hf~~P~~~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~~~~gfi~Nrll~~~~~ea~~l~~~  238 (463)
T 1zcj_A          159 ASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEE  238 (463)
T ss_dssp             HTTSSCGGGEEEEEECSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEBCCSTTTTHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhcCCcceEEeecCCCcccceeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEECCCccHHHHHHHHHHHHHHHHHHHc
Confidence            99888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHH---hhC-------CCCC-CCcHHHHHHHHcCCCccccCce
Q 004891          512 GVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFD---KAF-------PDRS-FQSPLVDLLLKSGRNGKANGKG  580 (725)
Q Consensus       512 Gv~~~dID~~~~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~---~~~-------~~~~-~~~~~l~~~v~~g~~G~k~g~G  580 (725)
                      |+++++||.+++++|+|+|||+++|.+|||+.+++++.+.   ..+       .+.. .+++++++|+++|++|+|||+|
T Consensus       239 G~~~~~id~~~~~~g~p~Gp~~l~D~~GlD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~lG~k~g~G  318 (463)
T 1zcj_A          239 GSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKG  318 (463)
T ss_dssp             TCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHTTSSSSCCCTTCCTTEETTEECCTHHHHHHHTTCCBGGGTBS
T ss_pred             CCCHHHHHHHHHHcCCCCcHHHHHHHcchHHHHHHHHHHhhhcccccccccccccccccchHHHHHHHHCCCCeeecCCe
Confidence            9999999999999999999999999999999999999872   221       1111 1368999999999999999999


Q ss_pred             eeeccCCCC--CCCCCCchhHHHHHhhhccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHh
Q 004891          581 LYTYEKGSK--PKPDPSVLPIIEECRRLSNIMPGGKVPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLG  658 (725)
Q Consensus       581 fy~y~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g  658 (725)
                      ||+|++.++  ...++++..++..........+     ..++..+|+||++.+++|||++|+++||+++++|||.+|++|
T Consensus       319 fy~y~~~g~~~~~~~~~~~~~~~~~~~~~g~~~-----~~~~~g~i~~Rll~~~~nEa~~~l~eGIa~~~~dID~a~~~G  393 (463)
T 1zcj_A          319 WYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQ-----RTISKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHG  393 (463)
T ss_dssp             SEEESSTTCSCEEECHHHHHHHHHHHHHTTCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHTTSBSCHHHHHHHHHHH
T ss_pred             eccCCCCCCCCCCCCHHHHHHHHHHHHHcCCCc-----ccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence            999964222  2356666666544432222212     135788999999999999999999999998899999999999


Q ss_pred             cCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCC--CCCCCHHHHHHHHcCCCCC
Q 004891          659 MSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN--FFKPSRFLEERATKGIPLS  712 (725)
Q Consensus       659 ~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~--~~~p~~~l~~~~~~g~gf~  712 (725)
                      +|||+|+||||+|+|.+|++.+++.++.|++.+++  +|+|+++|++|+++|+.|.
T Consensus       394 ~G~p~~~gGP~~~~D~~Gl~~~~~~~~~l~~~~g~~~~~~p~~lL~~~v~~G~~~~  449 (463)
T 1zcj_A          394 YGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQGSPPL  449 (463)
T ss_dssp             SCCCGGGCCHHHHHHHHCHHHHHHHHHHHHHHCTTCGGGSCCHHHHHHHHTTCCCG
T ss_pred             CCCCCCCcChHHHHHHhCHHHHHHHHHHHHHHhCCCccCCCCHHHHHHHHcCCCcc
Confidence            99999999999999999999999999999999998  8999999999999999997

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=100.00  E-value=6.6e-73  Score=630.74  Aligned_cols=405  Identities=32%  Similarity=0.497  Sum_probs=356.0

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccc
Q 004891          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (725)
Q Consensus       306 ~~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l  385 (725)
                      ++++||+|||+|+||++||..++++|++|++||++++.++++.+.+.+.+++++++|.++.++.+..+++++++++++.+
T Consensus         3 m~~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (483)
T 3mog_A            3 LNVQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIHAL   82 (483)
T ss_dssp             -CCCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGGGG
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHHHh
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999889


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCC
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS  465 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~  465 (725)
                      ++||+||+||||+.++|+++++++.+.+++++||+||||+++++.+++.+.++++++|+|||+|++.++++|+++++.|+
T Consensus        83 ~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~~ia~~~~~p~~~ig~hf~~Pa~v~~Lvevv~g~~Ts  162 (483)
T 3mog_A           83 AAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATA  162 (483)
T ss_dssp             GGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTSSSGGGEEEEEECSSTTTCCEEEEEECSSCC
T ss_pred             cCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHHHHHHHccCccceEEeeecChhhhCCeEEEecCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHH
Q 004891          466 AQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVA  543 (725)
Q Consensus       466 ~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv-~~~dID~~~-~~~G~p~Gpf~~~D~~Gld~~  543 (725)
                      +++++.+.++++.+|++++++++.|||++||++.++++|++.++++|. ++++||.++ .++|||||||+++|++|+|+.
T Consensus       163 ~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~Nr~l~~~~~Ea~~l~~~g~~~~~~id~a~~~~~G~p~GP~~l~D~~Gld~~  242 (483)
T 3mog_A          163 AEVVEQLCELTLSWGKQPVRCHSTPGFIVNRVARPYYSEAWRALEEQVAAPEVIDAALRDGAGFPMGPLELTDLIGQDVN  242 (483)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEESCTTTTHHHHTHHHHHHHHHHHHTTCSCHHHHHHHHHHTTCCSSCHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHhCCEEEEEeccCcchHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhcCCCCCCHHHHHHHhchHHH
Confidence            999999999999999999999999999999999999999999999986 899999999 689999999999999999999


Q ss_pred             HHHHHHHHhhC-CCCCC-CcHHHHHHHHcCCCccccCceeeeccCCCCCCC-----CCCchhHHHHH-------------
Q 004891          544 AATSKEFDKAF-PDRSF-QSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKP-----DPSVLPIIEEC-------------  603 (725)
Q Consensus       544 ~~~~~~l~~~~-~~~~~-~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~~~~~-----~~~~~~~~~~~-------------  603 (725)
                      +++++.+++.+ +++.+ |++++++|+++|++|+|||+|||+|+++.....     ++....++...             
T Consensus       243 ~~v~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  322 (483)
T 3mog_A          243 FAVTCSVFNAFWQERRFLPSLVQQELVIGGRLGKKSGLGVYDWRAEREAVVGLEAVSDSFSPMKVEKKSDGVTEIDDVLL  322 (483)
T ss_dssp             HHHHHHHHHHTTSCGGGCCCHHHHHHHHTTCCBGGGTBSSSBTTSCCCCCCCCCCCCGGGCCSCEEECSTTEEEETTEEE
T ss_pred             HHHHHHHHHHhcCCCccCchHHHHHHHHCCCCceeCCCEeEECCCCCCCcccccCCCchhHHHHHHHHhcccccccchhh
Confidence            99999998876 44444 789999999999999999999999976321111     11110000000             


Q ss_pred             --------------hh----hccC--------------------------CCCCCCCccc--cHHHHHHHHHHHHHHHHH
Q 004891          604 --------------RR----LSNI--------------------------MPGGKVPISV--TEKEIVEMILFPVVNESC  637 (725)
Q Consensus       604 --------------~~----~~~~--------------------------~~~~~~~~~~--~~~~i~~r~~~~~~~ea~  637 (725)
                                    ..    ..++                          ...++....+  +..+|+||++++++|||+
T Consensus       323 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~vev~~~~~t~~~~~~~~~~~~~~~gk~~~~~~d~~g~i~~Rll~~~~nEA~  402 (483)
T 3mog_A          323 IETQGETAQALAIRLARPVVVIDKMAGKVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQIADYPGMLIWRTVAMIINEAL  402 (483)
T ss_dssp             EECSSSCHHHHHHHHTSCEEEEECCSSSEEEEEECTTSCHHHHHHHHHHHHTTTCEEEECCCCTTTTHHHHHHHHHHHHH
T ss_pred             cccCCcchHHHhhccccceeeeeccccceEEEecCCCCCHHHHHHHHHHHHHcCCceeeecccccHHHHHHHHHHHHHHH
Confidence                          00    0000                          0001111011  234699999999999999


Q ss_pred             HHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHcCCCCCCC
Q 004891          638 RVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPSRFLEERATKGIPLSAP  714 (725)
Q Consensus       638 ~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~~l~~~~~~g~gf~~~  714 (725)
                      +|+++||+ |++|||.+|++|+|||+   |||+|+|.+|+|.+++.++.|++.+|+ +|+|+++|++|++.|+.||.-
T Consensus       403 ~~l~eGva-s~~diD~a~~~G~G~P~---GPl~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~lL~~~v~~G~~~~~~  476 (483)
T 3mog_A          403 DALQKGVA-SEQDIDTAMRLGVNYPY---GPLAWGAQLGWQRILRLLENLQHHYGEERYRPCSLLRQRALLESGYESE  476 (483)
T ss_dssp             HHHHTTSS-CHHHHHHHHHHHSCCSS---CHHHHHHHHCHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHTCC---
T ss_pred             HHHHcCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHcCCCCCCC
Confidence            99999998 99999999999999999   999999999999999999999999986 999999999999999999986

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=100.00  E-value=1.5e-53  Score=438.70  Aligned_cols=250  Identities=28%  Similarity=0.373  Sum_probs=229.1

Q ss_pred             EEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccch
Q 004891            6 VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD   84 (725)
Q Consensus         6 i~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   84 (725)
                      |.+|+ +|||++|||||| +.|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++......  ......
T Consensus         2 vl~E~-~dgVa~itlnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~--~~~~~~   78 (254)
T 3hrx_A            2 VLKER-QDGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGDRKPD--YEAHLR   78 (254)
T ss_dssp             EEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGTTTSCCC--HHHHTH
T ss_pred             eEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCcccCccHHHhcccchh--hHHHHH
Confidence            56788 789999999999 68999999999999999999999999999999999999999999998653221  222334


Q ss_pred             hHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHH
Q 004891           85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML  164 (725)
Q Consensus        85 ~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l  164 (725)
                      ..+.++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++|++
T Consensus        79 ~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~lll  157 (254)
T 3hrx_A           79 RYNRVV-EALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLL  157 (254)
T ss_dssp             HHHHHH-HHHHTCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHH-HHHHhCCCCEEEEECCEeeehhhhhhhccceeeEcCCCEEEchhhCcCcCCcccHHHHHHHHhCcchHHHHhh
Confidence            455666 6799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhH
Q 004891          165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH  244 (725)
Q Consensus       165 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  244 (725)
                      ||++++|+||+++||||+|||++++.+++.++++++++.++.++                                    
T Consensus       158 tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~------------------------------------  201 (254)
T 3hrx_A          158 LSPRLSAEEALALGLVHRVVPAEKLMEEALSLAKELAQGPTRAY------------------------------------  201 (254)
T ss_dssp             HCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHH------------------------------------
T ss_pred             cCcccCHHHHHHCCCeEEecCcHHHHHHHHHHHHHhhccchHHH------------------------------------
Confidence            99999999999999999999999999999999999999887533                                    


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCC
Q 004891          245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (725)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  295 (725)
                      ..+|++++.....+++++++.|...+..++.|+|++|++++|++||+|+.+
T Consensus       202 ~~~K~~~~~~~~~~~~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~f~  252 (254)
T 3hrx_A          202 ALTKKLLLETYRLSLTEALALEAVLQGQAGQTQDHEEGVRAFREKRPPRFQ  252 (254)
T ss_dssp             HHHHHHHHHGGGSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCC
Confidence            256788999999999999999999999999999999999999999998753

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=2.9e-53  Score=440.07  Aligned_cols=254  Identities=25%  Similarity=0.326  Sum_probs=224.4

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc---c
Q 004891            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD---V   79 (725)
Q Consensus         4 ~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~---~   79 (725)
                      ++|.+++ ++||++||||||+ .|+||.+|+++|.+++++++.|++||+|||||.|++||+|+|++++........   .
T Consensus        15 e~il~~~-~~gVa~itlnRP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~   93 (274)
T 4fzw_C           15 EFILSHV-EKGVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDLNDRNVDPTGPAPDLG   93 (274)
T ss_dssp             -CEEEEE-ETTEEEEEECCTTTTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCCC---------CCCHH
T ss_pred             ccEEEEE-ECCEEEEEEcCcCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcChHhhhccccccchHHH
Confidence            5688999 8999999999995 799999999999999999999999999999999999999999998764322211   1


Q ss_pred             cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (725)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  159 (725)
                      ..+......++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus        94 ~~~~~~~~~l~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A  172 (274)
T 4fzw_C           94 MSVERFYNPLV-RRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPDCGGTWLLPRVAGRARA  172 (274)
T ss_dssp             HHHHHTHHHHH-HHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCGGGTTCCCTTTHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHH-HHHHHCCCCEEEEECCceeecCceeeeccceEEECCCCEEECcccCcccCCCccHHHHHHHHhhHHHH
Confidence            12223344555 67999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (725)
Q Consensus       160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (725)
                      ++|++||++++|+||+++||||+|||++++.+++.++|+++++.|+.++                               
T Consensus       173 ~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~-------------------------------  221 (274)
T 4fzw_C          173 MGLALLGNQLSAEQAHEWGMIWQVVDDETLADTAQQLARHLATQPTFGL-------------------------------  221 (274)
T ss_dssp             HHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHTTSCHHHH-------------------------------
T ss_pred             HHHHHhCCcCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHHcCCHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999887533                               


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCC
Q 004891          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (725)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  295 (725)
                           ..+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|+.+
T Consensus       222 -----~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Egv~AF~eKR~P~f~  272 (274)
T 4fzw_C          222 -----GLIKQAINSAETNTLDTQLDLERDYQRLAGRSADYREGVSAFLAKRSPQFT  272 (274)
T ss_dssp             -----HHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHC-CCCCCC
T ss_pred             -----HHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCC
Confidence                 356888999999999999999999999999999999999999999998853

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=4.9e-53  Score=434.76  Aligned_cols=250  Identities=30%  Similarity=0.453  Sum_probs=228.6

Q ss_pred             cEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccc
Q 004891            5 RVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMP   83 (725)
Q Consensus         5 ~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~   83 (725)
                      .|.+++ +++|++||||||+ .|+||.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++.......   .+.
T Consensus         6 ~l~ve~-~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~---~~~   81 (258)
T 4fzw_A            6 ELIVSR-QQRVLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAEKDLAA---TLN   81 (258)
T ss_dssp             EEEEEE-ETTEEEEEEECGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEEECBCHHHHHTCCHHH---HHT
T ss_pred             cEEEEE-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCceeCCCchhhhccchhhh---HHH
Confidence            588998 7999999999995 79999999999999999999999999999999999999999999986532111   112


Q ss_pred             hhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHH
Q 004891           84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM  163 (725)
Q Consensus        84 ~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~  163 (725)
                      .....++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|+
T Consensus        82 ~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~ll  160 (258)
T 4fzw_A           82 DTRPQLW-ARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASKMV  160 (258)
T ss_dssp             CSHHHHH-HHHHTCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHH
T ss_pred             hHHHHHH-HHHHHCCCCEEEEEcCcceeeeeEeecccceEEECCCCEEECcccCCCcCCCchHHHHHHHHhCHHHHHHHH
Confidence            2334556 669999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChh
Q 004891          164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ  243 (725)
Q Consensus       164 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  243 (725)
                      +||++++|+||+++||||+|||++++.+++.++++++++.+|.+++                                  
T Consensus       161 ltg~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~----------------------------------  206 (258)
T 4fzw_A          161 LSGESITAQQAQQAGLVSDVFPSDLTLEYALQLASKMARHSPLALQ----------------------------------  206 (258)
T ss_dssp             HHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHH----------------------------------
T ss_pred             HcCCcCcHHHHHHCCCeeEEeCchHHHHHHHHHHHHHHhCCHHHHH----------------------------------
Confidence            9999999999999999999999999999999999999999875433                                  


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCC
Q 004891          244 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (725)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  295 (725)
                        .+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|..+
T Consensus       207 --~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~f~  256 (258)
T 4fzw_A          207 --AAKQALRQSQEVALQAGLAQERQLFTLLAATEDRHEGISAFLQKRTPDFK  256 (258)
T ss_dssp             --HHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred             --HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCC
Confidence              56888999999999999999999999999999999999999999998753

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=100.00  E-value=2.2e-52  Score=438.28  Aligned_cols=268  Identities=22%  Similarity=0.339  Sum_probs=238.0

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHH-HHHHhhcCcccccCc-cc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD-KANNALKMLKGVLDY-SE  384 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~-~~~~~~~~i~~~~~~-~~  384 (725)
                      .++||+|||+|+||++||..++++|++|++||++++.++++.+++++.++++.++|.++.. ..+..+++++.++++ ++
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a   84 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEA   84 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHH
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhH
Confidence            4689999999999999999999999999999999999999999999999999999988643 456677899999998 57


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCC
Q 004891          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT  464 (725)
Q Consensus       385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t  464 (725)
                      +++||+|||||||++++|+++|++|++++++++||+||||+++++++++.+.+|+||+|+|||||++.+|+|||++|+.|
T Consensus        85 ~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~ia~~~~~p~r~ig~HffNP~~~m~LVEiv~g~~T  164 (319)
T 3ado_A           85 VEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGLAHVKQCIVAHPVNPPYYIPLVELVPHPET  164 (319)
T ss_dssp             TTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHHHTTCTTGGGEEEEEECSSTTTCCEEEEEECTTC
T ss_pred             hccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchhhhhhccCCCcEEEecCCCCccccchHHhcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCeeEEE-cCCcchhhhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCC---ccHHHHHHhh
Q 004891          465 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLP---IGPFQLLDLA  538 (725)
Q Consensus       465 ~~e~~~~~~~l~~~lGk~~v~v-~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv-~~~dID~~~-~~~G~p---~Gpf~~~D~~  538 (725)
                      ++++++++..+++.+|++||++ +|+||||+||++.++++||++++++|+ +++|||.++ .++|+|   ||||+++|++
T Consensus       165 s~~~~~~~~~~~~~~gk~pv~v~kd~pGFi~NRl~~~~~~EA~~lv~eGvas~edID~~~~~g~g~~~a~mGPf~~~Dl~  244 (319)
T 3ado_A          165 SPATVDRTHALMRKIGQSPVRVLKEIDGFVLNRLQYAIISEAWRLVEEGIVSPSDLDLVMSDGLGMRYAFIGPLETMHLN  244 (319)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEECSSCCTTTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHTTHHHHHTTSCHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHhCCccCCcCCCCCCEeHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCCcchhhhhhhc
Confidence            9999999999999999999866 899999999999999999999999997 999999999 888887   8999999999


Q ss_pred             chHHHHHHHHHHHhhCCCCCCCcHHHHH-HHHcCCCccccCceeeecc
Q 004891          539 GYGVAAATSKEFDKAFPDRSFQSPLVDL-LLKSGRNGKANGKGLYTYE  585 (725)
Q Consensus       539 Gld~~~~~~~~l~~~~~~~~~~~~~l~~-~v~~g~~G~k~g~Gfy~y~  585 (725)
                      |+|+...+.+ +.+          .++. +-+.|+.+.++|+++|+|.
T Consensus       245 G~~~~~~~~~-~~~----------~~~~~~~~~~~~p~~~~~~~~k~~  281 (319)
T 3ado_A          245 AEGMLSYCDR-YSE----------GMKRVLKSFGSIPEFSGATVEKVN  281 (319)
T ss_dssp             TTSHHHHHHH-HHH----------HHHHHHHTCCCCCCCCHHHHHHHH
T ss_pred             CccHHHHHHH-hhH----------hHHHHHHHcCcccccchHHHHHHH
Confidence            9987654322 211          1222 2333566666666666553

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=100.00  E-value=2.5e-52  Score=434.72  Aligned_cols=257  Identities=32%  Similarity=0.426  Sum_probs=238.7

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      -+||+|||+|+||++||.+++ +|++|++||++++.++++.+.       +          .+..+++++.+++++.+++
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~-------l----------~~~~~~~i~~~~~~~~~~~   73 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQ-------I----------PEELLSKIEFTTTLEKVKD   73 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHH-------S----------CGGGGGGEEEESSCTTGGG
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHH-------H----------HHHHhCCeEEeCCHHHHcC
Confidence            479999999999999999999 999999999999998887643       0          1334567877888877999


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCCHH
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQ  467 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e  467 (725)
                      ||+||||+||+.++|+.+|+++...  +++|++||||+++++++++.+.++.+++|+|||+|++.++++|+++++.|+++
T Consensus        74 aDlVieavpe~~~vk~~l~~~l~~~--~~~IlasntSti~~~~~a~~~~~~~r~~G~Hf~~Pv~~~~lveiv~g~~t~~~  151 (293)
T 1zej_A           74 CDIVMEAVFEDLNTKVEVLREVERL--TNAPLCSNTSVISVDDIAERLDSPSRFLGVHWMNPPHVMPLVEIVISRFTDSK  151 (293)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHTT--CCSCEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEEECTTCCHH
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHhcC--CCCEEEEECCCcCHHHHHHHhhcccceEeEEecCccccCCEEEEECCCCCCHH
Confidence            9999999999999999999999876  99999999999999999998888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcCCCHHHHHHHH-HhcCCCc---cHHHHHHhhchHHH
Q 004891          468 VILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPI---GPFQLLDLAGYGVA  543 (725)
Q Consensus       468 ~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv~~~dID~~~-~~~G~p~---Gpf~~~D~~Gld~~  543 (725)
                      ++++++++++.+|++|+++++.  |++||++.++++||+.++++|+++++||.++ .++|+|+   |||+++|.+|+|++
T Consensus       152 ~~~~~~~l~~~lGk~~v~v~d~--fi~Nrll~~~~~EA~~l~~~Gv~~e~id~~~~~g~g~~~~~~GP~~l~D~~Gld~~  229 (293)
T 1zej_A          152 TVAFVEGFLRELGKEVVVCKGQ--SLVNRFNAAVLSEASRMIEEGVRAEDVDRVWKHHLGLLYTLFGPLGNLDYIGLDVA  229 (293)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESS--CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHcCCeEEEeccc--ccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCCHHHHHHHhchHHH
Confidence            9999999999999999999986  9999999999999999999999999999999 7999999   99999999999999


Q ss_pred             HHHHHHHHhhCCCCC-CCcHHHHHHHHcCCCccccCceeeeccC
Q 004891          544 AATSKEFDKAFPDRS-FQSPLVDLLLKSGRNGKANGKGLYTYEK  586 (725)
Q Consensus       544 ~~~~~~l~~~~~~~~-~~~~~l~~~v~~g~~G~k~g~Gfy~y~~  586 (725)
                      +++++.+++.+++.. .|++++++|+++|++|+|||+|||+|++
T Consensus       230 ~~~~~~l~~~~~~~~~~~~~~l~~~v~~G~lG~Ktg~Gfy~y~~  273 (293)
T 1zej_A          230 YYASLYLYKRFGDEKFKPPEWLQEKIKKGEVGVKAGKGIYEYGP  273 (293)
T ss_dssp             HHHHHHHHHHHCCGGGSCCHHHHHHHHTTCCBGGGTBSSSBCCT
T ss_pred             HHHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeecCc
Confidence            999999999988744 4889999999999999999999999954

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=100.00  E-value=7.3e-52  Score=428.06  Aligned_cols=256  Identities=27%  Similarity=0.462  Sum_probs=231.8

Q ss_pred             CCCCcEEEE-EecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCC
Q 004891            1 MAAPRVTME-VGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAG   77 (725)
Q Consensus         1 M~~~~i~~~-~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~   77 (725)
                      |++++|.++ . +++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.| ++||+|+|++++.... ..
T Consensus         5 m~~~~v~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~-~~   82 (265)
T 3kqf_A            5 LQLQNISVDYA-TPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMN-EE   82 (265)
T ss_dssp             --CCSEEEECC-STTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTCC-HH
T ss_pred             ccCCeEEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChHHHhccC-HH
Confidence            678899999 7 8999999999995 7999999999999999999999999999999999 8999999999987532 11


Q ss_pred             cccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHH
Q 004891           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (725)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~  157 (725)
                      ....+....+.++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus        83 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~  161 (265)
T 3kqf_A           83 QVRHAVSMIRTTM-EMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVG  161 (265)
T ss_dssp             HHHHHHHHHHHHH-HHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCcEEECcccccCcCCCccHHHHHHHHhCHH
Confidence            1222333445566 679999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 004891          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (725)
Q Consensus       158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (725)
                      +|++|+++|++++|+||+++||||+|||++++.+++.++|+++++.+|.++                             
T Consensus       162 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~-----------------------------  212 (265)
T 3kqf_A          162 RAKELIYTGRRISAQEAKEYGLVEFVVPVHLLEEKAIEIAEKIASNGPIAV-----------------------------  212 (265)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHH-----------------------------
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHcCCHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999999887533                             


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCC
Q 004891          238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (725)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  295 (725)
                             ..+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|...
T Consensus       213 -------~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  263 (265)
T 3kqf_A          213 -------RLAKEAISNGIQVDLHTGLQMEKQAYEGVIHTKDRLEGLQAFKEKRTPMYK  263 (265)
T ss_dssp             -------HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTTSCCCCC
T ss_pred             -------HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence                   367889999999999999999999999999999999999999999988753

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=100.00  E-value=7.6e-52  Score=426.98  Aligned_cols=255  Identities=37%  Similarity=0.616  Sum_probs=230.1

Q ss_pred             CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccccc
Q 004891            3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (725)
Q Consensus         3 ~~~i~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (725)
                      +++|.++. +++|++||||||+.|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++...........+
T Consensus         5 ~~~v~~~~-~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   83 (261)
T 3pea_A            5 LKFLSVRV-EDHIAVATLNHAPANAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSVTEAKQATEL   83 (261)
T ss_dssp             CSSEEEEE-ETTEEEEEECCTTTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSSTTCCHHHHHHH
T ss_pred             ccceEEEE-ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcCHHHHhhcCchhHHHHH
Confidence            36799999 89999999999966999999999999999999999999999999999999999999998654221112222


Q ss_pred             chhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHH
Q 004891           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM  162 (725)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l  162 (725)
                      ....+.++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++|
T Consensus        84 ~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l  162 (261)
T 3pea_A           84 AQLGQVTF-ERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLGLPELTLGLIPGFAGTQRLPRYVGKAKACEM  162 (261)
T ss_dssp             HHHHHHHH-HHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHH
Confidence            23334455 67999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCCh
Q 004891          163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  242 (725)
Q Consensus       163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (725)
                      ++||++++|+||+++||||+|||++++.+++.++|+++++.|+.++                                  
T Consensus       163 ~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~----------------------------------  208 (261)
T 3pea_A          163 MLTSTPITGAEALKWGLVNGVFAEETFLDDTLKVAKQIAGKSPATA----------------------------------  208 (261)
T ss_dssp             HHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHH----------------------------------
T ss_pred             HHcCCCCCHHHHHHCCCccEecCHHHHHHHHHHHHHHHHcCCHHHH----------------------------------
Confidence            9999999999999999999999999999999999999999887533                                  


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCC
Q 004891          243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (725)
Q Consensus       243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  295 (725)
                        ..+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|...
T Consensus       209 --~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~P~f~  259 (261)
T 3pea_A          209 --RAVLELLQTTKSSHYYEGVQREAQIFGEVFTSEDGREGVAAFLEKRKPSFS  259 (261)
T ss_dssp             --HHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTSCCCCC
T ss_pred             --HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence              356888888888889999999999999999999999999999999998753

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=100.00  E-value=1.2e-51  Score=426.50  Aligned_cols=257  Identities=21%  Similarity=0.308  Sum_probs=229.9

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc-
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-   78 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~-   78 (725)
                      |+++.|.++. +++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++........ 
T Consensus         1 M~~~~v~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   79 (268)
T 3i47_A            1 MSLSDLLYEI-QDKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANFTEE   79 (268)
T ss_dssp             -CCCSEEEEE-ETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECSSCSBCSBCHHHHHHHHTCCHH
T ss_pred             CCCCEEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCeeCCCChhhhhccccccHH
Confidence            8999999999 8999999999995 799999999999999999999999999999999999999999999875322111 


Q ss_pred             -ccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHH
Q 004891           79 -VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (725)
Q Consensus        79 -~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~  157 (725)
                       ..........++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ +|++++|..
T Consensus        80 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~  157 (268)
T 3i47_A           80 ENLEDSLVLGNLM-YSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIPAVISP-YVVRAIGER  157 (268)
T ss_dssp             HHHHHHHHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCTTTHH-HHHHHHCHH
T ss_pred             HHHHHHHHHHHHH-HHHHhCCCCEEEEECCEEEhHhHHHHHhCCEEEEcCCCEEECcccccCCCcccHHH-HHHHHhCHH
Confidence             111122344556 67999999999999999999999999999999999999999999999999999887 899999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 004891          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (725)
Q Consensus       158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (725)
                      +|++|++||++++|+||+++||||+|||++++.+++.++|++|++.||.++                             
T Consensus       158 ~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~-----------------------------  208 (268)
T 3i47_A          158 AAKMLFMSAEVFDATRAYSLNLVQHCVPDDTLLEFTLKYASQISNNAPEAV-----------------------------  208 (268)
T ss_dssp             HHHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHH-----------------------------
T ss_pred             HHHHHHHcCCccCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHcCCHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999999887543                             


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCCC
Q 004891          238 APNMPQHQACLDVIEEGIVHGGYS-GVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (725)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~-~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  296 (725)
                             ..+|++++.....++++ .++.|.+.+..++.|+|++|++++|++||+|....
T Consensus       209 -------~~~K~~l~~~~~~~l~~~~~~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~f~~  261 (268)
T 3i47_A          209 -------KNSKQLAQYVANKKIDEELVRYTASLIAHKRVSDEGQEGLKAFLNKEIPNWNE  261 (268)
T ss_dssp             -------HHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHSHHHHHHHHHHHHTCCCTTC-
T ss_pred             -------HHHHHHHHhhhcCChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCC
Confidence                   35678888888888888 78999999999999999999999999999998654

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=100.00  E-value=9.1e-52  Score=433.37  Aligned_cols=275  Identities=28%  Similarity=0.409  Sum_probs=255.9

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcC-CCCHHHHHHhhcCcccccCc-cc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRG-KLTQDKANNALKMLKGVLDY-SE  384 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g-~~~~~~~~~~~~~i~~~~~~-~~  384 (725)
                      .++||+|||+|.||++||..++++|++|++||++++.++++.+.+.+.+.+.++++ .++.++.+....++..++++ +.
T Consensus         3 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~   82 (283)
T 4e12_A            3 GITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQA   82 (283)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHH
Confidence            57899999999999999999999999999999999999999999999999888888 77777777777888888888 46


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCC
Q 004891          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT  464 (725)
Q Consensus       385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t  464 (725)
                      +++||+||+|+|++.++++.+++++.+.+++++|++||||+++++++++.+.++.+++|+|||+|++.++++|+++++.|
T Consensus        83 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la~~~~~~~~~ig~h~~~p~~~~~lvevv~~~~t  162 (283)
T 4e12_A           83 VKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVGYTGRGDKFLALHFANHVWVNNTAEVMGTTKT  162 (283)
T ss_dssp             TTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHHHHSCGGGEEEEEECSSTTTSCEEEEEECTTS
T ss_pred             hccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEccCCCcccCceEEEEeCCCC
Confidence            89999999999999999999999999999999999999999999999988888999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCeeEEE-cCCcchhhhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchH
Q 004891          465 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYG  541 (725)
Q Consensus       465 ~~e~~~~~~~l~~~lGk~~v~v-~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv-~~~dID~~~-~~~G~p~Gpf~~~D~~Gld  541 (725)
                      ++++++.++++++.+|+.++++ ++.|||++||++.++++|++.++++|. +|++||.++ .++|+|+|||+++|++|||
T Consensus       163 ~~~~~~~~~~l~~~~g~~~v~v~~~~~g~i~nr~~~~~~~ea~~l~~~g~~~~~~id~~~~~~~g~~~Gp~~~~D~~Gld  242 (283)
T 4e12_A          163 DPEVYQQVVEFASAIGMVPIELKKEKAGYVLNSLLVPLLDAAAELLVDGIADPETIDKTWRIGTGAPKGPFEIFDIVGLT  242 (283)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEECSSCCTTTTHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHCCSSCHHHHHHHHCHH
T ss_pred             CHHHHHHHHHHHHHcCCEEEEEecCCCCEEehHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCcCHHHHHHhccHH
Confidence            9999999999999999999999 799999999999999999999999985 999999999 7999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCCC-CcHHHHHHHHcCCCccccCceeeec
Q 004891          542 VAAATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKANGKGLYTY  584 (725)
Q Consensus       542 ~~~~~~~~l~~~~~~~~~-~~~~l~~~v~~g~~G~k~g~Gfy~y  584 (725)
                      +.++++++   ..++..+ |++++++|+++|++|+|||+|||+|
T Consensus       243 ~~~~~~~~---~~~~~~~~~~~~~~~~v~~g~lG~k~g~Gfy~y  283 (283)
T 4e12_A          243 TAYNISSV---SGPKQREFAAYLKENYIDKGKLGLATGEGFYRY  283 (283)
T ss_dssp             HHHHHHHT---SCHHHHHHHHHHHHHTGGGTCCBGGGTBSSSBC
T ss_pred             HHHHHHhc---cccCcccCchHHHHHHHHCCCCceeCCeEeecC
Confidence            99999883   2222223 7789999999999999999999998

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}

Probab=100.00  E-value=6.4e-52  Score=429.41  Aligned_cols=255  Identities=24%  Similarity=0.384  Sum_probs=229.5

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (725)
                      |+++.|.++. +++|++||||||+ .|+||.+|+++|.++++++  |+++|+|||||.|++||+|+|++++..... ...
T Consensus        13 m~~~~v~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~--d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~~   88 (275)
T 3hin_A           13 ADPSTLVVDT-VGPVLTIGLNRPKKRNALNDGLMAALKDCLTDI--PDQIRAVVIHGIGDHFSAGLDLSELRERDA-TEG   88 (275)
T ss_dssp             CCGGGEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHTSSC--CTTCCEEEEEESSSCSBCCBCGGGCCCCCH-HHH
T ss_pred             CCCCeEEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHh--CcCceEEEEECCCCCccCCCCHHHHhccCh-hhH
Confidence            6678899999 7999999999995 8999999999999999998  579999999999999999999999865211 111


Q ss_pred             cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (725)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  159 (725)
                      .........++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus        89 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A  167 (275)
T 3hin_A           89 LVHSQTWHRVF-DKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVGGGGSVRLPRLIGVARM  167 (275)
T ss_dssp             HHHHHHHHHHH-HHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHHH
Confidence            12223345566 67999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (725)
Q Consensus       160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (725)
                      ++|+++|++++|+||+++||||+|||++++.+++.++|+++++.+|.++                               
T Consensus       168 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~p~a~-------------------------------  216 (275)
T 3hin_A          168 ADMMLTGRVYSAAEGVVHGFSQYLIENGSAYDKALELGNRVAQNAPLTN-------------------------------  216 (275)
T ss_dssp             HHHHHHCCCEEHHHHHHHTSCSEEESSSCHHHHHHHHHHHHTTSCHHHH-------------------------------
T ss_pred             HHHHHcCCCCCHHHHHHCCCCCEEeChhHHHHHHHHHHHHHHhCCHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999887533                               


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCCC
Q 004891          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (725)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  296 (725)
                           ..+|++++.....+++++++.|...+..++.|+|++|++++|++||+|....
T Consensus       217 -----~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~f~~  268 (275)
T 3hin_A          217 -----FAVLQALPMIAEANPQTGLLMESLMATVAQSDQEAKTRIRAFLDHKTAKVRE  268 (275)
T ss_dssp             -----HHHHTHHHHHHHSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHC--
T ss_pred             -----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCC
Confidence                 3567888888889999999999999999999999999999999999998654

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=100.00  E-value=1.6e-51  Score=424.80  Aligned_cols=254  Identities=32%  Similarity=0.446  Sum_probs=231.0

Q ss_pred             CCCCcEEEEEecCc-EEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc
Q 004891            1 MAAPRVTMEVGNDG-VAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (725)
Q Consensus         1 M~~~~i~~~~~~~~-v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~   78 (725)
                      |+++.|.++. +++ |++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++....... 
T Consensus         6 m~~~~i~~~~-~~~gv~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-   83 (263)
T 3moy_A            6 TTYTTIATSR-PVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADIAEMVTLTPHQ-   83 (263)
T ss_dssp             CCCSSEEEEC-CSTTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEEESBCHHHHTTCCHHH-
T ss_pred             CCCCeEEEEE-eCCeEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeeCCcChHHHhccCchh-
Confidence            7788999999 565 9999999996 69999999999999999999999999999999999999999999986532111 


Q ss_pred             ccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHH
Q 004891           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (725)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~  158 (725)
                        ........++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+
T Consensus        84 --~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~  160 (263)
T 3moy_A           84 --ARERNLLSGW-DSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKAK  160 (263)
T ss_dssp             --HHHTTTTHHH-HHHTTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCSSSTTTHHHHHHCHHH
T ss_pred             --HHHHHHHHHH-HHHHhCCCCEEEEECCEeehHHHHHHHHCCEEEecCCCEEeCcccccCCCCchhHHHHHHHHhCHHH
Confidence              1122233455 6699999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 004891          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (725)
Q Consensus       159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (725)
                      |++|++||++++|+||+++||||+|||++++.+++.++|++++..++.++                              
T Consensus       161 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~------------------------------  210 (263)
T 3moy_A          161 AMDLCLTGRSLTAEEAERVGLVSRIVPAADLLDEALAVAQRIARMSRPAG------------------------------  210 (263)
T ss_dssp             HHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHHSCHHHH------------------------------
T ss_pred             HHHHHHcCCCCCHHHHHHCCCccEecCchHHHHHHHHHHHHHHhCCHHHH------------------------------
Confidence            99999999999999999999999999999999999999999999887533                              


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCC
Q 004891          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (725)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  295 (725)
                            ..+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|...
T Consensus       211 ------~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~f~  261 (263)
T 3moy_A          211 ------RAVKDAINEAFERPLSAGMRYERDAFYAMFDTHDQTEGMTAFLEKRTPEFT  261 (263)
T ss_dssp             ------HHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCC
T ss_pred             ------HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCC
Confidence                  367889999999999999999999999999999999999999999988753

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=100.00  E-value=2.2e-51  Score=426.09  Aligned_cols=254  Identities=30%  Similarity=0.487  Sum_probs=229.2

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (725)
                      |+++.|.++. +++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.......  
T Consensus        22 m~~~~v~~~~-~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~--   98 (278)
T 3h81_A           22 MTYETILVER-DQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLTFAD--   98 (278)
T ss_dssp             -CCSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCBCSHHHHTCCHHH--
T ss_pred             CCCCeEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCeecCcCHHHHhccChhh--
Confidence            7788899999 7899999999995 79999999999999999999999999999999999999999999987532111  


Q ss_pred             cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (725)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  159 (725)
                      ......... + ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus        99 ~~~~~~~~~-~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A  176 (278)
T 3h81_A           99 AFTADFFAT-W-GKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKA  176 (278)
T ss_dssp             HHHHTTTGG-G-HHHHTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHH-H-HHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEcCCCEEECchhhcCcCCCccHHHHHHHHhCHHHH
Confidence            001111112 4 56899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (725)
Q Consensus       160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (725)
                      ++|++||++++|+||+++||||+|||++++.+++.++|++|++.++.++                               
T Consensus       177 ~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~-------------------------------  225 (278)
T 3h81_A          177 MDLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMSASAA-------------------------------  225 (278)
T ss_dssp             HHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHH-------------------------------
T ss_pred             HHHHHhCCCcCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHhCCHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999887533                               


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCC
Q 004891          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (725)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  295 (725)
                           ..+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|...
T Consensus       226 -----~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~P~f~  276 (278)
T 3h81_A          226 -----RMAKEAVNRAFESSLSEGLLYERRLFHSAFATEDQSEGMAAFIEKRAPQFT  276 (278)
T ss_dssp             -----HHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCC
T ss_pred             -----HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence                 367889999999999999999999999999999999999999999988753

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=100.00  E-value=1.7e-50  Score=428.23  Aligned_cols=283  Identities=33%  Similarity=0.526  Sum_probs=261.0

Q ss_pred             CCCCCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHH-----HHHHhhcCcc
Q 004891          303 LKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD-----KANNALKMLK  377 (725)
Q Consensus       303 ~~~~~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~-----~~~~~~~~i~  377 (725)
                      .|..+|+||+|||+|.||.+||..|+++|++|++||+++++++++.+.+.+.++.++++|.++..     +......+++
T Consensus        10 ~~~~~~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~   89 (302)
T 1f0y_A           10 AKKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA   89 (302)
T ss_dssp             --CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEE
T ss_pred             cccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceE
Confidence            35567889999999999999999999999999999999999999988888888888888887654     4444556788


Q ss_pred             cccCcc-cccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCee
Q 004891          378 GVLDYS-EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLL  456 (725)
Q Consensus       378 ~~~~~~-~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lv  456 (725)
                      .+++++ .+++||+||+|||++.++++.+++++.+.+++++||+|++|+++++++++.+.++++++++||++|+..++++
T Consensus        90 ~~~~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~l~~~~~~~~~~~g~h~~~P~~~~~~~  169 (302)
T 1f0y_A           90 TSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLV  169 (302)
T ss_dssp             EESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEE
T ss_pred             EecCHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCCcccEEEEecCCCcccCceE
Confidence            788885 7899999999999999999999999999999999999999999999999888888999999999999999999


Q ss_pred             eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCCccHHHH
Q 004891          457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLPIGPFQL  534 (725)
Q Consensus       457 eii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~G-v~~~dID~~~-~~~G~p~Gpf~~  534 (725)
                      |+++++.+++++++.+.++++.+|+.++++++.+||++||++.++++|+++++++| +++++||.++ .++|||+|||++
T Consensus       170 ~i~~g~~~~~e~~~~~~~l~~~~G~~~v~~~~~~g~i~nr~l~~~~~Ea~~l~~~g~~~~~~id~~~~~g~g~p~GP~~~  249 (302)
T 1f0y_A          170 EVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFEL  249 (302)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHHTTCEEEEECSCTTTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCSSCHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHcCCceEEecCcccccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999997 5999999999 899999999999


Q ss_pred             HHhhchHHHHHHHHHHHhhC-CCC-CCCcHHHHHHHHcCCCccccCceeeecc
Q 004891          535 LDLAGYGVAAATSKEFDKAF-PDR-SFQSPLVDLLLKSGRNGKANGKGLYTYE  585 (725)
Q Consensus       535 ~D~~Gld~~~~~~~~l~~~~-~~~-~~~~~~l~~~v~~g~~G~k~g~Gfy~y~  585 (725)
                      +|.+|+|+++++++.+++.+ +++ +.|++++++|+++|++|+|||+|||+|+
T Consensus       250 ~D~~Gld~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~  302 (302)
T 1f0y_A          250 LDYVGLDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK  302 (302)
T ss_dssp             HHHHCHHHHHHHHHHHHHTTTTCGGGCCCHHHHHHHHTTCCBTTTTBSSSBCC
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCCccCcCHHHHHHHHcCCCccccCcEeeeCC
Confidence            99999999999999999988 775 4488999999999999999999999994

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=100.00  E-value=9.3e-51  Score=419.72  Aligned_cols=253  Identities=22%  Similarity=0.345  Sum_probs=218.9

Q ss_pred             CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhh---hccC
Q 004891            1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ---KVHG   75 (725)
Q Consensus         1 M~-~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~---~~~~   75 (725)
                      || ++.|.++. +++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.   ....
T Consensus         1 Ms~~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~   79 (266)
T 3fdu_A            1 MSLHPHLNANL-EGGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFMGFVQNPN   79 (266)
T ss_dssp             -CCCTTEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHHHHHHSCC
T ss_pred             CCCCCeEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeECCcCHHHHhhhccccc
Confidence            65 67899999 8999999999995 89999999999999999999999999999999999999999999987   3322


Q ss_pred             CCcccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhC
Q 004891           76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG  155 (725)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG  155 (725)
                      ..  .........++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus        80 ~~--~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG  156 (266)
T 3fdu_A           80 AG--PAGQVPPFVLL-KSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAG  156 (266)
T ss_dssp             CS--CGGGSHHHHHH-HHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEECTTCEEECCTTTTTCCCCTTHHHHHHHHHC
T ss_pred             hh--hHHHHHHHHHH-HHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECchhhhCCCCcchHHHHHHHHhC
Confidence            11  12233455666 6799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHH
Q 004891          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK  235 (725)
Q Consensus       156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (725)
                      ..+|++|+++|++++|+||+++||||+|||  ++.+++.++|+++++.|+.+++                          
T Consensus       157 ~~~A~~l~ltg~~i~A~eA~~~GLv~~vv~--~l~~~a~~~a~~la~~~~~a~~--------------------------  208 (266)
T 3fdu_A          157 YHKAAELLFTAKKFNAETALQAGLVNEIVE--DAYATAQATAQHLTALPLASLK--------------------------  208 (266)
T ss_dssp             HHHHHHHHHHCCEECHHHHHHTTSCSEECS--CHHHHHHHHHHHHHTSCHHHHH--------------------------
T ss_pred             HHHHHHHHHhCCCcCHHHHHHCCCHHHHHH--HHHHHHHHHHHHHHhCCHHHHH--------------------------
Confidence            999999999999999999999999999998  8999999999999998875433                          


Q ss_pred             HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCCC
Q 004891          236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (725)
Q Consensus       236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  296 (725)
                                .+|++++... .+++++++.|.+.+..++.|+|++|++++|++||+|...+
T Consensus       209 ----------~~K~~l~~~~-~~l~~~l~~e~~~~~~~~~s~d~~eg~~aF~ekR~p~~~~  258 (266)
T 3fdu_A          209 ----------QTKALMKHDL-DQIIECIDHEAEIFMQRVQSPEMLEAVQAFMQKRQPDFSQ  258 (266)
T ss_dssp             ----------HHHHHHTTTH-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHC---------
T ss_pred             ----------HHHHHHHhhh-ccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCC
Confidence                      4566666654 4688999999999999999999999999999999998765

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=100.00  E-value=4e-51  Score=422.08  Aligned_cols=256  Identities=21%  Similarity=0.305  Sum_probs=224.4

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCC-cCCCCchhhhh--c-cC
Q 004891            1 MAAPRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF-SGGFDINVFQK--V-HG   75 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F-~aG~Dl~~~~~--~-~~   75 (725)
                      ||+++|.++. +++|++|||||| +.|+||.+|+++|.+++++++.|+++|+|||||.|++| |+|+|++++..  . ..
T Consensus         1 Ms~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FF~aG~Dl~~~~~~~~~~~   79 (263)
T 3lke_A            1 MSLSYVHTEI-QNDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQS   79 (263)
T ss_dssp             --CCSEEEEE-CSSEEEEEECCGGGTTBCCHHHHHHHHHHHHHHHHCSSCCEEEEEESCTTEEECBSCHHHHHHHHHCSS
T ss_pred             CCCcEEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCceEecCcCHHHHHhhcccCC
Confidence            8999999999 899999999999 68999999999999999999999999999999999999 99999999875  2 11


Q ss_pred             CCcccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhC
Q 004891           76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG  155 (725)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG  155 (725)
                      ......+.....+++ ++|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus        80 ~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vG  158 (263)
T 3lke_A           80 DVRLREVLHVLNHCV-LEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIG  158 (263)
T ss_dssp             SHHHHHHHHHHHHHH-HHHHTCSSEEEEEECSEEETHHHHGGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEcCCCEEeCchHhhCCCCCccHHHHHHHHhC
Confidence            111222333445566 6799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCCcceecC-cchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHH
Q 004891          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVT-SEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA  234 (725)
Q Consensus       156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~-~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (725)
                      ..+|++|+++|++++|+||+++||||+||| ++++.+++.++|+++++.|+.+++                         
T Consensus       159 ~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~~~a~~-------------------------  213 (263)
T 3lke_A          159 YEQTMNLLLEGKLFTSEEALRLGLIQEICENKQELQERVKNYLKAVSEGYVPAIA-------------------------  213 (263)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHTSCHHHHH-------------------------
T ss_pred             HHHHHHHHHhCCCcCHHHHHHcCCCcEecCChhHHHHHHHHHHHHHHhCCHHHHH-------------------------
Confidence            999999999999999999999999999999 999999999999999999875433                         


Q ss_pred             HHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          235 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       235 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                                 .+|++++.....+++++++.|.+.+..++.|+|+++++++|++++++.+
T Consensus       214 -----------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~~~~~~~  262 (263)
T 3lke_A          214 -----------ATKKLLKGKAAEELKQQLEQETEELVALFKQTEIKKRLEALVEGHHHHH  262 (263)
T ss_dssp             -----------HHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHC--------
T ss_pred             -----------HHHHHHHHhhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHhhhccCCCCC
Confidence                       5678888888888999999999999999999999999999999998764

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=4.4e-51  Score=422.52  Aligned_cols=256  Identities=24%  Similarity=0.336  Sum_probs=227.7

Q ss_pred             CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc
Q 004891            1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (725)
Q Consensus         1 M~-~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~   78 (725)
                      |+ ++.|.++. +++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|+.||+|+|++++....... 
T Consensus         5 m~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-   82 (265)
T 3swx_A            5 MSDYETLRIRR-DGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAAEIQGG-   82 (265)
T ss_dssp             --CCSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHC---
T ss_pred             CCCCceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcChHHHhhcccch-
Confidence            55 67899999 7999999999995 79999999999999999999999999999999999999999999987543221 


Q ss_pred             ccccchhHHHHHHHHH-hhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHH
Q 004891           79 VSLMPDVSVELVVNLI-EDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (725)
Q Consensus        79 ~~~~~~~~~~~~~~~l-~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~  157 (725)
                      ...+.....+.+ +.+ .++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus        83 ~~~~~~~~~~~~-~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~  161 (265)
T 3swx_A           83 ASLTPEGGINPW-QVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRGIYPFGGATIRFPRTAGWG  161 (265)
T ss_dssp             CCCCCTTCCCTT-CCSSCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTSCCCSSHHHHHHHHHCHH
T ss_pred             hHHHHHHHHHHH-HHHHHhCCCCEEEEEcCeeehHHHHHHHHCCEEEEcCCCEEECcccccccCCCccHHHHHHHHhhHH
Confidence            111112222334 457 899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 004891          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (725)
Q Consensus       158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (725)
                      +|++|+++|++++|+||+++||||+|||++++.+++.++|+++++.||.++                             
T Consensus       162 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~-----------------------------  212 (265)
T 3swx_A          162 NAMRWMLTADTFDAVEAHRIGIVQEIVPVGEHVDTAIAIAQTIARQAPLGV-----------------------------  212 (265)
T ss_dssp             HHHHHHTTCCCEEHHHHHHTTSCSEEESTTCHHHHHHHHHHHHHHSCHHHH-----------------------------
T ss_pred             HHHHHHHcCCcCCHHHHHHcCCCCEecChhHHHHHHHHHHHHHHcCCHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999999887533                             


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCC
Q 004891          238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (725)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  295 (725)
                             ..+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|+..
T Consensus       213 -------~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  263 (265)
T 3swx_A          213 -------QATLRNARLAVREGDAAAEEQLVPTVRELFTSEDATLGVQAFLSRTTAEFV  263 (265)
T ss_dssp             -------HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTCCCCCC
T ss_pred             -------HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCC
Confidence                   356788888888899999999999999999999999999999999988753

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=100.00  E-value=1.3e-50  Score=422.42  Aligned_cols=256  Identities=21%  Similarity=0.307  Sum_probs=229.0

Q ss_pred             CCCCcEEEEEec--CcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCC
Q 004891            1 MAAPRVTMEVGN--DGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG   77 (725)
Q Consensus         1 M~~~~i~~~~~~--~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~   77 (725)
                      |+++ |.++. +  ++|++||||||+ .|+||.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++.......
T Consensus        22 m~~~-v~~~~-~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~   99 (286)
T 3myb_A           22 MSEP-LLLQD-RDERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKEMRAEPSRE   99 (286)
T ss_dssp             --CC-SEEEE-ECTTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSSCSBCCBCHHHHHSSCCHH
T ss_pred             Ccee-EEEEE-ecCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcChhhhhccccHH
Confidence            6665 88888 6  899999999995 69999999999999999999999999999999999999999999987521111


Q ss_pred             cccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHH
Q 004891           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (725)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~  157 (725)
                      ....+.....+++ ++|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ ++|++++|+|++|..
T Consensus       100 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~-~~g~~~~L~r~vG~~  177 (286)
T 3myb_A          100 YYEKLFARCTDVM-LAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINVGLF-CSTPGVALSRNVGRK  177 (286)
T ss_dssp             HHHHHHHHHHHHH-HHHHHSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCC-CHHHHHHHTTTSCHH
T ss_pred             HHHHHHHHHHHHH-HHHHcCCCCEEEEECCeehHHHHHHHHhCCEEEEcCCCEEECcccccCCC-CchHHHHHHHHcCHH
Confidence            1222333445566 67999999999999999999999999999999999999999999999999 788899999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 004891          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (725)
Q Consensus       158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (725)
                      +|++|+++|++++|+||+++||||+|||++++.+++.++|+++++.|+.++                             
T Consensus       178 ~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~-----------------------------  228 (286)
T 3myb_A          178 AAFEMLVTGEFVSADDAKGLGLVNRVVAPKALDDEIEAMVSKIVAKPRAAV-----------------------------  228 (286)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHHSCHHHH-----------------------------
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCCcEecCHHHHHHHHHHHHHHHHhCCHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999999887533                             


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCCC
Q 004891          238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (725)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  296 (725)
                             ..+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|....
T Consensus       229 -------~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~aFlekr~p~f~g  280 (286)
T 3myb_A          229 -------AMGKALFYRQIETDIESAYADAGTTMACNMMDPSALEGVSAFLEKRRPEWHT  280 (286)
T ss_dssp             -------HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTSCCCCCC
T ss_pred             -------HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCCCCC
Confidence                   3567888888889999999999999999999999999999999999988654

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=100.00  E-value=1.8e-50  Score=415.26  Aligned_cols=246  Identities=23%  Similarity=0.323  Sum_probs=225.1

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccccc
Q 004891            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (725)
Q Consensus         4 ~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (725)
                      +.|.++. +++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++...       .+
T Consensus         6 ~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~-------~~   77 (255)
T 3p5m_A            6 NGISVEH-DGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTGGDTA-------GA   77 (255)
T ss_dssp             TTEEEEE-ETTEEEEEECCGGGTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCEECC---CHH-------HH
T ss_pred             ceEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCCChhhhcch-------HH
Confidence            4689998 7899999999995 7999999999999999999999999999999999999999999988621       23


Q ss_pred             chhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHH
Q 004891           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM  162 (725)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l  162 (725)
                      ....+.++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|
T Consensus        78 ~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l  156 (255)
T 3p5m_A           78 ADAANRVV-RAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRARTSRM  156 (255)
T ss_dssp             HHHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECGGGGGTCCCCTTHHHHTHHHHCHHHHHHH
T ss_pred             HHHHHHHH-HHHHhCCCCEEEEeCCeehhhHHHHHHHCCEEEEcCCcEEeCcccccCcCCCccHHHHHHHHhCHHHHHHH
Confidence            33445666 67999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCCh
Q 004891          163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  242 (725)
Q Consensus       163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (725)
                      +++|++++|+||+++||||+|+|++++.+++.++|++++..|+.++                                  
T Consensus       157 ~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~----------------------------------  202 (255)
T 3p5m_A          157 AMTAEKISAATAFEWGMISHITSADEYESVLTDVLRSVSGGPTLAF----------------------------------  202 (255)
T ss_dssp             HHHCCCEEHHHHHHTTSCSEECCTTCHHHHHHHHHHHHHTSCHHHH----------------------------------
T ss_pred             HHcCCCcCHHHHHHCCCCCEeeCHHHHHHHHHHHHHHHHhCCHHHH----------------------------------
Confidence            9999999999999999999999999999999999999999887533                                  


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                        ..+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|..
T Consensus       203 --~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f  252 (255)
T 3p5m_A          203 --GWTKRALAAATLAELEPVQAIEAEGQLALVETADFREGARAFRERRTPNF  252 (255)
T ss_dssp             --HHHHHHHHHHHCTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCC
T ss_pred             --HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence              35678888888899999999999999999999999999999999998875

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=100.00  E-value=2.8e-50  Score=419.70  Aligned_cols=256  Identities=25%  Similarity=0.358  Sum_probs=231.2

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc--
Q 004891            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV--   79 (725)
Q Consensus         3 ~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~--   79 (725)
                      ++.|.++. +++|++||||||+ .|+||.+|+++|.++++++++|+++|+|||||.|++||+|+|++++.........  
T Consensus        16 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   94 (279)
T 3g64_A           16 WRHLRVEI-TDGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSMDTAR   94 (279)
T ss_dssp             CSSEEEEE-ETTEEEEEESCGGGTTCBCHHHHHHHHHHHHHHHHTTCCSEEEEEECSSCSBCCBCTTTTHHHHTTCCHHH
T ss_pred             CCeEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceecCcCHHHHhhccccchhhH
Confidence            46799999 7899999999995 7999999999999999999999999999999999999999999998754332211  


Q ss_pred             -cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCC-CCchhhchHhhhhCHH
Q 004891           80 -SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVI-PGFGGTQRLPRLVGLS  157 (725)
Q Consensus        80 -~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~-p~~g~~~~l~r~vG~~  157 (725)
                       ..+....+.++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ |++|++++|++++|..
T Consensus        95 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~p~~g~~~~l~r~vG~~  173 (279)
T 3g64_A           95 LLDFNRMTGQVV-RAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVGLSGGDMGAAYLLPRVVGLG  173 (279)
T ss_dssp             HHHHHHHHHHHH-HHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCSCCTTHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHH-HHHHhCCCCEEEEEcCeeccccHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchhHHHHHHHHhCHH
Confidence             12223344556 67999999999999999999999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 004891          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (725)
Q Consensus       158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (725)
                      +|++|+++|++++|+||+++||||+|||++++.+++.++|++|++.|+.++                             
T Consensus       174 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~-----------------------------  224 (279)
T 3g64_A          174 HATRLLMLGDTVRAPEAERIGLISELTEEGRADEAARTLARRLADGPALAH-----------------------------  224 (279)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTCCSEECCTTCHHHHHHHHHHHHHTSCHHHH-----------------------------
T ss_pred             HHHHHHHcCCCcCHHHHHHCCCCCEecCchHHHHHHHHHHHHHHhCCHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999999887533                             


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCCC
Q 004891          238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (725)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  296 (725)
                             ..+|++++.....+++++++.|...+..++.|+|++|++++|++||+|+...
T Consensus       225 -------~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~g  276 (279)
T 3g64_A          225 -------AQTKALLTAELDMPLAAAVELDASTQALLMTGEDYAEFHAAFTEKRPPKWQG  276 (279)
T ss_dssp             -------HHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCCC
T ss_pred             -------HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCCC
Confidence                   3567889998899999999999999999999999999999999999887543

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=100.00  E-value=2.8e-50  Score=421.03  Aligned_cols=254  Identities=24%  Similarity=0.349  Sum_probs=223.4

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc----
Q 004891            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD----   78 (725)
Q Consensus         4 ~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~----   78 (725)
                      ..+.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++........    
T Consensus        24 ~~v~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~  102 (290)
T 3sll_A           24 FVLVDRP-RPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPIPHIGGLTQP  102 (290)
T ss_dssp             CEEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCC------CCCSSCTTCCHH
T ss_pred             eEEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEECCCCCeeCCcChHHHhcccccccccch
Confidence            4577888 7999999999995 899999999999999999999999999999999999999999999865432211    


Q ss_pred             --ccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCC-chhhchHhhhhC
Q 004891           79 --VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG-FGGTQRLPRLVG  155 (725)
Q Consensus        79 --~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~-~g~~~~l~r~vG  155 (725)
                        ...+......++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+ +|++++|++++|
T Consensus       103 ~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~L~r~vG  181 (290)
T 3sll_A          103 TIALRSMELLDEVI-LTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTASELGLSYLLPRAIG  181 (290)
T ss_dssp             HHHHHHHHHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTTTTTTSCSCCTTHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeehHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCcccHHHHHHHHhC
Confidence              112233344556 6799999999999999999999999999999999999999999999999999 999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHH
Q 004891          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK  235 (725)
Q Consensus       156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (725)
                      ..+|++|+++|++++|+||+++||||+|||++++.+++.++|++|++.|+.+++                          
T Consensus       182 ~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------  235 (290)
T 3sll_A          182 TSRASDIMLTGRDVDADEAERIGLVSRKVASESLLEECYAIGERIAGFSRPGIE--------------------------  235 (290)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHHSCHHHHH--------------------------
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCCHHHHH--------------------------
Confidence            999999999999999999999999999999999999999999999999875433                          


Q ss_pred             HhCCCChhHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHh-CCHhHHHHHHHHHhhhhhcCC
Q 004891          236 KTAPNMPQHQACLDVIEEGIV-HGGYSGVLKEAKVFKELV-MLDTSRGLVHVFFAQRATSKV  295 (725)
Q Consensus       236 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~l~~E~~~~~~~~-~s~~~~~~i~aF~~~r~~~~~  295 (725)
                                .+|++++.... .+++++++.|...+..++ .|+|++|++++|++||+|...
T Consensus       236 ----------~~K~~l~~~~~~~~l~~~l~~e~~~~~~~~~~s~d~~eg~~AFlekR~P~f~  287 (290)
T 3sll_A          236 ----------LTKRTIWSGLDAASLESHMHQEGLGQLYVRLLTDNFEEATAARKEKRPAEFR  287 (290)
T ss_dssp             ----------HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTTSCCCCC
T ss_pred             ----------HHHHHHHhhcccCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence                      56788888888 899999999999999999 999999999999999988754

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=6.8e-51  Score=419.21  Aligned_cols=251  Identities=24%  Similarity=0.298  Sum_probs=190.0

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccc
Q 004891            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (725)
Q Consensus         3 ~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (725)
                      +..|.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++...........
T Consensus         5 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   83 (256)
T 3qmj_A            5 MVTLQIDD-DNRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAEMQARITDPNFSE   83 (256)
T ss_dssp             -CCEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCHHHHHHHHHSSSCCC
T ss_pred             cceEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcccchhHHH
Confidence            35688998 7899999999995 699999999999999999999999999999999999999999999875432222233


Q ss_pred             cchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHH
Q 004891           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE  161 (725)
Q Consensus        82 ~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~  161 (725)
                      .....+.++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++
T Consensus        84 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~  162 (256)
T 3qmj_A           84 GKFGFRGLI-KALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQNAAW  162 (256)
T ss_dssp             CSSHHHHHH-HHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEEETTCEEECCGGGC---CCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEeCCCEEECcccccCCCCCccHHHHHHHHhCHHHHHH
Confidence            344556677 6799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCC
Q 004891          162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  241 (725)
Q Consensus       162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (725)
                      |+++|++++|+||+++||||+|||++++.+++.++|+++++.|+.++                                 
T Consensus       163 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~---------------------------------  209 (256)
T 3qmj_A          163 LLMSSEWIDAEEALRMGLVWRICSPEELLPEARRHAEILAAKPISSL---------------------------------  209 (256)
T ss_dssp             HHHSCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHH---------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCccEEeCHhHHHHHHHHHHHHHHhCCHHHH---------------------------------
Confidence            99999999999999999999999999999999999999999887533                                 


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhh
Q 004891          242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA  291 (725)
Q Consensus       242 ~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~  291 (725)
                         ..+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+
T Consensus       210 ---~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~  256 (256)
T 3qmj_A          210 ---MAVKHTMVEPNRAQIAAASARENAHFAELMGAQANAAALADFTDRRR  256 (256)
T ss_dssp             ---HHHHHHHHCC-------------------------------------
T ss_pred             ---HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCC
Confidence               35678888888889999999999999999999999999999999985

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=100.00  E-value=1.9e-50  Score=419.02  Aligned_cols=257  Identities=24%  Similarity=0.322  Sum_probs=229.3

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccC---C
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG---A   76 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~---~   76 (725)
                      |+ +.|.++. +++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.....   .
T Consensus         1 m~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   78 (269)
T 1nzy_A            1 MY-EAIGHRV-EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGV   78 (269)
T ss_dssp             CC-SSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHH
T ss_pred             CC-ceEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCcccCcCHHHHhhcccccCh
Confidence            66 5688998 7899999999995 899999999999999999999999999999999999999999998754210   1


Q ss_pred             Ccc-cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhC
Q 004891           77 GDV-SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG  155 (725)
Q Consensus        77 ~~~-~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG  155 (725)
                      .+. ..+....++++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus        79 ~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG  157 (269)
T 1nzy_A           79 RDHFRIAALWWHQMI-HKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVG  157 (269)
T ss_dssp             HHHHHHHHHHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEeCcccccCCCCCccHHHHHHHHhh
Confidence            100 11222344556 6699999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHH
Q 004891          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK  235 (725)
Q Consensus       156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (725)
                      ..+|++|++||++++|+||+++||||+|||++++.+++.++++++++.+|.++                           
T Consensus       158 ~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~---------------------------  210 (269)
T 1nzy_A          158 MRRAMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVARELAAAPTHLQ---------------------------  210 (269)
T ss_dssp             HHHHHHHHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHHHHHHHHHHSCHHHH---------------------------
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHcCCHHHH---------------------------
Confidence            99999999999999999999999999999999999999999999999887433                           


Q ss_pred             HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCCC
Q 004891          236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (725)
Q Consensus       236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  296 (725)
                               ..+|++++.+...+++++++.|.+.+..++.|+|+++++++|++||+|+..+
T Consensus       211 ---------~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~f~~  262 (269)
T 1nzy_A          211 ---------VMAKERFHAGWMQPVEECTEFEIQNVIASVTHPHFMPCLTRFLDGHRADRPQ  262 (269)
T ss_dssp             ---------HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHSTTHHHHHHHHHTTCCTTCCS
T ss_pred             ---------HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCC
Confidence                     2567788888888999999999999999999999999999999999988654

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=100.00  E-value=6.1e-50  Score=414.21  Aligned_cols=252  Identities=25%  Similarity=0.388  Sum_probs=228.0

Q ss_pred             CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc-CCCCCcCCCCchhhhhccCCCcccc
Q 004891            3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTG-NGGRFSGGFDINVFQKVHGAGDVSL   81 (725)
Q Consensus         3 ~~~i~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g-~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (725)
                      ++.+.++. +++|++||||||+.|+||.+|+++|.+++++++.|+++|+||||| .|++||+|+|++++.. .. .....
T Consensus         8 ~~~i~~~~-~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~-~~-~~~~~   84 (265)
T 2ppy_A            8 KQYLTVFK-EDGIAEIHLHINKSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRS-AD-PRFKT   84 (265)
T ss_dssp             CSSEEEEE-ETTEEEEEECSSTTCCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSTTEEECCBCHHHHTT-SC-HHHHH
T ss_pred             CCeEEEEe-eCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCeeeeCcCHHHHhc-cc-hhHHH
Confidence            45788888 789999999999779999999999999999999999999999999 9999999999999864 11 11112


Q ss_pred             cchhH-HHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCc-eEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891           82 MPDVS-VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT-QLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (725)
Q Consensus        82 ~~~~~-~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a-~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  159 (725)
                      +.... .+++ ..|.++||||||+|||+|+|||++|+++||+|||++++ +|++||+++|++|++|++++|++++|..+|
T Consensus        85 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~ag~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a  163 (265)
T 2ppy_A           85 QFCLFCNETL-DKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLARLIGYSRA  163 (265)
T ss_dssp             HHHHHHHHHH-HHHHHSSSEEEEEECSEEETHHHHHHHTSSEEEEETTCCCEECCGGGGTCCCTTTHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHH-HHHHcCCCCEEEEECCEEeeHHHHHHHhCCEEEEeCCCCEEECcccccCCCCCchHHHHHHHHhCHHHH
Confidence            22233 4566 67999999999999999999999999999999999999 999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (725)
Q Consensus       160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (725)
                      ++|+++|++++|+||+++||||+|||++++.+++.+++++++..++.++                               
T Consensus       164 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~-------------------------------  212 (265)
T 2ppy_A          164 LDMNITGETITPQEALEIGLVNRVFPQAETRERTREYARKLANSATYAV-------------------------------  212 (265)
T ss_dssp             HHHHHHCCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHH-------------------------------
T ss_pred             HHHHHhCCccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhCCHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999886433                               


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                           ..+|++++.+...+++++++.|.+.+..++.|+|+++++++|++||+|..
T Consensus       213 -----~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~~  262 (265)
T 2ppy_A          213 -----SNIKLAIMNGKEMPLNVAIRYEGELQNLLFRSEDAKEGLSAFLEKRQPNW  262 (265)
T ss_dssp             -----HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCC
T ss_pred             -----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence                 35678888888889999999999999999999999999999999988774

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=100.00  E-value=4.9e-50  Score=414.70  Aligned_cols=253  Identities=26%  Similarity=0.372  Sum_probs=220.9

Q ss_pred             CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc
Q 004891            1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (725)
Q Consensus         1 M~-~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~   78 (725)
                      |+ +++|.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++ ...  . ..
T Consensus         5 m~~~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~-~~~--~-~~   79 (265)
T 3rsi_A            5 MSAARELLVER-DGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSAYCVGGDLS-DGW--M-VR   79 (265)
T ss_dssp             ----CCEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC-------------
T ss_pred             CCCCCcEEEEE-ECCEEEEEEcCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCCC-ccc--c-cc
Confidence            54 57899999 7899999999995 79999999999999999999999999999999999999999998 221  1 11


Q ss_pred             ccccchhHHH-HHHHHH-h--hCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhh
Q 004891           79 VSLMPDVSVE-LVVNLI-E--DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV  154 (725)
Q Consensus        79 ~~~~~~~~~~-~~~~~l-~--~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~v  154 (725)
                      ...+...... ++ +.| .  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++
T Consensus        80 ~~~~~~~~~~~~~-~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~v  158 (265)
T 3rsi_A           80 DGSAPPLDPATIG-KGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQI  158 (265)
T ss_dssp             -----CCCHHHHH-HHTTSSCCCSSCEEEEECSCEETHHHHHHTTCSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHS
T ss_pred             hHHHHHHhHHHHH-HHHHHhcCCCCCEEEEECCeeeHHHHHHHHHCCEEEecCCCEEECchhccCCCCCccHHHHHHHHh
Confidence            1122222334 55 668 8  99999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHH
Q 004891          155 GLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA  234 (725)
Q Consensus       155 G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (725)
                      |..+|++|+++|++++|+||+++||||+|||++++.+++.++|+++++.|+.++                          
T Consensus       159 G~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~--------------------------  212 (265)
T 3rsi_A          159 PYTKAMEMILTGEPLTAFEAYHFGLVGHVVPAGTALDKARSLADRIVRNGPLAV--------------------------  212 (265)
T ss_dssp             CHHHHHHHHHHCCCEEHHHHHHTTSCSEEESTTCHHHHHHHHHHHHHTSCHHHH--------------------------
T ss_pred             CHHHHHHHHHcCCCCCHHHHHHCCCccEecChhHHHHHHHHHHHHHHhCCHHHH--------------------------
Confidence            999999999999999999999999999999999999999999999999987533                          


Q ss_pred             HHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCC
Q 004891          235 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (725)
Q Consensus       235 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  295 (725)
                                ..+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|...
T Consensus       213 ----------~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  263 (265)
T 3rsi_A          213 ----------RNAKEAIVRSGWLAEEDARAIEARLTRPVITSADAREGLAAFKEKREARFT  263 (265)
T ss_dssp             ----------HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTSCCCCC
T ss_pred             ----------HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence                      356888999888999999999999999999999999999999999988753

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=100.00  E-value=4.3e-50  Score=413.49  Aligned_cols=250  Identities=26%  Similarity=0.379  Sum_probs=222.1

Q ss_pred             CcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccccc
Q 004891            4 PRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (725)
Q Consensus         4 ~~i~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (725)
                      +.+.++. +++|++|||||| +.|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.......   .+
T Consensus         3 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~---~~   78 (257)
T 2ej5_A            3 ETIRYEV-KGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEMDHG---DV   78 (257)
T ss_dssp             SSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCC-------CHH---HH
T ss_pred             CceEEEe-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCcCHHHHhhccchh---HH
Confidence            5788998 789999999999 589999999999999999999999999999999999999999999886422111   11


Q ss_pred             ch-hHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHH
Q 004891           83 PD-VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE  161 (725)
Q Consensus        83 ~~-~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~  161 (725)
                      .. ...+++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++
T Consensus        79 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~  157 (257)
T 2ej5_A           79 LRSRYAPMM-KALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPRLVGRAKALE  157 (257)
T ss_dssp             HHHTHHHHH-HHHHHCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHH-HHHHhCCCCEEEEECccccchhHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHHHHH
Confidence            11 234556 6699999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCC
Q 004891          162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  241 (725)
Q Consensus       162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (725)
                      |++||++++|+||+++||||+|||++++.+++.+++++++..|+.++                                 
T Consensus       158 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~---------------------------------  204 (257)
T 2ej5_A          158 LAVLGEKVTAEEAAALGLATKVIPLSDWEEEVKQFAERLSAMPTKAI---------------------------------  204 (257)
T ss_dssp             HHHHCCCEEHHHHHHHTCCSEEECGGGHHHHHHHHHHHHHTSCHHHH---------------------------------
T ss_pred             HHHhCCccCHHHHHHcCCcceecChhHHHHHHHHHHHHHHhCCHHHH---------------------------------
Confidence            99999999999999999999999999999999999999999886433                                 


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       242 ~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                         ..+|++++.+...+++++++.|.+.+..++.|+|+++++++|++||+|.+
T Consensus       205 ---~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~  254 (257)
T 2ej5_A          205 ---GLIKRLLRESEETTFDRYLEREAECQRIAGLTSDHREGVKAFFEKRKPLF  254 (257)
T ss_dssp             ---HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTTCCCCC
T ss_pred             ---HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCChHHHHHHHHHhcCCCCCC
Confidence               25678888888889999999999999999999999999999999988764

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=100.00  E-value=1e-50  Score=419.56  Aligned_cols=253  Identities=23%  Similarity=0.325  Sum_probs=227.5

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccc
Q 004891            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (725)
Q Consensus         3 ~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (725)
                      ++.|.++. +++|++||||||+ .|+||.+|+++|.++++++++|+++|+|||||.|++||+|+|++++.......... 
T Consensus         6 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~-   83 (265)
T 3qxz_A            6 VTELHEEI-RDGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAETFAAPRNP-   83 (265)
T ss_dssp             CCEEEEEE-ETTEEEEEEECGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCSTTCTTCCCCCCSS-
T ss_pred             cceEEEEE-ECCEEEEEEcCCccCCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCccccCcChHHHhhccchhHHH-
Confidence            36788998 7899999999995 79999999999999999999999999999999999999999999987643222111 


Q ss_pred             cchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHH
Q 004891           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE  161 (725)
Q Consensus        82 ~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~  161 (725)
                      .... +.++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++
T Consensus        84 ~~~~-~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~  161 (265)
T 3qxz_A           84 DFSA-SPVQ-PAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPDALAHWTLPRLVGTAVAAE  161 (265)
T ss_dssp             CCCS-CCSS-SCGGGSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCCEECCGGGGTSCCCTTHHHHTHHHHHHHHHHH
T ss_pred             HHHH-HHHH-HHHHhCCCCEEEEECCEEehHhHHHHHHCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHH
Confidence            1112 3445 5689999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhc-CchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCC
Q 004891          162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-RKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  240 (725)
Q Consensus       162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (725)
                      |+++|++++|+||+++||||+|||++++.+++.++|++++.. ||.++                                
T Consensus       162 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~p~a~--------------------------------  209 (265)
T 3qxz_A          162 LLLTGASFSAQRAVETGLANRCLPAGKVLGAALRMAHDIATNVAPESA--------------------------------  209 (265)
T ss_dssp             HHHHCCCBCHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHHHSCHHHH--------------------------------
T ss_pred             HHHcCCCcCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHccCCHHHH--------------------------------
Confidence            999999999999999999999999999999999999999998 87533                                


Q ss_pred             ChhHHHHHHHHHHhhcCCHHHH--HHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCC
Q 004891          241 MPQHQACLDVIEEGIVHGGYSG--VLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (725)
Q Consensus       241 ~~a~~~~~~~~~~~~~~~~~~~--l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  295 (725)
                          ..+|++++.....+++++  ++.|.+.+..++.|+|++|++++|++||+|...
T Consensus       210 ----~~~K~~l~~~~~~~l~~~~~l~~e~~~~~~~~~s~d~~egi~Af~ekr~P~f~  262 (265)
T 3qxz_A          210 ----ALTKRLLWDAQMTGMSAAEVAARETADHLRLMGSQDAAEGPRAFIDGRPPRWA  262 (265)
T ss_dssp             ----HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSTHHHHHHHHHHHTSCCCCC
T ss_pred             ----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHcCCCCCCC
Confidence                256778888888888888  999999999999999999999999999998754

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=100.00  E-value=6.1e-50  Score=412.56  Aligned_cols=253  Identities=30%  Similarity=0.462  Sum_probs=225.9

Q ss_pred             CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc
Q 004891            1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (725)
Q Consensus         1 M~-~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~   78 (725)
                      |+ +..+.++. +++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++......  
T Consensus         1 m~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~--   77 (258)
T 2pbp_A            1 MSEFVSIAARQ-EGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAKDDPI--   77 (258)
T ss_dssp             ---CCSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCCCHHHHHTCCHH--
T ss_pred             CCCcceEEEEe-eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccch--
Confidence            55 46788888 7899999999995 7999999999999999999999999999999999999999999988642210  


Q ss_pred             ccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHH
Q 004891           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (725)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~  158 (725)
                      ...+.... +++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+
T Consensus        78 ~~~~~~~~-~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~  155 (258)
T 2pbp_A           78 RLEWLNQF-ADW-DRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKR  155 (258)
T ss_dssp             HHHHHCTT-HHH-HHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred             hHHHHHHH-HHH-HHHHhCCCCEEEEEcCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCcccHHHHHHHHhCHHH
Confidence            01111112 455 5689999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 004891          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (725)
Q Consensus       159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (725)
                      |++|+++|++++|+||+++||||+|+|++++.+++.++|++++..+|.++                              
T Consensus       156 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~------------------------------  205 (258)
T 2pbp_A          156 ALEWLWTGARMSAKEAEQLGIVNRVVSPELLMEETMRLAGRLAEQPPLAL------------------------------  205 (258)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHH------------------------------
T ss_pred             HHHHHHcCCccCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCCHHHH------------------------------
Confidence            99999999999999999999999999999999999999999999886433                              


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                            ..+|++++.+...+++++++.|.+.+..++.|+|+++++++|++||+|..
T Consensus       206 ------~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~  255 (258)
T 2pbp_A          206 ------RLIKEAVQKAVDYPLYEGMQFERKNFYLLFASEDQKEGMAAFLEKRKPRF  255 (258)
T ss_dssp             ------HHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCC
T ss_pred             ------HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCCC
Confidence                  35678888888889999999999999999999999999999999988764

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}

Probab=100.00  E-value=3.1e-50  Score=419.41  Aligned_cols=248  Identities=25%  Similarity=0.334  Sum_probs=221.2

Q ss_pred             CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccC----CC
Q 004891            3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHG----AG   77 (725)
Q Consensus         3 ~~~i~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~----~~   77 (725)
                      ++.|.++. +++|++||||||+.|+||.+|+++|.+++++++.|+++|+|||||.| ++||+|+|++++.....    ..
T Consensus         8 ~~~i~~~~-~~~va~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~   86 (287)
T 3gkb_A            8 YSTLRVSS-EHGVARIILDNPPVNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQELAA   86 (287)
T ss_dssp             CSSEEEEE-ETTEEEEEECCTTTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHHHHHH
T ss_pred             CCeEEEEE-ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHHhhccccchhhH
Confidence            77899999 79999999999999999999999999999999999999999999998 79999999998864210    00


Q ss_pred             cccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeC-CceEeCcccccCCCCCchhhchHhhhhCH
Q 004891           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAP-KTQLGLPELTLGVIPGFGGTQRLPRLVGL  156 (725)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~-~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~  156 (725)
                      ...........++ ..|.++||||||+|||+|+|||++|+++||+|||++ +++|++||+++|++|++|++++|+|++|.
T Consensus        87 ~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~  165 (287)
T 3gkb_A           87 SAPADVNVFQAVG-ELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGGTQYLRGRVGR  165 (287)
T ss_dssp             TSCTTCCTTHHHH-HHHHHCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECGGGGGTSCCCSSHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCCchHHHHHHHHhCH
Confidence            1112223345666 679999999999999999999999999999999999 99999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHH
Q 004891          157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK  236 (725)
Q Consensus       157 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (725)
                      .+|++|++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                           
T Consensus       166 ~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~a~~---------------------------  218 (287)
T 3gkb_A          166 NRALEVVLTADLFDAETAASYGWINRALPADELDEYVDRVARNIAALPDGVIE---------------------------  218 (287)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSCTTHHH---------------------------
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCCcEEeChhHHHHHHHHHHHHHHcCCHHHHH---------------------------
Confidence            99999999999999999999999999999999999999999999999875433                           


Q ss_pred             hCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhh
Q 004891          237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA  291 (725)
Q Consensus       237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~  291 (725)
                               .+|++++..   ...++++.|.+.+..++.|+|++|++++|++||+
T Consensus       219 ---------~~K~~l~~~---~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekr~  261 (287)
T 3gkb_A          219 ---------AAKRSLPAD---DLKEGLLGENDAWAATFSLPAAQQLISGGLKDGA  261 (287)
T ss_dssp             ---------HHHHHSCCC---CCHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTTT
T ss_pred             ---------HHHHHHHcc---CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Confidence                     455666553   3468999999999999999999999999999987

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=9e-50  Score=427.16  Aligned_cols=291  Identities=20%  Similarity=0.283  Sum_probs=230.8

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCC--c
Q 004891            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAG--D   78 (725)
Q Consensus         3 ~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~--~   78 (725)
                      ++.|.+++ +++|++||||||+ +|+||.+|+.+|.+++++++.|++||+|||||.| ++||+|+|++++.......  .
T Consensus         8 ~e~vl~e~-~~~Va~itLnrP~~~NAl~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~~~~~~~~~~~~~   86 (353)
T 4hdt_A            8 NEDVLVNV-EGGVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAKADGAE   86 (353)
T ss_dssp             CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHHHHHHHHHTTSHH
T ss_pred             CCcEEEEE-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHHHHhhccchhhHH
Confidence            57899999 8999999999995 7999999999999999999999999999999998 6999999999986532211  1


Q ss_pred             ccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHH
Q 004891           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (725)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~  158 (725)
                      ...+......++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .+
T Consensus        87 ~~~~~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~iGl~p~~g~~~~l~rl~g-~~  164 (353)
T 4hdt_A           87 ARRFWFDEYRLN-AHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDTTKMAMPEVGIGFIPDVGGTYLLSRAPG-KL  164 (353)
T ss_dssp             HHHHHHHHHHHH-HHHHHCSSCEEEEECBEEETHHHHHHTTSSEEEECTTCEEECCGGGGTCCCCTTHHHHHHTSST-TH
T ss_pred             HHHHHHHHHHHH-HHHHHCCCCEEEEeECceeecCccccCCcCeeccchhccccCcccccccCCCccceehhhhhhh-HH
Confidence            222333344555 6699999999999999999999999999999999999999999999999999999999999999 69


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhh---------h----hhccCCCCChHHHHH
Q 004891          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR---------S----LHRTDKLGSLSEARE  225 (725)
Q Consensus       159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~---------~----~~~~~~~~~~~~~~~  225 (725)
                      +++|++||++++|+||+++||||+|||++++.+.+.+++.+..........         .    ..+.-...++....+
T Consensus       165 a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~la~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~f~~~~~~~i~~  244 (353)
T 4hdt_A          165 GLHAALTGAPFSGADAIVMGFADHYVPHDKIDEFTRAVIADGVDAALAAHAQEPPASPLAEQRSWIDECYTGDTVADIIA  244 (353)
T ss_dssp             HHHHHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHHHCHHHHHHHHCBCCCCCHHHHTHHHHHHHTTCSSHHHHHH
T ss_pred             HHHHHhcCCCCCHHHHHHcCCCcEEeCHHHHHHHHHHHHHhchhHHHHHhcccCCccchHHHHHHHHHHhCCCCHHHHHH
Confidence            999999999999999999999999999999999999988764322110000         0    000000011111111


Q ss_pred             HHH-----HHHHHHHHhCCCCh-hHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHhCCHhHHHHHHHHH--hhhhhcCCC
Q 004891          226 VLK-----LARLQAKKTAPNMP-QHQACLDVIEEGIVH-GGYSGVLKEAKVFKELVMLDTSRGLVHVFF--AQRATSKVP  296 (725)
Q Consensus       226 ~~~-----~~~~~~~~~~~~~~-a~~~~~~~~~~~~~~-~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~--~~r~~~~~~  296 (725)
                      .+.     .+....++...+.| +...+|+.++++... +++++++.|.+.+..++.|+|++||+++|+  +||+|+++|
T Consensus       245 ~L~~~~~~~a~~~a~~la~~sP~a~~~~k~~l~~~~~~~sl~e~l~~E~~~~~~~~~s~D~~EGvrAfl~dekR~P~w~p  324 (353)
T 4hdt_A          245 ALRAHDAPAAGEAADLIATRSPIALSVTLESVRRAAKLQSLEDTLRQEYRVSCASLKSHDLVEGIRAQLVDKDRNPKWRP  324 (353)
T ss_dssp             HHHHHCSHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCCCSS
T ss_pred             HHHhcccHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhCCchHHHHHhhhhhCcCCCCCCCC
Confidence            111     12222333344444 678899999998875 799999999999999999999999999999  999999876

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}

Probab=100.00  E-value=5.8e-50  Score=411.44  Aligned_cols=249  Identities=28%  Similarity=0.440  Sum_probs=225.3

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (725)
                      |+ +.|.++. +++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.........
T Consensus         5 m~-~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   82 (256)
T 3trr_A            5 MA-DEVLIEQ-RDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFVSGEAVLSE   82 (256)
T ss_dssp             CC-CSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEGGGCCCCCBCHHHHHHTCCCEET
T ss_pred             CC-CceEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceecCcCHHHhccccchhhh
Confidence            55 5689998 7999999999995 7999999999999999999999999999999999999999999998753221111


Q ss_pred             cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (725)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  159 (725)
                      ..+     . + ..+ ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus        83 ~~~-----~-~-~~~-~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  154 (256)
T 3trr_A           83 RGL-----G-F-TNV-PPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVA  154 (256)
T ss_dssp             TEE-----T-T-SSS-CCSSCEEEEECSBCCTHHHHHHHTSSEEEEETTCEECCCGGGGTCCCCSSHHHHHHHHSCHHHH
T ss_pred             hhh-----h-H-HHh-cCCCCEEEEECCeeeechhHHHHhCCEEEECCCCEEEehhhccCCCCCccHHHHHHHHhCHHHH
Confidence            111     1 2 225 8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (725)
Q Consensus       160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (725)
                      ++|+++|++++|+||+++||||+|||++++.+++.++|+++++.|+.++                               
T Consensus       155 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~-------------------------------  203 (256)
T 3trr_A          155 MELALTGESFTAEDAAKYGFINRLVDDGQALDTALELAAKITANGPLAV-------------------------------  203 (256)
T ss_dssp             HHHHHHCCCEEHHHHGGGTCCSEEECTTCHHHHHHHHHHHHHTSCHHHH-------------------------------
T ss_pred             HHHHHhCCCcCHHHHHHCCCeeEecChHHHHHHHHHHHHHHHcCCHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999887533                               


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCC
Q 004891          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (725)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  295 (725)
                           ..+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|.+.
T Consensus       204 -----~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  254 (256)
T 3trr_A          204 -----AATKRIIIESASWAPEEAFAKQGEILMPIFVSEDAKEGAKAFAEKRAPVWQ  254 (256)
T ss_dssp             -----HHHHHHHHHGGGSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred             -----HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCC
Confidence                 356888999999999999999999999999999999999999999988754

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0

Probab=100.00  E-value=3.2e-50  Score=418.40  Aligned_cols=253  Identities=21%  Similarity=0.287  Sum_probs=220.9

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccC-----C-
Q 004891            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG-----A-   76 (725)
Q Consensus         4 ~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~-----~-   76 (725)
                      +.|.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.....     . 
T Consensus        11 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   89 (274)
T 3tlf_A           11 DTIKYEV-DGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKEIPEDGKVIYERPY   89 (274)
T ss_dssp             SSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBC--------------CT
T ss_pred             CceEEEE-ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEeCCCCCcccCcCHHHHhhccccccccch
Confidence            4789999 7899999999995 899999999999999999999999999999999999999999999865332     0 


Q ss_pred             CcccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCH
Q 004891           77 GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL  156 (725)
Q Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~  156 (725)
                      ..........+.++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| +|++++|+|++|.
T Consensus        90 ~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p-~g~~~~L~r~vG~  167 (274)
T 3tlf_A           90 LSTYDQWEAPQEGT-PPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLVA-GRELVRVSRVLPR  167 (274)
T ss_dssp             TCSGGGGSCCCTTC-CCTTSCCSCEEEEECSEEEGGGHHHHHHSSEEEEETTCEEECCGGGGTCCC-CHHHHHHTTTSCH
T ss_pred             hhHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCccc-chHHHHHHHHhCH
Confidence            11111111223344 568899999999999999999999999999999999999999999999999 9999999999999


Q ss_pred             HHHHHHHHcCC--CCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHH
Q 004891          157 SKAIEMMLLSK--SITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA  234 (725)
Q Consensus       157 ~~a~~l~l~g~--~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (725)
                      .+|++|++||+  +++|+||+++||||+|||++++.+++.++|+++++.|+.++                          
T Consensus       168 ~~A~~l~ltg~~~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~--------------------------  221 (274)
T 3tlf_A          168 SIALRMALMGKHERMSAQRAYELGLISEIVEHDRLLERAHEIADIVNSNAPLAV--------------------------  221 (274)
T ss_dssp             HHHHHHHHHGGGCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHH--------------------------
T ss_pred             HHHHHHHHcCCCCccCHHHHHHCCCCCeecCHHHHHHHHHHHHHHHHhCCHHHH--------------------------
Confidence            99999999999  99999999999999999999999999999999999987533                          


Q ss_pred             HHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCC
Q 004891          235 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (725)
Q Consensus       235 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  295 (725)
                                ..+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|...
T Consensus       222 ----------~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  272 (274)
T 3tlf_A          222 ----------RGTRLAILKGLNVPLHEAEILAETFRERVLRTEDAAEGPRAFVEKRQPNWQ  272 (274)
T ss_dssp             ----------HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred             ----------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCC
Confidence                      356888999989999999999999999999999999999999999988753

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}

Probab=100.00  E-value=8.3e-51  Score=425.98  Aligned_cols=256  Identities=25%  Similarity=0.334  Sum_probs=183.4

Q ss_pred             CCcEEEEEecC-cEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhh---ccCCC
Q 004891            3 APRVTMEVGND-GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK---VHGAG   77 (725)
Q Consensus         3 ~~~i~~~~~~~-~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~---~~~~~   77 (725)
                      ++.|.++. ++ +|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++..   .....
T Consensus        28 ~~~v~~~~-~~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~  106 (298)
T 3qre_A           28 QDAVLYEA-TPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAGAYLGSADAAAGYDKTM  106 (298)
T ss_dssp             CCSEEEEE-CTTSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC---------------
T ss_pred             CCeEEEEE-eCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcccccccc
Confidence            47799999 67 99999999995 799999999999999999999999999999999999999999999864   11110


Q ss_pred             ----cccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhh
Q 004891           78 ----DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL  153 (725)
Q Consensus        78 ----~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~  153 (725)
                          ....+......++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|+
T Consensus       107 ~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~  185 (298)
T 3qre_A          107 AKAKDANLADLVGERPP-HFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRL  185 (298)
T ss_dssp             --------------CCT-TGGGGSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECCCCHHHHHCTTSHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHH-HHHHhCCCCEEEEECCceeecchHHHhhCCEEEEcCCCEEECcccccCCCcchhHHHHHHHh
Confidence                1111111222334 56889999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhc-CchhhhhhhccCCCCChHHHHHHHHHHHH
Q 004891          154 VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-RKPWIRSLHRTDKLGSLSEAREVLKLARL  232 (725)
Q Consensus       154 vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (725)
                      +|..+|++|+++|++++|+||+++||||+|||++++.+++.++|++|+.. ||.++                        
T Consensus       186 vG~~~A~ellltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~la~~~~p~a~------------------------  241 (298)
T 3qre_A          186 TSWAVALDLLLSGRTFLAEEAAQLGLVKEVVTPEQLMPRALEYAEDIARYCSPSSM------------------------  241 (298)
T ss_dssp             SCHHHHHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHHHSCHHHH------------------------
T ss_pred             cCHHHHHHHHHcCCCCCHHHHHHcCCCeEecCHHHHHHHHHHHHHHHHccCCHHHH------------------------
Confidence            99999999999999999999999999999999999999999999999998 76433                        


Q ss_pred             HHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCCC
Q 004891          233 QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (725)
Q Consensus       233 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  296 (725)
                                  ..+|++++.....+++++++.|...+..++.|+|++|++++|++||+|...+
T Consensus       242 ------------~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~Egv~AF~ekR~P~f~~  293 (298)
T 3qre_A          242 ------------AVIKRQVYGDATRDVVEATSHAEVLLREAMPRPDVIEGIVSFLEKRPPQFPS  293 (298)
T ss_dssp             ------------HHHHHHHHGGGGC---------------------------------------
T ss_pred             ------------HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCC
Confidence                        3568889999999999999999999999999999999999999999998654

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=100.00  E-value=7.1e-50  Score=412.79  Aligned_cols=253  Identities=21%  Similarity=0.276  Sum_probs=227.1

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc-CC-CCCcCCCCchhhhhccCCC
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTG-NG-GRFSGGFDINVFQKVHGAG   77 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g-~g-~~F~aG~Dl~~~~~~~~~~   77 (725)
                      |+|+.+.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+ +|+||||| .| ++||+|+|++++.......
T Consensus         1 m~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~-vr~vVltg~~g~~~F~aG~Dl~~~~~~~~~~   78 (261)
T 1ef8_A            1 MSYQYVNVVT-INKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIHELPSGGRDP   78 (261)
T ss_dssp             CCCSSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTCSTT-CCEEEEECCTTCSEEECCSCSTTC-----CT
T ss_pred             CCcceEEEEE-eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCC-ceEEEEECCCCCCeeecCcChHhhhccCchh
Confidence            8899999999 7899999999995 89999999999999999999999 99999999 98 9999999999886432111


Q ss_pred             cccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHH
Q 004891           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (725)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~  157 (725)
                       . .......+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus        79 -~-~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~  155 (261)
T 1ef8_A           79 -L-SYDDPLRQIT-RMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFH  155 (261)
T ss_dssp             -T-CTTSHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHH
T ss_pred             -H-HHHHHHHHHH-HHHHhCCCCEEEEECCEEEeHhHHHHHhCCEEEecCCCEEeCchhccCCCCCccHHHHHHHHhCHH
Confidence             1 1223345666 669999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 004891          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (725)
Q Consensus       158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (725)
                      +|++|+++|++++|+||+++||||+|||++++.+++.+++++++..|+.++                             
T Consensus       156 ~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~-----------------------------  206 (261)
T 1ef8_A          156 IVKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAI-----------------------------  206 (261)
T ss_dssp             HHHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHTTSCHHHH-----------------------------
T ss_pred             HHHHHHHcCCccCHHHHHHCCCcccccCHHHHHHHHHHHHHHHHhCCHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999999886433                             


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHH--HHhCCHhHHHHHHHHHhhhhhcC
Q 004891          238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFK--ELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~--~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                             ..+|++++.....+++++++.|.+.+.  .++.|+|+++++++|++||+|..
T Consensus       207 -------~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~d~~eg~~af~ekr~p~~  258 (261)
T 1ef8_A          207 -------AVIKEELRVLGEAHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKRKPNF  258 (261)
T ss_dssp             -------HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCC
T ss_pred             -------HHHHHHHHHhhcCCHHHHHHHHHHHhhHHHhhcCHHHHHHHHHHHccCCCCC
Confidence                   256778888888888999999999999  99999999999999999988774

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=100.00  E-value=1.1e-49  Score=415.71  Aligned_cols=252  Identities=21%  Similarity=0.340  Sum_probs=224.8

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccccc
Q 004891            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (725)
Q Consensus         4 ~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (725)
                      ..+.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++...........+
T Consensus        33 ~~v~~~~-~~~V~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~  111 (287)
T 2vx2_A           33 RPTSARQ-LDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEEQGRDYHAEV  111 (287)
T ss_dssp             CSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHTTTTCTTCCEEEEEESSSEEECCSCCC-CCGGGCHHHHHHH
T ss_pred             cceEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhcccchhHHHHH
Confidence            5688888 7899999999995 7999999999999999999999999999999999999999999987543211111112


Q ss_pred             chhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHH
Q 004891           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM  162 (725)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l  162 (725)
                      .....+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++ |++++|..+|++|
T Consensus       112 ~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~-L~r~vG~~~A~~l  189 (287)
T 2vx2_A          112 FQTCSKVM-MHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPRKVALEM  189 (287)
T ss_dssp             HHHHHHHH-HHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCHHHHHH-HHTTSCHHHHHHH
T ss_pred             HHHHHHHH-HHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEcCCCEEECchhhhCCCCchHHHH-HHHHhhHHHHHHH
Confidence            22344556 669999999999999999999999999999999999999999999999999999999 9999999999999


Q ss_pred             HHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCCh
Q 004891          163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  242 (725)
Q Consensus       163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (725)
                      ++||++++|+||+++||||+|||++++.+++.++|++|++.++.++                                  
T Consensus       190 lltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~----------------------------------  235 (287)
T 2vx2_A          190 LFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKIASLSRPVV----------------------------------  235 (287)
T ss_dssp             HHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHH----------------------------------
T ss_pred             HHhCCCCCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHcCCHHHH----------------------------------
Confidence            9999999999999999999999999999999999999999887433                                  


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                        ..+|++++.....+++++++.|.+.+..++.|+|+++++++|++||+|.+
T Consensus       236 --~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~f  285 (287)
T 2vx2_A          236 --SLGKATFYKQLPQDLGTAYYLTSQAMVDNLALRDGQEGITAFLQKRKPVW  285 (287)
T ss_dssp             --HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCC
T ss_pred             --HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence              24677888888889999999999999999999999999999999988764

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A

Probab=100.00  E-value=2.8e-50  Score=414.86  Aligned_cols=248  Identities=26%  Similarity=0.325  Sum_probs=206.6

Q ss_pred             cEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccc
Q 004891            5 RVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMP   83 (725)
Q Consensus         5 ~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~   83 (725)
                      .|.++. +++|++||||||+ .|+||.+|+++|.++++++++|+++|+|||||.|++||+|+|++++....... ...  
T Consensus        12 ~v~~~~-~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~~~--   87 (262)
T 3r9q_A           12 AVRVEK-AGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTFCAGADLKAMGTDRGNE-LHP--   87 (262)
T ss_dssp             SEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCTTTTTSTTSCC-CCT--
T ss_pred             EEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHhccChhh-HHH--
Confidence            588998 7899999999995 79999999999999999999999999999999999999999999987543221 110  


Q ss_pred             hhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHH
Q 004891           84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM  163 (725)
Q Consensus        84 ~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~  163 (725)
                      .....++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++|+
T Consensus        88 ~~~~~~~-~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~  166 (262)
T 3r9q_A           88 HGPGPMG-PSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLIDGGTIRLPRLIGHSRAMDLI  166 (262)
T ss_dssp             TSSCTTS-STTCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTHHHHTCCCCSSHHHHHHHHHCHHHHHHHH
T ss_pred             hhhhHHH-HHHHhCCCCEEEEECCeeehhhhHHHHhCCEEEEeCCCEEecchhccCCCCCccHHHHHHHHhCHHHHHHHH
Confidence            0011122 336789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChh
Q 004891          164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ  243 (725)
Q Consensus       164 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  243 (725)
                      +||++++|+||+++||||+|||++++.+++.++|++|++.|+.++                                   
T Consensus       167 ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~-----------------------------------  211 (262)
T 3r9q_A          167 LTGRPVHANEALDIGLVNRVVARGQAREAAETLAAEIAAFPQQCV-----------------------------------  211 (262)
T ss_dssp             HHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHHH-----------------------------------
T ss_pred             HcCCcCCHHHHHHcCCccEecChhHHHHHHHHHHHHHHhCCHHHH-----------------------------------
Confidence            999999999999999999999999999999999999999987543                                   


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCC
Q 004891          244 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (725)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  295 (725)
                       ..+|++++.....+++++++.|.+ +..++.| |++|++++|++||+|.+.
T Consensus       212 -~~~K~~~~~~~~~~l~~~l~~e~~-~~~~~~s-d~~Eg~~AF~ekr~p~~~  260 (262)
T 3r9q_A          212 -RADRDSAIAQWGMAEEAALDNEFG-SIERVAT-EALEGAGRFAAGEGRHGA  260 (262)
T ss_dssp             -HHHHHHHHHTTTSCHHHHHHHHHT-HHHHHHC-------------------
T ss_pred             -HHHHHHHHhhhcCCHHHHHHHHHH-HHHHhcc-HHHHHHHHHHcCCCCCCC
Confidence             356888999999999999999999 9999999 999999999999988753

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=100.00  E-value=2e-49  Score=409.24  Aligned_cols=253  Identities=18%  Similarity=0.179  Sum_probs=217.8

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccC-CCc
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG-AGD   78 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~-~~~   78 (725)
                      |+++.|.++. +++|++||||||+ .|+||.+|+++|.+++++++.| ++|+|||||.|++||+|+|++++..... ...
T Consensus         4 m~~~~i~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   81 (267)
T 3hp0_A            4 VTYQTIKVRF-QASVCYITFHRPEANNTINDTLIEECLQVLNQCETS-TVTVVVLEGLPEVFCFGADFQEIYQEMKRGRK   81 (267)
T ss_dssp             -CCSSEEEEE-ETTEEEEEECCGGGTTCBCSHHHHHHHHHHHHHHHS-SCCEEEEECCSSCSBCCBCHHHHHHTTTTTCC
T ss_pred             CCCceEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhcC-CCEEEEEECCCCceecCcCHHHHHhcccChHH
Confidence            7788999999 8999999999995 7999999999999999999986 6999999999999999999999876421 122


Q ss_pred             ccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHH
Q 004891           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (725)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~  158 (725)
                      ..........++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++| +++|+|++|..+
T Consensus        82 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~  159 (267)
T 3hp0_A           82 QASSQEPLYDLW-MKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSELLFGLYPACV-LPFLIRRIGRQK  159 (267)
T ss_dssp             SCCCCHHHHHHH-HHHHHSSSEEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTT-HHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHH-HHHHcCCCCEEEEECCEEeehHHHHHHhCCEEEEcCCCEEECchhccCcCchhH-HHHHHHHhCHHH
Confidence            233444555667 679999999999999999999999999999999999999999999999999875 778999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 004891          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (725)
Q Consensus       159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (725)
                      |++|++||++++|+||+++||||+|||+.+  +.+.++++++++.||.+++                             
T Consensus       160 A~ellltg~~i~A~eA~~~GLV~~vv~~~~--~~~~~~a~~la~~~p~a~~-----------------------------  208 (267)
T 3hp0_A          160 AHYMTLMTKPISVQEASEWGLIDAFDAESD--VLLRKHLLRLRRLNKKGIA-----------------------------  208 (267)
T ss_dssp             HHHHHHHCCCBCHHHHHHHTSSSCBCSCTT--HHHHHHHHHHTTSCHHHHH-----------------------------
T ss_pred             HHHHHHcCCCCCHHHHHHCCCcceecCCHH--HHHHHHHHHHHhCCHHHHH-----------------------------
Confidence            999999999999999999999999998654  3467899999998875433                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCCC
Q 004891          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (725)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  296 (725)
                             .+|++++... ..++++++.|.+.+..++.|+|++|++++|++||+|.+.+
T Consensus       209 -------~~K~~l~~~~-~~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekr~P~~~~  258 (267)
T 3hp0_A          209 -------HYKQFMSSLD-HQVSRAKATALTANQDMFSDPQNQMGIIRYVETGQFPWED  258 (267)
T ss_dssp             -------HHHHHHHHHC-CHHHHHHHHHHHHHHHHTTSTTHHHHHHHHTTSCCC----
T ss_pred             -------HHHHHHHhcc-cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC
Confidence                   4566777653 3467888899999999999999999999999999999765

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=100.00  E-value=7.1e-50  Score=416.37  Aligned_cols=254  Identities=25%  Similarity=0.347  Sum_probs=215.3

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccc
Q 004891            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (725)
Q Consensus         3 ~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (725)
                      .++|.++. +++|++||||||+ .|+||.+|+++|.++++++++|+++|+|||||.|++||+|+|++++...........
T Consensus        19 ~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   97 (278)
T 4f47_A           19 GPDALVEQ-RGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGYFCAGMDLKAATKKPPGDSFKD   97 (278)
T ss_dssp             CCSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCC-------------------
T ss_pred             CCceEEEE-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCcccCCcChHhhhccchhhhHHH
Confidence            35688898 7899999999995 799999999999999999999999999999999999999999999875432211110


Q ss_pred             cchhHHHHHHHHHh---hCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHH
Q 004891           82 MPDVSVELVVNLIE---DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (725)
Q Consensus        82 ~~~~~~~~~~~~l~---~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~  158 (725)
                       ......++ +.+.   ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+
T Consensus        98 -~~~~~~~~-~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~  175 (278)
T 4f47_A           98 -GSYDPSRI-DALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQIPYTV  175 (278)
T ss_dssp             ----CTTCB-TTTTBSCCCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCTTSHHHHHHHHSCHHH
T ss_pred             -HHHHHHHH-HHHHHhcCCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHhCHHH
Confidence             00111223 3455   999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 004891          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (725)
Q Consensus       159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (725)
                      |++|+++|++++|+||+++||||+|||++++.+++.++|+++++.++.++                              
T Consensus       176 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~------------------------------  225 (278)
T 4f47_A          176 ACDLLLTGRHITAAEAKEMGLVGHVVPDGQALTKALEIAEIIAANGPLAV------------------------------  225 (278)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHHH------------------------------
T ss_pred             HHHHHHcCCcCCHHHHHHCCCceEeeChhHHHHHHHHHHHHHHhCCHHHH------------------------------
Confidence            99999999999999999999999999999999999999999999887533                              


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCC
Q 004891          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (725)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  295 (725)
                            ..+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|...
T Consensus       226 ------~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~Af~ekr~p~f~  276 (278)
T 4f47_A          226 ------QAILRTIRETEGMHENEAFKIDTRIGIEVFLSDDAKEGPQAFAQKRKPNFQ  276 (278)
T ss_dssp             ------HHHHHHHHHTTTSCHHHHHHHHHHHHGGGGGSSHHHHHHHHHHTTSCCCCC
T ss_pred             ------HHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCC
Confidence                  356889999999999999999999999999999999999999999988753

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=100.00  E-value=2.9e-49  Score=411.62  Aligned_cols=256  Identities=20%  Similarity=0.314  Sum_probs=227.1

Q ss_pred             CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCC---
Q 004891            2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG---   77 (725)
Q Consensus         2 ~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~---   77 (725)
                      +|++|.++.++++|++||||||+ .|+||.+|+++|.++++++++|+++|+|||||.|++||+|+|++++.......   
T Consensus         1 ~~~~v~~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~   80 (275)
T 1dci_A            1 AYESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGD   80 (275)
T ss_dssp             CCSSEEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCS
T ss_pred             CCceEEEEEcCCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhcccccccc
Confidence            36778898855789999999995 89999999999999999999999999999999999999999999986431100   


Q ss_pred             c-------ccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchH
Q 004891           78 D-------VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRL  150 (725)
Q Consensus        78 ~-------~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l  150 (725)
                      +       ...+....++++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l  159 (275)
T 1dci_A           81 DVARIAWYLRDLISRYQKTF-TVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRL  159 (275)
T ss_dssp             SHHHHHHHHHHHHHHHHHHH-HHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHG
T ss_pred             hhhhhhHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHH
Confidence            0       001112234455 56899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhCH-HHHHHHHHcCCCCCHHHHHHcCCcceecCc-chHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHH
Q 004891          151 PRLVGL-SKAIEMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLK  228 (725)
Q Consensus       151 ~r~vG~-~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (725)
                      ++++|. .+|++|++||++++|+||+++||||+|||+ +++.+++.++|+++++.||.+++                   
T Consensus       160 ~r~vG~~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~p~a~~-------------------  220 (275)
T 1dci_A          160 PKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQ-------------------  220 (275)
T ss_dssp             GGTCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHHSCHHHHH-------------------
T ss_pred             HHHhCcHHHHHHHHHcCCCCCHHHHHHcCCcceecCChHHHHHHHHHHHHHHHhCCHHHHH-------------------
Confidence            999999 999999999999999999999999999999 99999999999999999875333                   


Q ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhh---hhhcC
Q 004891          229 LARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ---RATSK  294 (725)
Q Consensus       229 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~---r~~~~  294 (725)
                                       .+|++++.+...+++++++.|.+.+..++.|+|++|++++|++|   |+|..
T Consensus       221 -----------------~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ek~~~r~p~f  272 (275)
T 1dci_A          221 -----------------GSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKKDSKSITF  272 (275)
T ss_dssp             -----------------HHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSHHHHHHHHHHHTTCCGGGCCC
T ss_pred             -----------------HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCCC
Confidence                             56778888888899999999999999999999999999999999   77764

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=1.1e-49  Score=411.90  Aligned_cols=253  Identities=23%  Similarity=0.242  Sum_probs=224.4

Q ss_pred             CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhc-c-CCCccc
Q 004891            3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV-H-GAGDVS   80 (725)
Q Consensus         3 ~~~i~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~-~-~~~~~~   80 (725)
                      ++.+.++.++++|++||||||+.|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++ +... . ......
T Consensus         9 ~~~v~~~~~~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~-~~~~~~~~~~~~~   87 (264)
T 1wz8_A            9 YPGLAFAWPRPGVLEITFRGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFG-LIEEMRASHEALL   87 (264)
T ss_dssp             CTTEEEEEEETTEEEEEECCSGGGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHH-HHHHHHHCHHHHH
T ss_pred             CCeEEEEEccCCEEEEEeCCCCcCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCCcccCccc-cccccccchHHHH
Confidence            456888774578999999999999999999999999999999999999999999999999999999 7542 1 101011


Q ss_pred             ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHH
Q 004891           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (725)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~  160 (725)
                      .+....++++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|+
T Consensus        88 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~  166 (264)
T 1wz8_A           88 RVFWEARDLV-LGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAK  166 (264)
T ss_dssp             HHHHHHHHHH-HHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHHHH
T ss_pred             HHHHHHHHHH-HHHHcCCCCEEEEECCeeechhHHHHHhCCEEEecCCCEEeCchhhcCcCCCccHHHHHHHHhCHHHHH
Confidence            1223344566 669999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCC
Q 004891          161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  240 (725)
Q Consensus       161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (725)
                      +|+++|++++|+||+++||||+|||++++.+++.+++++++..++.++                                
T Consensus       167 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~--------------------------------  214 (264)
T 1wz8_A          167 YHLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERLAQGPKEAL--------------------------------  214 (264)
T ss_dssp             HHHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHH--------------------------------
T ss_pred             HHHHcCCCCCHHHHHHCCCceeecChhHHHHHHHHHHHHHHhCCHHHH--------------------------------
Confidence            999999999999999999999999999999999999999999876433                                


Q ss_pred             ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       241 ~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                          ..+|++++..... ++++++.|.+.+..++.|+|+++++++|++||+|..
T Consensus       215 ----~~~K~~l~~~~~~-~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f  263 (264)
T 1wz8_A          215 ----HHTKHALNHWYRS-FLPHFELSLALEFLGFSGKELEEGLKALKEKRPPEF  263 (264)
T ss_dssp             ----HHHHHHHHHHHHT-THHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCC
T ss_pred             ----HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcChHHHHHHHHHHccCCCCC
Confidence                2457778877777 899999999999999999999999999999988763

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=100.00  E-value=1.7e-49  Score=412.01  Aligned_cols=256  Identities=24%  Similarity=0.285  Sum_probs=216.2

Q ss_pred             CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc-----CC-CCCcCCCCchhhhhcc
Q 004891            2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTG-----NG-GRFSGGFDINVFQKVH   74 (725)
Q Consensus         2 ~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g-----~g-~~F~aG~Dl~~~~~~~   74 (725)
                      +++.|.++. +++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||     .| ++||+|+|++++....
T Consensus         8 ~~~~v~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~Dl~~~~~~~   86 (275)
T 4eml_A            8 HYDDILYYK-AGGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGG   86 (275)
T ss_dssp             ECSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCBCCC------
T ss_pred             CCceEEEEE-ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCcChhhhhccc
Confidence            367899999 7999999999995 79999999999999999999999999999999     88 5999999999986421


Q ss_pred             CCCcccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhh
Q 004891           75 GAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV  154 (725)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~v  154 (725)
                      ..............++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++++|++++
T Consensus        87 ~~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~~g~~~L~r~v  165 (275)
T 4eml_A           87 YIDDQGTPRLNVLDLQ-RLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARIV  165 (275)
T ss_dssp             --------CCCHHHHH-HHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHH
T ss_pred             ccchhhHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHh
Confidence            1111111112234566 679999999999999999999999999999999999999999999999999998999999999


Q ss_pred             CHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHH
Q 004891          155 GLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA  234 (725)
Q Consensus       155 G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (725)
                      |..+|++|++||++++|+||+++||||+|||++++.+++.++|++|++.|+.+++                         
T Consensus       166 G~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------  220 (275)
T 4eml_A          166 GQKKAREIWYLCRQYSAQEAERMGMVNTVVPVDRLEEEGIQWAKEILSKSPLAIR-------------------------  220 (275)
T ss_dssp             CHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH-------------------------
T ss_pred             HHHHHHHHHHhCCCcCHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHH-------------------------
Confidence            9999999999999999999999999999999999999999999999999875433                         


Q ss_pred             HHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCCC
Q 004891          235 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (725)
Q Consensus       235 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  296 (725)
                                 .+|++++..... .....+.|.+.+..++.|+|++|++++|++||+|....
T Consensus       221 -----------~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~eg~~AF~ekR~p~f~~  270 (275)
T 4eml_A          221 -----------CLKAAFNADCDG-QAGLQELAGNATLLYYMTEEGSEGKQAFLEKRPPDFSQ  270 (275)
T ss_dssp             -----------HHHHHHHHTTSH-HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCTT
T ss_pred             -----------HHHHHHHhhhcc-chhHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCC
Confidence                       456667665432 34445677788889999999999999999999987543

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A

Probab=100.00  E-value=6.4e-50  Score=413.66  Aligned_cols=253  Identities=27%  Similarity=0.413  Sum_probs=224.0

Q ss_pred             CCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCccc
Q 004891            3 APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS   80 (725)
Q Consensus         3 ~~~i~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~   80 (725)
                      ++.|.++. +++|++|||||| +.|+||.+|+++|.++++++++|+++|+|||||.| ++||+|+|++++......... 
T Consensus         8 ~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~-   85 (267)
T 3r9t_A            8 APGALAER-RGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENLYHP-   85 (267)
T ss_dssp             CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCHHHHHTTCCCSCT-
T ss_pred             CCcEEEEE-ECCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceeCCcChHHHhcccchhhH-
Confidence            46799999 789999999999 58999999999999999999999999999999999 599999999998754322211 


Q ss_pred             ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHH
Q 004891           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (725)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~  160 (725)
                      .........+ . +.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|+
T Consensus        86 ~~~~~~~~~~-~-~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~  163 (267)
T 3r9t_A           86 DHPEWGFAGY-V-RHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAM  163 (267)
T ss_dssp             TCGGGCGGGT-T-TCCCSSCEEEEECSEECTHHHHHHHHSSEEEEETTCEECCGGGGTTCCCTTTHHHHHHHHSCHHHHH
T ss_pred             HHHhHHHHHH-H-HHhCCCCEEEEECCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHcCHHHHH
Confidence            1011100112 1 3489999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCC
Q 004891          161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  240 (725)
Q Consensus       161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (725)
                      +|++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                               
T Consensus       164 ~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~-------------------------------  212 (267)
T 3r9t_A          164 RLLLTGEPLSAAAARDWGLINEVVEAGSVLDAALALASAITVNAPLSVQ-------------------------------  212 (267)
T ss_dssp             HHHHHCCCEEHHHHHHHTSSSEEECTTCHHHHHHHHHHHHHTSCHHHHH-------------------------------
T ss_pred             HHHHcCCCCCHHHHHHCCCccEEcChhHHHHHHHHHHHHHHhCChHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999998875333                               


Q ss_pred             ChhHHHHHHH---HHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCC
Q 004891          241 MPQHQACLDV---IEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (725)
Q Consensus       241 ~~a~~~~~~~---~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  295 (725)
                           .+|++   ++.+...+++++++.|.+.+..++.|+|++|++++|++||+|...
T Consensus       213 -----~~K~~~~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~P~f~  265 (267)
T 3r9t_A          213 -----ASKRIAYGVDDGVVVGDEPGWDRTMREMRALLKSEDAKEGPRAFAEKREPVWQ  265 (267)
T ss_dssp             -----HHHHHHTTEETTEEGGGHHHHHHHHHHHHHHTTSSHHHHHHHHHHTTSCCCCC
T ss_pred             -----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence                 56777   788888889999999999999999999999999999999988753

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=2.1e-49  Score=412.66  Aligned_cols=252  Identities=22%  Similarity=0.286  Sum_probs=210.5

Q ss_pred             CCCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc--
Q 004891            2 AAPRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD--   78 (725)
Q Consensus         2 ~~~~i~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~--   78 (725)
                      +++.+.++. +++|++|||||| +.|+||.+|+++|.+++++++.|+++ +|||||.|++||+|+|++++........  
T Consensus        24 ~~~~i~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~v-~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~  101 (280)
T 2f6q_A           24 GFETLVVTS-EDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPGGVEE  101 (280)
T ss_dssp             ECSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCTTHHHH
T ss_pred             CCCeEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCE-EEEEeCCCCCcccCCCHHHHhhcCcchhhH
Confidence            467788998 789999999999 58999999999999999999999999 9999999999999999998864321110  


Q ss_pred             -ccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHH
Q 004891           79 -VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (725)
Q Consensus        79 -~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~  157 (725)
                       ...+.....+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus       102 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~  180 (280)
T 2f6q_A          102 KAKNNAVLLREFV-GCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPA  180 (280)
T ss_dssp             HHHHHHHHHHHHH-HHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHH-HHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEECCCcEEECchHhhCCCCcccHHHHHHHHhCHH
Confidence             001112334555 669999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 004891          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (725)
Q Consensus       158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (725)
                      +|++|++||++++|+||+++||||+|||++++.+++.++|++++..++.++                             
T Consensus       181 ~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~-----------------------------  231 (280)
T 2f6q_A          181 KATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNAL-----------------------------  231 (280)
T ss_dssp             HHHHHHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHHHHHHHTTSCHHHH-----------------------------
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCcceEECHHHHHHHHHHHHHHHHhCCHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999999876432                             


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhh
Q 004891          238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT  292 (725)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~  292 (725)
                             ..+|+.++.....+++++++.|.+.+..++.|+|+++++++|++||+|
T Consensus       232 -------~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekR~p  279 (280)
T 2f6q_A          232 -------RISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTNAVVNFLSRKSK  279 (280)
T ss_dssp             -------HHHHHHHHGGGHHHHHHHHHHHHHHHHHHHTSHHHHC-----------
T ss_pred             -------HHHHHHHHhhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCC
Confidence                   245677777777778999999999999999999999999999999876

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=2.7e-49  Score=408.60  Aligned_cols=250  Identities=25%  Similarity=0.380  Sum_probs=217.8

Q ss_pred             CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccc
Q 004891            2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (725)
Q Consensus         2 ~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~   80 (725)
                      +++.|.++. +++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++..........
T Consensus        13 ~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   91 (265)
T 3qxi_A           13 TEPEVLVEQ-RDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAGGSFCAGMDLKAFARGENVVVEG   91 (265)
T ss_dssp             --CCEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCCCSBC-------CCCEETT
T ss_pred             CCCeEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeeCCCChhhhhccchhhhhh
Confidence            357799999 7999999999995 79999999999999999999999999999999999999999999986533211111


Q ss_pred             ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHH
Q 004891           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (725)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~  160 (725)
                         ... . + ..+.. ||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|+
T Consensus        92 ---~~~-~-~-~~~~~-~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~  164 (265)
T 3qxi_A           92 ---RGL-G-F-TERPP-AKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIPYAIAM  164 (265)
T ss_dssp             ---TEE-T-T-TTSCC-SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHSCHHHHH
T ss_pred             ---hhh-h-H-HHhhC-CCCEEEEECCceeHHHHHHHHhCCEEEEcCCCEEECcccccCcCCcccHHHHHHHHhCHHHHH
Confidence               111 1 2 22444 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCC
Q 004891          161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  240 (725)
Q Consensus       161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (725)
                      +|+++|++++|+||+++||||+|||++++.+++.++|+++++.+|.++                                
T Consensus       165 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~--------------------------------  212 (265)
T 3qxi_A          165 ELALTGDNLSAERAHALGMVNVLAEPGAALDAAIALAEKITANGPLAV--------------------------------  212 (265)
T ss_dssp             HHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHTSCHHHH--------------------------------
T ss_pred             HHHHcCCCcCHHHHHHCCCccEeeChhHHHHHHHHHHHHHHcCCHHHH--------------------------------
Confidence            999999999999999999999999999999999999999999887533                                


Q ss_pred             ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCC
Q 004891          241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (725)
Q Consensus       241 ~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  295 (725)
                          ..+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|.+.
T Consensus       213 ----~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  263 (265)
T 3qxi_A          213 ----AATKRIITESRGWSLDTRFAQQMKILFPIFTSNDAKEGAIAFAEKRPPRWT  263 (265)
T ss_dssp             ----HHHHHHHHHHTTCCTTTHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCCC
T ss_pred             ----HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence                356788888888999999999999999999999999999999999988754

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=100.00  E-value=1e-49  Score=411.18  Aligned_cols=249  Identities=21%  Similarity=0.305  Sum_probs=212.9

Q ss_pred             EEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC-CCCCcCCCCchhhhhccCCCcccccchh
Q 004891            7 TMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDVSLMPDV   85 (725)
Q Consensus         7 ~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   85 (725)
                      .++. +++|++||||||+.|+||.+|+++|.+++++++.|+++|+|||||. |++||+|+|++++.... ......+...
T Consensus         8 ~~~~-~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~-~~~~~~~~~~   85 (260)
T 1sg4_A            8 EPDA-GAGVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRS-PAHYAGYWKA   85 (260)
T ss_dssp             EEET-TTTEEEEEECCTTTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCC-HHHHHHHHHH
T ss_pred             EEEe-cCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhccC-HHHHHHHHHH
Confidence            3444 6899999999998899999999999999999999999999999999 79999999999885421 1111122233


Q ss_pred             HHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEee--CCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHH
Q 004891           86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM  163 (725)
Q Consensus        86 ~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~--~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~  163 (725)
                      .+.++ +.|.++||||||+|||+|+|||++|+++||+|||+  ++++|++||+++|++|++|++++|++++|..+|++|+
T Consensus        86 ~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~ll  164 (260)
T 1sg4_A           86 VQELW-LRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERAL  164 (260)
T ss_dssp             HHHHH-HHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHH-HHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEEecCCCCEEeCchhhhCCCCchhHHHHHHHHhCHHHHHHHH
Confidence            44556 67999999999999999999999999999999999  8999999999999999999999999999999999999


Q ss_pred             HcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChh
Q 004891          164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ  243 (725)
Q Consensus       164 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  243 (725)
                      ++|++++|+||+++||||+|+|++++.+++.++|++++..|+.+++                                  
T Consensus       165 ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------------  210 (260)
T 1sg4_A          165 QLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAIPDHARQ----------------------------------  210 (260)
T ss_dssp             HHTCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH----------------------------------
T ss_pred             HcCCcCCHHHHHHcCCCCEecCHHHHHHHHHHHHHHHHhCCHHHHH----------------------------------
Confidence            9999999999999999999999999999999999999998864332                                  


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          244 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                        .+|++++.....+++++++.|.+.+..++.|+|+++++++|++||+++|
T Consensus       211 --~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~~~~  259 (260)
T 1sg4_A          211 --LTKAMMRKATASRLVTQRDADVQNFVSFISKDSIQKSLQMYLERLKEEK  259 (260)
T ss_dssp             --HHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSHHHHHHHTC---------
T ss_pred             --HHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcccC
Confidence              4567777776677888899999999999999999999999999999876

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=100.00  E-value=7.9e-49  Score=407.13  Aligned_cols=252  Identities=26%  Similarity=0.336  Sum_probs=217.9

Q ss_pred             CCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-CCcCCCCchhhhhccCCCccc
Q 004891            3 APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVFQKVHGAGDVS   80 (725)
Q Consensus         3 ~~~i~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~-~F~aG~Dl~~~~~~~~~~~~~   80 (725)
                      |+.|.++. +++|++|||||| +.|+||.+|+++|.+++++++.|+++|+|||||.|+ +||+|+|++++..... ....
T Consensus        12 ~~~i~~~~-~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~-~~~~   89 (273)
T 2uzf_A           12 YDEIKYEF-YEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGY-VGED   89 (273)
T ss_dssp             CSSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSEEEECCCCCC---------CCS
T ss_pred             CceEEEEE-ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCceecCcCcHhhhcccc-chhh
Confidence            45688888 789999999999 589999999999999999999999999999999998 9999999998854211 1111


Q ss_pred             cc-chhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891           81 LM-PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (725)
Q Consensus        81 ~~-~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  159 (725)
                      .+ ......++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|
T Consensus        90 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A  168 (273)
T 2uzf_A           90 QIPRLNVLDLQ-RLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKA  168 (273)
T ss_dssp             SSCCCTHHHHH-HHHHHSSSCEEEEECEEEETHHHHHHHHSSEEEEETTCEEECCGGGTTCCCCSTTTHHHHHHHCHHHH
T ss_pred             hHHHhhHHHHH-HHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEEcCCCEEECchhhhCCCCchhHHHHHHHHhCHHHH
Confidence            11 11133555 66899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (725)
Q Consensus       160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (725)
                      ++|+++|++++|+||+++||||+|||++++.+++.++|+++++.++.+++                              
T Consensus       169 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------  218 (273)
T 2uzf_A          169 REIWYLCRQYNAQEALDMGLVNTVVPLEKVEDETVQWCKEIMKHSPTALR------------------------------  218 (273)
T ss_dssp             HHHHHTCCCEEHHHHHHHTSSSEEECGGGSHHHHHHHHHHHTTSCHHHHH------------------------------
T ss_pred             HHHHHhCCCCCHHHHHHcCCCccccCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998874332                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHH-HHHHHHhCCHhHHHHHHHHHhhhhhcCC
Q 004891          240 NMPQHQACLDVIEEGIVHGGYSGVLKEA-KVFKELVMLDTSRGLVHVFFAQRATSKV  295 (725)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~-~~~~~~~~s~~~~~~i~aF~~~r~~~~~  295 (725)
                            .+|++++  ...+++++++.|. +.+..++.|+|+++++++|++||+|...
T Consensus       219 ------~~K~~l~--~~~~~~~~l~~e~~~~~~~~~~s~d~~egi~af~ekr~p~f~  267 (273)
T 2uzf_A          219 ------FLKAAMN--ADTDGLAGLQQMAGDATLLYYTTDEAKEGRDAFKEKRDPDFD  267 (273)
T ss_dssp             ------HHHHHHH--HHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCS
T ss_pred             ------HHHHHHH--ccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcCCCCCC
Confidence                  3455665  2356889999999 9999999999999999999999988753

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=100.00  E-value=1e-49  Score=413.33  Aligned_cols=253  Identities=22%  Similarity=0.264  Sum_probs=216.4

Q ss_pred             CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCC-cccc
Q 004891            3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-DVSL   81 (725)
Q Consensus         3 ~~~i~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~-~~~~   81 (725)
                      +++|.++.++++|++||||||+.|+||.+|+++|.++++.+++|+++|+|||||.|++||+|+|++++....... ....
T Consensus        12 ~~~v~~~~~~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   91 (272)
T 3qk8_A           12 FPSLRFEPGEHGVLNLVLDSPGLNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDETIGDYEGRIR   91 (272)
T ss_dssp             CTTEEEEECSTTEEEEEECCHHHHEECHHHHHHHHHHHHHHHHCTTCSEEEEEESSSCSBCEECHHHHHHHHHCHHHHHH
T ss_pred             CCeEEEEEeCCCEEEEEECCCCcCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCeeCCcCHHHHhccccchHHHHH
Confidence            578999994458999999999999999999999999999999999999999999999999999999986532111 1112


Q ss_pred             cchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHH
Q 004891           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE  161 (725)
Q Consensus        82 ~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~  161 (725)
                      +....++++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++
T Consensus        92 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~  170 (272)
T 3qk8_A           92 IMREARDLV-LNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHTKLGVAAGDHAAICWPLLVGMAKAKY  170 (272)
T ss_dssp             HHHHHHHHH-HHHHTCCSCEEEEECSEEEHHHHHHHHHSSEEEEETTCEEECCHHHHTSCSCSSHHHHTHHHHCHHHHHH
T ss_pred             HHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHHHHH
Confidence            223344566 6799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCC
Q 004891          162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  241 (725)
Q Consensus       162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (725)
                      |++||++++|+||+++||||+|||++++.+++.++|++|+..++.+++                                
T Consensus       171 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------------  218 (272)
T 3qk8_A          171 YLLTCETLSGEEAERIGLVSTCVDDDEVLPTATRLAENLAQGAQNAIR--------------------------------  218 (272)
T ss_dssp             HHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH--------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCCcEeeCHhHHHHHHHHHHHHHHcCCHHHHH--------------------------------
Confidence            999999999999999999999999999999999999999999875443                                


Q ss_pred             hhHHHHHHHHHHhhc---CCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCCC
Q 004891          242 PQHQACLDVIEEGIV---HGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (725)
Q Consensus       242 ~a~~~~~~~~~~~~~---~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  296 (725)
                          .+|++++....   .+++..++.|    ..++.|+|++|++++|++||+|....
T Consensus       219 ----~~K~~l~~~~~~~~~~~~~~~~~e----~~~~~s~d~~eg~~Af~ekR~p~f~g  268 (272)
T 3qk8_A          219 ----WTKRSLNHWYRMFGPTFETSLGLE----FLGFTGPDVQEGLAAHRQKRPARFTD  268 (272)
T ss_dssp             ----HHHHHHHHHHHHTHHHHHHHHHHH----HHHTTSSHHHHHHHHHHTTSCCCC--
T ss_pred             ----HHHHHHHHHHhhcchhHHHHHHHH----HHHhCCHHHHHHHHHHHcCCCCCCCC
Confidence                34455544332   3344555544    47899999999999999999987543

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=100.00  E-value=4e-49  Score=410.02  Aligned_cols=251  Identities=19%  Similarity=0.293  Sum_probs=205.6

Q ss_pred             CCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccC--CCc-
Q 004891            3 APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG--AGD-   78 (725)
Q Consensus         3 ~~~i~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~--~~~-   78 (725)
                      ++.+.++. +++|++|||||| +.|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.....  ... 
T Consensus         8 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~   86 (276)
T 2j5i_A            8 WKTVKVEI-EDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFREVDAGPEIL   86 (276)
T ss_dssp             CSSEEEEE-ETEEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTEEEEEEEESTTCSBCCBCHHHHHHHHHHSCTTH
T ss_pred             CceEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCcCCcChhhHhhccccchhHH
Confidence            56788988 789999999999 5899999999999999999999999999999999999999999998753211  110 


Q ss_pred             ccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHH
Q 004891           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (725)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~  158 (725)
                      ...+.......+...|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+
T Consensus        87 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~  166 (276)
T 2j5i_A           87 QEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQ  166 (276)
T ss_dssp             HHHHHHHHHHHHTTTTTTCSSCEEEEECSCEEGGGHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHH
Confidence            01111111222125588999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 004891          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (725)
Q Consensus       159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (725)
                      |++|++||++++|+||+++||||+|||++++.+++.++|+++++.||.+++                             
T Consensus       167 A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~-----------------------------  217 (276)
T 2j5i_A          167 SLMYIMTGKTFGGQKAAEMGLVNESVPLAQLREVTIELARNLLEKNPVVLR-----------------------------  217 (276)
T ss_dssp             HHHHHHHCCEEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSCHHHHH-----------------------------
T ss_pred             HHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999998875433                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH--hCCH-hHHHHHHHHHhhh
Q 004891          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKEL--VMLD-TSRGLVHVFFAQR  290 (725)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~--~~s~-~~~~~i~aF~~~r  290 (725)
                             .+|++++.....+++++++.|.+.+..+  +.|+ |++|++++|++||
T Consensus       218 -------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~~d~~eg~~AF~ekr  265 (276)
T 2j5i_A          218 -------AAKHGFKRCRELTWEQNEDYLYAKLDQSRLLDTEGGREQGMKQFLDDK  265 (276)
T ss_dssp             -------HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHC----------------
T ss_pred             -------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcc
Confidence                   5678888888889999999998887766  6799 9999999999998

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=100.00  E-value=3e-49  Score=409.94  Aligned_cols=247  Identities=21%  Similarity=0.280  Sum_probs=222.5

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCC-cccc
Q 004891            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-DVSL   81 (725)
Q Consensus         4 ~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~-~~~~   81 (725)
                      +.|.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++....... ....
T Consensus        28 ~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~  106 (276)
T 3rrv_A           28 TEIDVRA-DGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYLKELSADADLRAK  106 (276)
T ss_dssp             TTEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHHCHHHHHH
T ss_pred             CeEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCcccCCcCHHHHhhcccchHHHHH
Confidence            4688888 7899999999996 89999999999999999999999999999999999999999999986532111 1112


Q ss_pred             cchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHH
Q 004891           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE  161 (725)
Q Consensus        82 ~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~  161 (725)
                      +......++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++
T Consensus       107 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~e  185 (276)
T 3rrv_A          107 TIRDGREIV-LGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAADGGPLTWPLHISLLLAKE  185 (276)
T ss_dssp             HHHHHHHHH-HHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCCSSHHHHGGGTSCHHHHHH
T ss_pred             HHHHHHHHH-HHHHhCCCCEEEEECceeeHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCccHHHHHHHHhCHHHHHH
Confidence            233344566 6799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCC
Q 004891          162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  241 (725)
Q Consensus       162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (725)
                      |+++|++++|+||+++||||+||  +++.+++.++|+++++.|+.+++                                
T Consensus       186 llltG~~i~A~eA~~~GLv~~vv--~~l~~~a~~~A~~la~~~~~a~~--------------------------------  231 (276)
T 3rrv_A          186 YALTGTRISAQRAVELGLANHVA--DDPVAEAIACAKKILELPQQAVE--------------------------------  231 (276)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEE--SSHHHHHHHHHHHHHHSCHHHHH--------------------------------
T ss_pred             HHHcCCCCCHHHHHHcCCHHHHH--HHHHHHHHHHHHHHHcCCHHHHH--------------------------------
Confidence            99999999999999999999999  89999999999999999875433                                


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhh
Q 004891          242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQR  290 (725)
Q Consensus       242 ~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r  290 (725)
                          .+|++++.....+++++++.|...+..++.|+|++|++++|++||
T Consensus       232 ----~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR  276 (276)
T 3rrv_A          232 ----STKRVLNIHLERAVLASLDYALSAESQSFVTEDFRSIVTKLADKN  276 (276)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHCCC
T ss_pred             ----HHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence                567788877777899999999999999999999999999999986

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=100.00  E-value=5.9e-49  Score=410.14  Aligned_cols=258  Identities=24%  Similarity=0.342  Sum_probs=216.9

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCC-C
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGA-G   77 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~-~   77 (725)
                      |++++|.++.+.++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.| ++||+|+|++++...... .
T Consensus        24 ~~~~~v~~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~  103 (289)
T 3t89_A           24 EGFEDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKD  103 (289)
T ss_dssp             TTCSSEEEEEETTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCCC----------
T ss_pred             CCCCeEEEEEecCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCCccCCCChhhhhccccchh
Confidence            457789999932899999999995 7999999999999999999999999999999999 499999999988542211 1


Q ss_pred             cccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHH
Q 004891           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (725)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~  157 (725)
                      ...........++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++++|++++|..
T Consensus       104 ~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~~~g~~~L~r~vG~~  182 (289)
T 3t89_A          104 DSGVHHLNVLDFQ-RQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQK  182 (289)
T ss_dssp             ------CTHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHCHH
T ss_pred             hhHHHHHHHHHHH-HHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEeCCCEEeccccccCCCCCchHHHHHHHhcCHH
Confidence            1111112244556 679999999999999999999999999999999999999999999999888888899999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 004891          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (725)
Q Consensus       158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (725)
                      +|++|+++|++++|+||+++||||+|||++++.+++.++|++|+..++.+++                            
T Consensus       183 ~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~la~~~~~a~~----------------------------  234 (289)
T 3t89_A          183 KAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALR----------------------------  234 (289)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH----------------------------
T ss_pred             HHHHHHHcCCcccHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHcCCHHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999998875433                            


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCCC
Q 004891          238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (725)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  296 (725)
                              .+|++++.... ......+.|.+.+..++.|+|++|++++|++||+|...+
T Consensus       235 --------~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekR~P~f~~  284 (289)
T 3t89_A          235 --------CLKAALNADCD-GQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPDFSK  284 (289)
T ss_dssp             --------HHHHHHHHTTS-HHHHHHHHHHHHHHHHTTSSTTTHHHHHHHTTSCCCCTT
T ss_pred             --------HHHHHHHhhcc-cchHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCCC
Confidence                    45667766543 233444577888889999999999999999999988544

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=100.00  E-value=1.3e-49  Score=409.98  Aligned_cols=247  Identities=24%  Similarity=0.312  Sum_probs=192.8

Q ss_pred             CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccc
Q 004891            2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (725)
Q Consensus         2 ~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~   80 (725)
                      +++.|.++. +++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|+.||+|+|++++....... ..
T Consensus        10 ~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~~   87 (258)
T 3lao_A           10 GPGRVTREQ-RGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHGEHFTAGLDLMELAPKLAAS-GF   87 (258)
T ss_dssp             SSCCEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHGGGCBTT-BC
T ss_pred             CCCeEEEEE-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCeecCcCHHHHhhccchh-hH
Confidence            356799999 7899999999995 79999999999999999999999999999999999999999999987643222 11


Q ss_pred             ccchhHHHHHHHHH-hhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHH
Q 004891           81 LMPDVSVELVVNLI-EDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (725)
Q Consensus        81 ~~~~~~~~~~~~~l-~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  159 (725)
                      .+.....+.+ ..+ .++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus        88 ~~~~~~~~~~-~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A  166 (258)
T 3lao_A           88 RYPDGGVDPW-GVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPRAAGWTDA  166 (258)
T ss_dssp             CCCTTCCCTT-SCSSSCCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGTCCCSSCCCCSHHHHHHCHHHH
T ss_pred             HHHHHHHHHH-HHHHHhCCCCEEEEECCEeEhHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHHHH
Confidence            2222222344 558 89999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (725)
Q Consensus       160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (725)
                      ++|+++|++++|+||+++||||+|||++++.+++.++|+++++.||.++                               
T Consensus       167 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~-------------------------------  215 (258)
T 3lao_A          167 MRYILTGDEFDADEALRMRLLTEVVEPGEELARALEYAERIARAAPLAV-------------------------------  215 (258)
T ss_dssp             HHHHTTCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHHH-------------------------------
T ss_pred             HHHHHcCCCCCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999887533                               


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 004891          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF  287 (725)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~  287 (725)
                           ..+|++++.....+++++++.|.+.+..++.|+|++|++++|+
T Consensus       216 -----~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~  258 (258)
T 3lao_A          216 -----RAALQSAFQGRDEGDDAALSRVNESLAALIGSEDVREGVLAMV  258 (258)
T ss_dssp             -----HHHHHHHHHHTC-------------------------------
T ss_pred             -----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHhhC
Confidence                 3568889988888999999999999999999999999999995

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=100.00  E-value=7.6e-49  Score=406.48  Aligned_cols=252  Identities=22%  Similarity=0.323  Sum_probs=219.0

Q ss_pred             CCCCcEEEE----EecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccC
Q 004891            1 MAAPRVTME----VGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG   75 (725)
Q Consensus         1 M~~~~i~~~----~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~   75 (725)
                      |+ +.+.++    . +++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.....
T Consensus         5 m~-~~v~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~   82 (267)
T 3oc7_A            5 MD-ALVDYAGPAAT-GGPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSGGS   82 (267)
T ss_dssp             CC-SSEEEECHHHH-SSSEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSEEECCBC---------
T ss_pred             cc-cccCCCCccce-eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCceeCCcCchhhhhccC
Confidence            45 567888    6 7899999999995 799999999999999999999999999999999999999999999862111


Q ss_pred             CCcc----cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHh
Q 004891           76 AGDV----SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLP  151 (725)
Q Consensus        76 ~~~~----~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~  151 (725)
                      ....    ..+.....+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~  161 (267)
T 3oc7_A           83 PSSAYDMAVERAREMAALM-RAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPAIISLTLLP  161 (267)
T ss_dssp             --CHHHHHHHHHHHHHHHH-HHHHHCSSCEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTTHHHHTT
T ss_pred             chhhhhhHHHHHHHHHHHH-HHHHhCCCCEEEEEcCeecccchHHHHHCCEEEEcCCCEEeCcccccCCCcchhHHHHHH
Confidence            1111    01233445566 679999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHH
Q 004891          152 RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLAR  231 (725)
Q Consensus       152 r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (725)
                       ++|..+|++|+++|++++|+||+++||||+|  ++++.+++.++++++++.|+.+++                      
T Consensus       162 -~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~v--~~~l~~~a~~~a~~la~~~~~a~~----------------------  216 (267)
T 3oc7_A          162 -KLSARAAARYYLTGEKFDARRAEEIGLITMA--AEDLDAAIDQLVTDVGRGSPQGLA----------------------  216 (267)
T ss_dssp             -TSCHHHHHHHHHHCCCBCHHHHHHHTSSSEE--CSSHHHHHHHHHHHHHTSCHHHHH----------------------
T ss_pred             -HhCHHHHHHHHHcCCccCHHHHHHCCChhhh--hHHHHHHHHHHHHHHHhCCHHHHH----------------------
Confidence             9999999999999999999999999999999  788999999999999998875433                      


Q ss_pred             HHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          232 LQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       232 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                                    .+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|.+
T Consensus       217 --------------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f  265 (267)
T 3oc7_A          217 --------------ASKALTTAAVLERFDRDAERLAEESARLFVSDEAREGMLAFLEKRSPNW  265 (267)
T ss_dssp             --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTCCCTT
T ss_pred             --------------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCC
Confidence                          5677888888888999999999999999999999999999999998875

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=3e-49  Score=412.71  Aligned_cols=256  Identities=21%  Similarity=0.289  Sum_probs=218.3

Q ss_pred             CCCcEEEEEecCcEEEEEeC-CC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCC--
Q 004891            2 AAPRVTMEVGNDGVAIITLI-NP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG--   77 (725)
Q Consensus         2 ~~~~i~~~~~~~~v~~i~l~-~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~--   77 (725)
                      +|+.|.++. +++|++|||| || +.|+||.+|+++|.+++++++.|+. |+|||||.|++||+|+|++++.......  
T Consensus        21 ~~~~v~~~~-~~~v~~itln~rp~~~Nal~~~m~~~L~~al~~~~~d~~-r~vVltg~G~~FcaG~Dl~~~~~~~~~~~~   98 (291)
T 2fbm_A           21 TYRDIVVKK-EDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDS-KLVLFSAAGSVFCCGLDFGYFVKHLRNNRN   98 (291)
T ss_dssp             CCSSEEEEE-CSSEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHSSC-SEEEEEECSSCSBCCBCHHHHHHHHHHCHH
T ss_pred             CcceEEEEE-eCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCC-eEEEEECCCCCccCCcCHHHHHhcccccch
Confidence            467789998 7899999999 68 5799999999999999999998875 9999999999999999999985421100  


Q ss_pred             -cccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCH
Q 004891           78 -DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL  156 (725)
Q Consensus        78 -~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~  156 (725)
                       ....+.....+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus        99 ~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~  177 (291)
T 2fbm_A           99 TASLEMVDTIKNFV-NTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGK  177 (291)
T ss_dssp             HHHHHHHHHHHHHH-HHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCH
T ss_pred             hHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEECcHHhcCCCCcccHHHHHHHHHhH
Confidence             0111222344556 66899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHH
Q 004891          157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK  236 (725)
Q Consensus       157 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (725)
                      .+|++|++||++++|+||+++||||+|||++++.+++.++|+++++.||.++                            
T Consensus       178 ~~A~el~ltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~----------------------------  229 (291)
T 2fbm_A          178 ASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNPIVL----------------------------  229 (291)
T ss_dssp             HHHHHHHTSCCEEEHHHHHHTTSCSEEECSTTSHHHHHHHHHHHTTSCHHHH----------------------------
T ss_pred             HHHHHHHHcCCccCHHHHHHCCCcceecChhHHHHHHHHHHHHHHhCCHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999999887533                            


Q ss_pred             hCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHH-HhhhhhcCCC
Q 004891          237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVF-FAQRATSKVP  296 (725)
Q Consensus       237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF-~~~r~~~~~~  296 (725)
                              ..+|++++.....+++++++.|.+.+..++.|+|++|++.+| ++||+|....
T Consensus       230 --------~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~Af~~ekR~P~f~~  282 (291)
T 2fbm_A          230 --------EECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKIPLLGYKAAFPP  282 (291)
T ss_dssp             --------HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTC-----------
T ss_pred             --------HHHHHHHHhhhccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCCC
Confidence                    256778887777788999999999999999999999999999 9999987543

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=100.00  E-value=3.6e-49  Score=405.17  Aligned_cols=247  Identities=24%  Similarity=0.313  Sum_probs=201.0

Q ss_pred             EEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc-CCCCCcCCCCchhhhhccCCCcccccc
Q 004891            6 VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTG-NGGRFSGGFDINVFQKVHGAGDVSLMP   83 (725)
Q Consensus         6 i~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g-~g~~F~aG~Dl~~~~~~~~~~~~~~~~   83 (725)
                      |.++. +++|++|||||| +.|+||.+|+++|.++++.++.|+++|+||||| .|++||+|+|++++...........+.
T Consensus         2 v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~   80 (250)
T 2a7k_A            2 VFEEN-SDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWI   80 (250)
T ss_dssp             EEEEE-ETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHH
T ss_pred             eEEEe-eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCCccCCcCHHHHhhcCchhhHHHHH
Confidence            66777 789999999999 589999999999999999999999999999999 999999999999986532111001222


Q ss_pred             hhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHH
Q 004891           84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM  163 (725)
Q Consensus        84 ~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~  163 (725)
                      ....+++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ +|++++|..+|++|+
T Consensus        81 ~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~a~~l~  158 (250)
T 2a7k_A           81 DRVIDLY-QAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAA-ILGFTHGFSTMQEII  158 (250)
T ss_dssp             HHHHHHH-HHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHH-HHHHHHCHHHHHHHH
T ss_pred             HHHHHHH-HHHHcCCCCEEEEECCeEeHHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCcHHH-HHHHHhHHHHHHHHH
Confidence            2344556 67999999999999999999999999999999999999999999999999999999 999999999999999


Q ss_pred             HcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChh
Q 004891          164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ  243 (725)
Q Consensus       164 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  243 (725)
                      ++|++++|+||+++||||+|+|++++.+++.++++++++.||.++                                   
T Consensus       159 ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~-----------------------------------  203 (250)
T 2a7k_A          159 YQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASYPASAF-----------------------------------  203 (250)
T ss_dssp             HHCCCBCHHHHHHHTCCSEEECHHHHHHHHHHHHHHHHTSCHHHH-----------------------------------
T ss_pred             HcCCcccHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCCHHHH-----------------------------------
Confidence            999999999999999999999999999999999999999887433                                   


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhh
Q 004891          244 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA  291 (725)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~  291 (725)
                       ..+|++++.....+++++++.|.+.+..++.|+|+++++++|++||+
T Consensus       204 -~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~  250 (250)
T 2a7k_A          204 -INTKRAVNKPFIHLLEQTRDASKAVHKAAFQARDAQGHFKNVLGKKY  250 (250)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHCC--------------------
T ss_pred             -HHHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Confidence             24577777777778899999999999999999999999999999874

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=100.00  E-value=4.3e-49  Score=406.93  Aligned_cols=252  Identities=20%  Similarity=0.274  Sum_probs=223.5

Q ss_pred             CCcEEEEEecCcEEEEEeC-CC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCC---
Q 004891            3 APRVTMEVGNDGVAIITLI-NP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG---   77 (725)
Q Consensus         3 ~~~i~~~~~~~~v~~i~l~-~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~---   77 (725)
                      |++|.++. +++|++|||| || +.|+||.+|+++|.+++++++.|+ +|+|||||.|++||+|+|++++.......   
T Consensus         4 ~~~i~~~~-~~~v~~itln~rp~~~Nal~~~~~~~L~~al~~~~~d~-~r~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~   81 (261)
T 2gtr_A            4 YRDIVVRK-QDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADD-SKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKR   81 (261)
T ss_dssp             CSSEEEEE-ETTEEEEEECCSSSSTTEECHHHHHHHHHHHHHHHHSS-CSCEEEEESSSCSBCEECHHHHHHHHHHCHHH
T ss_pred             cceEEEEE-eCCEEEEEECCCCccCCCCCHHHHHHHHHHHHHHhcCC-CEEEEEecCCCccccccCchhhhhccccchhh
Confidence            56789998 7899999999 58 589999999999999999999887 49999999999999999999885421100   


Q ss_pred             cccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHH
Q 004891           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (725)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~  157 (725)
                      ....+......++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus        82 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~  160 (261)
T 2gtr_A           82 ESTKMAEAIRNFV-NTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGA  160 (261)
T ss_dssp             HHHHHHHHHHHHH-HHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCTTTTTCCCCTTHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHH-HHHHhCCCCEEEEECCeEeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCccchHHHHHHHHcCHH
Confidence            0111222344556 668999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 004891          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (725)
Q Consensus       158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (725)
                      +|++|++||++++|+||+++||||+|||++++.+++.++++++++.||.+++                            
T Consensus       161 ~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~----------------------------  212 (261)
T 2gtr_A          161 SANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELASCNPVVLE----------------------------  212 (261)
T ss_dssp             HHHHHHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH----------------------------
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCcccccChhHHHHHHHHHHHHHHhCCHHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999998875332                            


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhc
Q 004891          238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS  293 (725)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~  293 (725)
                              .+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|.
T Consensus       213 --------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~P~  260 (261)
T 2gtr_A          213 --------ESKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLKYLQRKIDE  260 (261)
T ss_dssp             --------HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHC
T ss_pred             --------HHHHHHHhccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCC
Confidence                    567788877777889999999999999999999999999999999886

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=100.00  E-value=1.1e-48  Score=403.45  Aligned_cols=253  Identities=33%  Similarity=0.431  Sum_probs=224.1

Q ss_pred             CCCcEEEEEe--cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc
Q 004891            2 AAPRVTMEVG--NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (725)
Q Consensus         2 ~~~~i~~~~~--~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~   78 (725)
                      +|+.+.++..  .++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++........
T Consensus         2 ~~~~~~~~~~v~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~   81 (260)
T 1mj3_A            2 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDC   81 (260)
T ss_dssp             CCSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCCHHHH
T ss_pred             CcccceeecccCcCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCccCCcChHhhhcccchHH
Confidence            4677777762  5689999999994 799999999999999999999999999999999999999999998753211000


Q ss_pred             ccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHH
Q 004891           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (725)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~  158 (725)
                         ........+ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+
T Consensus        82 ---~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~  157 (260)
T 1mj3_A           82 ---YSGKFLSHW-DHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSL  157 (260)
T ss_dssp             ---HHC--CCGG-GGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHHH
T ss_pred             ---HHHHHHHHH-HHHHhCCCCEEEEECCEEEeHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence               000011123 4588999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 004891          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (725)
Q Consensus       159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (725)
                      |++|+++|++++|+||+++||||+|||++++.+++.+++++++..++.++                              
T Consensus       158 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~------------------------------  207 (260)
T 1mj3_A          158 AMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIV------------------------------  207 (260)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHHHSCHHHH------------------------------
T ss_pred             HHHHHHcCCcCCHHHHHHcCCccEEeChHHHHHHHHHHHHHHHcCCHHHH------------------------------
Confidence            99999999999999999999999999999999999999999999887533                              


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                            ..+|++++.+...+++++++.|.+.+..++.|+|+++++++|++||+|..
T Consensus       208 ------~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~~kr~p~~  257 (260)
T 1mj3_A          208 ------AMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANF  257 (260)
T ss_dssp             ------HHHHHHHHGGGSSCHHHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCC
T ss_pred             ------HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCC
Confidence                  35688899888889999999999999999999999999999999988764

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=8.8e-49  Score=402.99  Aligned_cols=248  Identities=24%  Similarity=0.353  Sum_probs=220.6

Q ss_pred             EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhcc--CCCccccc
Q 004891            6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVH--GAGDVSLM   82 (725)
Q Consensus         6 i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~--~~~~~~~~   82 (725)
                      +.++  +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++....  ........
T Consensus         2 i~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   79 (253)
T 1uiy_A            2 VQVE--KGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRH   79 (253)
T ss_dssp             EEEE--CSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHH
T ss_pred             EEEE--eCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcChHHHHhcccCCchhHHHH
Confidence            4555  5789999999995 89999999999999999999999999999999999999999999886531  11100010


Q ss_pred             chhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHH
Q 004891           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM  162 (725)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l  162 (725)
                      ....+.++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++| +++|++++|..+|++|
T Consensus        80 ~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~a~~l  157 (253)
T 1uiy_A           80 SLSLMRLF-HRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALV-SVILVRAVGEKAAKDL  157 (253)
T ss_dssp             HHHHHHHH-HHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCHHH-HHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHH-HHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEcCCcEEeCcccccCcCCchH-HHHHHHHhCHHHHHHH
Confidence            01134556 669999999999999999999999999999999999999999999999999999 9999999999999999


Q ss_pred             HHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCCh
Q 004891          163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  242 (725)
Q Consensus       163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (725)
                      +++|++++|+||+++||||+|||++++.+++.++++++++.||.++                                  
T Consensus       158 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~----------------------------------  203 (253)
T 1uiy_A          158 LLTGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKNAPTSL----------------------------------  203 (253)
T ss_dssp             HHHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHHHSCHHHH----------------------------------
T ss_pred             HHhCCccCHHHHHHCCCcceecChhHHHHHHHHHHHHHHcCCHHHH----------------------------------
Confidence            9999999999999999999999999999999999999999886432                                  


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhc
Q 004891          243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS  293 (725)
Q Consensus       243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~  293 (725)
                        ..+|++++.+...+++++++.|.+.+..++.|+|+++++++|++||+|.
T Consensus       204 --~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~~kr~p~  252 (253)
T 1uiy_A          204 --RLTKELLLALPGMGLEDGFRLAALANAWVRETGDLAEGIRAFFEKRPPR  252 (253)
T ss_dssp             --HHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTTSCCC
T ss_pred             --HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCcCCCC
Confidence              3567888888889999999999999999999999999999999998765

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=100.00  E-value=1.5e-48  Score=407.06  Aligned_cols=248  Identities=21%  Similarity=0.286  Sum_probs=222.8

Q ss_pred             CCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCC-CcCCCCchhhhhccCCCc--
Q 004891            2 AAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVFQKVHGAGD--   78 (725)
Q Consensus         2 ~~~~i~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~-F~aG~Dl~~~~~~~~~~~--   78 (725)
                      +++.|.++. +++|++||||||+.|+||.+|+++|.++++.++.|+++|+|||||.|+. ||+|+|++++........  
T Consensus         6 ~~~~v~~~~-~~~Va~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~ff~~G~Dl~~~~~~~~~~~~~   84 (289)
T 3h0u_A            6 SYETIKARL-DGTVLSATFNAPPMNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAAKA   84 (289)
T ss_dssp             CCSSEEEEE-ETTEEEEEECCTTTCCBCHHHHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHHHTT
T ss_pred             CCCeEEEEE-ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCceeCCcCHHHHhhcCcchhhh
Confidence            368899999 7999999999999999999999999999999999999999999999965 566779999865321110  


Q ss_pred             ccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCC-ceEeCcccccCCCCCchhhchHhhhhCHH
Q 004891           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (725)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~-a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~  157 (725)
                      ...+.....+++ .+|.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|++++|..
T Consensus        85 ~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~  163 (289)
T 3h0u_A           85 GGPGDASLGMLF-RKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRLLGRG  163 (289)
T ss_dssp             SSTTCCSHHHHH-HHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECTHHHHTSCCCSSHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHH-HHHHhCCCCEEEEECCEeehhhHHHHHhCCEEEEeCCCcEEeCchhhcCCCCCccHHHHHHHHhCHH
Confidence            012334455666 6799999999999999999999999999999999998 99999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 004891          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (725)
Q Consensus       158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (725)
                      +|++|+++|++++|+||+++||||+|||++++.+++.++|++|++.||.++                             
T Consensus       164 ~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~a~-----------------------------  214 (289)
T 3h0u_A          164 RALEAVLTSSDFDADLAERYGWVNRAVPDAELDEFVAGIAARMSGFPRDAL-----------------------------  214 (289)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSCHHHH-----------------------------
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCccEecCHHHHHHHHHHHHHHHHhCCHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999999887533                             


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHh
Q 004891          238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFA  288 (725)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~  288 (725)
                             ..+|++++.... +++++++.|.+.+..++.|+|++|++++|++
T Consensus       215 -------~~~K~~l~~~~~-~l~~~l~~e~~~~~~~~~s~d~~egi~AFle  257 (289)
T 3h0u_A          215 -------IAAKSAINAISL-PAPAEVRADAALFQQLVRGEKVQQRTAELFK  257 (289)
T ss_dssp             -------HHHHHHHHHHHS-CCHHHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHhhcc-cHHHHHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence                   356788888877 8999999999999999999999999999999

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=100.00  E-value=5.7e-49  Score=416.45  Aligned_cols=256  Identities=24%  Similarity=0.268  Sum_probs=188.0

Q ss_pred             CCcEEEEEe-cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-------CCcCCCCchhhhhc
Q 004891            3 APRVTMEVG-NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-------RFSGGFDINVFQKV   73 (725)
Q Consensus         3 ~~~i~~~~~-~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~-------~F~aG~Dl~~~~~~   73 (725)
                      ++.|.++.+ +++|++||||||+ +|+||.+|+++|.++|+.++.|++||+|||||.|+       +||+|+|++++...
T Consensus        54 ~~~i~~~~~~~~gVa~ItlnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvVVltG~G~~~~~~~~~FcaG~Dl~~~~~~  133 (334)
T 3t8b_A           54 LTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRS  133 (334)
T ss_dssp             CSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCSCTTTTC--
T ss_pred             CceEEEEEeccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCcCCCCCcccCCCCHHHhhcc
Confidence            567999983 4899999999995 79999999999999999999999999999999996       89999999987532


Q ss_pred             cC----C------CcccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEee-CCceEeCcccccCCCC
Q 004891           74 HG----A------GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVIP  142 (725)
Q Consensus        74 ~~----~------~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~-~~a~~~~pe~~~Gl~p  142 (725)
                      ..    .      ............++ +.|.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~kPvIAaV~G~A~GgG~~LalacD~riAs~~~A~f~~pe~~lGl~p  212 (334)
T 3t8b_A          134 GYQYASGDTADTVDVARAGRLHILEVQ-RLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFD  212 (334)
T ss_dssp             --------------------CCHHHHH-HHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCCTTCSSSS
T ss_pred             cccccccccchhhhHHHHHHHHHHHHH-HHHHhCCCCEEEEECCccccCcchhHhhCCEEEEeCCCcEEECcccccCCCC
Confidence            11    0      00111112233555 67999999999999999999999999999999999 9999999999999999


Q ss_pred             CchhhchHhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHH
Q 004891          143 GFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSE  222 (725)
Q Consensus       143 ~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~  222 (725)
                      ++|++++|+|++|..+|++|++||++++|+||+++||||+|||++++.+++.++|++|++.+|.+++             
T Consensus       213 ~~gg~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~ia~~~p~a~~-------------  279 (334)
T 3t8b_A          213 GGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAKSPQAQR-------------  279 (334)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH-------------
T ss_pred             cccHHHHHHHHhhHHHHHHHHHhCCcCCHHHHHHCCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHH-------------
Confidence            9999999999999999999999999999999999999999999999999999999999999875433             


Q ss_pred             HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCCC
Q 004891          223 AREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (725)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  296 (725)
                                             .+|++++.... .+.+.+..|.+.+..++.|+|++|++.+|++||+|...+
T Consensus       280 -----------------------~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~s~d~~Eg~~AFleKR~P~f~~  329 (334)
T 3t8b_A          280 -----------------------MLKFAFNLLDD-GLVGQQLFAGEATRLAYMTDEAVEGRDAFLQKRPPDWSP  329 (334)
T ss_dssp             -----------------------HHHHHHHHTCC-CC-------------------------------------
T ss_pred             -----------------------HHHHHHHhhhc-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCC
Confidence                                   45677776644 455566778888899999999999999999999988543

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=100.00  E-value=1.4e-48  Score=402.97  Aligned_cols=251  Identities=24%  Similarity=0.323  Sum_probs=207.3

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccC--C-C
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG--A-G   77 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~--~-~   77 (725)
                      |+++.+.++..+++|++||||||+.|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.....  . .
T Consensus         3 ~~~~~~~~~~~~~~v~~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   82 (263)
T 3l3s_A            3 LSQDGLLGEVLSEGVLTLTLGRAPAHPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPDEG   82 (263)
T ss_dssp             -----CEEEEESSSEEEEEECSTTTCCCCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCSCSCCCCC-----CCS
T ss_pred             CCccceEEEEeeCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhcccccccc
Confidence            346677777768899999999995599999999999999999999999999999999999999999999865310  0 1


Q ss_pred             --cccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhC
Q 004891           78 --DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG  155 (725)
Q Consensus        78 --~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG  155 (725)
                        ....+......++ ++|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ ++|++++|+|++|
T Consensus        83 ~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~-~~g~~~~l~r~vG  160 (263)
T 3l3s_A           83 RAFVTDLFEACSALM-LDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLPGVQNGGF-CTTPAVAVSRVIG  160 (263)
T ss_dssp             HHHHHHHHHHHHHHH-HHHHTCSSCEEEEESSEEETHHHHHHHHSSEEEECTTCEEECCTTTTTSC-CHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEEEHHHHHHHHHCCEEEecCCCEEeCchhccCCC-CccHHHHHHHHcC
Confidence              1112233344556 67999999999999999999999999999999999999999999999999 5778999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHH
Q 004891          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK  235 (725)
Q Consensus       156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (725)
                      ..+|++|++||++++|+||+++||||+|||++++.+++.++|+++++.||.++                           
T Consensus       161 ~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~---------------------------  213 (263)
T 3l3s_A          161 RRAVTEMALTGATYDADWALAAGLINRILPEAALATHVADLAGALAARNQAPL---------------------------  213 (263)
T ss_dssp             HHHHHHHHHHCCEEEHHHHHHHTSSSEECCHHHHHHHHHHHHHHHHSSCHHHH---------------------------
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHHH---------------------------
Confidence            99999999999999999999999999999999999999999999999887533                           


Q ss_pred             HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhh
Q 004891          236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ  289 (725)
Q Consensus       236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~  289 (725)
                               ..+|++++.....+++++++.|.+.+..++.|+|++|++++|-+.
T Consensus       214 ---------~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Eg~~Af~~~  258 (263)
T 3l3s_A          214 ---------RRGLETLNRHLELPLEQAYALATPVMVEHFMDPGRRHLDWIDEGH  258 (263)
T ss_dssp             ---------HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHC--------------
T ss_pred             ---------HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcc
Confidence                     356888999999999999999999999999999999999999864

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=100.00  E-value=6.3e-49  Score=403.10  Aligned_cols=244  Identities=25%  Similarity=0.380  Sum_probs=201.1

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccc
Q 004891            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (725)
Q Consensus         3 ~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (725)
                      ++.+.++. +++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++...   .   .
T Consensus         8 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vvltg~g~~F~aG~Dl~~~~~~---~---~   80 (256)
T 3pe8_A            8 SPVLLVDT-TDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKELGDT---T---E   80 (256)
T ss_dssp             CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEESTTCSBCCBCTTTC-----------
T ss_pred             CCcEEEEE-ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhhh---H---H
Confidence            56789998 8999999999995 7999999999999999999999999999999999999999999988642   1   0


Q ss_pred             cchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHH
Q 004891           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE  161 (725)
Q Consensus        82 ~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~  161 (725)
                          ..... +.+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++
T Consensus        81 ----~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~  155 (256)
T 3pe8_A           81 ----LPDIS-PKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHARVGLMPTWGLSVRLPQKVGVGLARR  155 (256)
T ss_dssp             --------C-CCCCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSSHHHHHHHHHCHHHHHH
T ss_pred             ----HHHHH-HHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEcCCCEEECchhhhCCCCcccHHHHHHHhcCHHHHHH
Confidence                11222 4588999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCC
Q 004891          162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  241 (725)
Q Consensus       162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (725)
                      |+++|++++|+||+++||||+|||++++.+++.++|+++++.|+.+++                                
T Consensus       156 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------------  203 (256)
T 3pe8_A          156 MSLTGDYLSAQDALRAGLVTEVVAHDDLLTAARRVAASIVGNNQKAVR--------------------------------  203 (256)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSCEECGGGHHHHHHHHHHHHHTSCHHHHH--------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCCeEEeCHhHHHHHHHHHHHHHHcCCHHHHH--------------------------------
Confidence            999999999999999999999999999999999999999998875433                                


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH---hCCHhHHHHHHHHHhhhhhcC
Q 004891          242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKEL---VMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       242 ~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~---~~s~~~~~~i~aF~~~r~~~~  294 (725)
                          .+|++++.....+++++++.|.+.+..+   ..++|+++++.+|++|+++.+
T Consensus       204 ----~~K~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~e~~~aflek~k~~~  255 (256)
T 3pe8_A          204 ----ALLDSYHRIDALQTGGALWAEAEAARQWMRSTSGDDIAASRASVIERGRSQV  255 (256)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred             ----HHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCccC
Confidence                5678888888888999999999997654   677788999999999999864

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=100.00  E-value=3.4e-48  Score=398.41  Aligned_cols=242  Identities=26%  Similarity=0.354  Sum_probs=210.1

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccc
Q 004891            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (725)
Q Consensus         3 ~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (725)
                      ++.|.++. +++|++||||||+ .|+||.+|+++|.++++++++| ++|+|||||.|++||+|+|++...      ....
T Consensus        20 ~~~i~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~G~~FcaG~Dl~~~~------~~~~   91 (264)
T 3he2_A           20 GSMIGITQ-AEAVLTIELQRPERRNALNSQLVEELTQAIRKAGDG-SARAIVLTGQGTAFCAGADLSGDA------FAAD   91 (264)
T ss_dssp             --CEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHCC----CCSEEEEEESSSCSBCCBCCTTCT------TGGG
T ss_pred             CCeEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhC-CceEEEEECCCCCccCCcCCccch------hhHH
Confidence            45688888 7899999999995 8999999999999999999988 999999999999999999998321      1122


Q ss_pred             cchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHH
Q 004891           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE  161 (725)
Q Consensus        82 ~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~  161 (725)
                      +.....+++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++
T Consensus        92 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~  170 (264)
T 3he2_A           92 YPDRLIELH-KAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVGHGRARA  170 (264)
T ss_dssp             HHHHHHHHH-HHHHHCSSCEEEEECSCEETHHHHHHHHSSEEEECTTCEEECTHHHHTCCCCHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHH-HHHHhCCCCEEEEECCcEEcchhHHHHhCCEEEEcCCCEEECcccccCcCCcchHHHHHHHHhCHHHHHH
Confidence            233445566 6799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCC
Q 004891          162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  241 (725)
Q Consensus       162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (725)
                      |+++|++++|+||+++||||+|++    .+++.++|+++++.||.+++                                
T Consensus       171 llltG~~i~A~eA~~~GLV~~v~~----~~~a~~~A~~la~~~p~a~~--------------------------------  214 (264)
T 3he2_A          171 MLLSAEKLTAEIALHTGMANRIGT----LADAQAWAAEIARLAPLAIQ--------------------------------  214 (264)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEECC----HHHHHHHHHHHHTSCHHHHH--------------------------------
T ss_pred             HHHcCCCccHHHHHHCCCeEEEec----HHHHHHHHHHHHcCCHHHHH--------------------------------
Confidence            999999999999999999999996    46789999999998875433                                


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCC
Q 004891          242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (725)
Q Consensus       242 ~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  295 (725)
                          .+|++++..  .+++++++.|.+.+..++.|+|++|++.+|++||+|...
T Consensus       215 ----~~K~~l~~~--~~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekR~P~f~  262 (264)
T 3he2_A          215 ----HAKRVLNDD--GAIEEAWPAHKELFDKAWGSQDVIEAQVARMEKRPPKFQ  262 (264)
T ss_dssp             ----HHHHHHHTS--SCSCCCCHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred             ----HHHHHHHcc--CCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCC
Confidence                456777765  346677888999999999999999999999999998753

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=100.00  E-value=5.6e-48  Score=399.95  Aligned_cols=243  Identities=28%  Similarity=0.448  Sum_probs=216.1

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccc
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~   80 (725)
                      |+ +.|.++. +++|++||||||+.|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..... ....
T Consensus        22 m~-~~v~~~~-~~~Va~ItlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~-~~~~   98 (277)
T 4di1_A           22 MN-EFVSVVA-DQGLATLVVSRPPTNAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELRTLNA-PEAD   98 (277)
T ss_dssp             -C-CSEEEEE-ETTEEEEEECCTTTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSCSBCCBCHHHHHTCCH-HHHH
T ss_pred             CC-ceEEEEE-ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCEecCcCcccccccCh-HHHH
Confidence            45 5688998 7999999999995599999999999999999999999999999999999999999999875321 1122


Q ss_pred             ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHH
Q 004891           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (725)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~  160 (725)
                      .+.....+++ ++|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|+
T Consensus        99 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~  177 (277)
T 4di1_A           99 TAARVRLEAI-DAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPGGGGMGRLTRVVGSSRAK  177 (277)
T ss_dssp             HHHHHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEECCeEehhHHHHHHhCCEEEEcCCCEEECcccccCCCCCchHHHHHHHHhCHHHHH
Confidence            2333445566 679999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCC
Q 004891          161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  240 (725)
Q Consensus       161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (725)
                      +|+++|++++|+||+++||||+|||++++.+++.++|+++++.|+.++                                
T Consensus       178 ~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~--------------------------------  225 (277)
T 4di1_A          178 ELVFSGRFFDAEEALALGLIDDMVAPDDVYDSAVAWARRYLECPPRAL--------------------------------  225 (277)
T ss_dssp             HHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHTTTTSCHHHH--------------------------------
T ss_pred             HHHHcCCCCCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCCHHHH--------------------------------
Confidence            999999999999999999999999999999999999999999887533                                


Q ss_pred             ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhc
Q 004891          241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS  293 (725)
Q Consensus       241 ~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~  293 (725)
                          ..+|++++.....+++++++.|.+.+..++.|+          +||+|.
T Consensus       226 ----~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~----------ekR~P~  264 (277)
T 4di1_A          226 ----AAAKAVINDVFELEATERAAAERRRYVELFAAG----------QRGPDG  264 (277)
T ss_dssp             ----HHHHHHHHHTTTSCHHHHHHHHHHHHHHTTSGG----------GC----
T ss_pred             ----HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCc----------ccCCCc
Confidence                367889999999999999999999999999998          888877

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=100.00  E-value=6.8e-48  Score=399.89  Aligned_cols=253  Identities=26%  Similarity=0.410  Sum_probs=219.2

Q ss_pred             CcEEEEE---ecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCc
Q 004891            4 PRVTMEV---GNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD   78 (725)
Q Consensus         4 ~~i~~~~---~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~   78 (725)
                      ..+.++.   .+++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++..... ..
T Consensus         8 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~-~~   86 (272)
T 1hzd_A            8 DELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSS-SE   86 (272)
T ss_dssp             CSEEEEECCGGGTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCH-HH
T ss_pred             CcEEEEecccccCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCCCChhhhhccCh-HH
Confidence            3455543   25789999999995 8999999999999999999999999999999998 69999999998864211 11


Q ss_pred             ccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHH
Q 004891           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (725)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~  158 (725)
                      ...+.....+++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+
T Consensus        87 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~  165 (272)
T 1hzd_A           87 VGPFVSKIRAVI-NDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSL  165 (272)
T ss_dssp             HHHHHHHHHHHH-HHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHH-HHHHhCCCCEEEEeCceEEecHHHHHHhCCEEEEcCCCEEeCchhccCCCCCchHHHHHHHHhCHHH
Confidence            112223344556 6699999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCcchH----HHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHH
Q 004891          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEEL----LKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA  234 (725)
Q Consensus       159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l----~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (725)
                      |++|+++|++++|+||+++||||+|+|++++    .+.+.+++++++..+|.+                           
T Consensus       166 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~~~~~a~~~a~~la~~~p~a---------------------------  218 (272)
T 1hzd_A          166 AKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVA---------------------------  218 (272)
T ss_dssp             HHHHHHHTCEEEHHHHHHHTSCSEEECCCTTSCHHHHHHHHHHHTTTTSCHHH---------------------------
T ss_pred             HHHHHHcCCcCCHHHHHHCCCcceecChhhhhHHHHHHHHHHHHHHHhCCHHH---------------------------
Confidence            9999999999999999999999999998875    456777777777766532                           


Q ss_pred             HHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          235 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       235 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                               ...+|++++.+...+++++++.|.+.+..++.|+|+++++++|++||+|.+
T Consensus       219 ---------~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~~  269 (272)
T 1hzd_A          219 ---------MRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRY  269 (272)
T ss_dssp             ---------HHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTTSCCCC
T ss_pred             ---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCC
Confidence                     235678888888889999999999999999999999999999999998874

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}

Probab=100.00  E-value=5.5e-47  Score=407.91  Aligned_cols=290  Identities=23%  Similarity=0.319  Sum_probs=224.7

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCc--
Q 004891            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD--   78 (725)
Q Consensus         3 ~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~--   78 (725)
                      .+.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++........  
T Consensus         5 ~~~v~~~~-~~~v~~itLnrP~~~Nal~~~m~~~L~~al~~~~~d~~vr~vVltG~g~~~FcaG~Dl~~~~~~~~~~~~~   83 (363)
T 3bpt_A            5 AEEVLLGK-KGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKI   83 (363)
T ss_dssp             CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHHHHHHHHTSSCCC
T ss_pred             CcceEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCcccCCcCHHHHHhhcccccHH
Confidence            45688888 7899999999995 8999999999999999999999999999999998 89999999999864321111  


Q ss_pred             ccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHH
Q 004891           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (725)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~  158 (725)
                      ...+......++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. +
T Consensus        84 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~-~  161 (363)
T 3bpt_A           84 APVFFREEYMLN-NAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGK-L  161 (363)
T ss_dssp             HHHHHHHHHHHH-HHHHTCSSCEEEEECSEEETHHHHTTTTSSEEEECTTCEEECCGGGTTSCCCTTHHHHHHHSSTT-H
T ss_pred             HHHHHHHHHHHH-HHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCeEEeCCccccCCCCCchHHHHHHHhhHH-H
Confidence            111112223455 66999999999999999999999999999999999999999999999999999999999999997 9


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhc------------cCCC---------
Q 004891          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHR------------TDKL---------  217 (725)
Q Consensus       159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~------------~~~~---------  217 (725)
                      |++|++||++++|+||+++||||+|||++++.+.+..+++ +...++..+....+            ...+         
T Consensus       162 a~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~-l~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~  240 (363)
T 3bpt_A          162 GYFLALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDLLA-LKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINS  240 (363)
T ss_dssp             HHHHHHHCCCEETHHHHHTTSCSEECCGGGHHHHHHHHHH-CSSCCHHHHHHHHHHHHHHCCTTTTCCCTTGGGHHHHHH
T ss_pred             HHHHHHcCCCCCHHHHHHCCCcceecCHHHHHHHHHHHHh-cccCCHHHHHHHHHHHHhhhcccCCCchhhHHHHHHHHH
Confidence            9999999999999999999999999999998775544422 11111111100000            0000         


Q ss_pred             ----CChHHHHHHH-----HHHHHHHHHhCCCCh-hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 004891          218 ----GSLSEAREVL-----KLARLQAKKTAPNMP-QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF  287 (725)
Q Consensus       218 ----~~~~~~~~~~-----~~~~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~  287 (725)
                          .......+.+     ..+....++-..+.| +...+|++++.+...+++++++.|.+.+..++.|+|++|++++|+
T Consensus       241 ~f~~~~~~ei~~al~~~~~~~a~~~a~~la~~sP~al~~~k~~l~~~~~~~l~~~l~~E~~~~~~~~~s~D~~EGv~Afl  320 (363)
T 3bpt_A          241 CFSANTVEEIIENLQQDGSSFALEQLKVINKMSPTSLKITLRQLMEGSSKTLQEVLTMEYRLSQACMRGHDFHEGVRAVL  320 (363)
T ss_dssp             HTTSSSHHHHHHHHHHHCCHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSSHHHHHHHHHT
T ss_pred             HhCCCCHHHHHHHHhccChHHHHHHHHHHHhCCchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCccHHhhhhhee
Confidence                0000000011     111123344444555 567899999999999999999999999999999999999999999


Q ss_pred             -hh-hhhcCCC
Q 004891          288 -AQ-RATSKVP  296 (725)
Q Consensus       288 -~~-r~~~~~~  296 (725)
                       +| |+|++.+
T Consensus       321 ~eK~r~P~~~~  331 (363)
T 3bpt_A          321 IDKDQSPKWKP  331 (363)
T ss_dssp             TSCCCCCCCSS
T ss_pred             eCCCCCCCCCC
Confidence             77 7776543

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}

Probab=100.00  E-value=2.6e-47  Score=391.49  Aligned_cols=242  Identities=19%  Similarity=0.299  Sum_probs=204.3

Q ss_pred             cEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccc
Q 004891            5 RVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMP   83 (725)
Q Consensus         5 ~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~   83 (725)
                      .|.++. +++|++||||||+ .|+||.+|+++|.++++.+++ +++|+|||||.|++||+|+|++++....... .....
T Consensus         8 ~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~-~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~~~~~   84 (254)
T 3isa_A            8 PLAIER-RPAAWTFTLSRPEKRNALSAELVEALIDGVDAAHR-EQVPLLVFAGAGRNFSAGFDFTDYETQSEGD-LLLRM   84 (254)
T ss_dssp             SEEEEE-CSSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHH-TTCSEEEEEESTTCSCCCBCCTTCTTSCHHH-HHHHH
T ss_pred             eEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEECCCCceeeCcChHHhhccCchh-HHHHH
Confidence            388998 8999999999995 899999999999999999987 5899999999999999999999986432111 11111


Q ss_pred             hhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHH
Q 004891           84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM  163 (725)
Q Consensus        84 ~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~  163 (725)
                      ...+.++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|   ++++|++++|..+|++|+
T Consensus        85 ~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p---g~~~l~~~vG~~~A~~l~  160 (254)
T 3isa_A           85 VRIEMLL-QRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVL---GTRRFRDIVGADQALSIL  160 (254)
T ss_dssp             HHHHHHH-HHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCC---SHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHH-HHHHhCCCCEEEEECCeEeecchhHHHhCCEEEEcCCCEEECchhccCccH---HHHHHHHHcCHHHHHHHH
Confidence            2234555 679999999999999999999999999999999999999999999999998   479999999999999999


Q ss_pred             HcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChh
Q 004891          164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ  243 (725)
Q Consensus       164 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  243 (725)
                      ++|++++|+||+++||||+|||++++.+++.++++++++.++.+++                                  
T Consensus       161 ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------------  206 (254)
T 3isa_A          161 GSARAFDADEARRIGFVRDCAAQAQWPALIDAAAEAATALDPATRA----------------------------------  206 (254)
T ss_dssp             TTTCEEEHHHHHHTTSSSEECCGGGHHHHHHHHHHHHTTSCHHHHH----------------------------------
T ss_pred             HhCCCCcHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCCHHHHH----------------------------------
Confidence            9999999999999999999999999999999999999998875433                                  


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCCC
Q 004891          244 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (725)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  296 (725)
                        .+|+++.       ++.++.|.+.+..++.|+|+++++.+|++||+|.+.+
T Consensus       207 --~~K~~l~-------~~~~~~e~~~~~~~~~s~d~~egi~af~ekr~p~~~~  250 (254)
T 3isa_A          207 --TLHRVLR-------DDHDDADLAALARSAAQPGFKARIRDYLAQPAAEGHH  250 (254)
T ss_dssp             --HHHHHHS-------CCCHHHHHHHHHHHHHSTTHHHHHHHHHHC-------
T ss_pred             --HHHHHHh-------hhhHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC
Confidence              3344442       1234668888999999999999999999999999766

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=100.00  E-value=2.9e-47  Score=388.59  Aligned_cols=239  Identities=23%  Similarity=0.301  Sum_probs=213.8

Q ss_pred             cEE-EEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccccc
Q 004891            5 RVT-MEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (725)
Q Consensus         5 ~i~-~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (725)
                      .+. ++. +++|++|||||| +.|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++....... . ..
T Consensus         3 ~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~-~~   79 (243)
T 2q35_A            3 VVQLTEL-GNGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLIRKTRGE-V-EV   79 (243)
T ss_dssp             SEEEEEE-ETTEEEEEECCGGGTSBSCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECBSCHHHHHHHHTTC-C-CC
T ss_pred             eeEEEEe-eCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCCChHHHhhccchh-h-HH
Confidence            344 455 789999999999 589999999999999999999999999999999999999999999886432111 1 11


Q ss_pred             chhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHH
Q 004891           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM  162 (725)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l  162 (725)
                          .+++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|
T Consensus        80 ----~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l  154 (243)
T 2q35_A           80 ----LDLS-GLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFMKYGFTPVGATSLILREKLGSELAQEM  154 (243)
T ss_dssp             ----CCCH-HHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEESSSEEECCHHHHTSCCCSSHHHHHHHHHCHHHHHHH
T ss_pred             ----HHHH-HHHHhCCCCEEEEEcCccccchHHHHHhCCEEEEeCCCEEECCccccCCCCcchHHHHHHHHhCHHHHHHH
Confidence                2344 56889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCCh
Q 004891          163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  242 (725)
Q Consensus       163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (725)
                      +++|++++|+||+++||||+|+|++++.+++.++++++++.++.+++                                 
T Consensus       155 ~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------------------------  201 (243)
T 2q35_A          155 IYTGENYRGKELAERGIPFPVVSRQDVLNYAQQLGQKIAKSPRLSLV---------------------------------  201 (243)
T ss_dssp             HHHCCCEEHHHHHHTTCSSCEECHHHHHHHHHHHHHHHTTSCHHHHH---------------------------------
T ss_pred             HHcCCCCCHHHHHHcCCCCEecChhHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence            99999999999999999999999999999999999999998875332                                 


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 004891          243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF  287 (725)
Q Consensus       243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~  287 (725)
                         .+|+.++.....+++++++.|.+.+..++.|+|++|++++|+
T Consensus       202 ---~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~a~~  243 (243)
T 2q35_A          202 ---ALKQHLSADIKAKFPEAIKKELEIHQVTFNQPEIASRIQQEF  243 (243)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTHHHHHHTTC
T ss_pred             ---HHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHhhcC
Confidence               457777777777788999999999999999999999999875

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=100.00  E-value=1.1e-46  Score=392.75  Aligned_cols=244  Identities=18%  Similarity=0.188  Sum_probs=204.8

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc-
Q 004891            1 MAAPRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-   78 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~-   78 (725)
                      |+|+.+.++. +++|++|||||| +.|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++........ 
T Consensus         6 m~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~   84 (280)
T 1pjh_A            6 RQNEKISYRI-EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTN   84 (280)
T ss_dssp             CCBTTEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------
T ss_pred             ccCCceEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcCHHHHhhccccccc
Confidence            6677899999 789999999999 5899999999999999999999999999999999999999999998854211110 


Q ss_pred             --cc---ccc----hhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEee-CCceEeCcccccCCCCCchhhc
Q 004891           79 --VS---LMP----DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVIPGFGGTQ  148 (725)
Q Consensus        79 --~~---~~~----~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~-~~a~~~~pe~~~Gl~p~~g~~~  148 (725)
                        ..   .+.    .....++ ..|.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|++|+++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~~ia~~~~a~f~~pe~~lGl~p~~g~~~  163 (280)
T 1pjh_A           85 KYPSETSKWVSNFVARNVYVT-DAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTV  163 (280)
T ss_dssp             CCSSHHHHHHHHTHHHHHHHH-HHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHH
T ss_pred             chhhhHHHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeeeHHHHHHHHCCEEEEeCCCCEEeCchhhcCCCCCccHHH
Confidence              00   011    1123455 66899999999999999999999999999999999 9999999999999999999999


Q ss_pred             hHhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcc-----hHHHHHH-HHHHHHHhcCchhhhhhhccCCCCChHH
Q 004891          149 RLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE-----ELLKVSR-LWALDIAARRKPWIRSLHRTDKLGSLSE  222 (725)
Q Consensus       149 ~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~-----~l~~~a~-~~a~~la~~~~~~~~~~~~~~~~~~~~~  222 (725)
                      +|++++|..+|++|++||++++|+||+++||||+|||++     ++.+++. ++++++++.||.+++             
T Consensus       164 ~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~~~~~~l~~~a~~~~a~~la~~~~~a~~-------------  230 (280)
T 1pjh_A          164 SLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCL-------------  230 (280)
T ss_dssp             HHHHHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTTCHHHHHHHHHHHHHHHHTTCCHHHHH-------------
T ss_pred             HHHHHhCHHHHHHHHHhCCCCCHHHHHHCCCcceeeCCccccHHHHHHHHHHHHHHHHHcCCHHHHH-------------
Confidence            999999999999999999999999999999999999885     7888885 999999998875433             


Q ss_pred             HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          223 AREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                                             .+|++++....    ..++        ...++|+++++.+|+++|++..
T Consensus       231 -----------------------~~K~~l~~~~~----~~l~--------~~~~~d~~e~~~af~~kr~~e~  267 (280)
T 1pjh_A          231 -----------------------GMKKLLKSNHI----DAFN--------KANSVEVNESLKYWVDGEPLKR  267 (280)
T ss_dssp             -----------------------HHHHHHHTTTH----HHHH--------HHHHHHHHHHHHHHHHTHHHHH
T ss_pred             -----------------------HHHHHHHHhHH----HHHH--------HhhhHHHHHHHHHHhCCccHHH
Confidence                                   44566665432    2222        1257899999999999998843

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}

Probab=100.00  E-value=3.5e-47  Score=413.31  Aligned_cols=290  Identities=17%  Similarity=0.243  Sum_probs=222.7

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCC-----
Q 004891            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGA-----   76 (725)
Q Consensus         4 ~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~-----   76 (725)
                      +.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++......     
T Consensus        42 ~~v~~~~-~~~V~~ItLnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltG~G~~~FcaG~Dl~~~~~~~~~~~~~~  120 (407)
T 3ju1_A           42 QTLATAS-GKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQV  120 (407)
T ss_dssp             EEEECTT-SCEEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEESSSSEEECCBCCHHHHHHHHHHTSSC
T ss_pred             ceEEEEE-ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcccCCCChhhhhhccccccccc
Confidence            3456666 7899999999995 7999999999999999999999999999999999 799999999998643110     


Q ss_pred             -CcccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhC
Q 004891           77 -GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG  155 (725)
Q Consensus        77 -~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG  155 (725)
                       .....+......++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus       121 ~~~~~~~~~~~~~l~-~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~G~t~~L~rl~g  199 (407)
T 3ju1_A          121 TEVAKVFFEEEYRLD-YLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRMPG  199 (407)
T ss_dssp             CHHHHHHHHHHHHHH-HHHHTCSSCEEEECCSEEETHHHHHHHHCSEEEECTTCEEECGGGGGTCCSCTTHHHHTTTSST
T ss_pred             HHHHHHHHHHHHHHH-HHHHHCCCCEEEEECCccccCcchHHhcCCEEEEcCCCEEeChHhhcCCCCCchHHHHHhhhhH
Confidence             11112222233455 6699999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHH---H----------------HHHHHHHHHhcCc-----hhhhhh
Q 004891          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK---V----------------SRLWALDIAARRK-----PWIRSL  211 (725)
Q Consensus       156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~---~----------------a~~~a~~la~~~~-----~~~~~~  211 (725)
                       .+|++|++||++++|+||+++||||+|||++++.+   +                +.++++++.....     ..+...
T Consensus       200 -~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~L~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~l~~~  278 (407)
T 3ju1_A          200 -KMGLFLGLTAYHMNAADACYVGLADHYLNRDDKELMFDAMATLDWSDSPALNHQRLDTMINELSNQVDIPKGDSVLAES  278 (407)
T ss_dssp             -THHHHHHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHSSCCCSCHHHHHHHHHHHHHHHHTTCSSCCCCCHHHHT
T ss_pred             -HHHHHHHHcCCcCcHHHHHHCCCccEEcCHHHHHHHHHHHhcccccccccchhHHHHHHHHHhhhhccccCCchhHHHH
Confidence             99999999999999999999999999999999887   3                3334333322110     000000


Q ss_pred             -hccCCC--CChHHHHHHH-------HHHHHHHHHhCCCCh-hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHH
Q 004891          212 -HRTDKL--GSLSEAREVL-------KLARLQAKKTAPNMP-QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSR  280 (725)
Q Consensus       212 -~~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~  280 (725)
                       ......  .++....+.+       ..+....++-....| +...+|++++.+...+++++++.|.+.+..++.++|++
T Consensus       279 ~~~I~~~f~~sv~~i~~~L~~~~~~~~~a~~~a~~la~~sP~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~s~D~~  358 (407)
T 3ju1_A          279 QEMIDRLMAGSLTDIVTRMSTLSTDEAWLSKACATMLAGSPISWHLAYIQTQLGTKLSLAQCFKWELTVSVNVCAKGDFC  358 (407)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHCCCSCHHHHHHHHHHHHSCHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHSSHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHhcccccHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHH
Confidence             000000  1111110000       011111121112233 67889999999999999999999999999999999999


Q ss_pred             HHHHHHH-hh-hhhcCCC
Q 004891          281 GLVHVFF-AQ-RATSKVP  296 (725)
Q Consensus       281 ~~i~aF~-~~-r~~~~~~  296 (725)
                      |++++|+ +| |+|++.+
T Consensus       359 EGvrAflidKdr~P~w~~  376 (407)
T 3ju1_A          359 EGVRALLIDKDKQPKWQF  376 (407)
T ss_dssp             HHHHHHTTSCCCCCCCSS
T ss_pred             HHHHHHHhcCCcCCCCCC
Confidence            9999998 77 7777655

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=100.00  E-value=3.7e-46  Score=377.96  Aligned_cols=230  Identities=23%  Similarity=0.253  Sum_probs=202.1

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccc
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~   80 (725)
                      |+ +.|.++. +++|++||||||+.|++|.+|+++|.++++++++| ++|+|||||.|++||+|+|++++..... ....
T Consensus         3 M~-~~v~~~~-~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d-~vr~vvltg~g~~F~aG~Dl~~~~~~~~-~~~~   78 (233)
T 3r6h_A            3 MS-GPVTYTH-DDAIGVIRMDDGKVNVLGPTMQQALNEAIDAADRD-NVGALVIAGNHRVFSGGFDLKVLTSGEA-KPAI   78 (233)
T ss_dssp             ---CCEEEEE-ETTEEEEEECCSSSCCCSHHHHHHHHHHHHHHHHH-TCSEEEEECCSSEEECCSCHHHHC---C-HHHH
T ss_pred             CC-CceEEEE-ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEECCCCCccCCcChHHHhccCh-HHHH
Confidence            55 5689999 78999999999989999999999999999999987 6999999999999999999999875321 1122


Q ss_pred             ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHH
Q 004891           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (725)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~  160 (725)
                      .+....++++ ++|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++++|++++|..+|+
T Consensus        79 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~g~~~l~~~~g~~~a~  157 (233)
T 3r6h_A           79 DMLRGGFELS-YRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAYQ  157 (233)
T ss_dssp             HHHHHHHHHH-HHHHTCSSCEEEEECSEEETHHHHHHTTSSEEEECTTCCEECCGGGGTCCCCHHHHHHHHHHSCHHHHH
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEECCcchHHHHHHHHhCCEEEEeCCcEEECchhhhCCCCCccHHHHHHHHhCHHHHH
Confidence            2333445666 679999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCC
Q 004891          161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  240 (725)
Q Consensus       161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (725)
                      +|+++|++++|+||+++||||+|||++++.+++.++|+++++.|+.+++                               
T Consensus       158 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------------  206 (233)
T 3r6h_A          158 QAAGLAKTFFGETALAAGFIDEISLPEVVLSRAEEAAREFAGLNQQAHN-------------------------------  206 (233)
T ss_dssp             HHHHSCCEECHHHHHHHTSCSEECCGGGHHHHHHHHHHHHHTSCHHHHH-------------------------------
T ss_pred             HHHHcCCcCCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHcCCHHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999998875433                               


Q ss_pred             ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 004891          241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFK  271 (725)
Q Consensus       241 ~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~  271 (725)
                           .+|++++.....+++++++.|.+.|.
T Consensus       207 -----~~K~~l~~~~~~~l~~~l~~e~~~f~  232 (233)
T 3r6h_A          207 -----ATKLRARAEALKAIRAGIDGIEAEFG  232 (233)
T ss_dssp             -----HHHHHTTHHHHHHHHHHHHTSHHHHC
T ss_pred             -----HHHHHHHHHHHhHHHHHHHHHHHHhC
Confidence                 56778888888888999998888763

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=100.00  E-value=5.4e-46  Score=382.48  Aligned_cols=238  Identities=16%  Similarity=0.214  Sum_probs=205.2

Q ss_pred             CCcEEEEEecC-cEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccc
Q 004891            3 APRVTMEVGND-GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (725)
Q Consensus         3 ~~~i~~~~~~~-~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~   80 (725)
                      ++.|.++. ++ +|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++..........
T Consensus        22 ~~~i~~~~-~~~~Va~ItLnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~  100 (263)
T 2j5g_A           22 YENLHFHR-DENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGDVTNPREWD  100 (263)
T ss_dssp             CTTEEEEE-CTTCEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECEECSGGGCCTTSHHHHH
T ss_pred             CCeEEEEE-cCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCcccCcCHHHHhccCCHHHHH
Confidence            56788998 67 99999999994 89999999999999999999999999999999999999999999886421111111


Q ss_pred             ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeC-cccccCCCCCchhhchHhhhhCHHHH
Q 004891           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGL-PELTLGVIPGFGGTQRLPRLVGLSKA  159 (725)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~-pe~~~Gl~p~~g~~~~l~r~vG~~~a  159 (725)
                      .+.....+++ ..|.++||||||+|||+|+ ||++|+++||+|||+++++|++ ||+++|++|++|++++|+|++|..+|
T Consensus       101 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~L~r~vG~~~A  178 (263)
T 2j5g_A          101 KTYWEGKKVL-QNLLDIEVPVISAVNGAAL-LHSEYILTTDIILASENTVFQDMPHLNAGIVPGDGVHILWPLALGLYRG  178 (263)
T ss_dssp             HHHHHHHHHH-HHHHTCCSCEEEEECSEEC-SCGGGGGGCSEEEEETTCEECCCHHHHHTCCCCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEECCcch-HHHHHHHhCCEEEEcCCCEEecCcccccccCCCccHHHHHHHHcCHHHH
Confidence            1222234556 6689999999999999999 5999999999999999999999 99999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (725)
Q Consensus       160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (725)
                      ++|+++|++++|+||+++||||+|||++++.+++.++|+++++.++.+++                              
T Consensus       179 ~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------  228 (263)
T 2j5g_A          179 RYFLFTQEKLTAQQAYELNVVHEVLPQSKLMERAWEIARTLAKQPTLNLR------------------------------  228 (263)
T ss_dssp             HHHHHTTCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH------------------------------
T ss_pred             HHHHHcCCCCCHHHHHHCCCccEecChHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998875433                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhh
Q 004891          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQR  290 (725)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r  290 (725)
                            .+|++++.....+++++++.|           ...|++++|++||
T Consensus       229 ------~~K~~l~~~~~~~l~~~l~~e-----------~~~eg~~af~~~~  262 (263)
T 2j5g_A          229 ------YTRVALTQRLKRLVNEGIGYG-----------LALEGITATDLRN  262 (263)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHTTC
T ss_pred             ------HHHHHHHhhhhccHHHHHHHH-----------HHHhhHHHHHhcc
Confidence                  456777766665666666554           4569999999987

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=100.00  E-value=1e-45  Score=374.42  Aligned_cols=225  Identities=21%  Similarity=0.288  Sum_probs=200.4

Q ss_pred             CcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccc
Q 004891            4 PRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMP   83 (725)
Q Consensus         4 ~~i~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~   83 (725)
                      +.|.++. +++|++||||||+.|++|.+|+++|.+++++++.|  +|+|||||.|++||+|+|++++...  ......+.
T Consensus         6 ~~v~~~~-~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d--~~~vvltg~g~~F~aG~Dl~~~~~~--~~~~~~~~   80 (232)
T 3ot6_A            6 DLVSYHL-DDGVATLTLNNGKVNAISPDVIIAFNAALDQAEKD--RAIVIVTGQPGILSGGYDLKVMTSS--AEAAINLV   80 (232)
T ss_dssp             HHEEEEE-ETTEEEEEECCTTTTCBCHHHHHHHHHHHHHHHHT--TCEEEEECBTEEEECCBCHHHHHHC--HHHHHHHH
T ss_pred             cceEEEE-ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHhcC--CCEEEEECCCCCccCCcCHHHHhhC--hHHHHHHH
Confidence            4588888 79999999999989999999999999999999976  4899999999999999999998752  11122233


Q ss_pred             hhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCC-ceEeCcccccCCCCCchhhchHhhhhCHHHHHHH
Q 004891           84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM  162 (725)
Q Consensus        84 ~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~-a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l  162 (725)
                      ...+.++ ++|.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++++++++++++|..+|++|
T Consensus        81 ~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~g~~~l~~~ig~~~a~~l  159 (232)
T 3ot6_A           81 AQGSTLA-RRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAFNRS  159 (232)
T ss_dssp             HHHHHHH-HHHHTCSSCEEEECCEEEETHHHHHHTTSSEEEEECSSCCEECCTTTTTCCCCHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHH-HHHHcCCCCEEEEECCEeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCchhHHHHHHHHhCHHHHHHH
Confidence            3445666 6799999999999999999999999999999999998 8999999999999988999999999999999999


Q ss_pred             HHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCCh
Q 004891          163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  242 (725)
Q Consensus       163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (725)
                      ++||++++|+||+++||||+|||++++.+++.++|+++++.|+.+++                                 
T Consensus       160 ~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------------------------  206 (232)
T 3ot6_A          160 VINAEMFDPEGAMAAGFLDKVVSVEELQGAALAVAAQLKKINMNAHK---------------------------------  206 (232)
T ss_dssp             HTSCCEECHHHHHHHTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHH---------------------------------
T ss_pred             HHcCCccCHHHHHHCCCCCEecCHHHHHHHHHHHHHHHHcCCHHHHH---------------------------------
Confidence            99999999999999999999999999999999999999998875433                                 


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 004891          243 QHQACLDVIEEGIVHGGYSGVLKEAKVF  270 (725)
Q Consensus       243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~  270 (725)
                         .+|++++.....+++++++.|.+.|
T Consensus       207 ---~~K~~l~~~~~~~l~~~l~~E~~~~  231 (232)
T 3ot6_A          207 ---KTKLKVRKGLLDTLDAAIEQDRQHM  231 (232)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ---HHHHHHHHHhHhHHHHHHHHHHHhc
Confidence               5678888888888999999998764

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A

Probab=100.00  E-value=1.6e-44  Score=379.92  Aligned_cols=256  Identities=18%  Similarity=0.195  Sum_probs=215.4

Q ss_pred             CCcEEEEEe-cCcEEEEEeCCC-C----CCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEEcCCCCCcCCCCchhhh
Q 004891            3 APRVTMEVG-NDGVAIITLINP-P----VNALAIPIVAGLKDKFEEATS-----RDDVKAIVLTGNGGRFSGGFDINVFQ   71 (725)
Q Consensus         3 ~~~i~~~~~-~~~v~~i~l~~p-~----~Nal~~~~~~~l~~~l~~~~~-----~~~v~~vVl~g~g~~F~aG~Dl~~~~   71 (725)
                      |+++.+..+ +++|++|||||| +    +|+||.+|+.+|.+++++++.     |+++|+|||||.|++||+|+|++++.
T Consensus        29 y~~i~v~~~~~~~V~~itLnrp~k~n~~rpal~~~m~~eL~~al~~~~~d~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~  108 (305)
T 3m6n_A           29 GSTLRIIEEPQRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALFC  108 (305)
T ss_dssp             CTTEEEEEETTTTEEEEEECTTC-----CCSBCHHHHHHHHHHHHHHHHHHHHHTCSSCEEEEEESSSSSBCCBCHHHHH
T ss_pred             CceEEEEEEEECCEEEEEECCccccCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCeecCcCHHHHH
Confidence            456666543 789999999998 3    559999999999999999987     58999999999999999999999986


Q ss_pred             hccCCCc---ccccchhHHHHHHHHH---hhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCch
Q 004891           72 KVHGAGD---VSLMPDVSVELVVNLI---EDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFG  145 (725)
Q Consensus        72 ~~~~~~~---~~~~~~~~~~~~~~~l---~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g  145 (725)
                      .......   ...+.......+ ..+   .++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g  187 (305)
T 3m6n_A          109 QLIREGDRARLLDYAQRCVRGV-HAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMG  187 (305)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHH-HHHHTGGGTTCEEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSS
T ss_pred             hccccccHHHHHHHHHHHHHHH-HHHHHhcCCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEECchhccCcCCCcc
Confidence            5321111   111111122223 223   468999999999999999999999999999999999999999999999999


Q ss_pred             hhchHhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHH
Q 004891          146 GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEARE  225 (725)
Q Consensus       146 ~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~  225 (725)
                      ++++|+|++|..+|++|++||++++|+||+++||||+|||++++.+++.++|++|++ +|.                   
T Consensus       188 ~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~-~p~-------------------  247 (305)
T 3m6n_A          188 AYSFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVIRESKR-TPH-------------------  247 (305)
T ss_dssp             HHHHHTTTSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHTT-CHH-------------------
T ss_pred             HHHHHHHHhcHHHHHHHHHcCCCCCHHHHHHCCCCCEecChhHHHHHHHHHHHHHhh-ChH-------------------
Confidence            999999999999999999999999999999999999999999999999999999986 543                   


Q ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCCC
Q 004891          226 VLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (725)
Q Consensus       226 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  296 (725)
                                       +...+|++++.....+++++++.|.+.+..++.|+|....+..++-+++.++.+
T Consensus       248 -----------------a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~~~~m~~l~~~q~~~~~  301 (305)
T 3m6n_A          248 -----------------AWAAMQQVREMTTAVPLEEMMRITEIWVDTAMQLGEKSLRTMDRLVRAQSRRSG  301 (305)
T ss_dssp             -----------------HHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC----
T ss_pred             -----------------HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHhhccc
Confidence                             233678899999999999999999999999999999988888777766655443

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=100.00  E-value=4.4e-44  Score=381.16  Aligned_cols=204  Identities=25%  Similarity=0.334  Sum_probs=173.8

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (725)
                      |+|++|.++. +++|++||||||+ .|+||.+|+++|.+++++++.|++||+|||||.|++||+|+|++++.........
T Consensus        32 ~~~~~i~~e~-~~~Va~ItLnrP~~~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~~  110 (333)
T 3njd_A           32 DNLKTMTYEV-TDRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYAEGSSSAGG  110 (333)
T ss_dssp             TSCSSEEEEE-ETTEEEEEECCGGGTTCBCTHHHHHHHHHHHHHHHCTTCCEEEEEESTTSSBCCBC-------------
T ss_pred             CCCCeEEEEE-ECCEEEEEeCCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecCcCHHHHhhccccccc
Confidence            3577899999 8999999999995 8999999999999999999999999999999999999999999998653211100


Q ss_pred             -----------------------------cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCce
Q 004891           80 -----------------------------SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ  130 (725)
Q Consensus        80 -----------------------------~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~  130 (725)
                                                   ..+......++ ..|.++||||||+|||+|+|||++|+++||+|||+++++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~rias~~a~  189 (333)
T 3njd_A          111 GSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGF-ASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAADAK  189 (333)
T ss_dssp             --CCTTSTTCHHHHHHTTCSSSCCCHHHHHHHHHHHHHHH-THHHHSSSCEEEEECSEEETHHHHHHTTSSEEEECTTCE
T ss_pred             ccccccccccccccccccccccccchhhHHHHHHHHHHHH-HHHHhCCCCEEEEECCEEeHHHHHHHHhCCEEEECCCCe
Confidence                                         00112223444 568899999999999999999999999999999999999


Q ss_pred             EeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhh
Q 004891          131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR  209 (725)
Q Consensus       131 ~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~  209 (725)
                      |++||+++|++|++|   +|++++|..+|++|++||++++|+||+++||||+|||++++.+++.++|++|++.|+.+++
T Consensus       190 f~~pe~~lG~~P~~g---~l~~~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~ia~~~~~al~  265 (333)
T 3njd_A          190 IGYPPMRVWGVPAAG---LWAHRLGDQRAKRLLFTGDCITGAQAAEWGLAVEAPDPADLDARTERLVERIAAMPVNQLI  265 (333)
T ss_dssp             EECGGGGTTCCCTTC---CHHHHHCHHHHHHHHTTCCEEEHHHHHHTTSSSBCCCGGGHHHHHHHHHHHHHTSCHHHHH
T ss_pred             eechhhceeccCHHH---HHHHHHHHHHHHHHHhcCCCCCHHHHHHCCCccEecChHHHHHHHHHHHHHHHcCCHHHHH
Confidence            999999999999876   5899999999999999999999999999999999999999999999999999999876443

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=100.00  E-value=2.7e-44  Score=369.19  Aligned_cols=237  Identities=18%  Similarity=0.236  Sum_probs=201.7

Q ss_pred             CcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccccc
Q 004891            4 PRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (725)
Q Consensus         4 ~~i~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (725)
                      +.|.++. +++|++|||||| +.|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++... .......+
T Consensus        16 ~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~-~~~~~~~~   93 (257)
T 1szo_A           16 ENIRLER-DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLG-TPHDWDEI   93 (257)
T ss_dssp             TTEEEEE-ETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCS-SHHHHHHH
T ss_pred             ceEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCccccCcCchhhhcC-CHHHHHHH
Confidence            5689998 789999999999 58999999999999999999999999999999999999999999987531 11111112


Q ss_pred             chhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeC-cccccCCCCCchhhchHhhhhCHHHHHH
Q 004891           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGL-PELTLGVIPGFGGTQRLPRLVGLSKAIE  161 (725)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~-pe~~~Gl~p~~g~~~~l~r~vG~~~a~~  161 (725)
                      .....+++ ..|.++||||||+|||+|+ ||++|+++||+|||+++++|++ ||+++|++|++|++++|++++|..+|++
T Consensus        94 ~~~~~~~~-~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~l~r~vG~~~A~~  171 (257)
T 1szo_A           94 IFEGQRLL-NNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRY  171 (257)
T ss_dssp             HHHHHHHH-HHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHH-HHHHcCCCcEEEEECCchH-HHHHHHHHCCEEEEeCCCEEecCcccccccCCCccHHHHHHHHcCHHHHHH
Confidence            22234556 6689999999999999999 5999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCC
Q 004891          162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  241 (725)
Q Consensus       162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (725)
                      |+++|++++|+||+++||||+|||++++.+++.++|+++++.||.+++                                
T Consensus       172 llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------------  219 (257)
T 1szo_A          172 FLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEKPLLARR--------------------------------  219 (257)
T ss_dssp             HHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHTSCHHHHH--------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHHhCCHHHHH--------------------------------
Confidence            999999999999999999999999999999999999999998875433                                


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhh
Q 004891          242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA  291 (725)
Q Consensus       242 ~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~  291 (725)
                          .+|++++.....+++++++.|..           .+++++|-.+.+
T Consensus       220 ----~~K~~l~~~~~~~l~~~l~~~~~-----------~eg~~a~~~~~~  254 (257)
T 1szo_A          220 ----YARKVLTRQLRRVMEADLSLGLA-----------HEALAAIDLGME  254 (257)
T ss_dssp             ----HHHHHHSHHHHHHHHHHHHHHHH-----------HHHHHHHHHC--
T ss_pred             ----HHHHHHHhhhhccHHHHHHHHHH-----------Hhhhhhhhcccc
Confidence                45667776666666776666543           367888876544

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*

Probab=100.00  E-value=3.4e-44  Score=388.77  Aligned_cols=246  Identities=23%  Similarity=0.211  Sum_probs=201.4

Q ss_pred             CcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC--------C-CCCcCCCCchhhhhc
Q 004891            4 PRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--------G-GRFSGGFDINVFQKV   73 (725)
Q Consensus         4 ~~i~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~--------g-~~F~aG~Dl~~~~~~   73 (725)
                      +.|.++. +++|++|||||| +.|+||.+|+++|.++++.++.|++||+|||||.        | ++||+|+|++++...
T Consensus       167 ~~v~~e~-~~gVa~ItLNRP~k~NALs~~m~~eL~~al~~~~~D~~VRvVVLtG~~~~~p~~aG~~~FcAG~DL~~~~~~  245 (440)
T 2np9_A          167 EAVHLER-RDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQG  245 (440)
T ss_dssp             SSEEEEE-ETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECBCCSTTTTTCBCCBCCBCHHHHHTT
T ss_pred             ceEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCccccccCCCccccCCcchhhhhcc
Confidence            4688888 789999999999 5899999999999999999999999999999994        6 799999999998643


Q ss_pred             cCCCccc---ccchhHHHHHHHHH------------hhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCccccc
Q 004891           74 HGAGDVS---LMPDVSVELVVNLI------------EDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL  138 (725)
Q Consensus        74 ~~~~~~~---~~~~~~~~~~~~~l------------~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~  138 (725)
                      .......   ........++ +.+            .++||||||+|||+|+|||++|+++||+|||+++++|++||+++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~pkPvIAAVnG~A~GGG~eLALaCDirIAae~A~Fglpev~l  324 (440)
T 2np9_A          246 GISLVDFLMRRELGYIHKLV-RGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKE  324 (440)
T ss_dssp             CCCTTTTHHHHHHTHHHHHH-HCEECCSCSTTTTTCCEECCCEEEEECSEEETHHHHHGGGCSEEEEETTCEEECCCTTT
T ss_pred             CcchhhhhhHHHHHHHHHHH-HHHHhhcccchhhhhhcCCCCEEEEECCcccccchHHHhhCCEEEEcCCCEEECchhcc
Confidence            2111000   0001123333 333            47999999999999999999999999999999999999999999


Q ss_pred             CCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCC
Q 004891          139 GVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLG  218 (725)
Q Consensus       139 Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~  218 (725)
                      |++|++| +++|++++|..+|++|++||++|+|+||+++||||+|||++++.+++.+++++++.   .            
T Consensus       325 Gl~P~~g-~~~L~rlvG~~~A~ellLtG~~i~A~EA~~~GLV~~Vvp~~eL~~~a~~~A~~la~---~------------  388 (440)
T 2np9_A          325 GIIPGAA-NLRLGRFAGPRVSRQVILEGRRIWAKEPEARLLVDEVVEPDELDAAIERSLTRLDG---D------------  388 (440)
T ss_dssp             CCCCTTH-HHHHHHHHHHHHHHHHHHHCCCEETTSGGGGGTCSEEECHHHHHHHHHHHHHTTCS---H------------
T ss_pred             CcCcchH-HHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecChHHHHHHHHHHHHHhCH---H------------
Confidence            9999887 68999999999999999999999999999999999999999999999988877642   1            


Q ss_pred             ChHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHH---HHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhh
Q 004891          219 SLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGY---SGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT  292 (725)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~  292 (725)
                                              ++..+|++++.... +.+   +.++.|...+..++.|+|++|++.+|++||++
T Consensus       389 ------------------------Av~~~K~~l~~~~~-~~~~~~~~l~~e~~~~~~~~~s~D~~Egv~AFleKR~a  440 (440)
T 2np9_A          389 ------------------------AVLANRRMLNLADE-SPDGFRAYMAEFALMQALRLYGHDVIDKVGRFGGRPPA  440 (440)
T ss_dssp             ------------------------HHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTCC-----
T ss_pred             ------------------------HHHHHHHHHHhhhc-chhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhCCCC
Confidence                                    22345666666544 433   56677788889999999999999999999863

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=100.00  E-value=1.8e-43  Score=367.82  Aligned_cols=204  Identities=27%  Similarity=0.340  Sum_probs=173.4

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (725)
                      |+++.|.++. +++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.........
T Consensus        17 ~~~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~   95 (279)
T 3t3w_A           17 RTEMYIDYDV-SDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRGGGPVPDKLTL   95 (279)
T ss_dssp             --CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSCSBCCBCCC--------CCH
T ss_pred             ccCCeEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceeeccChHhhhhcccccch
Confidence            4567899999 7899999999995 8999999999999999999999999999999999999999999998653221111


Q ss_pred             -ccc---chhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhC
Q 004891           80 -SLM---PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG  155 (725)
Q Consensus        80 -~~~---~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG  155 (725)
                       ..+   ......++ ++|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|+ |+++++.+ ++++|
T Consensus        96 ~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl-~~~~~~~~-~~~vG  172 (279)
T 3t3w_A           96 EFIYAHESRRYLEYS-LRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDI-GGVEYHGH-TWELG  172 (279)
T ss_dssp             HHHHHHHHHHTHHHH-HHHHHCSSCEEEEECSEEEGGGHHHHTTSSEEEEETTCEEECCGGGGTC-SSCSSCCH-HHHHC
T ss_pred             HHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeEhHHHHHHHHhCCEEEecCCCEEeCcHHhcCC-CCchHHHH-HhhcC
Confidence             011   11223445 6689999999999999999999999999999999999999999999999 55555544 99999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhh
Q 004891          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWI  208 (725)
Q Consensus       156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~  208 (725)
                      ..+|++|++||++++|+||+++||||+|||++++.+++.++|+++++.|+.++
T Consensus       173 ~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~  225 (279)
T 3t3w_A          173 PRKAKEILFTGRAMTAEEVAQTGMVNRVVPRDRLDAETRALAGEIAKMPPFAL  225 (279)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHcCCccCHHHHHHCCCCcEeeChHHHHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999999999999999999999999999999999999887543

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=100.00  E-value=1.6e-39  Score=353.76  Aligned_cols=204  Identities=24%  Similarity=0.330  Sum_probs=183.1

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-----------CCCCCHHHHHHHHHHHHHHhcC-CCceEEEEEc-CCCCCcCCCCchh
Q 004891            3 APRVTMEVGNDGVAIITLINPP-----------VNALAIPIVAGLKDKFEEATSR-DDVKAIVLTG-NGGRFSGGFDINV   69 (725)
Q Consensus         3 ~~~i~~~~~~~~v~~i~l~~p~-----------~Nal~~~~~~~l~~~l~~~~~~-~~v~~vVl~g-~g~~F~aG~Dl~~   69 (725)
                      +.+|.++. +++|++||||||+           .|+||.+|+.+|.+++++++.| +++|+||||| .|++||+|+|+++
T Consensus        20 ~~~v~ve~-~ggVA~ITLNRPed~~l~~g~~~k~NALs~~ml~eL~~AL~~~~~D~~~VRaVVLTGa~G~~FcAGaDL~e   98 (556)
T 2w3p_A           20 YKHWKLSF-NGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIFM   98 (556)
T ss_dssp             CSSEEEEE-ETTEEEEEECCCTTCCSSSSCCCCTTEECHHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECEECHHH
T ss_pred             CceEEEEe-eCCEEEEEEecccccccccccCCCCCCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCCCcccCCcCHHH
Confidence            45688888 7899999999995           6999999999999999999999 9999999999 8999999999999


Q ss_pred             hhhccCCCcccccchhHHHHHHHHH----hhCCCcEEEEEcccccchhhHHhhhcCEEEeeCC--ceEeCcccc-cCCCC
Q 004891           70 FQKVHGAGDVSLMPDVSVELVVNLI----EDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELT-LGVIP  142 (725)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~--a~~~~pe~~-~Gl~p  142 (725)
                      +..... .....+....++++ +.|    .++||||||+|||+|+|||++|+++||+|||+++  ++|++||++ +|++|
T Consensus        99 l~~~~~-~~~~~~~~~~~~l~-~~L~~a~~~~pKPVIAAVnG~AlGGGleLALACD~rIAse~~~A~FglPEv~~LGL~P  176 (556)
T 2w3p_A           99 LGLSTH-AWKVNFCKFTNETR-NGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLP  176 (556)
T ss_dssp             HHHSCH-HHHHHHHHHHHHHH-HHHHHHHHHTSCEEEEEECSEEETHHHHHHHHSSEEEEECSSSCEEECCHHHHHSSCC
T ss_pred             Hhhccc-HHHHHHHHHHHHHH-HHHHHHHhcCCCCEEEEECCeechhhHHHHHhCCEEEEcCCCCcEEecccccccCCCC
Confidence            865321 11111223344555 567    8999999999999999999999999999999999  999999999 99999


Q ss_pred             CchhhchHh--hhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhh
Q 004891          143 GFGGTQRLP--RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR  209 (725)
Q Consensus       143 ~~g~~~~l~--r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~  209 (725)
                      ++|++++|+  |++|..+|++|+++|++++|+||+++||||+|||++++.+++.++|+++++.++.+++
T Consensus       177 g~Ggt~rLp~~RlVG~~rA~eLlLTGr~isA~EAl~lGLVdeVVp~~eL~~~A~~lA~~LA~~~p~Av~  245 (556)
T 2w3p_A          177 GTGGLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVKPNQFDQAIQARALELAAQSDRPAH  245 (556)
T ss_dssp             TTTHHHHHHHTSCCCHHHHHHHTTCSSCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHHTTCCCCTT
T ss_pred             CccHHHHHHhhccCCHHHHHHHHHcCCCCCHHHHHHCCCceEEeChhHHHHHHHHHHHHHHcCChHHHh
Confidence            999999999  9999999999999999999999999999999999999999999999999999887654

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=99.88  E-value=2.6e-22  Score=223.36  Aligned_cols=149  Identities=11%  Similarity=0.074  Sum_probs=135.8

Q ss_pred             cCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcchhhhhhhHHH
Q 004891          422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPY  501 (725)
Q Consensus       422 ~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~  501 (725)
                      .+++.+.++.  ...++.++++.|+++    ++++|+++++.|++++++.+..+++.+|+.|+.++|.||||+||++.++
T Consensus       324 ~~~~~~~~~~--~~~~~~~~v~~~~~~----~~~vev~~~~~t~~~~~~~~~~~~~~~gk~~~~~~d~~g~i~~Rll~~~  397 (483)
T 3mog_A          324 ETQGETAQAL--AIRLARPVVVIDKMA----GKVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQIADYPGMLIWRTVAMI  397 (483)
T ss_dssp             ECSSSCHHHH--HHHHTSCEEEEECCS----SSEEEEEECTTSCHHHHHHHHHHHHTTTCEEEECCCCTTTTHHHHHHHH
T ss_pred             ccCCcchHHH--hhccccceeeeeccc----cceEEEecCCCCCHHHHHHHHHHHHHcCCceeeecccccHHHHHHHHHH
Confidence            5667777666  345678999999988    7899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHHHHhhCCCC-CCCcHHHHHHHHcCCCccc
Q 004891          502 SQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR-SFQSPLVDLLLKSGRNGKA  576 (725)
Q Consensus       502 ~~Ea~~l~~~Gv-~~~dID~~~-~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~-~~~~~~l~~~v~~g~~G~k  576 (725)
                      +|||++|+++|+ +++|||.++ .|+|||+|||+|+|.+|+|+++++++.+++.+++. +.|+++|++|+++|++|..
T Consensus       398 ~nEA~~~l~eGvas~~diD~a~~~G~G~P~GPl~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~lL~~~v~~G~~~~~  475 (483)
T 3mog_A          398 INEALDALQKGVASEQDIDTAMRLGVNYPYGPLAWGAQLGWQRILRLLENLQHHYGEERYRPCSLLRQRALLESGYES  475 (483)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHSCCSSCHHHHHHHHCHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHTCC--
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHcCCCCCC
Confidence            999999999998 999999999 99999999999999999999999999999999874 4499999999999976543

>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304}

Probab=99.87  E-value=1.8e-23  Score=185.44  Aligned_cols=103  Identities=20%  Similarity=0.153  Sum_probs=85.4

Q ss_pred             HcCCeeE-EEcCCcchhhhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHHHHhhC
Q 004891          478 IIKKVPV-VVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAF  554 (725)
Q Consensus       478 ~lGk~~v-~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv-~~~dID~~~-~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~  554 (725)
                      .++|.+| +++|.||||+||++.+++|||++++++|+ +++|||.++ .++|||+|||+++|.+|+|+++++++.+++.+
T Consensus         3 ~~~K~~v~~~~d~~gfi~nRll~~~~~eA~~ll~eGva~~~dID~a~~~g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~   82 (110)
T 3ctv_A            3 SKGRPQIDSSKATDKINPMDFTFVEINEAVKLVEMGVATPQDIDTAIKLGLNRPFGPFELAKQFGAEQIAKRLEELAKQF   82 (110)
T ss_dssp             --------------CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTCSSCHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCcccCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4689999 88999999999999999999999999997 999999999 89999999999999999999999999999988


Q ss_pred             CC-CCCCcHHHHHHHHcCCCccccCce
Q 004891          555 PD-RSFQSPLVDLLLKSGRNGKANGKG  580 (725)
Q Consensus       555 ~~-~~~~~~~l~~~v~~g~~G~k~g~G  580 (725)
                      ++ ++.|++++++|+++|++|+|||+|
T Consensus        83 g~~~~~p~~~L~~~v~~G~lG~k~g~G  109 (110)
T 3ctv_A           83 GKKIFEPAKTLKEGKLEELLKAGKAEG  109 (110)
T ss_dssp             CCGGGSCCHHHHTTTHHHHHHHHHHC-
T ss_pred             CCCcCCCCHHHHHHHHcCCCCccCCCC
Confidence            87 445899999999999999999998

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.81  E-value=1.1e-20  Score=215.56  Aligned_cols=169  Identities=20%  Similarity=0.207  Sum_probs=143.8

Q ss_pred             cCcEEEEEeCCC-CCCC--CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHH
Q 004891           12 NDGVAIITLINP-PVNA--LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVE   88 (725)
Q Consensus        12 ~~~v~~i~l~~p-~~Na--l~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~   88 (725)
                      +++|++|++++| ..|+  ++..+.++|.++|++++.|+++|+|||++.+    .|+|+....             ...+
T Consensus       300 ~~~VavI~l~g~i~~n~~~~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~s----pGG~~~~~~-------------~i~~  362 (593)
T 3bf0_A          300 GDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNS----PGGSVTASE-------------VIRA  362 (593)
T ss_dssp             SCEEEEEEEEEEEESSSSCTTSEEHHHHHHHHHHHHHCTTEEEEEEEEEE----EEECHHHHH-------------HHHH
T ss_pred             CCCEEEEEEeeeecCCccccchhHHHHHHHHHHHHHhCCCCCEEEEEecC----CCCCHHHHH-------------HHHH
Confidence            578999999999 4677  6889999999999999999999999999874    477776431             1234


Q ss_pred             HHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCccc------------ccCCCCCc------------
Q 004891           89 LVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL------------TLGVIPGF------------  144 (725)
Q Consensus        89 ~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~------------~~Gl~p~~------------  144 (725)
                      .+ +++..++|||||+|+|.|.|||+.|+++||+|+|++++.|+.+++            ++|+.|..            
T Consensus       363 ~i-~~l~~~~kPVia~v~g~AasgG~~iA~aaD~iva~p~a~~Gsigv~~~~~~~~~~~~klGi~~~~~~~g~~k~~~~~  441 (593)
T 3bf0_A          363 EL-AAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSIT  441 (593)
T ss_dssp             HH-HHHHHTTCCEEEEEEEEEETHHHHTTTTCSEEEECTTCEEECCCEEEEEEECHHHHHHTTCEEECCBSCGGGCCCTT
T ss_pred             HH-HHHHhCCCCEEEEECCChHHHHHHHHHhCCEEEECCCCEeecceeEEecCchHHHHHhcCceeeeeecccccccCcC
Confidence            45 558889999999999999999999999999999999999999985            68987632            


Q ss_pred             -hhh---------------chHhhhhCHHH-----HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHH
Q 004891          145 -GGT---------------QRLPRLVGLSK-----AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWAL  198 (725)
Q Consensus       145 -g~~---------------~~l~r~vG~~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~  198 (725)
                       +.+               .++.+.++..+     +.+++++|+.++|+||+++||||+|++.+++.+.+.+++.
T Consensus       442 ~~~t~~~~~~l~~~l~~~~~~f~~~V~~~Rg~~~~a~~~l~~G~~~ta~eA~~~GLVD~v~~~~~~~~~a~~~a~  516 (593)
T 3bf0_A          442 RALPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAK  516 (593)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHTTCTTCEEEHHHHHHHTSCSEECCHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCcCHHHHHHCCCCcCccCHHHHHHHHHHHcC
Confidence             233               56788899888     9999999999999999999999999998888887777543

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=99.79  E-value=8e-19  Score=177.90  Aligned_cols=168  Identities=18%  Similarity=0.179  Sum_probs=130.1

Q ss_pred             cCcEEEEEeCCC-CCCC-----CC--HHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccc
Q 004891           12 NDGVAIITLINP-PVNA-----LA--IPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMP   83 (725)
Q Consensus        12 ~~~v~~i~l~~p-~~Na-----l~--~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~   83 (725)
                      +++|++|+++.+ ..+.     ++  .-.+++|.++|+++++|+++|+|||++.    |.|+|+....            
T Consensus         2 ~~~iavi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~----s~Gg~~~~~~------------   65 (240)
T 3rst_A            2 SSKIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVN----SPGGGVYESA------------   65 (240)
T ss_dssp             CCEEEEEEEESCBCCC---------CCCCHHHHHHHHHHHHHCTTEEEEEEEEE----ECCBCHHHHH------------
T ss_pred             CCeEEEEEEEEEEcCCCCcCcccccCCcCHHHHHHHHHHHHhCCCcEEEEEEec----CCCCCHHHHH------------
Confidence            578999999877 2221     11  0136899999999999999999999986    6788886532            


Q ss_pred             hhHHHHHHHHHhh-CCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCc---------------------ccccCCC
Q 004891           84 DVSVELVVNLIED-CKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLP---------------------ELTLGVI  141 (725)
Q Consensus        84 ~~~~~~~~~~l~~-~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~p---------------------e~~~Gl~  141 (725)
                       ...+.+ +.+.. ++|||||+|+|.|.|||++|+++||+|+|++++.|+.+                     +++.|..
T Consensus        66 -~i~~~l-~~~~~~~~kPVia~v~g~a~~gG~~lA~a~D~i~a~~~a~~g~~Gv~~~~~~~~~~l~k~Gi~~~~~~~G~~  143 (240)
T 3rst_A           66 -EIHKKL-EEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVNYSKLADKLGISFETIKSGAH  143 (240)
T ss_dssp             -HHHHHH-HHHHHHHCCCEEEEEEEEEETHHHHHHTTSSEEEECTTCEEECCCCEEEEEECHHHHHHHTCEEEEEESSTT
T ss_pred             -HHHHHH-HHHHHhCCCeEEEEECCeehHhHHHHHHhCCeeEECCCCeEeccceeeEecCHHHHHHHcCCeEEEEecccc
Confidence             123445 44666 89999999999999999999999999999999999999                     6677777


Q ss_pred             CCchhh--------------------------chHhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHH
Q 004891          142 PGFGGT--------------------------QRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRL  195 (725)
Q Consensus       142 p~~g~~--------------------------~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~  195 (725)
                      +..+..                          ..-.|.++.....+ +++|+.+++++|+++||||++.+.+++.+.+.+
T Consensus       144 k~~~~p~~~~s~~~~~~~~~~l~~~~~~f~~~Va~~R~l~~~~~~~-~~~g~~~~a~~A~~~GLVD~i~~~~~~~~~~~~  222 (240)
T 3rst_A          144 ADIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRGMPKAEVKK-IADGRVYDGRQAKKLNLVDELGFYDDTITAMKK  222 (240)
T ss_dssp             TTTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHH-HCSSCEEEHHHHHHTTSSSEECCHHHHHHHHHH
T ss_pred             ccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH-HhcCCcccHHHHHHcCCCcccCCHHHHHHHHHH
Confidence            765522                          22344556555554 789999999999999999999988887777666


Q ss_pred             HHH
Q 004891          196 WAL  198 (725)
Q Consensus       196 ~a~  198 (725)
                      ++.
T Consensus       223 ~~~  225 (240)
T 3rst_A          223 DHK  225 (240)
T ss_dssp             HCG
T ss_pred             HhC
Confidence            543

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=99.77  E-value=4.5e-18  Score=176.98  Aligned_cols=189  Identities=15%  Similarity=0.086  Sum_probs=145.8

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCC---cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-c
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~---~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (725)
                      .+||+|||+|.||.+||..|+++|+   +|++||++++++++..+.          .             .+..+++. +
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~----------~-------------gi~~~~~~~~   59 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEK----------C-------------GVHTTQDNRQ   59 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHT----------T-------------CCEEESCHHH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHH----------c-------------CCEEeCChHH
Confidence            4689999999999999999999999   999999999987765321          0             13334444 6


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHHh-CCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeE-ecC
Q 004891          384 EFKDVDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEI-VRT  461 (725)
Q Consensus       384 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~-~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lvei-i~~  461 (725)
                      .+++||+||+|||  ++...++++++.+. ++++++|+|++++++++.+...+..+.+++++||+.|...+..+++ +++
T Consensus        60 ~~~~aDvVilav~--p~~~~~vl~~l~~~~l~~~~iiiS~~agi~~~~l~~~l~~~~~vvr~mPn~p~~v~~g~~~l~~~  137 (280)
T 3tri_A           60 GALNADVVVLAVK--PHQIKMVCEELKDILSETKILVISLAVGVTTPLIEKWLGKASRIVRAMPNTPSSVRAGATGLFAN  137 (280)
T ss_dssp             HHSSCSEEEECSC--GGGHHHHHHHHHHHHHTTTCEEEECCTTCCHHHHHHHHTCCSSEEEEECCGGGGGTCEEEEEECC
T ss_pred             HHhcCCeEEEEeC--HHHHHHHHHHHHhhccCCCeEEEEecCCCCHHHHHHHcCCCCeEEEEecCChHHhcCccEEEEeC
Confidence            7899999999998  67888999999998 8899899999999999999988887789999999999999887774 568


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEEcCCc--chh-----hhhhhHHHHHHHHH--HHHcCCCHHHHHHHH
Q 004891          462 ERTSAQVILDLMTVGKIIKKVPVVVGNCT--GFA-----VNRAFFPYSQSARL--LVSLGVDVFRIDSAI  522 (725)
Q Consensus       462 ~~t~~e~~~~~~~l~~~lGk~~v~v~d~~--Gfi-----~nRl~~a~~~Ea~~--l~~~Gv~~~dID~~~  522 (725)
                      +.++++.++.++++++.+|+.+++..+..  .+.     ..-+++ ++.|++.  .++.|+++++.-.++
T Consensus       138 ~~~~~~~~~~v~~l~~~iG~~~~v~~E~~~d~~talsgsgpa~~~-~~~eal~~a~v~~Gl~~~~a~~l~  206 (280)
T 3tri_A          138 ETVDKDQKNLAESIMRAVGLVIWVSSEDQIEKIAALSGSGPAYIF-LIMEALQEAAEQLGLTKETAELLT  206 (280)
T ss_dssp             TTSCHHHHHHHHHHHGGGEEEEECSSHHHHHHHHHHTTSHHHHHH-HHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCeEEECCHHHhhHHHHHhccHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHH
Confidence            88999999999999999998544323210  000     012222 2223332  346788888876665

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=99.76  E-value=3.1e-19  Score=189.39  Aligned_cols=203  Identities=17%  Similarity=0.207  Sum_probs=158.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      +||+|||+|.||.++|..|+++|+ +|++||++++.++.....+.....            ......++..+++++++++
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~------------~~~~~~~i~~t~d~~a~~~   72 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMV------------MFGSTSKVIGTDDYADISG   72 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHH------------HHTCCCCEEEESCGGGGTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhh------------hcCCCcEEEECCCHHHhCC
Confidence            589999999999999999999999 999999999887753211211100            0111235666677788999


Q ss_pred             CCEEEEec--------------cCChHHHHHHHHHHHHhCCCCeEE--EecCCCCChHHHhcccCC-CCcEEEEecCCCC
Q 004891          388 VDMVIEAV--------------IESVPLKQKIFSELEKACPPHCIL--ATNTSTIDLNIVGEKTSS-QDRIIGAHFFSPA  450 (725)
Q Consensus       388 aDlVIeav--------------pe~~~~k~~v~~~l~~~~~~~~ii--~s~tS~~~~~~l~~~~~~-~~r~ig~h~~~p~  450 (725)
                      ||+||+|+              +++..+++++++++.++++ ++++  +||++.+....+.+.... ++|++|+      
T Consensus        73 aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~-~~iii~~sNp~~~~~~~~~~~~~~~~~rviG~------  145 (317)
T 2ewd_A           73 SDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCP-NAFVICITNPLDVMVSHFQKVSGLPHNKVCGM------  145 (317)
T ss_dssp             CSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECCSSHHHHHHHHHHHHCCCGGGEEES------
T ss_pred             CCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHHHhhCCCHHHEEec------
Confidence            99999999              7888999999999999975 7766  567666665666666554 6788764      


Q ss_pred             CCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcchhhhh---hhHHHHHHH-------HHHHHcCC-CHHHHH
Q 004891          451 HVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNR---AFFPYSQSA-------RLLVSLGV-DVFRID  519 (725)
Q Consensus       451 ~~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nR---l~~a~~~Ea-------~~l~~~Gv-~~~dID  519 (725)
                                  .|+.++......+.+.+|+.   .++.+||++||   .++++++++       ..++++|+ +++++|
T Consensus       146 ------------~t~ld~~r~~~~la~~lg~~---~~~v~~~v~g~Hg~~~~~~~~~a~v~g~~~~~~~~~g~~~~~~id  210 (317)
T 2ewd_A          146 ------------AGVLDSSRFRTFIAQHFGVN---ASDVSANVIGGHGDGMVPATSSVSVGGVPLSSFIKQGLITQEQID  210 (317)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHTSC---GGGEECCEEBCSSTTCEECGGGCEETTEEHHHHHHTTSSCHHHHH
T ss_pred             ------------cCcHHHHHHHHHHHHHhCcC---hhhceEEEEecCCCceeEEeeccccCCEEHHHHHhccCCCHHHHH
Confidence                        36788888888999999987   47999999999   888899988       88889985 999999


Q ss_pred             HHHHhcCCCccHHHHHHhhch-HHHHHHH
Q 004891          520 SAIRSFGLPIGPFQLLDLAGY-GVAAATS  547 (725)
Q Consensus       520 ~~~~~~G~p~Gpf~~~D~~Gl-d~~~~~~  547 (725)
                      .++...  ++|||+++|..|. ++.+.+.
T Consensus       211 ~~~~~~--~~~~~ei~~~~g~g~~~~~~a  237 (317)
T 2ewd_A          211 EIVCHT--RIAWKEVADNLKTGTAYFAPA  237 (317)
T ss_dssp             HHHHHH--HHHHHHHHHHHSSSCCCHHHH
T ss_pred             HHHHHH--HhhHHHHHHhhcCCchHHHHH
Confidence            998432  7899999998887 5554433

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A

Probab=99.76  E-value=4.1e-18  Score=169.75  Aligned_cols=148  Identities=23%  Similarity=0.302  Sum_probs=125.6

Q ss_pred             cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHH
Q 004891           12 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV   91 (725)
Q Consensus        12 ~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~   91 (725)
                      .+.|++|++++    ++++.+.+.|.++|+.++++ ++++|||+..    |.|+|+...                ..++ 
T Consensus         7 ~~~V~vI~i~g----~I~~~~~~~l~~~l~~a~~~-~~~~Ivl~in----spGG~v~~~----------------~~i~-   60 (230)
T 3viv_A            7 KNIVYVAQIKG----QITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADAM----------------MNIV-   60 (230)
T ss_dssp             CCEEEEEEEES----CBCHHHHHHHHHHHHHHHHT-TCSEEEEEEE----BSCEEHHHH----------------HHHH-
T ss_pred             CCeEEEEEEeC----EECHHHHHHHHHHHHHHhcC-CCCEEEEEEe----CCCcCHHHH----------------HHHH-
Confidence            46799999985    69999999999999999864 6999999875    677776433                2455 


Q ss_pred             HHHhhCCCcEEEEE---cccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhc---------------hHhhh
Q 004891           92 NLIEDCKKPIVAAV---EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ---------------RLPRL  153 (725)
Q Consensus        92 ~~l~~~~kp~Iaav---~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~---------------~l~r~  153 (725)
                      +.|..++||||++|   +|.|.|+|+.|+++||+++|+++++|+.+++..+. |..|.+.               .+++.
T Consensus        61 ~~i~~~~~PVia~v~p~~G~AasaG~~ia~a~d~~~a~p~a~ig~~~p~~~~-~~~G~~~~~~~k~~~~~~~~~~~la~~  139 (230)
T 3viv_A           61 QRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGY-SQNGSIIEAPPAITNYFIAYIKSLAQE  139 (230)
T ss_dssp             HHHHTCSSCEEEEECSTTCEEETHHHHHHHTSSEEEECTTCEEECCCEEEEE-CTTSCEEECCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCEEEEEecCCCEEhHHHHHHHHhcCceeECCCCEEEeccceecC-CCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            66889999999999   99999999999999999999999999999987533 5445421               46777


Q ss_pred             hCH--HHHHHHHHcCCCCCHHHHHHcCCcceecCc
Q 004891          154 VGL--SKAIEMMLLSKSITSEEGWKLGLIDAVVTS  186 (725)
Q Consensus       154 vG~--~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  186 (725)
                      .|.  ..+.+++.++..++|+||+++||||+|++.
T Consensus       140 ~Gr~~~~a~~~~~~~~~ltA~EAle~GliD~V~~~  174 (230)
T 3viv_A          140 SGRNATIAEEFITKDLSLTPEEALKYGVIEVVARD  174 (230)
T ss_dssp             TTCCHHHHHHHHHTCCEECHHHHHHTTSCSEECSS
T ss_pred             hCcCHHHHHHHHhcCCeecHHHHHHcCCceEecCC
Confidence            885  789999999999999999999999999964

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=99.72  E-value=2.9e-17  Score=169.82  Aligned_cols=211  Identities=10%  Similarity=0.026  Sum_probs=154.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCc-EEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~-V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      +||+|||+|.||..+|..|++.|++ |++||+++++++...+.+                       .+..++++ +.++
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~-----------------------g~~~~~~~~~~~~   67 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKV-----------------------EAEYTTDLAEVNP   67 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHT-----------------------TCEEESCGGGSCS
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHc-----------------------CCceeCCHHHHhc
Confidence            5899999999999999999999999 999999998876643210                       12334555 5678


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCC-----CCCCeeeEecC
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA-----HVMPLLEIVRT  461 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~-----~~~~lveii~~  461 (725)
                      +||+||+|+|++  ...+++.++.+.++++++|++++++.+.+.+.+.+..   .-..|++.|.     ..++.+.++. 
T Consensus        68 ~~Dvvi~av~~~--~~~~v~~~l~~~~~~~~ivv~~s~~~~~~~l~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~v-  141 (266)
T 3d1l_A           68 YAKLYIVSLKDS--AFAELLQGIVEGKREEALMVHTAGSIPMNVWEGHVPH---YGVFYPMQTFSKQREVDFKEIPFFI-  141 (266)
T ss_dssp             CCSEEEECCCHH--HHHHHHHHHHTTCCTTCEEEECCTTSCGGGSTTTCSS---EEEEEECCCC---CCCCCTTCCEEE-
T ss_pred             CCCEEEEecCHH--HHHHHHHHHHhhcCCCcEEEECCCCCchHHHHHHHHh---ccCcCCceecCCCchhhcCCCeEEE-
Confidence            999999999955  3478888998888899999999999888776554433   2236776652     1223333332 


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEEcCC--cch-----hhhhhh--HHHHHHHHHHHHcCCCHHHHHHHH-Hh------c
Q 004891          462 ERTSAQVILDLMTVGKIIKKVPVVVGNC--TGF-----AVNRAF--FPYSQSARLLVSLGVDVFRIDSAI-RS------F  525 (725)
Q Consensus       462 ~~t~~e~~~~~~~l~~~lGk~~v~v~d~--~Gf-----i~nRl~--~a~~~Ea~~l~~~Gv~~~dID~~~-~~------~  525 (725)
                      ..++++.++.++++++.+|+.++++++.  +++     ++|++.  ...+.|++. .+.|++++++..++ ..      .
T Consensus       142 ~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~eal~-~~~Gl~~~~~~~l~~~~~~~~~~~  220 (266)
T 3d1l_A          142 EASSTEDAAFLKAIASTLSNRVYDADSEQRKSLHLAAVFTCNFTNHMYALAAELL-KKYNLPFDVMLPLIDETARKVHEL  220 (266)
T ss_dssp             EESSHHHHHHHHHHHHTTCSCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCGGGGHHHHHHHHHHHHHS
T ss_pred             ecCCHHHHHHHHHHHHhcCCcEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHhc
Confidence            2357999999999999999999999754  356     677765  334456532 46699888875544 21      2


Q ss_pred             ---CCCccHHHHHHhhchHHHHHHHHH
Q 004891          526 ---GLPIGPFQLLDLAGYGVAAATSKE  549 (725)
Q Consensus       526 ---G~p~Gpf~~~D~~Gld~~~~~~~~  549 (725)
                         +.++||+...|..|++.....++.
T Consensus       221 ~~~~~~~GP~~r~d~~~l~~~l~~l~~  247 (266)
T 3d1l_A          221 EPKTAQTGPAIRYDENVIGNHLRMLAD  247 (266)
T ss_dssp             CHHHHCCSTTTTTCHHHHHHHHHHTTT
T ss_pred             ChhhhCCCCCccCCHHHHHHHHHHHhc
Confidence               346799999999999988877654

>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304}

Probab=99.71  E-value=9.1e-18  Score=148.65  Aligned_cols=84  Identities=27%  Similarity=0.445  Sum_probs=78.5

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCC-CCCCC
Q 004891          620 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPS  698 (725)
Q Consensus       620 ~~~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~  698 (725)
                      +...|.||++.+++|||++++++||+ |++|||.+|++|+|||+   |||+++|.+|++.++++++.+.+.+++ +|.|+
T Consensus        15 ~~gfi~nRll~~~~~eA~~ll~eGva-~~~dID~a~~~g~G~p~---GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~   90 (110)
T 3ctv_A           15 TDKINPMDFTFVEINEAVKLVEMGVA-TPQDIDTAIKLGLNRPF---GPFELAKQFGAEQIAKRLEELAKQFGKKIFEPA   90 (110)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHTTCSS---CHHHHHHHHCHHHHHHHHHHHHHHHCCGGGSCC
T ss_pred             CccHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHcCCCCc---cHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCC
Confidence            34579999999999999999999999 99999999999999999   999999999999999999999999988 89999


Q ss_pred             HHHHHHHHc
Q 004891          699 RFLEERATK  707 (725)
Q Consensus       699 ~~l~~~~~~  707 (725)
                      ++|++|+++
T Consensus        91 ~~L~~~v~~   99 (110)
T 3ctv_A           91 KTLKEGKLE   99 (110)
T ss_dssp             HHHHTTTHH
T ss_pred             HHHHHHHHc
Confidence            999999843

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=99.71  E-value=8.6e-17  Score=164.40  Aligned_cols=188  Identities=16%  Similarity=0.180  Sum_probs=143.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC----cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-c
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~----~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (725)
                      +||+|||+|.||.++|..|+++|+    +|++||++++++++..+.+                       .+..+++. +
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~-----------------------g~~~~~~~~e   59 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKY-----------------------GLTTTTDNNE   59 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHH-----------------------CCEECSCHHH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHh-----------------------CCEEeCChHH
Confidence            689999999999999999999998    9999999999877653211                       12334444 5


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCC-eeeEecCC
Q 004891          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMP-LLEIVRTE  462 (725)
Q Consensus       384 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~-lveii~~~  462 (725)
                      .+++||+||+|+|  .....++++++.+.++++++|+|.++++++..+...+....++++.||+.|..... ...+++++
T Consensus        60 ~~~~aDvVilav~--~~~~~~v~~~l~~~l~~~~~vvs~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~~g~~~~~~~~  137 (247)
T 3gt0_A           60 VAKNADILILSIK--PDLYASIINEIKEIIKNDAIIVTIAAGKSIESTENAFNKKVKVVRVMPNTPALVGEGMSALCPNE  137 (247)
T ss_dssp             HHHHCSEEEECSC--TTTHHHHC---CCSSCTTCEEEECSCCSCHHHHHHHHCSCCEEEEEECCGGGGGTCEEEEEEECT
T ss_pred             HHHhCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEecCCCCHHHHHHHhCCCCcEEEEeCChHHHHcCceEEEEeCC
Confidence            6788999999997  66778888999988999999999999999988888777677899999999998887 56777888


Q ss_pred             CCCHHHHHHHHHHHHHcCCeeEEEcCCc-----chhhh-hhhHHHHHHHHH--HHHcCCCHHHHHHHH
Q 004891          463 RTSAQVILDLMTVGKIIKKVPVVVGNCT-----GFAVN-RAFFPYSQSARL--LVSLGVDVFRIDSAI  522 (725)
Q Consensus       463 ~t~~e~~~~~~~l~~~lGk~~v~v~d~~-----Gfi~n-Rl~~a~~~Ea~~--l~~~Gv~~~dID~~~  522 (725)
                      .++++.++.++++++.+|+ ++++.+..     +.... -.+..++.|++.  ....|+++++..+++
T Consensus       138 ~~~~~~~~~~~~l~~~~G~-~~~~~e~~~d~~~a~~g~gpa~~~~~~eal~~a~~~~Gl~~~~a~~~~  204 (247)
T 3gt0_A          138 MVTEKDLEDVLNIFNSFGQ-TEIVSEKLMDVVTSVSGSSPAYVYMIIEAMADAAVLDGMPRNQAYKFA  204 (247)
T ss_dssp             TCCHHHHHHHHHHHGGGEE-EEECCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhCCC-EEEeCHHHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            8999999999999999998 55554321     11110 111223345543  346699999988887

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.71  E-value=1.6e-17  Score=174.02  Aligned_cols=188  Identities=16%  Similarity=0.173  Sum_probs=134.3

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      .|+||+|||+|.||.+||.+|+++||+|++|||++++++...           +.|             .+...++ +.+
T Consensus         2 ~M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~-----------~~G-------------a~~a~s~~e~~   57 (300)
T 3obb_A            2 HMKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLV-----------AAG-------------ASAARSARDAV   57 (300)
T ss_dssp             -CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHH-----------HTT-------------CEECSSHHHHH
T ss_pred             CcCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHH-----------HcC-------------CEEcCCHHHHH
Confidence            368999999999999999999999999999999999877643           222             2334455 667


Q ss_pred             cCCCEEEEeccCChHHHHHHHHH--HHHhCCCCeEEEecCCCCChH---HHhcccCCCCcEEEEecCCCCCCC-------
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHVM-------  453 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~--l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~p~~~~-------  453 (725)
                      ++||+||.|+|++.++...++..  +.+.++++++|+.. ||..+.   ++++.+...    |++|.+.|..+       
T Consensus        58 ~~~dvv~~~l~~~~~v~~V~~~~~g~~~~~~~g~iiId~-sT~~p~~~~~~a~~~~~~----G~~~lDaPVsGg~~~A~~  132 (300)
T 3obb_A           58 QGADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLEC-STIAPTSARKIHAAARER----GLAMLDAPVSGGTAGAAA  132 (300)
T ss_dssp             TTCSEEEECCSCHHHHHHHHHSSSSSTTSCCC-CEEEEC-SCCCHHHHHHHHHHHHTT----TCEEEECCEESCHHHHHH
T ss_pred             hcCCceeecCCchHHHHHHHhchhhhhhcCCCCCEEEEC-CCCCHHHHHHHHHHHHHc----CCEEEecCCCCCHHHHHh
Confidence            89999999999877776665542  67778889988754 444443   333433322    56776655333       


Q ss_pred             -CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCC-cc---hhhhhhhH----HHHHHHHHHHHc-CCCHHHHHHHH-
Q 004891          454 -PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC-TG---FAVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI-  522 (725)
Q Consensus       454 -~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~G---fi~nRl~~----a~~~Ea~~l~~~-Gv~~~dID~~~-  522 (725)
                       .+.-++.|   +++++++++++++.+|+.++++++. .|   .++|.++.    ..+.|++.+.+. |++++.+-.++ 
T Consensus       133 G~L~imvGG---~~~~~~~~~p~l~~~g~~i~~~G~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~Gld~~~~~~vl~  209 (300)
T 3obb_A          133 GTLTFMVGG---DAEALEKARPLFEAMGRNIFHAGPDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMR  209 (300)
T ss_dssp             TCEEEEEES---CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             CCEEEEEeC---CHHHHHHHHHHHHHhCCCEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence             23334455   5999999999999999999999863 22   23454432    334589888876 89999998888 


Q ss_pred             HhcC
Q 004891          523 RSFG  526 (725)
Q Consensus       523 ~~~G  526 (725)
                      .+.+
T Consensus       210 ~~~~  213 (300)
T 3obb_A          210 RSSG  213 (300)
T ss_dssp             TSTT
T ss_pred             hCcc
Confidence            5443

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.69  E-value=3.8e-16  Score=164.93  Aligned_cols=164  Identities=15%  Similarity=0.167  Sum_probs=127.4

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-
Q 004891          306 RGVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (725)
Q Consensus       306 ~~~~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (725)
                      ..++||+|||+|.||.++|..|.++|+  +|++||++++.++.+.           +.|.++           ..++++ 
T Consensus        31 ~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~-----------~~G~~~-----------~~~~~~~   88 (314)
T 3ggo_A           31 LSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-----------DLGIID-----------EGTTSIA   88 (314)
T ss_dssp             CSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-----------HTTSCS-----------EEESCTT
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-----------HCCCcc-----------hhcCCHH
Confidence            346899999999999999999999999  9999999998876643           223211           234455 


Q ss_pred             c-cccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhcccCCCCcEEEEecCCCCC--------
Q 004891          383 S-EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAH--------  451 (725)
Q Consensus       383 ~-~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~p~~--------  451 (725)
                      + .+++||+||+|||  .....++++++.+.++++++|++.+|+..  +..+.+.+.  .+|++.||+.++.        
T Consensus        89 ~~~~~~aDvVilavp--~~~~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~--~~~v~~hPm~G~e~sG~~~A~  164 (314)
T 3ggo_A           89 KVEDFSPDFVMLSSP--VRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILG--KRFVGGHPIAGTEKSGVEYSL  164 (314)
T ss_dssp             GGGGGCCSEEEECSC--GGGHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHG--GGEECEEECCCCCCCSGGGCC
T ss_pred             HHhhccCCEEEEeCC--HHHHHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHHhcC--CCEEecCcccCCcccchhhhh
Confidence            4 6899999999999  44567889999999999999988776643  344544443  2899999987653        


Q ss_pred             ----CCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-Ccchhhh
Q 004891          452 ----VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTGFAVN  495 (725)
Q Consensus       452 ----~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~Gfi~n  495 (725)
                          .++.+.+++++.++++.++.++++++.+|+.++++++ ....++.
T Consensus       165 ~~Lf~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~~hD~~~a  213 (314)
T 3ggo_A          165 DNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSPELHDYVFG  213 (314)
T ss_dssp             TTTTTTCEEEECCCTTSCHHHHHHHHHHHHHTTCEEEECCHHHHHHHHH
T ss_pred             hhhhcCCEEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHH
Confidence                3467888888889999999999999999999998853 3333443

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.67  E-value=6.4e-17  Score=169.50  Aligned_cols=187  Identities=14%  Similarity=0.104  Sum_probs=127.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      +||||||+|.||.+||.+|+++||+|++||+++++++..           .+.|             ....+++ +.+++
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~G-------------~~~~~s~~e~~~~   61 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPL-----------TKLG-------------ATVVENAIDAITP   61 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTT-----------TTTT-------------CEECSSGGGGCCT
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH-----------HHcC-------------CeEeCCHHHHHhc
Confidence            589999999999999999999999999999999886543           2222             2334444 77899


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH---HHhcccCCCCcEEEEecCCCCCCCC-------eee
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHVMP-------LLE  457 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~p~~~~~-------lve  457 (725)
                      ||+||.|+|.+..+...+...+.+.++++.+++..+ +..+.   ++++.+...    |.+|.+.|..+.       .+.
T Consensus        62 ~dvvi~~l~~~~~~~~v~~~~~~~~~~~~~iiid~s-T~~p~~~~~~~~~~~~~----g~~~ldapVsGg~~~a~~g~l~  136 (297)
T 4gbj_A           62 GGIVFSVLADDAAVEELFSMELVEKLGKDGVHVSMS-TISPETSRQLAQVHEWY----GAHYVGAPIFARPEAVRAKVGN  136 (297)
T ss_dssp             TCEEEECCSSHHHHHHHSCHHHHHHHCTTCEEEECS-CCCHHHHHHHHHHHHHT----TCEEEECCEECCHHHHHHTCCE
T ss_pred             CCceeeeccchhhHHHHHHHHHHhhcCCCeEEEECC-CCChHHHHHHHHHHHhc----CCceecCCcCCCccccccccce
Confidence            999999999888777766677888888998887544 44443   333333221    445554443321       122


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcc-----hhhhhhh----HHHHHHHHHHHHc-CCCHHHHHHHH-HhcC
Q 004891          458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG-----FAVNRAF----FPYSQSARLLVSL-GVDVFRIDSAI-RSFG  526 (725)
Q Consensus       458 ii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G-----fi~nRl~----~a~~~Ea~~l~~~-Gv~~~dID~~~-~~~G  526 (725)
                      ++.+.  +++++++++++++.+|+.++++++.+|     -++|.++    ...+.|++.+.+. |++++++-.++ .+.+
T Consensus       137 im~gG--~~~~~~~~~~~l~~~g~~i~~~g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~Gld~~~~~~~l~~~~~  214 (297)
T 4gbj_A          137 ICLSG--NAGAKERIKPIVENFVKGVFDFGDDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKNGISRQSIYEMLTSTLF  214 (297)
T ss_dssp             EEEEE--CHHHHHHHHHHHHTTCSEEEECCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTTT
T ss_pred             eeccc--chhHHHHHHHHHHHhhCCeEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcc
Confidence            33332  689999999999999999999986555     2345443    3445699888866 99999998888 4443

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.66  E-value=1.6e-16  Score=167.89  Aligned_cols=191  Identities=12%  Similarity=0.096  Sum_probs=134.6

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cc
Q 004891          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (725)
Q Consensus       306 ~~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (725)
                      ..|+||+|||+|.||.++|..|+++|++|++||+++++++...+           .|             +..++++ +.
T Consensus        19 ~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~-----------~g-------------~~~~~~~~~~   74 (310)
T 3doj_A           19 SHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVE-----------HG-------------ASVCESPAEV   74 (310)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHH-----------TT-------------CEECSSHHHH
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-----------CC-------------CeEcCCHHHH
Confidence            45789999999999999999999999999999999988766431           12             3334455 56


Q ss_pred             ccCCCEEEEeccCChHHHHHHH--HHHHHhCCCCeEEEecCCCCChH--HHhcccC-CCCcEEEEecCCCC----CCCCe
Q 004891          385 FKDVDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA----HVMPL  455 (725)
Q Consensus       385 l~~aDlVIeavpe~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~-~~~r~ig~h~~~p~----~~~~l  455 (725)
                      +++||+||+|+|++..++..++  +++.+.++++++|++.+++.+..  .+.+.+. ....|+. ||....    ..+.+
T Consensus        75 ~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~-~pv~g~~~~a~~g~l  153 (310)
T 3doj_A           75 IKKCKYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVE-GPVSGSKKPAEDGQL  153 (310)
T ss_dssp             HHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHHHHHTCE
T ss_pred             HHhCCEEEEEcCCHHHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEe-CCCCCChhHHhcCCe
Confidence            7899999999997766665544  66778888999887654433322  2333222 2223433 322110    11233


Q ss_pred             eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcc------hhhhhhh---HHHHHHHHHHHHc-CCCHHHHHHHH-Hh
Q 004891          456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG------FAVNRAF---FPYSQSARLLVSL-GVDVFRIDSAI-RS  524 (725)
Q Consensus       456 veii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G------fi~nRl~---~a~~~Ea~~l~~~-Gv~~~dID~~~-~~  524 (725)
                      ..++.+   ++++++.++++++.+|+.++++++ +|      ++.|.++   .+.++|++.+.+. |++++++..++ .+
T Consensus       154 ~i~~gg---~~~~~~~~~~ll~~~g~~~~~~g~-~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~  229 (310)
T 3doj_A          154 IILAAG---DKALFEESIPAFDVLGKRSFYLGQ-VGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLG  229 (310)
T ss_dssp             EEEEEE---CHHHHHHHHHHHHHHEEEEEECSS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred             EEEEcC---CHHHHHHHHHHHHHhCCCEEEeCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence            445555   589999999999999999999986 55      4556553   3556899988876 89999999998 54


Q ss_pred             c
Q 004891          525 F  525 (725)
Q Consensus       525 ~  525 (725)
                      .
T Consensus       230 ~  230 (310)
T 3doj_A          230 A  230 (310)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.65  E-value=5.3e-16  Score=163.47  Aligned_cols=191  Identities=12%  Similarity=0.116  Sum_probs=132.7

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      .+||+|||+|.||.++|..|+++|++|++||+++++++...+           .|            ....++++ +.++
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g------------~~~~~~~~~e~~~   63 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLA-----------EG------------ACGAAASAREFAG   63 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TT------------CSEEESSSTTTTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-----------cC------------CccccCCHHHHHh
Confidence            468999999999999999999999999999999998776532           12            12214444 6679


Q ss_pred             CCCEEEEeccCChHHHHHHH--HHHHHhCCCCeEEEecCCCCChH--HHhcccC-CCCcEEEEecCCCC----CCCCeee
Q 004891          387 DVDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA----HVMPLLE  457 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~-~~~r~ig~h~~~p~----~~~~lve  457 (725)
                      +||+||+|+|++..++..++  +++.+.++++++|++.++..+..  .+.+.+. ....|+. ||....    ....+..
T Consensus        64 ~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~  142 (303)
T 3g0o_A           64 VVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLD-APVSGGAVKAAQGEMTV  142 (303)
T ss_dssp             TCSEEEECCSSHHHHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEE-CCEESCHHHHHTTCEEE
T ss_pred             cCCEEEEECCCHHHHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEe-CCCCCChhhhhcCCeEE
Confidence            99999999997666655544  56778888999887554433322  3333332 2233444 432111    1113344


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcc------hhhhhhh---HHHHHHHHHHHHc-CCCHHHHHHHH-Hhc
Q 004891          458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG------FAVNRAF---FPYSQSARLLVSL-GVDVFRIDSAI-RSF  525 (725)
Q Consensus       458 ii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G------fi~nRl~---~a~~~Ea~~l~~~-Gv~~~dID~~~-~~~  525 (725)
                      ++.+   ++++++.++++++.+|+.++++++.+|      ++.|.+.   .+.++|++.+.+. |++++++..++ .+.
T Consensus       143 ~~gg---~~~~~~~~~~ll~~~g~~~~~~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~  218 (303)
T 3g0o_A          143 MASG---SEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAA  218 (303)
T ss_dssp             EEEC---CHHHHHHHHHHHHHHEEEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTST
T ss_pred             EeCC---CHHHHHHHHHHHHHHCCCEEECCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence            4444   689999999999999999999987454      2334432   3457899888866 89999999998 543

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.64  E-value=2e-16  Score=167.23  Aligned_cols=188  Identities=14%  Similarity=0.086  Sum_probs=125.9

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC--hHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc
Q 004891          306 RGVRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN--SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (725)
Q Consensus       306 ~~~~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~--~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (725)
                      +.++||+|||+|.||.+||..|+++|+ +|++||++  ++..+...           +.|             +..+++.
T Consensus        22 ~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~-----------~~g-------------~~~~~~~   77 (312)
T 3qsg_A           22 SNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAE-----------ELG-------------VSCKASV   77 (312)
T ss_dssp             ---CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHH-----------HTT-------------CEECSCH
T ss_pred             CCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHH-----------HCC-------------CEEeCCH
Confidence            356799999999999999999999999 99999997  45544332           112             3334454


Q ss_pred             -ccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhcccC-C--CCcEEEEecCCCC--CCCC
Q 004891          383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-S--QDRIIGAHFFSPA--HVMP  454 (725)
Q Consensus       383 -~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~-~--~~r~ig~h~~~p~--~~~~  454 (725)
                       +.+++||+||+|||++...  +++.++.+.++++++|++.+|..+..  .+...+. .  ..+|+....+.|+  ....
T Consensus        78 ~e~~~~aDvVi~~vp~~~~~--~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~pv~g~~~~~~g~  155 (312)
T 3qsg_A           78 AEVAGECDVIFSLVTAQAAL--EVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAVMSAVKPHGHR  155 (312)
T ss_dssp             HHHHHHCSEEEECSCTTTHH--HHHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEEECSCSTTTGGG
T ss_pred             HHHHhcCCEEEEecCchhHH--HHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEeccccCCchhhcCC
Confidence             5678999999999977665  46788999999999988766554433  2222221 1  2234432222211  1225


Q ss_pred             eeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcch-----hhhhhhH----HHHHHHHHHHHc-CCCHHHHHHHH-H
Q 004891          455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF-----AVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI-R  523 (725)
Q Consensus       455 lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gf-----i~nRl~~----a~~~Ea~~l~~~-Gv~~~dID~~~-~  523 (725)
                      +..++.|+.+     +.++++++.+|+.++++++.+|.     ++|..+.    .+++|++.+.+. |++++-++ ++ .
T Consensus       156 l~i~vgg~~~-----~~~~~ll~~~g~~~~~~g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~-~l~~  229 (312)
T 3qsg_A          156 VPLVVDGDGA-----RRFQAAFTLYGCRIEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAAAEKMGLADRVLA-SLDA  229 (312)
T ss_dssp             SEEEEESTTH-----HHHHHHHHTTTCEEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH-HHHH
T ss_pred             EEEEecCChH-----HHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHh
Confidence            6667777632     88999999999999999875552     3344433    667899887776 89885454 45 4


Q ss_pred             hc
Q 004891          524 SF  525 (725)
Q Consensus       524 ~~  525 (725)
                      ++
T Consensus       230 ~~  231 (312)
T 3qsg_A          230 SF  231 (312)
T ss_dssp             HS
T ss_pred             cC
Confidence            44

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.64  E-value=5.3e-16  Score=162.86  Aligned_cols=185  Identities=18%  Similarity=0.165  Sum_probs=130.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      .+||+|||+|.||.++|..|+++|++|++||+++++++...+           .             .+..++++ +.++
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~   70 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAE-----------A-------------GATLADSVADVAA   70 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHH-----------T-------------TCEECSSHHHHTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-----------C-------------CCEEcCCHHHHHh
Confidence            358999999999999999999999999999999988766432           1             23445565 4566


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhcccC-CCCcEEEEecCCCC---CCCCeeeEec
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEIVR  460 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~-~~~r~ig~h~~~p~---~~~~lveii~  460 (725)
                       ||+||+|+|++..++ .+++++.+.++++++|++.+++.+..  .+.+.+. ...+|+....+.++   ..+.+..++.
T Consensus        71 -aDvvi~~vp~~~~~~-~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~g  148 (296)
T 3qha_A           71 -ADLIHITVLDDAQVR-EVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGAAAAARGELATMVG  148 (296)
T ss_dssp             -SSEEEECCSSHHHHH-HHHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEECCEESCHHHHHHTCEEEEEE
T ss_pred             -CCEEEEECCChHHHH-HHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHHHHhcCCccEEec
Confidence             999999999766554 45588888899999887655443332  3333332 22233332111111   1123445555


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEEEcCCcc------hhhhhhh---HHHHHHHHHHHHc-CCCHHHH------HHHH
Q 004891          461 TERTSAQVILDLMTVGKIIKKVPVVVGNCTG------FAVNRAF---FPYSQSARLLVSL-GVDVFRI------DSAI  522 (725)
Q Consensus       461 ~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G------fi~nRl~---~a~~~Ea~~l~~~-Gv~~~dI------D~~~  522 (725)
                      +   ++++++.++++++.+|+.++++++ +|      ++.|.+.   ...++|++.+.+. |++++++      ..++
T Consensus       149 g---~~~~~~~~~~ll~~~g~~~~~~g~-~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~i  222 (296)
T 3qha_A          149 A---DREVYERIKPAFKHWAAVVIHAGE-PGAGTRMKLARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDAL  222 (296)
T ss_dssp             C---CHHHHHHHHHHHHHHEEEEEEEES-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             C---CHHHHHHHHHHHHHHcCCeEEcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhcchHHHH
Confidence            5   589999999999999999999976 44      4445543   3457899988876 8999999      7777

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.63  E-value=1.4e-16  Score=166.63  Aligned_cols=186  Identities=13%  Similarity=0.124  Sum_probs=130.1

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      |+||+|||+|.||.++|..|+++|++|++||+++++++...+           .             .+..+++. +.++
T Consensus         1 M~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~   56 (287)
T 3pdu_A            1 MTTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVA-----------L-------------GARQASSPAEVCA   56 (287)
T ss_dssp             CCCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHH-----------H-------------TCEECSCHHHHHH
T ss_pred             CCeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------C-------------CCeecCCHHHHHH
Confidence            468999999999999999999999999999999998776532           1             13334455 5678


Q ss_pred             CCCEEEEeccCChHHHHHHH--HHHHHhCCCCeEEEecCCCCChH--HHhcccCCCCcEEEEecCCCCCCC--------C
Q 004891          387 DVDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHVM--------P  454 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~~~~r~ig~h~~~p~~~~--------~  454 (725)
                      +||+||+|+|++..++..++  +++.+.++++++|++.+++.+..  .+.+.+...    |.||+++|..+        .
T Consensus        57 ~advvi~~v~~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~----g~~~~~~pv~g~~~~a~~g~  132 (287)
T 3pdu_A           57 ACDITIAMLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTAR----GGRFLEAPVSGTKKPAEDGT  132 (287)
T ss_dssp             HCSEEEECCSSHHHHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHT----TCEEEECCEECCHHHHHHTC
T ss_pred             cCCEEEEEcCCHHHHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHc----CCEEEECCccCCHHHHhcCC
Confidence            99999999997666655544  66778888898887554433322  233322211    23443333221        2


Q ss_pred             eeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcc------hhhhhhh---HHHHHHHHHHHHc-CCCHHHHHHHH-H
Q 004891          455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG------FAVNRAF---FPYSQSARLLVSL-GVDVFRIDSAI-R  523 (725)
Q Consensus       455 lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G------fi~nRl~---~a~~~Ea~~l~~~-Gv~~~dID~~~-~  523 (725)
                      +..++.+   ++++++.++++++.+|++++++++ +|      ++.|.++   ...++|++.+.+. |++++++..++ .
T Consensus       133 l~~~~gg---~~~~~~~~~~ll~~~g~~~~~~g~-~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~  208 (287)
T 3pdu_A          133 LIILAAG---DQSLFTDAGPAFAALGKKCLHLGE-VGQGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDA  208 (287)
T ss_dssp             EEEEEEE---CHHHHHHTHHHHHHHEEEEEECSS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             EEEEEeC---CHHHHHHHHHHHHHhCCCEEEcCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            2333333   689999999999999999999976 44      2335443   3456899888866 89999999998 5


Q ss_pred             hc
Q 004891          524 SF  525 (725)
Q Consensus       524 ~~  525 (725)
                      +.
T Consensus       209 ~~  210 (287)
T 3pdu_A          209 GA  210 (287)
T ss_dssp             ST
T ss_pred             cc
Confidence            44

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.63  E-value=5.3e-16  Score=162.23  Aligned_cols=187  Identities=15%  Similarity=0.102  Sum_probs=132.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      +||+|||+|.||.++|..|+++|++|++||+++++++...+           .             .+..++++ +.+++
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~~   57 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAA-----------L-------------GAERAATPCEVVES   57 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHH-----------T-------------TCEECSSHHHHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------C-------------CCeecCCHHHHHhc
Confidence            58999999999999999999999999999999998766532           1             23445555 56788


Q ss_pred             CCEEEEeccCChHHHHHHH--HHHHHhCCCCeEEEecCCCCChH---HHhcccC-CCCcEEEEecCCCCC----CCCeee
Q 004891          388 VDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN---IVGEKTS-SQDRIIGAHFFSPAH----VMPLLE  457 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~-~~~r~ig~h~~~p~~----~~~lve  457 (725)
                      ||+||+|+|++..++..++  +++.+.++++++|++. |+..+.   .+.+.+. ...+|+. ||+....    ...+..
T Consensus        58 aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vi~~-st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~  135 (287)
T 3pef_A           58 CPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDM-STVDPATSQRIGVAVVAKGGRFLE-APVSGSKKPAEDGTLII  135 (287)
T ss_dssp             CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEEC-SCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHHHHHTCEEE
T ss_pred             CCEEEEEcCCHHHHHHHHcCcchHhhcCCCCCEEEeC-CCCCHHHHHHHHHHHHHhCCEEEE-CCCcCCHHHHhcCCEEE
Confidence            9999999997767665554  7788889999988765 444433   2223222 2233444 3322111    123344


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcc------hhhhhhh---HHHHHHHHHHHHc-CCCHHHHHHHH-Hhc
Q 004891          458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG------FAVNRAF---FPYSQSARLLVSL-GVDVFRIDSAI-RSF  525 (725)
Q Consensus       458 ii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G------fi~nRl~---~a~~~Ea~~l~~~-Gv~~~dID~~~-~~~  525 (725)
                      ++.+   ++++++.++++++.+|+.++++++ +|      ++.|-+.   ...++|++.+.+. |++++++..++ .+.
T Consensus       136 ~~gg---~~~~~~~~~~ll~~~g~~~~~~g~-~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~  210 (287)
T 3pef_A          136 LAAG---DRNLYDEAMPGFEKMGKKIIHLGD-VGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGA  210 (287)
T ss_dssp             EEEE---CHHHHHHHHHHHHHHEEEEEECSS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHST
T ss_pred             EEeC---CHHHHHHHHHHHHHhCCCeEEeCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence            5544   589999999999999999999976 44      2334332   3467899988876 89999999998 544

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=99.62  E-value=9.6e-16  Score=159.25  Aligned_cols=210  Identities=10%  Similarity=-0.033  Sum_probs=138.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcE-EEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V-~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      +||+|||+|.||.+||..|+++ ++| .+||++++++++..+.                      ++.  .++++ +.++
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~----------------------~g~--~~~~~~~~~~   57 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEV----------------------YGG--KAATLEKHPE   57 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHH----------------------TCC--CCCSSCCCCC
T ss_pred             ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHH----------------------cCC--ccCCHHHHHh
Confidence            5899999999999999999988 999 5999999887664321                      112  23444 4578


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecC----CCCCC-CCeeeEecC
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFF----SPAHV-MPLLEIVRT  461 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~----~p~~~-~~lveii~~  461 (725)
                      +||+||+|+|++.  ..+++.++.   .++++|++.+++.+.+.+...     .+.+.|+.    +++.. ....++...
T Consensus        58 ~~DvVilav~~~~--~~~v~~~l~---~~~~ivi~~s~~~~~~~l~~~-----~~~~~~p~~~~~g~~~~~~~~~~~~~~  127 (276)
T 2i76_A           58 LNGVVFVIVPDRY--IKTVANHLN---LGDAVLVHCSGFLSSEIFKKS-----GRASIHPNFSFSSLEKALEMKDQIVFG  127 (276)
T ss_dssp             ---CEEECSCTTT--HHHHHTTTC---CSSCCEEECCSSSCGGGGCSS-----SEEEEEECSCC--CTTGGGCGGGCCEE
T ss_pred             cCCEEEEeCChHH--HHHHHHHhc---cCCCEEEECCCCCcHHHHHHh-----hccccchhhhcCCCchhHHHhCCCeEE
Confidence            9999999999654  567766654   677888766556676655433     45667743    32221 112222222


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEEcCCc--------chhhhhhhHHHHHHHHHHHH-cCCCHH----------HHHHHH
Q 004891          462 ERTSAQVILDLMTVGKIIKKVPVVVGNCT--------GFAVNRAFFPYSQSARLLVS-LGVDVF----------RIDSAI  522 (725)
Q Consensus       462 ~~t~~e~~~~~~~l~~~lGk~~v~v~d~~--------Gfi~nRl~~a~~~Ea~~l~~-~Gv~~~----------dID~~~  522 (725)
                      ...+++.++.++++++.+|+.++++++..        ++..| ++..++.++..++. .|++.+          .++.++
T Consensus       128 ~~~~~~~~~~~~~l~~~lG~~~~~v~~~~~~~~~~~~~l~~n-~~~~~~~~a~~~~~~~Gl~~~~a~~~~l~~~~~~~~~  206 (276)
T 2i76_A          128 LEGDERGLPIVKKIAEEISGKYFVIPSEKKKAYHLAAVIASN-FPVALAYLSKRIYTLLGLDEPELLIHTLMKGVADNIK  206 (276)
T ss_dssp             ECCCTTTHHHHHHHHHHHCSCEEECCGGGHHHHHHHHHHHHT-THHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             EEeChHHHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence            22356679999999999999999887421        34334 65667778877777 588544          566666


Q ss_pred             -Hh-cCCCccHHHHHHhhchHHHHHHHHHHHhhC
Q 004891          523 -RS-FGLPIGPFQLLDLAGYGVAAATSKEFDKAF  554 (725)
Q Consensus       523 -~~-~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~  554 (725)
                       .+ .+.++||++..|..+++.....++.+.+++
T Consensus       207 ~~gp~~~~tgP~~r~D~~t~~~~l~~l~~~~~~~  240 (276)
T 2i76_A          207 KMRVECSLTGPVKRGDWQVVEEERREYEKIFGNT  240 (276)
T ss_dssp             HSCGGGGCCSHHHHTCHHHHHHHHHHHHHHHSCC
T ss_pred             hcChHhhCCCCcccCCHHHHHHHHHHHhccCccH
Confidence             34 556789999999999999999998875544

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.61  E-value=2.1e-15  Score=160.09  Aligned_cols=187  Identities=16%  Similarity=0.162  Sum_probs=130.1

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      .++||+|||+|.||.++|..|+++|++|++||+++++++...+           .|             +..++++ +.+
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~-----------~g-------------~~~~~~~~e~~   85 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAA-----------LG-------------ATIHEQARAAA   85 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHT-----------TT-------------CEEESSHHHHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHH-----------CC-------------CEeeCCHHHHH
Confidence            3569999999999999999999999999999999998766431           12             3445555 567


Q ss_pred             cCCCEEEEeccCChHHHHHHHH-HHHHhCCCCeEEEecCCCCChH--HHhcccCCCCcEEEEecCCCCCC--------CC
Q 004891          386 KDVDMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHV--------MP  454 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~-~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~~~~r~ig~h~~~p~~~--------~~  454 (725)
                      ++||+||+|+|++..++..+.. ++.+.++++++|++.+++.+..  .+.+.+...    |.||++.|..        ++
T Consensus        86 ~~aDvVi~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~----g~~~~~~pv~g~~~~a~~g~  161 (320)
T 4dll_A           86 RDADIVVSMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGAL----GIAHLDTPVSGGTVGAEQGT  161 (320)
T ss_dssp             TTCSEEEECCSSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHT----TCEEEECCEECHHHHHHHTC
T ss_pred             hcCCEEEEECCCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHc----CCEEEeCCCcCCHhHHhcCC
Confidence            8999999999976666544432 6777788888887654443322  333332211    2344333222        23


Q ss_pred             eeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-Ccc----hhhhhhh---HHHHHHHHHHHHc-CCCHHHHHHHH-Hh
Q 004891          455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTG----FAVNRAF---FPYSQSARLLVSL-GVDVFRIDSAI-RS  524 (725)
Q Consensus       455 lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G----fi~nRl~---~a~~~Ea~~l~~~-Gv~~~dID~~~-~~  524 (725)
                      +..++.|   ++++++.++++++.+ +.++++++ ..|    ++.|-+.   .+.++|++.+.+. |++++++..++ .+
T Consensus       162 l~i~~gg---~~~~~~~~~~ll~~~-~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~  237 (320)
T 4dll_A          162 LVIMAGG---KPADFERSLPLLKVF-GRATHVGPHGSGQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVKEAITGG  237 (320)
T ss_dssp             EEEEEES---CHHHHHHHHHHHHHH-EEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHTTS
T ss_pred             eeEEeCC---CHHHHHHHHHHHHhc-CCEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcc
Confidence            3445554   589999999999999 88888876 222    3334432   3467899988876 89999999998 54


Q ss_pred             c
Q 004891          525 F  525 (725)
Q Consensus       525 ~  525 (725)
                      .
T Consensus       238 ~  238 (320)
T 4dll_A          238 F  238 (320)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=99.60  E-value=2.9e-15  Score=149.26  Aligned_cols=159  Identities=9%  Similarity=0.014  Sum_probs=124.8

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      +.+||+|||+|.||+++|..|.++|++|++||+.                                          +.++
T Consensus         5 ~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~------------------------------------------~~~~   42 (232)
T 3dfu_A            5 PRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP------------------------------------------EDIR   42 (232)
T ss_dssp             CCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG------------------------------------------GGGG
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH------------------------------------------HHhc
Confidence            3468999999999999999999999999999983                                          1245


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCCH
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA  466 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~  466 (725)
                      +||  |.|||.+  ...+++.++.+.++++++|++.+++.+...+........+|++.||....     ..++...  ++
T Consensus        43 ~aD--ilavP~~--ai~~vl~~l~~~l~~g~ivvd~sgs~~~~vl~~~~~~g~~fvg~HPm~g~-----~~~i~a~--d~  111 (232)
T 3dfu_A           43 DFE--LVVIDAH--GVEGYVEKLSAFARRGQMFLHTSLTHGITVMDPLETSGGIVMSAHPIGQD-----RWVASAL--DE  111 (232)
T ss_dssp             GCS--EEEECSS--CHHHHHHHHHTTCCTTCEEEECCSSCCGGGGHHHHHTTCEEEEEEEEETT-----EEEEEES--SH
T ss_pred             cCC--EEEEcHH--HHHHHHHHHHHhcCCCCEEEEECCcCHHHHHHHHHhCCCcEEEeeeCCCC-----ceeeeCC--CH
Confidence            688  8999965  56788899999999999998766566655455444556789999987432     1233322  68


Q ss_pred             HHHHHHHHHHHHcCCeeEEEc--CCcch----hhhhhhHHHHHHHHHHH---HcCC-CHHHH
Q 004891          467 QVILDLMTVGKIIKKVPVVVG--NCTGF----AVNRAFFPYSQSARLLV---SLGV-DVFRI  518 (725)
Q Consensus       467 e~~~~~~~l~~~lGk~~v~v~--d~~Gf----i~nRl~~a~~~Ea~~l~---~~Gv-~~~dI  518 (725)
                      +.++.++++++.+|.+++.+.  +.++|    ..++.+.++.++|..++   ++|+ +++|+
T Consensus       112 ~a~~~l~~L~~~lG~~vv~~~~~~hd~~~AAvsh~nhLv~L~~~A~~ll~~~~~g~a~~~d~  173 (232)
T 3dfu_A          112 LGETIVGLLVGELGGSIVEIADDKRAQLAAALTYAGFLSTLQRDASYFLDEFLGDPDVTSDI  173 (232)
T ss_dssp             HHHHHHHHHHHHTTCEECCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCEEEEeCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhh
Confidence            899999999999999999995  45566    44677788999999999   8897 88883

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=99.58  E-value=1.7e-14  Score=150.64  Aligned_cols=188  Identities=13%  Similarity=0.040  Sum_probs=133.5

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       308 ~~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      |+||+|||+ |.||.++|..|+++|++|++||++++.++...+           .|             +..++..+.++
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~-----------~g-------------~~~~~~~~~~~   66 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQG-----------MG-------------IPLTDGDGWID   66 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHH-----------TT-------------CCCCCSSGGGG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHh-----------cC-------------CCcCCHHHHhc
Confidence            579999999 999999999999999999999999988765421           12             12233336788


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCC--------CCCe---
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH--------VMPL---  455 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~--------~~~l---  455 (725)
                      +||+||+|+|+  ....++++++.+.++++++|++.+++.++..+.+ .....++++.||+.|..        ....   
T Consensus        67 ~aDvVi~av~~--~~~~~v~~~l~~~l~~~~ivv~~s~~~~~~~l~~-~~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l~  143 (286)
T 3c24_A           67 EADVVVLALPD--NIIEKVAEDIVPRVRPGTIVLILDAAAPYAGVMP-ERADITYFIGHPCHPPLFNDETDPAARTDYHG  143 (286)
T ss_dssp             TCSEEEECSCH--HHHHHHHHHHGGGSCTTCEEEESCSHHHHHTCSC-CCTTSEEEEEEECCSCSSCCCCSHHHHTCSSS
T ss_pred             CCCEEEEcCCc--hHHHHHHHHHHHhCCCCCEEEECCCCchhHHHHh-hhCCCeEEecCCCCccccccccchhhccCccc
Confidence            99999999994  4468888999998999999988666666655554 33335799999998766        2222   


Q ss_pred             -----eeEecCCCCCHHHHHHHHHHHHHcCC---eeEEEcCC-cch----hhhhhhHHHH---HHHHH-HHHc-CCCHHH
Q 004891          456 -----LEIVRTERTSAQVILDLMTVGKIIKK---VPVVVGNC-TGF----AVNRAFFPYS---QSARL-LVSL-GVDVFR  517 (725)
Q Consensus       456 -----veii~~~~t~~e~~~~~~~l~~~lGk---~~v~v~d~-~Gf----i~nRl~~a~~---~Ea~~-l~~~-Gv~~~d  517 (725)
                           ..++.+..++++.++.++++++.+|.   .++++++. .+.    +.|-...+++   .|++. .... |+++++
T Consensus       144 ~~~~~~~i~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~v~~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~Gl~~~~  223 (286)
T 3c24_A          144 GIAKQAIVCALMQGPEEHYAIGADICETMWSPVTRTHRVTTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQA  223 (286)
T ss_dssp             SSSCEEEEEEEEESCTHHHHHHHHHHHHHTCSEEEEEECCHHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred             ccccceeeeeccCCCHHHHHHHHHHHHHhcCCcceEEEeChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence                 23333334678999999999999999   78888632 222    2343333332   34443 3333 898888


Q ss_pred             HHHHH
Q 004891          518 IDSAI  522 (725)
Q Consensus       518 ID~~~  522 (725)
                      +-.++
T Consensus       224 ~~~~~  228 (286)
T 3c24_A          224 ALDFM  228 (286)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77665

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=99.57  E-value=2e-14  Score=152.66  Aligned_cols=189  Identities=13%  Similarity=0.066  Sum_probs=135.1

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCC----CcEEEEeCChH--HHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccccc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSE--YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  380 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G----~~V~~~d~~~e--~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~  380 (725)
                      +++||+|||+|.||.+||..|+++|    ++|++||++++  +++...           +.|             +..++
T Consensus        21 ~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~-----------~~G-------------~~~~~   76 (322)
T 2izz_A           21 QSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALR-----------KMG-------------VKLTP   76 (322)
T ss_dssp             -CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHH-----------HHT-------------CEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHH-----------HcC-------------CEEeC
Confidence            3458999999999999999999999    89999999986  555432           112             23333


Q ss_pred             Cc-ccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCC---CCcEEEEecCCCCCCCCee
Q 004891          381 DY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSS---QDRIIGAHFFSPAHVMPLL  456 (725)
Q Consensus       381 ~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~---~~r~ig~h~~~p~~~~~lv  456 (725)
                      +. +.+++||+||+|||  .....+++.++.+.++++++|++.++++++..+.+.+..   ..++++.|+..|.......
T Consensus        77 ~~~e~~~~aDvVilav~--~~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l~~~l~~~~~~~~vv~~~p~~p~~~~~g~  154 (322)
T 2izz_A           77 HNKETVQHSDVLFLAVK--PHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGA  154 (322)
T ss_dssp             CHHHHHHHCSEEEECSC--GGGHHHHHHHHGGGCCTTCEEEECCTTCCHHHHHHHHHTTSSCCEEEEEECCGGGGGTCEE
T ss_pred             ChHHHhccCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHhhcCCCCeEEEEeCCcHHHHcCCe
Confidence            44 56788999999999  567778889999889899999988888888776655432   4579999998888776655


Q ss_pred             eEe-cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCc----ch--hhhhhhHHHHHHHHH--HHHcCCCHHHHHHHH
Q 004891          457 EIV-RTERTSAQVILDLMTVGKIIKKVPVVVGNCT----GF--AVNRAFFPYSQSARL--LVSLGVDVFRIDSAI  522 (725)
Q Consensus       457 eii-~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~----Gf--i~nRl~~a~~~Ea~~--l~~~Gv~~~dID~~~  522 (725)
                      .++ .++.++++.++.++++++.+|..+++..+.-    +.  ..+.+++.+ .|++.  ....|+++++.-.++
T Consensus       155 ~v~~~g~~~~~~~~~~v~~ll~~~G~~~~~~e~~~~~~~a~~g~gpa~~~~~-~eala~a~~~~Gl~~~~a~~l~  228 (322)
T 2izz_A          155 TVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAFTA-LDALADGGVKMGLPRRLAVRLG  228 (322)
T ss_dssp             EEEEECTTCCHHHHHHHHHHHHTTEEEEECCGGGHHHHHHHTTTHHHHHHHH-HHHHHHHHHHTTCCHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHhCCCEEEeCHHHHHHHHHHhcCHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHH
Confidence            555 5777789999999999999997654432210    10  112232322 34332  345588887766665

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=99.55  E-value=1.4e-14  Score=161.30  Aligned_cols=205  Identities=13%  Similarity=0.076  Sum_probs=143.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHH--HhhcCcccccCc-cc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKAN--NALKMLKGVLDY-SE  384 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~--~~~~~i~~~~~~-~~  384 (725)
                      .+||+|||+|.||.++|..|+++|++|++||+++++++...+...    ...+.| + .+...  ...+++.+++++ ++
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~----~i~e~g-l-~~~l~~~~~~~~l~~ttd~~~a   81 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGV----PIHEPG-L-KEVIARNRSAGRLRFSTDIEAA   81 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCC----SSCCTT-H-HHHHHHHHHTTCEEEECCHHHH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCC----CcCCCC-H-HHHHHHhcccCCEEEECCHHHH
Confidence            368999999999999999999999999999999998877543100    000000 0 00001  012467788888 57


Q ss_pred             ccCCCEEEEeccC--------ChHHHHHHHHHHHHhCCCCeEEEecCCCCChH---HHhcccC----CC---CcEEEEec
Q 004891          385 FKDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTS----SQ---DRIIGAHF  446 (725)
Q Consensus       385 l~~aDlVIeavpe--------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~----~~---~r~ig~h~  446 (725)
                      +++||+||+|||+        |+....+++++|.++++++++|++ .|++++.   .+.+.+.    .+   ..+  .+.
T Consensus        82 ~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~-~STv~~gt~~~l~~~l~~~~~~g~~~~~~--~v~  158 (478)
T 2y0c_A           82 VAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVD-KSTVPVGTAERVRAAVAEELAKRGGDQMF--SVV  158 (478)
T ss_dssp             HHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEE-CSCCCTTHHHHHHHHHHHHHHHTTCCCCE--EEE
T ss_pred             hhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEE-eCCcCCCchHHHHHHHHHHhcCCCCCccE--EEE
Confidence            8999999999997        458889999999999999998864 4576553   2222111    11   222  235


Q ss_pred             CCCCCCCCee---------eEecCCCCCH----HHHHHHHHHHHHcCC--eeEEEcC-----Ccchhhhhhh---HHHHH
Q 004891          447 FSPAHVMPLL---------EIVRTERTSA----QVILDLMTVGKIIKK--VPVVVGN-----CTGFAVNRAF---FPYSQ  503 (725)
Q Consensus       447 ~~p~~~~~lv---------eii~~~~t~~----e~~~~~~~l~~~lGk--~~v~v~d-----~~Gfi~nRl~---~a~~~  503 (725)
                      ++|....+..         .++.|.. ++    ++.+.+.++++.+++  .++++.+     ..+++.|.+.   .+++|
T Consensus       159 ~~Pe~~~eG~~~~~~~~p~~iviG~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~n  237 (478)
T 2y0c_A          159 SNPEFLKEGAAVDDFTRPDRIVIGCD-DDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMN  237 (478)
T ss_dssp             ECCCCCCTTCHHHHHHSCSCEEEECC-SSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EChhhhcccceeeccCCCCEEEEEEC-CCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666665543         3555543 34    789999999998875  5677654     4567778765   57889


Q ss_pred             HHHHHHHc-CCCHHHHHHHH
Q 004891          504 SARLLVSL-GVDVFRIDSAI  522 (725)
Q Consensus       504 Ea~~l~~~-Gv~~~dID~~~  522 (725)
                      |+..+.+. |++++++..++
T Consensus       238 E~~~la~~~Gid~~~v~~~i  257 (478)
T 2y0c_A          238 ELANLADRFGADIEAVRRGI  257 (478)
T ss_dssp             HHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHH
Confidence            99988877 89999999887

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=99.55  E-value=1.8e-15  Score=157.13  Aligned_cols=94  Identities=23%  Similarity=0.315  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCC-CCCCCHHH
Q 004891          623 EIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPSRFL  701 (725)
Q Consensus       623 ~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~~l  701 (725)
                      .++||++.++++||+.++++|+  ++++||.++..|+|+|++..|||+++|.+|+|++.+.++.+++.+++ +|.|+++|
T Consensus       174 fi~Nrll~~~~~EA~~l~~~Gv--~~e~id~~~~~g~g~~~~~~GP~~l~D~~Gld~~~~~~~~l~~~~~~~~~~~~~~l  251 (293)
T 1zej_A          174 SLVNRFNAAVLSEASRMIEEGV--RAEDVDRVWKHHLGLLYTLFGPLGNLDYIGLDVAYYASLYLYKRFGDEKFKPPEWL  251 (293)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTC--CHHHHHHHHHTTHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCGGGSCCHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHhcCCCCCCCCCHHHHHHHhchHHHHHHHHHHHHHcCCCcCCCCHHH
Confidence            7999999999999999999998  79999999999999988888999999999999999999999999987 89999999


Q ss_pred             HHHH-------HcCCCCCCCCCCC
Q 004891          702 EERA-------TKGIPLSAPVSSS  718 (725)
Q Consensus       702 ~~~~-------~~g~gf~~~~~~~  718 (725)
                      ++|+       |+|+|||+|++..
T Consensus       252 ~~~v~~G~lG~Ktg~Gfy~y~~~~  275 (293)
T 1zej_A          252 QEKIKKGEVGVKAGKGIYEYGPKA  275 (293)
T ss_dssp             HHHHHTTCCBGGGTBSSSBCCTTH
T ss_pred             HHHHHCCCCccccCCEeeecCcch
Confidence            9999       6899999996543

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.52  E-value=1.7e-13  Score=144.95  Aligned_cols=193  Identities=12%  Similarity=0.058  Sum_probs=127.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCC-CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccc-cCcccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDYSEF  385 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~l  385 (725)
                      ++||+|||+|.||.++|..|+++| ++|++||++++..++..+..    +...+.|             + .+ +..+.+
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~----~~~~~~g-------------~-~~~s~~e~~   85 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALR----ARAAELG-------------V-EPLDDVAGI   85 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHH----HHHHHTT-------------C-EEESSGGGG
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHH----HHHHHCC-------------C-CCCCHHHHH
Confidence            468999999999999999999999 99999999984222111111    1111222             2 23 334678


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhcccC-CCCcEEEEecCCCC--CCCCeeeEec
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA--HVMPLLEIVR  460 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~-~~~r~ig~h~~~p~--~~~~lveii~  460 (725)
                      ++||+||+|||++...  +.+.++.+.++++++|++.+++.+.+  .+.+.+. ...+|+....+.|.  ....+..++.
T Consensus        86 ~~aDvVi~avp~~~~~--~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~~a~~g~l~i~vg  163 (317)
T 4ezb_A           86 ACADVVLSLVVGAATK--AVAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARVPPYAEKVPILVA  163 (317)
T ss_dssp             GGCSEEEECCCGGGHH--HHHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCSTTTGGGSEEEEE
T ss_pred             hcCCEEEEecCCHHHH--HHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCchhhcCCEEEEEe
Confidence            9999999999966655  34588888999999888655443332  3333332 22345543333332  2335565666


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEEEcCCcc------hhhhhh---hHHHHHHHHHHHHc-CCCHHHHHHHHHhc
Q 004891          461 TERTSAQVILDLMTVGKIIKKVPVVVGNCTG------FAVNRA---FFPYSQSARLLVSL-GVDVFRIDSAIRSF  525 (725)
Q Consensus       461 ~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G------fi~nRl---~~a~~~Ea~~l~~~-Gv~~~dID~~~~~~  525 (725)
                      |+.   +  +.++++++.+|+.++++++.+|      ++.|-+   ..+.++|++.+.+. |++++.++.+..+.
T Consensus       164 g~~---~--~~~~~ll~~~g~~v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~~E~~~la~~~Gid~~~~~~l~~~~  233 (317)
T 4ezb_A          164 GRR---A--VEVAERLNALGMNLEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAGVTERILDSVQETF  233 (317)
T ss_dssp             STT---H--HHHHHHHHTTTCEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred             CCh---H--HHHHHHHHHhCCCeEEeCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence            653   2  8899999999999999987555      233432   35667899988876 89996666655443

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.52  E-value=3.4e-14  Score=149.79  Aligned_cols=187  Identities=11%  Similarity=0.030  Sum_probs=128.7

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      .++||+|||+|.||.+||..|+++|++|++||+++++++...+           .|             +...+++ +.+
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~~~e~~   63 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVA-----------AG-------------AHLCESVKAAL   63 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHH-----------HT-------------CEECSSHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------CC-------------CeecCCHHHHH
Confidence            3578999999999999999999999999999999998776432           12             2234444 567


Q ss_pred             cCCCEEEEeccCChHHHHHHHH--HHHHhCCCCeEEEecCCCCChH--HHhcccC-CCCcEEEEecCCC-CCC--CCeee
Q 004891          386 KDVDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSP-AHV--MPLLE  457 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~-~~~r~ig~h~~~p-~~~--~~lve  457 (725)
                      ++||+||+|+|++..++.. +.  .+... .++++|++.+++.+..  .+.+.+. ...+|+..+.+.+ +..  ..+..
T Consensus        64 ~~aDvVi~~vp~~~~~~~v-~~~~~l~~~-~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~~~~~~~~~i  141 (306)
T 3l6d_A           64 SASPATIFVLLDNHATHEV-LGMPGVARA-LAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHS  141 (306)
T ss_dssp             HHSSEEEECCSSHHHHHHH-HTSTTHHHH-TTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGGGTTCTTCEE
T ss_pred             hcCCEEEEEeCCHHHHHHH-hcccchhhc-cCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccCcccccCCceEE
Confidence            8899999999976655544 44  56554 5777776544433322  3333332 3335655433221 111  12333


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeeEEE--cC--Ccchhhhhhh---HHHHHHHHHHHHc-CCCHHHHHHHH
Q 004891          458 IVRTERTSAQVILDLMTVGKIIKKVPVVV--GN--CTGFAVNRAF---FPYSQSARLLVSL-GVDVFRIDSAI  522 (725)
Q Consensus       458 ii~~~~t~~e~~~~~~~l~~~lGk~~v~v--~d--~~Gfi~nRl~---~a~~~Ea~~l~~~-Gv~~~dID~~~  522 (725)
                      ++.|   +++++++++++++.+|++++++  ++  ..|...+.++   ...++|++.+.+. |++++++..++
T Consensus       142 ~~gg---~~~~~~~~~~ll~~lg~~~~~~~~g~~~g~g~~~k~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~  211 (306)
T 3l6d_A          142 IHTG---DREAFEQHRALLEGLAGHTVFLPWDEALAFATVLHAHAFAAMVTFFEAVGAGDRFGLPVSKTARLL  211 (306)
T ss_dssp             EEEE---CHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             EEcC---CHHHHHHHHHHHHHhcCCEEEecCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            4444   5999999999999998899999  75  5567777332   3556799888866 89999999888

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=99.52  E-value=4.7e-14  Score=155.95  Aligned_cols=206  Identities=17%  Similarity=0.129  Sum_probs=137.3

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHC-CC-cEEEEeCChH----HHHHHHHHH------HHHHHhhHHcCCCCHHHHHHhhc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILN-NI-YVVLKEVNSE----YLLKGIKTI------EANVRGLVTRGKLTQDKANNALK  374 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~-G~-~V~~~d~~~e----~~~~~~~~i------~~~l~~~~~~g~~~~~~~~~~~~  374 (725)
                      +++||+|||+|.||.++|..|+++ |+ +|++||++++    +++...+..      +..++.++++        ....+
T Consensus        17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~--------~~~~g   88 (478)
T 3g79_A           17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGK--------VVKAG   88 (478)
T ss_dssp             SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHH--------HHHTT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHh--------hcccC
Confidence            467999999999999999999999 99 9999999999    776643210      0001111100        00135


Q ss_pred             CcccccCcccccCCCEEEEeccCCh----------HHHHHHHHHHHHhCCCCeEEEecCCCCChH---HHhc-----ccC
Q 004891          375 MLKGVLDYSEFKDVDMVIEAVIESV----------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVGE-----KTS  436 (725)
Q Consensus       375 ~i~~~~~~~~l~~aDlVIeavpe~~----------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~-----~~~  436 (725)
                      ++.++++.+++++||+||+|||++.          .......+.+.++++++++|+. .||+++.   .+..     ...
T Consensus        89 ~l~~ttd~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~-~STv~pgtt~~v~~~ile~~~g  167 (478)
T 3g79_A           89 KFECTPDFSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVL-ESTITPGTTEGMAKQILEEESG  167 (478)
T ss_dssp             CEEEESCGGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEE-CSCCCTTTTTTHHHHHHHHHHC
T ss_pred             CeEEeCcHHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEE-eCCCChHHHHHHHHHHHHHhcC
Confidence            7888888888999999999998763          3355667889999999998864 4555543   2221     111


Q ss_pred             C--CCcEEEEecCCCCCCCCee---------eEecCCCCCHHHHHHHHHHHHHc-CCeeEEEcCCc-----chhhhhhh-
Q 004891          437 S--QDRIIGAHFFSPAHVMPLL---------EIVRTERTSAQVILDLMTVGKII-KKVPVVVGNCT-----GFAVNRAF-  498 (725)
Q Consensus       437 ~--~~r~ig~h~~~p~~~~~lv---------eii~~~~t~~e~~~~~~~l~~~l-Gk~~v~v~d~~-----Gfi~nRl~-  498 (725)
                      .  ...|.-+  ++|....+.-         .|+.|.  +++..+.++++++.+ ++.++++++..     .++.|-++ 
T Consensus       168 ~~~~~d~~v~--~~Pe~~~~G~a~~~~~~~~~Iv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~~N~~~a  243 (478)
T 3g79_A          168 LKAGEDFALA--HAPERVMVGRLLKNIREHDRIVGGI--DEASTKRAVELYSPVLTVGQVIPMSATAAEVTKTAENTFRD  243 (478)
T ss_dssp             CCBTTTBEEE--ECCCCCCTTSHHHHHHHSCEEEEES--SHHHHHHHHHHHGGGCSSCCEEEEEHHHHHHHHHHHHHHHH
T ss_pred             CCcCCceeEE--eCCccCCccchhhhhcCCcEEEEeC--CHHHHHHHHHHHhhhccCCeEEeCCHHHHHHHHHHHHHHHH
Confidence            1  1112111  2444333211         255543  688889999999999 88888876522     23444332 


Q ss_pred             --HHHHHHHHHHHHc-CCCHHHHHHHH-Hhc
Q 004891          499 --FPYSQSARLLVSL-GVDVFRIDSAI-RSF  525 (725)
Q Consensus       499 --~a~~~Ea~~l~~~-Gv~~~dID~~~-~~~  525 (725)
                        .+++||+..+.+. |+++.++-.++ ...
T Consensus       244 ~~Ia~~nE~~~l~e~~GiD~~~v~~~~~~~~  274 (478)
T 3g79_A          244 LQIAAINQLALYCEAMGINVYDVRTGVDSLK  274 (478)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHCCCc
Confidence              4788999888876 99999988888 443

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=99.51  E-value=3e-14  Score=151.30  Aligned_cols=153  Identities=14%  Similarity=0.166  Sum_probs=115.5

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      .++||+|||+|.||.+||..|.++|++|++||++++.++.+.+           .|             +..+++. +.+
T Consensus         7 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~-----------~G-------------~~~~~~~~e~~   62 (341)
T 3ktd_A            7 ISRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVD-----------EG-------------FDVSADLEATL   62 (341)
T ss_dssp             CSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHH-----------TT-------------CCEESCHHHHH
T ss_pred             CCCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------cC-------------CeeeCCHHHHH
Confidence            4578999999999999999999999999999999988776531           22             1223333 233


Q ss_pred             ----cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhcccCCCCcEEEEecCCCCC-C------
Q 004891          386 ----KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAH-V------  452 (725)
Q Consensus       386 ----~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~p~~-~------  452 (725)
                          ++||+||+|+|  ......+++++.+. +++++|++.+|+..  +..+.+... ..+|++.||...+. .      
T Consensus        63 ~~a~~~aDlVilavP--~~~~~~vl~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~~~~-~~~~v~~HPmaG~e~sG~~aa~  138 (341)
T 3ktd_A           63 QRAAAEDALIVLAVP--MTAIDSLLDAVHTH-APNNGFTDVVSVKTAVYDAVKARNM-QHRYVGSHPMAGTANSGWSASM  138 (341)
T ss_dssp             HHHHHTTCEEEECSC--HHHHHHHHHHHHHH-CTTCCEEECCSCSHHHHHHHHHTTC-GGGEECEEECCSCC-CCGGGCC
T ss_pred             HhcccCCCEEEEeCC--HHHHHHHHHHHHcc-CCCCEEEEcCCCChHHHHHHHHhCC-CCcEecCCccccccccchhhhh
Confidence                35799999999  67788899999887 78898876555432  234444332 46899999987553 1      


Q ss_pred             -----CCeeeEecCCCCCHH--------HHHHHHHHHHHcCCeeEEEc
Q 004891          453 -----MPLLEIVRTERTSAQ--------VILDLMTVGKIIKKVPVVVG  487 (725)
Q Consensus       453 -----~~lveii~~~~t~~e--------~~~~~~~l~~~lGk~~v~v~  487 (725)
                           +..+.+++++.++++        .++.++++++.+|..++++.
T Consensus       139 ~~Lf~g~~~iltp~~~~~~e~~~~~~~~~~~~v~~l~~~~Ga~v~~~~  186 (341)
T 3ktd_A          139 DGLFKRAVWVVTFDQLFDGTDINSTWISIWKDVVQMALAVGAEVVPSR  186 (341)
T ss_dssp             SSTTTTCEEEECCGGGTSSCCCCHHHHHHHHHHHHHHHHTTCEEEECC
T ss_pred             hHHhcCCeEEEEeCCCCChhhhccchHHHHHHHHHHHHHcCCEEEEeC
Confidence                 224667788878888        99999999999999999885

>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.51  E-value=4.9e-14  Score=146.43  Aligned_cols=157  Identities=17%  Similarity=0.160  Sum_probs=126.0

Q ss_pred             EEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHH
Q 004891           15 VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL   93 (725)
Q Consensus        15 v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (725)
                      |+++..+.. ..|+++..+.+.+.++++.+.++ .+++|+|++.|     |+|+++....        + ..+..++ ..
T Consensus       120 V~v~a~d~~~~ggslg~~~~~Ki~r~~e~A~~~-~~PvI~l~~sG-----Garlqeg~~~--------l-~~~~~i~-~a  183 (304)
T 2f9y_B          120 VVAAAFEFAFMGGSMGSVVGARFVRAVEQALED-NCPLICFSASG-----GARMQEALMS--------L-MQMAKTS-AA  183 (304)
T ss_dssp             CBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHH-TCCEEEEEEES-----SBCGGGTHHH--------H-HHHHHHH-HH
T ss_pred             EEEEEEcCccccCCCCHHHHHHHHHHHHHHHhC-CCCEEEEECCC-----CcCHHHHHHH--------H-HHHHHHH-HH
Confidence            333444433 36999999999999999999988 89999999866     8888664320        1 1122333 33


Q ss_pred             H---hhCCCcEEEEEcccccchh-hHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCC
Q 004891           94 I---EDCKKPIVAAVEGLALGGG-LELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI  169 (725)
Q Consensus        94 l---~~~~kp~Iaav~G~a~GgG-~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~  169 (725)
                      +   ...++|+|++|+|.|+||| +.++++||++||.++|+|++.           |...+++.+|..      ++++..
T Consensus       184 l~~~~~~~vP~IavV~G~~~GGg~a~~a~~~D~via~~~A~i~v~-----------Gp~~i~~~ig~~------l~~~~~  246 (304)
T 2f9y_B          184 LAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFA-----------GPRVIEQTVREK------LPPGFQ  246 (304)
T ss_dssp             HHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESS-----------CHHHHHHHHTSC------CCTTTT
T ss_pred             HHHHhcCCCCEEEEEECCCccHHHHHHHhcCCEEEEeCCcEEEee-----------cHHHHHHHhCcc------CCcccC
Confidence            4   4459999999999999999 788999999999999999987           456677777753      578999


Q ss_pred             CHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcC
Q 004891          170 TSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR  204 (725)
Q Consensus       170 ~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~  204 (725)
                      +|+++.++|+||.|++++++.+.+.+++..++..+
T Consensus       247 ~Ae~~~~~Glvd~Vv~~~el~~~l~~ll~~l~~~~  281 (304)
T 2f9y_B          247 RSEFLIEKGAIDMIVRRPEMRLKLASILAKLMNLP  281 (304)
T ss_dssp             BHHHHGGGTCCSEECCHHHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHhcCCccEEeCcHHHHHHHHHHHHHhhcCC
Confidence            99999999999999999999999999999988653

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=99.51  E-value=3.1e-14  Score=149.83  Aligned_cols=89  Identities=27%  Similarity=0.378  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHh-CC-CCCCCH
Q 004891          622 KEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLY-GN-FFKPSR  699 (725)
Q Consensus       622 ~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~-~~-~~~p~~  699 (725)
                      ..+.||++.+++||+++++++|++ ++++||.++..|+|||+   |||+++|.+|+|.+++.++.|.+.+ ++ +|.|++
T Consensus       204 g~i~nr~l~~~~~Ea~~l~~~g~~-~~~~id~~~~~g~g~p~---GP~~~~D~~Gld~~~~~~~~l~~~~~~~~~~~~~~  279 (302)
T 1f0y_A          204 GFIVNRLLVPYLMEAIRLYERGDA-SKEDIDTAMKLGAGYPM---GPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSP  279 (302)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHCCSS---CHHHHHHHHCHHHHHHHHHHHHHTTTTCGGGCCCH
T ss_pred             cccHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHccCCCccCcCH
Confidence            468999999999999999999999 99999999999999996   9999999999999999999999988 77 599999


Q ss_pred             HHHHHH-------HcCCCCCCC
Q 004891          700 FLEERA-------TKGIPLSAP  714 (725)
Q Consensus       700 ~l~~~~-------~~g~gf~~~  714 (725)
                      +|++|+       |+|+|||+|
T Consensus       280 ~l~~~~~~g~~G~k~g~Gfy~y  301 (302)
T 1f0y_A          280 SLNKLVAENKFGKKTGEGFYKY  301 (302)
T ss_dssp             HHHHHHHTTCCBTTTTBSSSBC
T ss_pred             HHHHHHHcCCCccccCcEeeeC
Confidence            999999       678999999

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=99.50  E-value=2.7e-14  Score=151.33  Aligned_cols=189  Identities=15%  Similarity=0.127  Sum_probs=133.5

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      .++||+|||+|.||..+|..|++.|++|++||++++.++...+           .|             +...++. +.+
T Consensus        29 ~~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~   84 (316)
T 2uyy_A           29 TDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQ-----------EG-------------ARLGRTPAEVV   84 (316)
T ss_dssp             CSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHH-----------TT-------------CEECSCHHHHH
T ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH-----------cC-------------CEEcCCHHHHH
Confidence            3578999999999999999999999999999999987665321           12             1223344 557


Q ss_pred             cCCCEEEEeccCChHHHHHHHH--HHHHhCCCCeEEEecCCCCC--hHHHhcccC-CCCcEEEEecCCCC---CCCCeee
Q 004891          386 KDVDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTID--LNIVGEKTS-SQDRIIGAHFFSPA---HVMPLLE  457 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~-~~~r~ig~h~~~p~---~~~~lve  457 (725)
                      ++||+||+|+|++..++..+..  .+.+.+.++++|++.+++.+  ...+.+.+. ...++++.+++..+   ..+.++.
T Consensus        85 ~~~DvVi~av~~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~p~~g~~~~~~~g~~~~  164 (316)
T 2uyy_A           85 STCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVI  164 (316)
T ss_dssp             HHCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEE
T ss_pred             hcCCEEEEeCCCHHHHHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCccCChhHHhhCCEEE
Confidence            8899999999976666544432  13366788888775544332  334555442 45578877665432   2334555


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeeEEEcCC-----cchhhhhh---hHHHHHHHHHHHHc-CCCHHHHHHHH
Q 004891          458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGNC-----TGFAVNRA---FFPYSQSARLLVSL-GVDVFRIDSAI  522 (725)
Q Consensus       458 ii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-----~Gfi~nRl---~~a~~~Ea~~l~~~-Gv~~~dID~~~  522 (725)
                      ++.+   +++.++.+.++++.+|+.++++++.     ..++.|.+   +..+++|++.+.+. |+++++++.++
T Consensus       165 ~~~g---~~~~~~~v~~ll~~~g~~~~~~~~~~~~~~~K~~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~~~~~  235 (316)
T 2uyy_A          165 LAAG---DRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDIL  235 (316)
T ss_dssp             EEEE---CHHHHHHTHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             EeCC---CHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            6666   5889999999999999998888662     12455665   35677899888765 89999999888

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=99.50  E-value=2.9e-13  Score=139.35  Aligned_cols=183  Identities=12%  Similarity=0.090  Sum_probs=129.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCC-CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      +||+|||+|.||.++|..|+++| ++|++||+++++++...+.          .|             +..+++. +.+ 
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~----------~g-------------~~~~~~~~~~~-   56 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKE----------LG-------------VETSATLPELH-   56 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHH----------TC-------------CEEESSCCCCC-
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHh----------cC-------------CEEeCCHHHHh-
Confidence            37999999999999999999999 9999999999887664321          01             2334444 567 


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCC-eeeEecCCCCC
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMP-LLEIVRTERTS  465 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~-lveii~~~~t~  465 (725)
                      +||+||+|+|  .....+++.++.+  + +++|++.++++++..+.+.+....+++..++..|..... ...++++..++
T Consensus        57 ~~D~vi~~v~--~~~~~~v~~~l~~--~-~~ivv~~~~g~~~~~l~~~~~~~~~~v~~~~~~~~~~~~g~~~i~~~~~~~  131 (263)
T 1yqg_A           57 SDDVLILAVK--PQDMEAACKNIRT--N-GALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVS  131 (263)
T ss_dssp             TTSEEEECSC--HHHHHHHHTTCCC--T-TCEEEECCTTCCHHHHHHHTTSCCCEEEEECCGGGGGTCEEEEEECCTTSC
T ss_pred             cCCEEEEEeC--chhHHHHHHHhcc--C-CCEEEEecCCCCHHHHHHHcCCCCcEEEEcCCHHHHHcCceEEEEcCCCCC
Confidence            9999999999  5556677766654  4 888989889998888877766555788886655655544 45567777789


Q ss_pred             HHHHHHHHHHHHHcCCeeEEEc-CC--------cchhhhhhhHHHHHHHHH-HHHcCCCHHHHHHHH
Q 004891          466 AQVILDLMTVGKIIKKVPVVVG-NC--------TGFAVNRAFFPYSQSARL-LVSLGVDVFRIDSAI  522 (725)
Q Consensus       466 ~e~~~~~~~l~~~lGk~~v~v~-d~--------~Gfi~nRl~~a~~~Ea~~-l~~~Gv~~~dID~~~  522 (725)
                      ++.++.+.++++.+|..+ +++ +.        .| ..+.++..++..... ....|++++++...+
T Consensus       132 ~~~~~~~~~l~~~~g~~~-~~~~~~~~~~~~al~g-~~~~~~~~~~~~l~e~~~~~G~~~~~~~~~~  196 (263)
T 1yqg_A          132 ETDRRIADRIMKSVGLTV-WLDDEEKMHGITGISG-SGPAYVFYLLDALQNAAIRQGFDMAEARALS  196 (263)
T ss_dssp             HHHHHHHHHHHHTTEEEE-ECSSTTHHHHHHHHTT-SHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCEE-EeCChhhccHHHHHHc-cHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            999999999999999876 666 41        11 111222222221111 345588887776665

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=99.50  E-value=9.1e-14  Score=138.12  Aligned_cols=140  Identities=16%  Similarity=0.182  Sum_probs=109.5

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEEc
Q 004891           27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE  106 (725)
Q Consensus        27 al~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~  106 (725)
                      .++..+.+++.+.|..++++++++.|+|.=    .|.|+++..                ...++ +.|..+++||++.++
T Consensus        53 ~I~~~~a~~i~~~L~~l~~~~~~k~I~l~I----nSPGG~v~a----------------g~~I~-~~i~~~~~pV~t~v~  111 (218)
T 1y7o_A           53 PVEDNMANSVIAQLLFLDAQDSTKDIYLYV----NTPGGSVSA----------------GLAIV-DTMNFIKADVQTIVM  111 (218)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCTTSCEEEEE----EECCBCHHH----------------HHHHH-HHHHHSSSCEEEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEE----ECcCCCHHH----------------HHHHH-HHHHhcCCCEEEEEc
Confidence            488999999999999999887788887752    333444321                22344 668889999999999


Q ss_pred             ccccchhhHHhhhcCE--EEeeCCceEeCcccccCCCCCchh------------------hchHhhhhCH--HHHHHHHH
Q 004891          107 GLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGG------------------TQRLPRLVGL--SKAIEMML  164 (725)
Q Consensus       107 G~a~GgG~~lalacD~--~ia~~~a~~~~pe~~~Gl~p~~g~------------------~~~l~r~vG~--~~a~~l~l  164 (725)
                      |.|.++|+.|+++||.  |+|.++++|++++.. |..|..|.                  ...+++..|.  .++.+++.
T Consensus       112 G~AaS~G~~Ia~a~d~g~r~a~p~a~igih~p~-~g~~~~G~~~di~~~~~~i~~~~~~~~~~~a~~~G~~~~~i~~~~~  190 (218)
T 1y7o_A          112 GMAASMGTVIASSGAKGKRFMLPNAEYMIHQPM-GGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHADAE  190 (218)
T ss_dssp             EEEETHHHHHHTTSCTTCEEECTTCEEECCCCC---------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             cEeHHHHHHHHHcCCcCcEEEcCCcEEEEeccc-ccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHh
Confidence            9999999999999999  999999999999987 44443332                  2456777776  58889999


Q ss_pred             cCCCCCHHHHHHcCCcceecCcch
Q 004891          165 LSKSITSEEGWKLGLIDAVVTSEE  188 (725)
Q Consensus       165 ~g~~~~a~eA~~~Glv~~vv~~~~  188 (725)
                      +|+.++|+||+++||||+|++.++
T Consensus       191 ~~~~~ta~EA~e~GLVD~v~~~~~  214 (218)
T 1y7o_A          191 RDNWMSAQETLEYGFIDEIMANNS  214 (218)
T ss_dssp             SCCCBCHHHHHHHTSCSEECCCC-
T ss_pred             CCCEEcHHHHHHCCCCcEEcCcCC
Confidence            999999999999999999998765

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.49  E-value=4e-14  Score=151.75  Aligned_cols=175  Identities=11%  Similarity=0.043  Sum_probs=119.5

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      ..+||+|||+|.||.++|..|+++|++|++||+++++++...+           .|             +..++++ +.+
T Consensus        21 ~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g-------------~~~~~s~~e~~   76 (358)
T 4e21_A           21 QSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALER-----------EG-------------IAGARSIEEFC   76 (358)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHT-----------TT-------------CBCCSSHHHHH
T ss_pred             cCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH-----------CC-------------CEEeCCHHHHH
Confidence            3478999999999999999999999999999999998776431           12             2334444 455


Q ss_pred             cCC---CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhcccC-CCCcEEEEecCCCC---CCCCee
Q 004891          386 KDV---DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLL  456 (725)
Q Consensus       386 ~~a---DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~-~~~r~ig~h~~~p~---~~~~lv  456 (725)
                      +++   |+||+|||.+  ...+++.++.+.++++++|++.+++.+..  .+.+.+. ...+|+....+.++   ..++  
T Consensus        77 ~~a~~~DvVi~~vp~~--~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~~~a~~G~--  152 (358)
T 4e21_A           77 AKLVKPRVVWLMVPAA--VVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGIFGLERGY--  152 (358)
T ss_dssp             HHSCSSCEEEECSCGG--GHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGGGHHHHCC--
T ss_pred             hcCCCCCEEEEeCCHH--HHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCHHHHhcCC--
Confidence            667   9999999977  55677789999999999998776665433  3333332 22344443222111   1112  


Q ss_pred             eEecCCCCCHHHHHHHHHHHHHcC--------------------CeeEEEcC-Ccchhh----hhhh---HHHHHHHHHH
Q 004891          457 EIVRTERTSAQVILDLMTVGKIIK--------------------KVPVVVGN-CTGFAV----NRAF---FPYSQSARLL  508 (725)
Q Consensus       457 eii~~~~t~~e~~~~~~~l~~~lG--------------------k~~v~v~d-~~Gfi~----nRl~---~a~~~Ea~~l  508 (725)
                      .++.|.  ++++++.++++++.+|                    +.++++++ ..|..+    |-++   ...+.|++.+
T Consensus       153 ~im~GG--~~~a~~~~~~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~i~~~aE~~~l  230 (358)
T 4e21_A          153 CLMIGG--EKQAVERLDPVFRTLAPGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNI  230 (358)
T ss_dssp             EEEEES--CHHHHHHTHHHHHHHSCCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeecC--CHHHHHHHHHHHHHhccccccCcccccccccccccccceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            244433  6899999999999999                    56788875 344433    3222   2445688888


Q ss_pred             HHc
Q 004891          509 VSL  511 (725)
Q Consensus       509 ~~~  511 (725)
                      ++.
T Consensus       231 a~~  233 (358)
T 4e21_A          231 LHH  233 (358)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            876

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.49  E-value=1.5e-13  Score=143.72  Aligned_cols=159  Identities=14%  Similarity=0.102  Sum_probs=119.5

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-
Q 004891          306 RGVRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (725)
Q Consensus       306 ~~~~kIaVIG~G~mG~~iA~~l~~~--G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (725)
                      |+++||+|||+|.||.++|..|+++  |++|++||++++.++.+.           +.|...           ..++++ 
T Consensus         4 M~~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~-----------~~g~~~-----------~~~~~~~   61 (290)
T 3b1f_A            4 MEEKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIAL-----------ERGIVD-----------EATADFK   61 (290)
T ss_dssp             GCCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHH-----------HTTSCS-----------EEESCTT
T ss_pred             cccceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHH-----------HcCCcc-----------cccCCHH
Confidence            3467999999999999999999988  689999999998876542           122110           234455 


Q ss_pred             ccccCCCEEEEeccCChHHHHHHHHHHHHh-CCCCeEEEecCCCCC--hHHHhcccCC-CCcEEEEecC------CCCC-
Q 004891          383 SEFKDVDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTID--LNIVGEKTSS-QDRIIGAHFF------SPAH-  451 (725)
Q Consensus       383 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~-~~~~~ii~s~tS~~~--~~~l~~~~~~-~~r~ig~h~~------~p~~-  451 (725)
                      +.+++||+||+|+|  .....+++.++.+. ++++++|++.+++..  ...+.+.+.. ..++++.||+      .|.. 
T Consensus        62 ~~~~~aDvVilavp--~~~~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a  139 (290)
T 3b1f_A           62 VFAALADVIILAVP--IKKTIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAA  139 (290)
T ss_dssp             TTGGGCSEEEECSC--HHHHHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSC
T ss_pred             HhhcCCCEEEEcCC--HHHHHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHh
Confidence            56789999999999  55557888999888 889998875444322  2455555543 5689999997      4443 


Q ss_pred             -----CCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004891          452 -----VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN  488 (725)
Q Consensus       452 -----~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  488 (725)
                           .+..+.++++..++++.++.+.++++.+|..++++.+
T Consensus       140 ~~~l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~  181 (290)
T 3b1f_A          140 NVNLFENAYYIFSPSCLTKPNTIPALQDLLSGLHARYVEIDA  181 (290)
T ss_dssp             CTTTTTTSEEEEEECTTCCTTHHHHHHHHTGGGCCEEEECCH
T ss_pred             hHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence                 3355778888778899999999999999998888764

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=99.47  E-value=1.4e-13  Score=144.69  Aligned_cols=187  Identities=16%  Similarity=0.128  Sum_probs=129.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      .+||+|||+|.||..+|..|++.|++|++||++++.++...+           .|             +...+++ +.++
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~   59 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVA-----------QG-------------AQACENNQKVAA   59 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHT-----------TT-------------CEECSSHHHHHH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-----------CC-------------CeecCCHHHHHh
Confidence            358999999999999999999999999999999988665421           12             2233444 4567


Q ss_pred             CCCEEEEeccCChHHHHHHH--HHHHHhCCCCeEEEecCCCCC--hHHHhcccCC-CCcEEEEecCCCCC----CCCeee
Q 004891          387 DVDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTID--LNIVGEKTSS-QDRIIGAHFFSPAH----VMPLLE  457 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~-~~r~ig~h~~~p~~----~~~lve  457 (725)
                      ++|+||+|+|.+..++..+.  .++.+.++++++|++.+++.+  ...+.+.+.. ..+++.. +..+..    ...+..
T Consensus        60 ~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~~-p~~~~~~~a~~g~~~~  138 (301)
T 3cky_A           60 ASDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDA-PVSGGTKGAEAGTLTI  138 (301)
T ss_dssp             HCSEEEECCSSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEEC-CEESHHHHHHHTCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEc-cCCCCHHHHHcCCeEE
Confidence            89999999997666655544  378888899999988777663  3455544432 2234431 211110    011233


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-Ccch----hhhhh---hHHHHHHHHHHHHc-CCCHHHHHHHH
Q 004891          458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTGF----AVNRA---FFPYSQSARLLVSL-GVDVFRIDSAI  522 (725)
Q Consensus       458 ii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~Gf----i~nRl---~~a~~~Ea~~l~~~-Gv~~~dID~~~  522 (725)
                      ++.+   +++.++.+.++++.+|..++++++ ..|.    +.|.+   +...++|++.+.+. |++++++..++
T Consensus       139 ~~~g---~~~~~~~v~~ll~~~g~~~~~~~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~  209 (301)
T 3cky_A          139 MVGA---SEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEII  209 (301)
T ss_dssp             EEES---CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             EECC---CHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            3343   689999999999999998888764 3343    34555   34567898887765 89999988887

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=99.47  E-value=4.3e-13  Score=137.82  Aligned_cols=185  Identities=11%  Similarity=0.093  Sum_probs=130.0

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      ++||+|||+|.||..++..|.+.|++|++||+++++++...+.+          |             +..++++ +.++
T Consensus         3 ~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~----------g-------------~~~~~~~~~~~~   59 (259)
T 2ahr_A            3 AMKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL----------A-------------LPYAMSHQDLID   59 (259)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH----------T-------------CCBCSSHHHHHH
T ss_pred             ccEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHc----------C-------------CEeeCCHHHHHh
Confidence            35899999999999999999999999999999998876643210          1             2233444 4567


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCC-eeeEecCCCCC
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMP-LLEIVRTERTS  465 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~-lveii~~~~t~  465 (725)
                      ++|+||+|+|  .....+++.+    +.+++++++.+++++++.+.+.+....+++..|+..|..... ...++++..++
T Consensus        60 ~~D~Vi~~v~--~~~~~~v~~~----l~~~~~vv~~~~~~~~~~l~~~~~~~~~~v~~~p~~~~~~~~g~~~i~~~~~~~  133 (259)
T 2ahr_A           60 QVDLVILGIK--PQLFETVLKP----LHFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVS  133 (259)
T ss_dssp             TCSEEEECSC--GGGHHHHHTT----SCCCSCEEECCTTCCHHHHHHHHCTTSCEEEEECCGGGGGTCEEEEEEECTTCC
T ss_pred             cCCEEEEEeC--cHhHHHHHHH----hccCCEEEEeCCCCCHHHHHHhcCCCCCEEEEcCCchHHHcCceEEEEcCCCCC
Confidence            9999999999  4444455544    347788888888888888877766555788888877776655 45566777789


Q ss_pred             HHHHHHHHHHHHHcCCeeEEEcCCc-c-h-----hhhhhhHHHHHHHH-HHHHcCCCHHHHHHHH
Q 004891          466 AQVILDLMTVGKIIKKVPVVVGNCT-G-F-----AVNRAFFPYSQSAR-LLVSLGVDVFRIDSAI  522 (725)
Q Consensus       466 ~e~~~~~~~l~~~lGk~~v~v~d~~-G-f-----i~nRl~~a~~~Ea~-~l~~~Gv~~~dID~~~  522 (725)
                      ++.++.++++++.+| .++++++.. . +     -.|.++..+..... .....|++++++-.++
T Consensus       134 ~~~~~~~~~ll~~~G-~~~~~~~~~~d~~~al~g~~~~~~~~~~~~la~~~~~~Gl~~~~~~~~~  197 (259)
T 2ahr_A          134 QELQARVRDLTDSFG-STFDISEKDFDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIV  197 (259)
T ss_dssp             HHHHHHHHHHHHTTE-EEEECCGGGHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCC-CEEEecHHHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            999999999999999 567776521 0 0     01223333332221 2445588877766665

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=99.45  E-value=6.3e-13  Score=146.08  Aligned_cols=203  Identities=16%  Similarity=0.132  Sum_probs=133.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHH--hhcCcccccCc-ccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANN--ALKMLKGVLDY-SEF  385 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~--~~~~i~~~~~~-~~l  385 (725)
                      -+|+|||+|.||.++|..|+++|++|++||+++++++...+...    ...+.| + .+-...  ..+++++++++ +++
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~----~~~epg-l-~~~~~~~~~~g~l~~ttd~~ea~   82 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVM----PIYEPG-L-DALVASNVKAGRLSFTTDLAEGV   82 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCC----SSCCTT-H-HHHHHHHHHTTCEEEESCHHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCC----CccCCC-H-HHHHHhhcccCCEEEECCHHHHH
Confidence            47999999999999999999999999999999998877532100    000000 0 000000  12567888888 688


Q ss_pred             cCCCEEEEeccCChH---------HHHHHHHHHHHhCCCCeEEEecCCCCChH---HHhcccC----CCCcEEEEecCCC
Q 004891          386 KDVDMVIEAVIESVP---------LKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTS----SQDRIIGAHFFSP  449 (725)
Q Consensus       386 ~~aDlVIeavpe~~~---------~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~----~~~r~ig~h~~~p  449 (725)
                      ++||+||.|||.+.+         ...++++.+.+.++++++|++. ||+++.   .+.+.+.    ...-.+..   +|
T Consensus        83 ~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~-STv~pgtt~~l~~~l~e~~~~~d~~v~~---~P  158 (446)
T 4a7p_A           83 KDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTK-STVPVGTGDEVERIIAEVAPNSGAKVVS---NP  158 (446)
T ss_dssp             TTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEEC-SCCCTTHHHHHHHHHHHHSTTSCCEEEE---CC
T ss_pred             hcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEe-CCCCchHHHHHHHHHHHhCCCCCceEEe---Cc
Confidence            999999999987653         5778889999999999988764 455543   2222211    11112222   33


Q ss_pred             CCCCCee---------eEecCCCCCHHHHHHHHHHHHHcCCe---eEEEcCCc-----chhhhhh---hHHHHHHHHHHH
Q 004891          450 AHVMPLL---------EIVRTERTSAQVILDLMTVGKIIKKV---PVVVGNCT-----GFAVNRA---FFPYSQSARLLV  509 (725)
Q Consensus       450 ~~~~~lv---------eii~~~~t~~e~~~~~~~l~~~lGk~---~v~v~d~~-----Gfi~nRl---~~a~~~Ea~~l~  509 (725)
                      ....+.-         .++.|. .++++.+.++++++.+++.   ++++++..     +++.|-+   ..+++||+..+.
T Consensus       159 e~a~eG~a~~d~~~p~~ivvG~-~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~  237 (446)
T 4a7p_A          159 EFLREGAAIEDFKRPDRVVVGT-EDEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFLAVKITFINEIADLC  237 (446)
T ss_dssp             CCCCTTSHHHHHHSCSCEEEEC-SCHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhccCCCEEEEeC-CcHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3322221         234442 3589999999999999875   57766522     3444543   357789998888


Q ss_pred             Hc-CCCHHHHHHHH
Q 004891          510 SL-GVDVFRIDSAI  522 (725)
Q Consensus       510 ~~-Gv~~~dID~~~  522 (725)
                      +. |++++++-.++
T Consensus       238 ~~~GiD~~~v~~~~  251 (446)
T 4a7p_A          238 EQVGADVQEVSRGI  251 (446)
T ss_dssp             HHTTCCHHHHHHHH
T ss_pred             HHcCCCHHHHHHHH
Confidence            76 99999998888

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=99.45  E-value=4.3e-13  Score=146.33  Aligned_cols=194  Identities=14%  Similarity=0.106  Sum_probs=131.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHH--------HHHHHHhhHHcCCCCHHHHHHhhcCccccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT--------IEANVRGLVTRGKLTQDKANNALKMLKGVL  380 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~--------i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~  380 (725)
                      .|..|||+|.||.++|.+|+++|++|++||+++++++...+.        +...+.+.+            ..+++.+++
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~------------~~g~l~~tt   79 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVL------------SSGKLKVST   79 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHH------------HTTCEEEES
T ss_pred             CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhc------------ccCceEEeC
Confidence            689999999999999999999999999999999998875431        011111111            124677777


Q ss_pred             CcccccCCCEEEEeccCChH----------HHHHHHHHHHHhCCCCeEEEecCCCCChHHH---hccc-C-CC----CcE
Q 004891          381 DYSEFKDVDMVIEAVIESVP----------LKQKIFSELEKACPPHCILATNTSTIDLNIV---GEKT-S-SQ----DRI  441 (725)
Q Consensus       381 ~~~~l~~aDlVIeavpe~~~----------~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l---~~~~-~-~~----~r~  441 (725)
                      +   +++||+||.|||.+.+          ......+.+.+.++++++|+. .||+++...   ...+ . ..    ..|
T Consensus        80 d---~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~-~STV~pgtt~~v~~~i~e~~g~~~~~d~  155 (431)
T 3ojo_A           80 T---PEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIV-ESTIAPKTMDDFVKPVIENLGFTIGEDI  155 (431)
T ss_dssp             S---CCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEE-CSCCCTTHHHHTHHHHHHTTTCCBTTTE
T ss_pred             c---hhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEE-ecCCChhHHHHHHHHHHHHcCCCcCCCe
Confidence            6   4589999999997653          345666789999999998874 456555422   2211 1 11    112


Q ss_pred             EEEecCCCCCCCCee---------eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-----Ccchhhhhhh---HHHHHH
Q 004891          442 IGAHFFSPAHVMPLL---------EIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-----CTGFAVNRAF---FPYSQS  504 (725)
Q Consensus       442 ig~h~~~p~~~~~lv---------eii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-----~~Gfi~nRl~---~a~~~E  504 (725)
                      .-+  ++|....+.-         .++.|.  ++++.+.++++++.+++.++++++     ...++.|-++   .+++||
T Consensus       156 ~v~--~~Pe~~~~G~A~~~~~~p~~Iv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~nE  231 (431)
T 3ojo_A          156 YLV--HCPERVLPGKILEELVHNNRIIGGV--TKACIEAGKRVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANE  231 (431)
T ss_dssp             EEE--ECCCCCCTTSHHHHHHHSCEEEEES--SHHHHHHHHHHHTTTCCSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEE--ECCCcCCCcchhhcccCCCEEEEeC--CHHHHHHHHHHHHHHhCCcEEeCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111  2443333221         355554  689999999999999988877754     1123334332   478899


Q ss_pred             HHHHHHc-CCCHHHHHHHH
Q 004891          505 ARLLVSL-GVDVFRIDSAI  522 (725)
Q Consensus       505 a~~l~~~-Gv~~~dID~~~  522 (725)
                      +..+.+. |+++.++-.++
T Consensus       232 ~~~l~e~~GiD~~~v~~~~  250 (431)
T 3ojo_A          232 LTKICNNLNINVLDVIEMA  250 (431)
T ss_dssp             HHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHH
Confidence            9888876 99999988888

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=99.45  E-value=2.5e-13  Score=151.43  Aligned_cols=202  Identities=15%  Similarity=0.162  Sum_probs=137.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCC--CCHHHHHHh-----hcCccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK--LTQDKANNA-----LKMLKG  378 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~--G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~--~~~~~~~~~-----~~~i~~  378 (725)
                      |+||+|||+|.||.++|..|+++  |++|++||+++++++...+            +.  +.....+..     ..++.+
T Consensus         5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~------------g~~~i~e~~l~~~~~~~~~~~~~~   72 (467)
T 2q3e_A            5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNS------------PTLPIYEPGLKEVVESCRGKNLFF   72 (467)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTS------------SSCSSCCTTHHHHHHHHBTTTEEE
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhC------------CCCCcCCCCHHHHHHHhhcCCEEE
Confidence            57999999999999999999999  8999999999998776421            11  000000001     124666


Q ss_pred             ccCc-ccccCCCEEEEeccCChHH-------------HHHHHHHHHHhCCCCeEEEecCCCCChH---HHhcccCCC-Cc
Q 004891          379 VLDY-SEFKDVDMVIEAVIESVPL-------------KQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQ-DR  440 (725)
Q Consensus       379 ~~~~-~~l~~aDlVIeavpe~~~~-------------k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~-~r  440 (725)
                      ++++ +.+++||+||+|||++...             ...+.+++.+.++++++|+. +|+.++.   .+...+... ..
T Consensus        73 t~~~~e~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~-~STv~~g~~~~l~~~l~~~~~~  151 (467)
T 2q3e_A           73 STNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTE-KSTVPVRAAESIRRIFDANTKP  151 (467)
T ss_dssp             ESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEE-CSCCCTTHHHHHHHHHHHTCCT
T ss_pred             ECCHHHHHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEE-CCcCCchHHHHHHHHHHHhCCC
Confidence            6776 5678999999999865543             45677888888999998864 4444433   233322211 11


Q ss_pred             EEEEe-cCCCCCCCCeee---------E-ecCCC--CCHHHHHHHHHHHHHc-CCeeEEEcC-----Ccchhhhhh---h
Q 004891          441 IIGAH-FFSPAHVMPLLE---------I-VRTER--TSAQVILDLMTVGKII-KKVPVVVGN-----CTGFAVNRA---F  498 (725)
Q Consensus       441 ~ig~h-~~~p~~~~~lve---------i-i~~~~--t~~e~~~~~~~l~~~l-Gk~~v~v~d-----~~Gfi~nRl---~  498 (725)
                      .+..+ .++|....+...         + +.++.  +++++.+.++++++.+ |+.++++++     ..+++.|.+   .
T Consensus       152 ~~d~~V~~~Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~N~~~a~~  231 (467)
T 2q3e_A          152 NLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQR  231 (467)
T ss_dssp             TCEEEEEECCCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEeCHHHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHHHHHHHHHHHHHHHHH
Confidence            11111 235555544432         3 34433  3788999999999998 777888764     346777875   3


Q ss_pred             HHHHHHHHHHHHc-CCCHHHHHHHH
Q 004891          499 FPYSQSARLLVSL-GVDVFRIDSAI  522 (725)
Q Consensus       499 ~a~~~Ea~~l~~~-Gv~~~dID~~~  522 (725)
                      .+++||+..+.+. |++++++..++
T Consensus       232 ia~~nE~~~l~~~~Gid~~~v~~~~  256 (467)
T 2q3e_A          232 ISSINSISALCEATGADVEEVATAI  256 (467)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            5788999988877 89999999998

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=99.45  E-value=9.4e-13  Score=145.53  Aligned_cols=203  Identities=15%  Similarity=0.096  Sum_probs=135.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHH-HH--HhhcCcccccCcc-c
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK-AN--NALKMLKGVLDYS-E  384 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~-~~--~~~~~i~~~~~~~-~  384 (725)
                      +||+|||+|.||.++|..|+++|++|++||+++++++...+...    ...+.+   -.+ ..  ...++++++++++ +
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~----~i~e~g---l~~~l~~~~~~~~l~~t~d~~ea   75 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTI----PIYEPG---LEKMIARNVKAGRLRFGTEIEQA   75 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCS----CCCSTT---HHHHHHHHHHTTSEEEESCHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCC----cccCCC---HHHHHHhhcccCcEEEECCHHHH
Confidence            58999999999999999999999999999999998877543100    000000   000 00  0124677788874 5


Q ss_pred             ccCCCEEEEeccCCh--------HHHHHHHHHHHHhCCCCeEEEecCCCCChH---HHhcccCC-------CCcEEEEec
Q 004891          385 FKDVDMVIEAVIESV--------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSS-------QDRIIGAHF  446 (725)
Q Consensus       385 l~~aDlVIeavpe~~--------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~-------~~r~ig~h~  446 (725)
                      +++||+||+|||.+.        ....++++++.+.++++++|++.+ ++++.   .+.+.+..       ...+.-.  
T Consensus        76 ~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~S-Tv~pgt~~~l~~~l~~~~~~~~~~~d~~v~--  152 (450)
T 3gg2_A           76 VPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKS-TVPVGSYRLIRKAIQEELDKREVLIDFDIA--  152 (450)
T ss_dssp             GGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS-CCCTTHHHHHHHHHHHHHHHTTCCCCEEEE--
T ss_pred             HhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEee-eCCCcchHHHHHHHHHhccccCcCcceeEE--
Confidence            899999999998764        267788899999999999887644 44443   22222210       0112111  


Q ss_pred             CCCCCCCCee---------eEecCCCCCHHHHHHHHHHHHHcCC--eeEEEcCC-----cchhhhhh---hHHHHHHHHH
Q 004891          447 FSPAHVMPLL---------EIVRTERTSAQVILDLMTVGKIIKK--VPVVVGNC-----TGFAVNRA---FFPYSQSARL  507 (725)
Q Consensus       447 ~~p~~~~~lv---------eii~~~~t~~e~~~~~~~l~~~lGk--~~v~v~d~-----~Gfi~nRl---~~a~~~Ea~~  507 (725)
                      ++|....+..         .++.|. .++++.+.++++++.+++  .++++.+.     .+++.|-+   ..+++||+..
T Consensus       153 ~~Pe~a~eG~~~~~~~~p~~ivvG~-~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~  231 (450)
T 3gg2_A          153 SNPEFLKEGNAIDDFMKPDRVVVGV-DSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMNDVAN  231 (450)
T ss_dssp             ECCCCCCTTSHHHHHHSCSCEEEEE-SSHHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             echhhhcccchhhhccCCCEEEEEc-CCHHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1444333321         234332 268999999999999987  36666553     23555643   3577899998


Q ss_pred             HHHc-CCCHHHHHHHH
Q 004891          508 LVSL-GVDVFRIDSAI  522 (725)
Q Consensus       508 l~~~-Gv~~~dID~~~  522 (725)
                      +.+. |++++++-.++
T Consensus       232 l~~~~Gid~~~v~~~~  247 (450)
T 3gg2_A          232 LCERVGADVSMVRLGI  247 (450)
T ss_dssp             HHHHHTCCHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHH
Confidence            8877 99999999988

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=99.44  E-value=9.2e-13  Score=143.43  Aligned_cols=196  Identities=17%  Similarity=0.211  Sum_probs=132.2

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHh----hcCcccccCc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNA----LKMLKGVLDY  382 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~----~~~i~~~~~~  382 (725)
                      .++||+|||+|.||.++|..|++ |++|++||+++++++...+..          ..+.+...+..    ..++++++++
T Consensus        35 ~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~----------~~i~e~~l~~ll~~~~~~l~~ttd~  103 (432)
T 3pid_A           35 EFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKI----------SPIVDKEIQEYLAEKPLNFRATTDK  103 (432)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTC----------CSSCCHHHHHHHHHSCCCEEEESCH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccC----------CccccccHHHHHhhccCCeEEEcCH
Confidence            45799999999999999999998 999999999999988754310          01111111111    2367788887


Q ss_pred             -ccccCCCEEEEeccCCh---------HHHHHHHHHHHHhCCCCeEEEecCCCCChH---HHhcccCCCCcEEEEecCCC
Q 004891          383 -SEFKDVDMVIEAVIESV---------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSP  449 (725)
Q Consensus       383 -~~l~~aDlVIeavpe~~---------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~p  449 (725)
                       +++++||+||+|||++.         .....+.+.+.+ ++++++|+. .||+++.   ++.+.+..  .  ++.| +|
T Consensus       104 ~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~-~STv~pgtt~~l~~~l~~--~--~v~~-sP  176 (432)
T 3pid_A          104 HDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMII-KSTIPVGFTRDIKERLGI--D--NVIF-SP  176 (432)
T ss_dssp             HHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEE-CSCCCTTHHHHHHHHHTC--C--CEEE-CC
T ss_pred             HHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEE-eCCCChHHHHHHHHHHhh--c--cEee-cC
Confidence             67899999999999864         356677788888 889988864 5555553   33333322  2  2222 66


Q ss_pred             CCCCCe------e---eEecCCCCCHHHHHHHHHHHHH--cCC-eeEEEcC-----Ccchhhhhhh---HHHHHHHHHHH
Q 004891          450 AHVMPL------L---EIVRTERTSAQVILDLMTVGKI--IKK-VPVVVGN-----CTGFAVNRAF---FPYSQSARLLV  509 (725)
Q Consensus       450 ~~~~~l------v---eii~~~~t~~e~~~~~~~l~~~--lGk-~~v~v~d-----~~Gfi~nRl~---~a~~~Ea~~l~  509 (725)
                      ....+.      +   .++.|.  +++..+.+.+++..  ++. .++++.+     ...++.|-++   .+++||+..+.
T Consensus       177 e~~~~G~A~~~~l~p~rIvvG~--~~~~~~~~~~ll~~~~~~~~~~v~~~~~~~AE~~Kl~~N~~~a~~Ia~~nEl~~la  254 (432)
T 3pid_A          177 EFLREGRALYDNLHPSRIVIGE--RSARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSYA  254 (432)
T ss_dssp             CCCCTTSHHHHHHSCSCEEESS--CSHHHHHHHHHHHHHCSSSSCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCcchhhhcccCCceEEecC--CHHHHHHHHHHHHhhhccCCCeEEecCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            554432      1   344443  35677888999986  553 3566543     2234445442   57889998888


Q ss_pred             Hc-CCCHHHHHHHH
Q 004891          510 SL-GVDVFRIDSAI  522 (725)
Q Consensus       510 ~~-Gv~~~dID~~~  522 (725)
                      +. |+++.++-.++
T Consensus       255 e~~GiD~~~v~~~~  268 (432)
T 3pid_A          255 ESQGLNSKQIIEGV  268 (432)
T ss_dssp             HHTTCCHHHHHHHH
T ss_pred             HHcCCCHHHHHHHH
Confidence            76 99999988887

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=99.44  E-value=2.3e-12  Score=136.08  Aligned_cols=168  Identities=14%  Similarity=0.184  Sum_probs=112.3

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcc---c
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS---E  384 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~---~  384 (725)
                      ++||+|||+|.||..+|..|+++|++|++||++++.++...+.           |.............+..+++.+   .
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~-----------g~~~~~~~~~~~~~~~~~~~~~~~~~   71 (316)
T 2ew2_A            3 AMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKN-----------GLIADFNGEEVVANLPIFSPEEIDHQ   71 (316)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH-----------CEEEEETTEEEEECCCEECGGGCCTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhC-----------CEEEEeCCCeeEecceeecchhhccc
Confidence            4689999999999999999999999999999999887664321           1000000000001222223222   3


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh-HHHhcccCCCCcEE-EEecCCCCCCCC--------
Q 004891          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRII-GAHFFSPAHVMP--------  454 (725)
Q Consensus       385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~~~~~r~i-g~h~~~p~~~~~--------  454 (725)
                      ++++|+||.|+|  .....++++++.+.++++++|++.++++.. ..+.+.+. +.+++ |.+++..+..+|        
T Consensus        72 ~~~~d~vi~~v~--~~~~~~v~~~l~~~l~~~~~iv~~~~g~~~~~~l~~~~~-~~~vi~g~~~~~~~~~~p~~~~~~~~  148 (316)
T 2ew2_A           72 NEQVDLIIALTK--AQQLDAMFKAIQPMITEKTYVLCLLNGLGHEDVLEKYVP-KENILVGITMWTAGLEGPGRVKLLGD  148 (316)
T ss_dssp             SCCCSEEEECSC--HHHHHHHHHHHGGGCCTTCEEEECCSSSCTHHHHTTTSC-GGGEEEEEECCCCEEEETTEEEECSC
T ss_pred             CCCCCEEEEEec--cccHHHHHHHHHHhcCCCCEEEEecCCCCcHHHHHHHcC-CccEEEEEeeeeeEEcCCCEEEEecC
Confidence            348999999999  455678889999999999999888877766 44555543 23677 444433222221        


Q ss_pred             -eeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCC
Q 004891          455 -LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC  489 (725)
Q Consensus       455 -lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~  489 (725)
                       .+.+.....++++..+.+.++++.+|..+++.++.
T Consensus       149 g~~~i~~~~~~~~~~~~~~~~ll~~~g~~~~~~~d~  184 (316)
T 2ew2_A          149 GEIELENIDPSGKKFALEVVDVFQKAGLNPSYSSNV  184 (316)
T ss_dssp             CCEEEEESSGGGHHHHHHHHHHHHHTTCCEEECTTH
T ss_pred             CcEEEeecCCCccHHHHHHHHHHHhCCCCcEEchhH
Confidence             12344444557899999999999999887777664

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.44  E-value=1.3e-12  Score=135.98  Aligned_cols=155  Identities=15%  Similarity=0.160  Sum_probs=115.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (725)
                      |+||+|||+|.||.++|..|++.|+  +|++||++++.++.+.           +.|..           ...++++ +.
T Consensus         1 m~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~-----------~~g~~-----------~~~~~~~~~~   58 (281)
T 2g5c_A            1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-----------DLGII-----------DEGTTSIAKV   58 (281)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-----------HTTSC-----------SEEESCGGGG
T ss_pred             CcEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH-----------HCCCc-----------ccccCCHHHH
Confidence            4689999999999999999999999  9999999998876542           12211           0123444 56


Q ss_pred             cc-CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhcccCCCCcEEEEecCCCCC----------
Q 004891          385 FK-DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAH----------  451 (725)
Q Consensus       385 l~-~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~p~~----------  451 (725)
                      ++ +||+||+|+|  .....+++.++.+.++++++|++.+++..  ...+.+.+..  ++++.||+..+.          
T Consensus        59 ~~~~aDvVilavp--~~~~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~--~~v~~~p~~~~~~~gp~~a~~~  134 (281)
T 2g5c_A           59 EDFSPDFVMLSSP--VRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK--RFVGGHPIAGTEKSGVEYSLDN  134 (281)
T ss_dssp             GGTCCSEEEECSC--HHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG--GEECEEEECCCSCCSGGGCCSS
T ss_pred             hcCCCCEEEEcCC--HHHHHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHHhccc--cceeeccccCCccCChhhhhhH
Confidence            78 9999999999  55666888889888999998875444332  2334444432  488888865432          


Q ss_pred             --CCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004891          452 --VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN  488 (725)
Q Consensus       452 --~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  488 (725)
                        .+..+.++++..++++.++.++++++.+|..++++++
T Consensus       135 l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~  173 (281)
T 2g5c_A          135 LYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSP  173 (281)
T ss_dssp             TTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEEECCH
T ss_pred             HhCCCCEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence              3445777787778999999999999999999888864

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=99.44  E-value=5.5e-13  Score=140.00  Aligned_cols=188  Identities=18%  Similarity=0.205  Sum_probs=127.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      +||+|||+|.||..+|..|++.|++|++||+++++++...+           .|             +..++++ +.+++
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~~   61 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIA-----------AG-------------AETASTAKAIAEQ   61 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TT-------------CEECSSHHHHHHH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH-----------CC-------------CeecCCHHHHHhC
Confidence            48999999999999999999999999999999988765431           12             2234444 45788


Q ss_pred             CCEEEEeccCChHHHHHHH--HHHHHhCCCCeEEEecCCCCCh--HHHhcccCC-CCcEEEEecC-CCC-CCCCeeeEec
Q 004891          388 VDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDL--NIVGEKTSS-QDRIIGAHFF-SPA-HVMPLLEIVR  460 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~~-~~r~ig~h~~-~p~-~~~~lveii~  460 (725)
                      +|+||+|+|.+..++..++  +++.+.++++++|++.+++.+.  ..+.+.+.. ...++....+ +|+ .....+.++.
T Consensus        62 ~D~vi~~v~~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~  141 (299)
T 1vpd_A           62 CDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMV  141 (299)
T ss_dssp             CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEecCCCCHhHHhcCCEEEEe
Confidence            9999999996666555443  5677888999988766555442  345544432 2223322110 000 0011234444


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEEEcC-Ccchhh---hhhh----HHHHHHHHHHHHc-CCCHHHHHHHH
Q 004891          461 TERTSAQVILDLMTVGKIIKKVPVVVGN-CTGFAV---NRAF----FPYSQSARLLVSL-GVDVFRIDSAI  522 (725)
Q Consensus       461 ~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~Gfi~---nRl~----~a~~~Ea~~l~~~-Gv~~~dID~~~  522 (725)
                      +.  +++.++.+.++++.+|..++++++ ..|...   |+.+    ...++|++.+.+. |+++++++.++
T Consensus       142 ~~--~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~  210 (299)
T 1vpd_A          142 GG--DKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAI  210 (299)
T ss_dssp             ES--CHHHHHHHHHHHHTTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             CC--CHHHHHHHHHHHHHHcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            43  689999999999999999888864 344432   3333    3567798887755 89999998887

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=99.43  E-value=9e-14  Score=145.84  Aligned_cols=181  Identities=19%  Similarity=0.151  Sum_probs=124.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccCC
Q 004891          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV  388 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~a  388 (725)
                      ||+|||+|.||.++|..|+++|++|++||+++++++...+           .|             +..+++. +.++++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~~~   57 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQD-----------AG-------------EQVVSSPADVAEKA   57 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHT-----------TT-------------CEECSSHHHHHHHC
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------cC-------------CeecCCHHHHHhcC
Confidence            7999999999999999999999999999999988765421           12             2334444 557889


Q ss_pred             CEEEEeccCChHHHHHHHHH---HHHhCCCCeEEEecCCCCChHHHhc---ccCCCCcEEEEecCCCCCCC-------Ce
Q 004891          389 DMVIEAVIESVPLKQKIFSE---LEKACPPHCILATNTSTIDLNIVGE---KTSSQDRIIGAHFFSPAHVM-------PL  455 (725)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~---l~~~~~~~~ii~s~tS~~~~~~l~~---~~~~~~r~ig~h~~~p~~~~-------~l  455 (725)
                      |+||+|+|.+..++. ++.+   +.+.++++++|++ +|++.+.....   .+...    +.+|++.|...       +.
T Consensus        58 Dvvi~~vp~~~~~~~-v~~~~~~~~~~l~~~~~vv~-~s~~~~~~~~~~~~~~~~~----g~~~~~~p~~~g~~~a~~~~  131 (296)
T 2gf2_A           58 DRIITMLPTSINAIE-AYSGANGILKKVKKGSLLID-SSTIDPAVSKELAKEVEKM----GAVFMDAPVSGGVGAARSGN  131 (296)
T ss_dssp             SEEEECCSSHHHHHH-HHHSTTSGGGTCCTTCEEEE-CSCCCHHHHHHHHHHHHHT----TCEEEECCEESHHHHHHHTC
T ss_pred             CEEEEeCCCHHHHHH-HHhCchhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc----CCEEEEcCCCCChhHHhcCc
Confidence            999999986655544 4444   3446788998888 78877764432   22211    22333322111       12


Q ss_pred             eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCC-cch---hhhhhhH----HHHHHHHHHHHc-CCCHHHHHHHH
Q 004891          456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC-TGF---AVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI  522 (725)
Q Consensus       456 veii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~Gf---i~nRl~~----a~~~Ea~~l~~~-Gv~~~dID~~~  522 (725)
                      +.++.+  .+++.++.++++++.+|+.++.+++. .|.   ++|+.+.    .+++|++.+.+. |+++++++.++
T Consensus       132 ~~~~~~--~~~~~~~~v~~l~~~~g~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~~G~~~~~~~~~~  205 (296)
T 2gf2_A          132 LTFMVG--GVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKIL  205 (296)
T ss_dssp             EEEEEE--SCGGGHHHHHHHHTTTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             EEEEeC--CCHHHHHHHHHHHHHHcCCeEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            334444  36888999999999999998888652 222   2344432    467899887765 89999999988

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=99.43  E-value=1.4e-12  Score=135.43  Aligned_cols=155  Identities=17%  Similarity=0.172  Sum_probs=115.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  388 (725)
                      +||+|||+|.||.++|..|.+.|++|++||++++.++.+.           +.|..           ...+++++.+++|
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~-----------~~g~~-----------~~~~~~~~~~~~~   58 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAV-----------ERQLV-----------DEAGQDLSLLQTA   58 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTTSC-----------SEEESCGGGGTTC
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------hCCCC-----------ccccCCHHHhCCC
Confidence            3799999999999999999999999999999998876542           11211           0123444333899


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCC------------CCCee
Q 004891          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH------------VMPLL  456 (725)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~------------~~~lv  456 (725)
                      |+||+|+|  ......++.++.+.++++++|++. ++.....+........++++.||.....            .++.+
T Consensus        59 D~vi~av~--~~~~~~~~~~l~~~~~~~~~vv~~-~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~gp~~a~~~~~~g~~~  135 (279)
T 2f1k_A           59 KIIFLCTP--IQLILPTLEKLIPHLSPTAIVTDV-ASVKTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPY  135 (279)
T ss_dssp             SEEEECSC--HHHHHHHHHHHGGGSCTTCEEEEC-CSCCHHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEE
T ss_pred             CEEEEECC--HHHHHHHHHHHHhhCCCCCEEEEC-CCCcHHHHHHHHHHhCCEeecCcccCCccCCHHHHhHHHhCCCcE
Confidence            99999999  567788899999989999988765 5555433332222223899999875221            22356


Q ss_pred             eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004891          457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGN  488 (725)
Q Consensus       457 eii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  488 (725)
                      .+++++.++++..+.++++++.+|..++++++
T Consensus       136 ~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~  167 (279)
T 2f1k_A          136 VLTPTEYTDPEQLACLRSVLEPLGVKIYLCTP  167 (279)
T ss_dssp             EEEECTTCCHHHHHHHHHHHGGGTCEEEECCH
T ss_pred             EEecCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence            77777778999999999999999998888865

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=99.43  E-value=2.6e-13  Score=150.86  Aligned_cols=108  Identities=15%  Similarity=0.206  Sum_probs=98.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcCC--CHHHHHHHH-HhcCCCc---cHHHHHH
Q 004891          463 RTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQLLD  536 (725)
Q Consensus       463 ~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv--~~~dID~~~-~~~G~p~---Gpf~~~D  536 (725)
                      .+++++.+.+.++.+.+|+.++.+  .+|+|+||++.+++|||++++++|+  +++|||.+| .|+|||+   |||+++|
T Consensus       331 ~~~~~~~~~~~~~~~~~g~~~~~~--~~g~i~~Rll~~~~nEa~~~l~eGIa~~~~dID~a~~~G~G~p~~~gGP~~~~D  408 (463)
T 1zcj_A          331 KPDPWLSTFLSQYREVHHIEQRTI--SKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAA  408 (463)
T ss_dssp             EECHHHHHHHHHHHHHTTCCCCCC--CHHHHHHHHHHHHHHHHHHHHHTTSBSCHHHHHHHHHHHSCCCGGGCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCcccC--CHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCCCCCCCcChHHHHH
Confidence            468999999988888888766543  4799999999999999999999997  599999999 9999998   9999999


Q ss_pred             hhchHHHHHHHHHHHhhCCC--CCCCcHHHHHHHHcCC
Q 004891          537 LAGYGVAAATSKEFDKAFPD--RSFQSPLVDLLLKSGR  572 (725)
Q Consensus       537 ~~Gld~~~~~~~~l~~~~~~--~~~~~~~l~~~v~~g~  572 (725)
                      .+|+|.++.+++.+++.+++  ++.|+++|++|+++|+
T Consensus       409 ~~Gl~~~~~~~~~l~~~~g~~~~~~p~~lL~~~v~~G~  446 (463)
T 1zcj_A          409 SVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQGS  446 (463)
T ss_dssp             HHCHHHHHHHHHHHHHHCTTCGGGSCCHHHHHHHHTTC
T ss_pred             HhCHHHHHHHHHHHHHHhCCCccCCCCHHHHHHHHcCC
Confidence            99999999999999999998  4559999999999986

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=99.42  E-value=2.3e-13  Score=142.62  Aligned_cols=183  Identities=17%  Similarity=0.159  Sum_probs=126.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      ++||+|||+|.||..+|..|++.|++|++|| ++++++...+           .|             +...++. +.++
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~   57 (295)
T 1yb4_A            3 AMKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLS-----------LG-------------AVNVETARQVTE   57 (295)
T ss_dssp             -CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHT-----------TT-------------CBCCSSHHHHHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHH-----------cC-------------CcccCCHHHHHh
Confidence            4689999999999999999999999999999 8877655321           12             2223444 5578


Q ss_pred             CCCEEEEeccCChHHHHHHHH--HHHHhCCCCeEEEecCCCCC--hHHHhcccCCCCcEEEEecCCCCCC--------CC
Q 004891          387 DVDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAHV--------MP  454 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~p~~~--------~~  454 (725)
                      +||+||+|+|.+..++..+..  ++.+.++++++|++.+++.+  ...+.+.+...    +.||++.|..        +.
T Consensus        58 ~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~----g~~~~~~p~~~~~~~a~~g~  133 (295)
T 1yb4_A           58 FADIIFIMVPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEM----GADYLDAPVSGGEIGAREGT  133 (295)
T ss_dssp             TCSEEEECCSSHHHHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTT----TEEEEECCEESHHHHHHHTC
T ss_pred             cCCEEEEECCCHHHHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc----CCeEEEccCCCCHHHHHcCC
Confidence            999999999966655444332  67777888998887665533  23455444321    3454433321        13


Q ss_pred             eeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-Ccc----hhhhhh---hHHHHHHHHHHHHc-CCCHHHHHHHH
Q 004891          455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTG----FAVNRA---FFPYSQSARLLVSL-GVDVFRIDSAI  522 (725)
Q Consensus       455 lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G----fi~nRl---~~a~~~Ea~~l~~~-Gv~~~dID~~~  522 (725)
                      +..++.+   +++.++.+.++++.+|..++++++ ..+    ++.|.+   +...++|+..+.+. |++++++..++
T Consensus       134 ~~~~~~~---~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~  207 (295)
T 1yb4_A          134 LSIMVGG---EQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQAL  207 (295)
T ss_dssp             EEEEEES---CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             eEEEECC---CHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            3434444   689999999999999999888865 333    334543   23567899887766 89999998888

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=99.42  E-value=7.1e-13  Score=146.61  Aligned_cols=198  Identities=15%  Similarity=0.105  Sum_probs=132.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHh------hcCcccccCc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNA------LKMLKGVLDY  382 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~------~~~i~~~~~~  382 (725)
                      +||+|||+|.||.++|..|+++|++|++||+++++++...+.          .-.+.....+..      .+++.+++++
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~----------~~~i~e~~l~~~~~~~~~~g~l~~t~~~   70 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQG----------KSPIVEPGLEALLQQGRQTGRLSGTTDF   70 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTT----------CCSSCCTTHHHHHHHHHHTTCEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCC----------CCCcCCCCHHHHHHhhcccCceEEeCCH
Confidence            379999999999999999999999999999999987765321          000000000100      2456777777


Q ss_pred             -ccccCCCEEEEeccCChH--------HHHHHHHHHHHhCCC---CeEEEecCCCCChHH----HhcccCC--CCc----
Q 004891          383 -SEFKDVDMVIEAVIESVP--------LKQKIFSELEKACPP---HCILATNTSTIDLNI----VGEKTSS--QDR----  440 (725)
Q Consensus       383 -~~l~~aDlVIeavpe~~~--------~k~~v~~~l~~~~~~---~~ii~s~tS~~~~~~----l~~~~~~--~~r----  440 (725)
                       +.+++||+||+|||.+..        ...++++++.+.+++   +++|+. .|+.++..    +...+..  ..+    
T Consensus        71 ~~~~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~-~Stv~~g~t~~~l~~~l~~~~g~~~~~~  149 (436)
T 1mv8_A           71 KKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVV-RSTVLPGTVNNVVIPLIEDCSGKKAGVD  149 (436)
T ss_dssp             HHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEE-CSCCCTTHHHHTHHHHHHHHHSCCBTTT
T ss_pred             HHHhccCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEE-eCCcCCCchHHHHHHHHHHhcCcccCCc
Confidence             468999999999987654        244567888888888   888764 34444322    2222211  111    


Q ss_pred             -EEEEecCCCCCCCCee---------eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-----Ccchhhhhhh---HHHH
Q 004891          441 -IIGAHFFSPAHVMPLL---------EIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-----CTGFAVNRAF---FPYS  502 (725)
Q Consensus       441 -~ig~h~~~p~~~~~lv---------eii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-----~~Gfi~nRl~---~a~~  502 (725)
                       .+.   ++|....+..         .++.|. +++++.+.+.++++.+|.. +++.+     ..+++.|.+.   .+++
T Consensus       150 ~~v~---~~Pe~~~~G~~~~~~~~~~~iv~G~-~~~~~~~~~~~l~~~~~~~-v~~~~~~~ae~~Kl~~N~~~a~~ia~~  224 (436)
T 1mv8_A          150 FGVG---TNPEFLRESTAIKDYDFPPMTVIGE-LDKQTGDLLEEIYRELDAP-IIRKTVEVAEMIKYTCNVWHAAKVTFA  224 (436)
T ss_dssp             BEEE---ECCCCCCTTSHHHHHHSCSCEEEEE-SSHHHHHHHHHHHTTSSSC-EEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEE---ECcccccccccchhccCCCEEEEEc-CCHHHHHHHHHHHhccCCC-EEcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence             122   2444444322         244444 3689999999999999984 44443     3356667653   5788


Q ss_pred             HHHHHHHHc-CCCHHHHHHHH
Q 004891          503 QSARLLVSL-GVDVFRIDSAI  522 (725)
Q Consensus       503 ~Ea~~l~~~-Gv~~~dID~~~  522 (725)
                      ||+..+.+. |++++++..++
T Consensus       225 nE~~~l~~~~Gid~~~v~~~~  245 (436)
T 1mv8_A          225 NEIGNIAKAVGVDGREVMDVI  245 (436)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHh
Confidence            999988876 89999999988

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=99.40  E-value=3.3e-13  Score=135.19  Aligned_cols=154  Identities=18%  Similarity=0.237  Sum_probs=112.6

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCCcEEE-EeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccc
Q 004891          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVL-KEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (725)
Q Consensus       306 ~~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~-~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (725)
                      ++|+||+|||+|.||.++|..|+++|++|++ +|++++++++..+.+          +            .....++.+.
T Consensus        21 m~mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~----------g------------~~~~~~~~~~   78 (220)
T 4huj_A           21 QSMTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRF----------G------------ASVKAVELKD   78 (220)
T ss_dssp             GGSCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHH----------T------------TTEEECCHHH
T ss_pred             hcCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHh----------C------------CCcccChHHH
Confidence            4578999999999999999999999999999 999999877643211          1            1112334466


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC--------------ChHHHhcccCCCCcEEEEecCCCC
Q 004891          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--------------DLNIVGEKTSSQDRIIGAHFFSPA  450 (725)
Q Consensus       385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--------------~~~~l~~~~~~~~r~ig~h~~~p~  450 (725)
                      ++++|+||+|+|  .....+++.++.+ + ++++|++.++++              ....+++.+. ..+++..+++.|.
T Consensus        79 ~~~aDvVilavp--~~~~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~-~~~vv~~~~~~~~  153 (220)
T 4huj_A           79 ALQADVVILAVP--YDSIADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVP-GAKVVKAFNTLPA  153 (220)
T ss_dssp             HTTSSEEEEESC--GGGHHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHST-TCEEEEESCSSCH
T ss_pred             HhcCCEEEEeCC--hHHHHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCC-CCCEEECCCCCCH
Confidence            889999999998  6777788887766 4 577888888776              3445566554 4567776654443


Q ss_pred             CCCC---------eeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004891          451 HVMP---------LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN  488 (725)
Q Consensus       451 ~~~~---------lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  488 (725)
                      ....         ...++.+.  ++++.+.++++++.+|..++.+++
T Consensus       154 ~v~~~g~~~~~~~~~v~~~g~--~~~~~~~v~~l~~~~G~~~~~~G~  198 (220)
T 4huj_A          154 AVLAADPDKGTGSRVLFLSGN--HSDANRQVAELISSLGFAPVDLGT  198 (220)
T ss_dssp             HHHTSCSBCSSCEEEEEEEES--CHHHHHHHHHHHHHTTCEEEECCS
T ss_pred             HHhhhCcccCCCCeeEEEeCC--CHHHHHHHHHHHHHhCCCeEeeCC
Confidence            2221         22333443  699999999999999999999876

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=99.40  E-value=1.1e-12  Score=134.81  Aligned_cols=147  Identities=12%  Similarity=0.070  Sum_probs=110.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCC----CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G----~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (725)
                      .+||+|||+|.||+++|..|+++|    ++|++||+++++                 .|             +..+++. 
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-----------------~g-------------~~~~~~~~   53 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN-----------------TT-------------LNYMSSNE   53 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-----------------SS-------------SEECSCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-----------------Cc-------------eEEeCCHH
Confidence            358999999999999999999999    799999999764                 01             2223344 


Q ss_pred             ccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeee-EecC
Q 004891          383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRT  461 (725)
Q Consensus       383 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lve-ii~~  461 (725)
                      +.+++||+||+|+|  .....+++.++.+.+ ++++|++.++++....+.+.+....+++...+..|......+. ++++
T Consensus        54 ~~~~~~D~vi~~v~--~~~~~~v~~~l~~~l-~~~~vv~~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~~g~~~~~~~  130 (262)
T 2rcy_A           54 ELARHCDIIVCAVK--PDIAGSVLNNIKPYL-SSKLLISICGGLNIGKLEEMVGSENKIVWVMPNTPCLVGEGSFIYCSN  130 (262)
T ss_dssp             HHHHHCSEEEECSC--TTTHHHHHHHSGGGC-TTCEEEECCSSCCHHHHHHHHCTTSEEEEEECCGGGGGTCEEEEEEEC
T ss_pred             HHHhcCCEEEEEeC--HHHHHHHHHHHHHhc-CCCEEEEECCCCCHHHHHHHhCCCCcEEEECCChHHHHcCCeEEEEeC
Confidence            55788999999999  445678888888888 5677778889998887777665433444333344444444344 4567


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004891          462 ERTSAQVILDLMTVGKIIKKVPVVVGN  488 (725)
Q Consensus       462 ~~t~~e~~~~~~~l~~~lGk~~v~v~d  488 (725)
                      +.++++.++.++++++.+|+ ++++++
T Consensus       131 ~~~~~~~~~~~~~ll~~~G~-~~~~~~  156 (262)
T 2rcy_A          131 KNVNSTDKKYVNDIFNSCGI-IHEIKE  156 (262)
T ss_dssp             TTCCHHHHHHHHHHHHTSEE-EEECCG
T ss_pred             CCCCHHHHHHHHHHHHhCCC-EEEeCH
Confidence            77899999999999999997 777764

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=99.40  E-value=1.3e-12  Score=145.84  Aligned_cols=201  Identities=13%  Similarity=0.144  Sum_probs=134.5

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCC--CHHHHHHh-----hcCc
Q 004891          306 RGVRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL--TQDKANNA-----LKML  376 (725)
Q Consensus       306 ~~~~kIaVIG~G~mG~~iA~~l~~~--G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~--~~~~~~~~-----~~~i  376 (725)
                      ++++||+|||+|.||.++|..|+++  |++|++||+++++++...+            +..  ........     .+++
T Consensus         7 ~~~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~------------g~~~i~e~gl~~~~~~~~~~~l   74 (481)
T 2o3j_A            7 GKVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNS------------DKLPIYEPGLDEIVFAARGRNL   74 (481)
T ss_dssp             CCCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTS------------SSCSSCCTTHHHHHHHHBTTTE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHC------------CCCCcCCCCHHHHHHHhhcCCE
Confidence            3467999999999999999999998  7999999999998776532            111  00000111     1346


Q ss_pred             ccccCc-ccccCCCEEEEeccCCh-------------HHHHHHHHHHHHhCCCCeEEEecCCCCChH---HHhcccCC--
Q 004891          377 KGVLDY-SEFKDVDMVIEAVIESV-------------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSS--  437 (725)
Q Consensus       377 ~~~~~~-~~l~~aDlVIeavpe~~-------------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~--  437 (725)
                      .+++++ +.+++||+||+|||.+.             .....+++.+.++++++++|+. .||+++.   .+...+..  
T Consensus        75 ~~t~~~~~~~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~-~STv~~gt~~~l~~~l~~~~  153 (481)
T 2o3j_A           75 FFSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVE-KSTVPVKAAESIGCILREAQ  153 (481)
T ss_dssp             EEESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEE-CSCCCTTHHHHHHHHHHHHT
T ss_pred             EEECCHHHHhhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEE-CCCCCCCHHHHHHHHHHHhh
Confidence            677776 67889999999998654             2467788899999999998874 3444433   22222211  


Q ss_pred             C----Cc-EEEEecCCCCCCCCee---------eEecCCCCC---HHHHHHHHHHHHHcCC-eeEEEcC-----Ccchhh
Q 004891          438 Q----DR-IIGAHFFSPAHVMPLL---------EIVRTERTS---AQVILDLMTVGKIIKK-VPVVVGN-----CTGFAV  494 (725)
Q Consensus       438 ~----~r-~ig~h~~~p~~~~~lv---------eii~~~~t~---~e~~~~~~~l~~~lGk-~~v~v~d-----~~Gfi~  494 (725)
                      .    .. ++..+|   ....+..         .++-|...+   +++++.++++++.+++ .++++.+     ..+++.
T Consensus       154 ~~~~~~d~~v~~~P---e~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~  230 (481)
T 2o3j_A          154 KNNENLKFQVLSNP---EFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVA  230 (481)
T ss_dssp             C----CCEEEEECC---CCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHH
T ss_pred             CcCcCCceEEEeCc---ccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHH
Confidence            1    11 233333   3222221         244332222   3688999999999996 6777653     335666


Q ss_pred             hhh---hHHHHHHHHHHHHc-CCCHHHHHHHH
Q 004891          495 NRA---FFPYSQSARLLVSL-GVDVFRIDSAI  522 (725)
Q Consensus       495 nRl---~~a~~~Ea~~l~~~-Gv~~~dID~~~  522 (725)
                      |.+   ..+++||+..+.+. |++++++..++
T Consensus       231 N~~~a~~ia~~nE~~~la~~~Gid~~~v~~~~  262 (481)
T 2o3j_A          231 NAFLAQRISSINSISAVCEATGAEISEVAHAV  262 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            754   46788999988877 99999999888

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.38  E-value=2.2e-13  Score=150.72  Aligned_cols=192  Identities=13%  Similarity=0.046  Sum_probs=129.2

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cc-
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE-  384 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~-  384 (725)
                      .++||+|||+|.||.+||.+|+++|++|++||+++++++...+           .+..        -..+..++++ +. 
T Consensus         3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g~~--------g~~i~~~~s~~e~v   63 (484)
T 4gwg_A            3 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLA-----------NEAK--------GTKVVGAQSLKEMV   63 (484)
T ss_dssp             CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHH-----------TTTT--------TSSCEECSSHHHHH
T ss_pred             CCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-----------cccC--------CCceeccCCHHHHH
Confidence            4578999999999999999999999999999999998776532           1100        0123333444 22 


Q ss_pred             --ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhcccC-CCCcEEEEecCCCC---CCCCee
Q 004891          385 --FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLL  456 (725)
Q Consensus       385 --l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~-~~~r~ig~h~~~p~---~~~~lv  456 (725)
                        ++++|+||.|||.+..+ ..++.++.+.++++.+|++.+++.+..  .+.+.+. ...+|++......+   ..++  
T Consensus        64 ~~l~~aDvVil~Vp~~~~v-~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~~gA~~G~--  140 (484)
T 4gwg_A           64 SKLKKPRRIILLVKAGQAV-DDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGP--  140 (484)
T ss_dssp             HTBCSSCEEEECSCSSHHH-HHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC--
T ss_pred             hhccCCCEEEEecCChHHH-HHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCHHHHhcCC--
Confidence              34699999999966554 456789999999999998776666533  3333222 23345554221111   1122  


Q ss_pred             eEecCCCCCHHHHHHHHHHHHHcCCee-------EEEcC-Ccc----hhhhhhh---HHHHHHHHHHHHc--CCCHHHHH
Q 004891          457 EIVRTERTSAQVILDLMTVGKIIKKVP-------VVVGN-CTG----FAVNRAF---FPYSQSARLLVSL--GVDVFRID  519 (725)
Q Consensus       457 eii~~~~t~~e~~~~~~~l~~~lGk~~-------v~v~d-~~G----fi~nRl~---~a~~~Ea~~l~~~--Gv~~~dID  519 (725)
                      -++.|.  ++++++.++++++.+|..+       +++++ ..|    .+-|-+.   ...++|++.+++.  |++++++-
T Consensus       141 ~im~GG--~~ea~~~v~pll~~ig~~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~~Gld~~~l~  218 (484)
T 4gwg_A          141 SLMPGG--NKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMA  218 (484)
T ss_dssp             EEEEEE--CGGGHHHHHHHHHHHSCBCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             eeecCC--CHHHHHHHHHHHHHhcCcccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            244443  5899999999999999877       66665 222    2334442   3556799998876  88999988


Q ss_pred             HHH
Q 004891          520 SAI  522 (725)
Q Consensus       520 ~~~  522 (725)
                      .++
T Consensus       219 ~v~  221 (484)
T 4gwg_A          219 QAF  221 (484)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            886

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=99.38  E-value=3.5e-12  Score=136.73  Aligned_cols=171  Identities=13%  Similarity=0.063  Sum_probs=115.2

Q ss_pred             CCCCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-
Q 004891          304 KPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (725)
Q Consensus       304 ~~~~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (725)
                      |.+.++||+|||+|.||+++|..|+++|++|++||++++.++...+...+  .... .+.       ....++..++++ 
T Consensus        25 m~~~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~--~~~l-~g~-------~l~~~i~~t~d~~   94 (356)
T 3k96_A           25 MEPFKHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVN--NRYL-PNY-------PFPETLKAYCDLK   94 (356)
T ss_dssp             --CCCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSB--TTTB-TTC-------CCCTTEEEESCHH
T ss_pred             ccccCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCC--cccC-CCC-------ccCCCeEEECCHH
Confidence            33445789999999999999999999999999999999887765431000  0000 010       011345666777 


Q ss_pred             ccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH------HHhcccCCCCcEEEEecCCCCC-----
Q 004891          383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN------IVGEKTSSQDRIIGAHFFSPAH-----  451 (725)
Q Consensus       383 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~------~l~~~~~~~~r~ig~h~~~p~~-----  451 (725)
                      +++++||+||+|||  ....+++++++.++++++++|++.++++...      .+.+.+.. ..+...  ..|..     
T Consensus        95 ea~~~aDvVilaVp--~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~-~~~~vl--sgP~~a~ev~  169 (356)
T 3k96_A           95 ASLEGVTDILIVVP--SFAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQ-VPMAVI--SGPSLATEVA  169 (356)
T ss_dssp             HHHTTCCEEEECCC--HHHHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCS-CCEEEE--ESSCCHHHHH
T ss_pred             HHHhcCCEEEECCC--HHHHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCC-CCEEEE--ECccHHHHHH
Confidence            57899999999999  6688899999999999999999888877764      23333331 122111  12221     


Q ss_pred             -CCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcc
Q 004891          452 -VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG  491 (725)
Q Consensus       452 -~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G  491 (725)
                       ..+..-++.+  .+++..+.+++++...+..+++..|..|
T Consensus       170 ~g~pt~~via~--~~~~~~~~v~~lf~~~~~rv~~~~Di~g  208 (356)
T 3k96_A          170 ANLPTAVSLAS--NNSQFSKDLIERLHGQRFRVYKNDDMIG  208 (356)
T ss_dssp             TTCCEEEEEEE--SCHHHHHHHHHHHCCSSEEEEEESCHHH
T ss_pred             cCCCeEEEEec--CCHHHHHHHHHHhCCCCeeEEEeCCHHH
Confidence             1122222222  3688999999999998888887777554

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.37  E-value=1.6e-13  Score=142.88  Aligned_cols=85  Identities=18%  Similarity=0.210  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhC-CCCCCCHHH
Q 004891          623 EIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYG-NFFKPSRFL  701 (725)
Q Consensus       623 ~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~-~~~~p~~~l  701 (725)
                      .+.||++.++++||+.++++|++ ++++||.++..|+|+|+   |||+++|.+|+|++++++++   ..+ +++.|++++
T Consensus       191 ~i~nr~~~~~~~ea~~l~~~g~~-~~~~id~~~~~~~g~~~---Gp~~~~D~~Gld~~~~~~~~---~~~~~~~~~~~~~  263 (283)
T 4e12_A          191 YVLNSLLVPLLDAAAELLVDGIA-DPETIDKTWRIGTGAPK---GPFEIFDIVGLTTAYNISSV---SGPKQREFAAYLK  263 (283)
T ss_dssp             TTHHHHHHHHHHHHHHHHHTTSC-CHHHHHHHHHHHHCCSS---CHHHHHHHHCHHHHHHHHHT---SCHHHHHHHHHHH
T ss_pred             EEehHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhccCCCc---CHHHHHHhccHHHHHHHHhc---cccCcccCchHHH
Confidence            58899999999999999999999 99999999999999999   99999999999999999884   222 257788899


Q ss_pred             HHHH-------HcCCCCCCC
Q 004891          702 EERA-------TKGIPLSAP  714 (725)
Q Consensus       702 ~~~~-------~~g~gf~~~  714 (725)
                      ++|+       |+|+|||+|
T Consensus       264 ~~~v~~g~lG~k~g~Gfy~y  283 (283)
T 4e12_A          264 ENYIDKGKLGLATGEGFYRY  283 (283)
T ss_dssp             HHTGGGTCCBGGGTBSSSBC
T ss_pred             HHHHHCCCCceeCCeEeecC
Confidence            9998       789999998

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=99.36  E-value=1.4e-12  Score=145.75  Aligned_cols=191  Identities=13%  Similarity=0.075  Sum_probs=131.0

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      ..+|+|||+|.||.+||..|+++|++|++||+++++++...+.       . ..+           ..+..++++ +.++
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~-------~-~~~-----------~gi~~~~s~~e~v~   70 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLAN-------E-AKG-----------KSIIGATSIEDFIS   70 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHT-------T-TTT-----------SSEECCSSHHHHHH
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcc-------c-ccC-----------CCeEEeCCHHHHHh
Confidence            3589999999999999999999999999999999987765320       0 000           124445555 3344


Q ss_pred             C---CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhcccC-CCCcEEEEecCCCCC---CCCeee
Q 004891          387 D---VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPAH---VMPLLE  457 (725)
Q Consensus       387 ~---aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~-~~~r~ig~h~~~p~~---~~~lve  457 (725)
                      +   ||+||+|||.+..+ +++++++.+.++++++|++.+++.+..  .+.+.+. ...+|+++.....+.   .++  .
T Consensus        71 ~l~~aDvVil~Vp~~~~v-~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVsgg~~~a~~G~--~  147 (497)
T 2p4q_A           71 KLKRPRKVMLLVKAGAPV-DALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEEGARYGP--S  147 (497)
T ss_dssp             TSCSSCEEEECCCSSHHH-HHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC--E
T ss_pred             cCCCCCEEEEEcCChHHH-HHHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCCcccChhHhhcCC--e
Confidence            4   99999999965554 456688999999999988766665432  3444332 223455543222111   112  2


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCe------eEEEc-CCcch----hhhhhh---HHHHHHHHHHHHc--CCCHHHHHHH
Q 004891          458 IVRTERTSAQVILDLMTVGKIIKKV------PVVVG-NCTGF----AVNRAF---FPYSQSARLLVSL--GVDVFRIDSA  521 (725)
Q Consensus       458 ii~~~~t~~e~~~~~~~l~~~lGk~------~v~v~-d~~Gf----i~nRl~---~a~~~Ea~~l~~~--Gv~~~dID~~  521 (725)
                      ++.+.  ++++++.++++++.+|+.      +++++ ...|.    +.|.+.   ...+.|++.+++.  |++++++..+
T Consensus       148 im~gg--~~e~~~~v~~ll~~~g~~~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~~  225 (497)
T 2p4q_A          148 LMPGG--SEEAWPHIKNIFQSISAKSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDV  225 (497)
T ss_dssp             EEEEE--CGGGHHHHHHHHHHHSCEETTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             EEecC--CHHHHHHHHHHHHHhcCccCCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHH
Confidence            44443  588999999999999987      56665 33443    346664   4566799988876  8999999888


Q ss_pred             H
Q 004891          522 I  522 (725)
Q Consensus       522 ~  522 (725)
                      +
T Consensus       226 ~  226 (497)
T 2p4q_A          226 F  226 (497)
T ss_dssp             H
T ss_pred             H
Confidence            7

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.36  E-value=2.9e-12  Score=142.75  Aligned_cols=193  Identities=14%  Similarity=0.063  Sum_probs=130.8

Q ss_pred             CCCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-c
Q 004891          305 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (725)
Q Consensus       305 ~~~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (725)
                      .++-++|+|||+|.||.+||..|+++|++|++||+++++++...+..        . +           ..+..++++ +
T Consensus        12 ~~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~--------~-~-----------~gi~~~~s~~e   71 (480)
T 2zyd_A           12 HMSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAEN--------P-G-----------KKLVPYYTVKE   71 (480)
T ss_dssp             ---CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHS--------T-T-----------SCEEECSSHHH
T ss_pred             ccCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhC--------C-C-----------CCeEEeCCHHH
Confidence            34557899999999999999999999999999999999877654211        0 0           124445555 4


Q ss_pred             cccC---CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhcccC-CCCcEEEEecCCCC---CCCC
Q 004891          384 EFKD---VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMP  454 (725)
Q Consensus       384 ~l~~---aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~-~~~r~ig~h~~~p~---~~~~  454 (725)
                      .+++   ||+||.|||.+..+ .++++++.+.++++++|++.+++.+..  .+.+.+. ...+++++.....+   ..++
T Consensus        72 ~v~~l~~aDvVil~Vp~~~~v-~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~  150 (480)
T 2zyd_A           72 FVESLETPRRILLMVKAGAGT-DAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGP  150 (480)
T ss_dssp             HHHTBCSSCEEEECSCSSSHH-HHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC
T ss_pred             HHhCCCCCCEEEEECCCHHHH-HHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCccccCHhHHhcCC
Confidence            4454   99999999965444 466788999999999988776666442  3444332 23345544221111   1122


Q ss_pred             eeeEecCCCCCHHHHHHHHHHHHHcCCe-------eEEEcC-Ccc----hhhhhhh---HHHHHHHHHHHHc--CCCHHH
Q 004891          455 LLEIVRTERTSAQVILDLMTVGKIIKKV-------PVVVGN-CTG----FAVNRAF---FPYSQSARLLVSL--GVDVFR  517 (725)
Q Consensus       455 lveii~~~~t~~e~~~~~~~l~~~lGk~-------~v~v~d-~~G----fi~nRl~---~a~~~Ea~~l~~~--Gv~~~d  517 (725)
                        .++.+.  +++.++.++++++.+|..       ++++++ ..|    ++.|.+.   ...+.|++.+...  |+++++
T Consensus       151 --~i~~gg--~~~~~~~v~~ll~~~g~~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~  226 (480)
T 2zyd_A          151 --SIMPGG--QKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEE  226 (480)
T ss_dssp             --EEEEES--CHHHHHHHHHHHHHHSCBCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred             --eEEecC--CHHHHHHHHHHHHHHhccccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence              244443  589999999999999987       566654 222    2345553   4556799888876  999999


Q ss_pred             HHHHH
Q 004891          518 IDSAI  522 (725)
Q Consensus       518 ID~~~  522 (725)
                      +..++
T Consensus       227 ~~~l~  231 (480)
T 2zyd_A          227 LAQTF  231 (480)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88776

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=99.35  E-value=5.6e-12  Score=140.60  Aligned_cols=190  Identities=13%  Similarity=0.029  Sum_probs=129.9

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      .+||+|||+|.||.++|..|+++|++|++||+++++++...+...         +           ..+..++++ +.++
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~---------~-----------~gi~~~~s~~e~v~   64 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQ---------D-----------KNLVFTKTLEEFVG   64 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTT---------T-----------SCEEECSSHHHHHH
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCc---------C-----------CCeEEeCCHHHHHh
Confidence            468999999999999999999999999999999998776543110         0           123444555 3344


Q ss_pred             ---CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhcccCC-CCcEEEEecCCCC---CCCCeee
Q 004891          387 ---DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSS-QDRIIGAHFFSPA---HVMPLLE  457 (725)
Q Consensus       387 ---~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~~-~~r~ig~h~~~p~---~~~~lve  457 (725)
                         ++|+||+|||.+..+ ..+++++.+.++++++|++.+++.+.  ..+.+.+.. ..+++++....++   ..++  .
T Consensus        65 ~l~~aDvVilavp~~~~v-~~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~--~  141 (474)
T 2iz1_A           65 SLEKPRRIMLMVQAGAAT-DATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGP--S  141 (474)
T ss_dssp             TBCSSCEEEECCCTTHHH-HHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEECSHHHHHHHCC--C
T ss_pred             hccCCCEEEEEccCchHH-HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCCCCChhhhccCC--e
Confidence               499999999965544 45668898999999988876666543  345444432 2345544222111   1112  1


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCe--------eEEEcC-Ccc----hhhhhhh---HHHHHHHHHHHHc--CCCHHHHH
Q 004891          458 IVRTERTSAQVILDLMTVGKIIKKV--------PVVVGN-CTG----FAVNRAF---FPYSQSARLLVSL--GVDVFRID  519 (725)
Q Consensus       458 ii~~~~t~~e~~~~~~~l~~~lGk~--------~v~v~d-~~G----fi~nRl~---~a~~~Ea~~l~~~--Gv~~~dID  519 (725)
                      ++++.  +++.++.++++++.+|..        +.++++ ..|    ++.|.+.   ...+.|++.+.+.  |++++++.
T Consensus       142 i~~gg--~~~~~~~v~~ll~~~g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~Gl~~~~~~  219 (474)
T 2iz1_A          142 MMPGG--QKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQ  219 (474)
T ss_dssp             EEEEE--CHHHHHHHHHHHHHHSCBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             EEecC--CHHHHHHHHHHHHHHhcccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            34443  689999999999999987        455554 223    3456553   4566799988875  89999998


Q ss_pred             HHH
Q 004891          520 SAI  522 (725)
Q Consensus       520 ~~~  522 (725)
                      .++
T Consensus       220 ~l~  222 (474)
T 2iz1_A          220 AIF  222 (474)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            887

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=99.35  E-value=2.3e-12  Score=134.48  Aligned_cols=184  Identities=15%  Similarity=0.064  Sum_probs=122.6

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      |+||+|||+|.||..+|..|++ |++|++||+++++++...+.           |             +..++..+.+++
T Consensus         1 M~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~-----------g-------------~~~~~~~~~~~~   55 (289)
T 2cvz_A            1 MEKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEE-----------F-------------GSEAVPLERVAE   55 (289)
T ss_dssp             -CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHH-----------H-------------CCEECCGGGGGG
T ss_pred             CCeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHC-----------C-------------CcccCHHHHHhC
Confidence            3589999999999999999999 99999999999887664321           1             111222255789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhcccCCC-CcEEEEecCCC-CC---CCCeeeEec
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQ-DRIIGAHFFSP-AH---VMPLLEIVR  460 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~~-~r~ig~h~~~p-~~---~~~lveii~  460 (725)
                      +|+||+|+|.+..++ .+++++.+.++++++|++.++..+  ...+.+.+... ..++.. |..+ +.   .+.+..++.
T Consensus        56 ~D~vi~~v~~~~~~~-~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~-p~~~~~~~~~~g~~~~~~~  133 (289)
T 2cvz_A           56 ARVIFTCLPTTREVY-EVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDA-PVSGGTSGAEAGTLTVMLG  133 (289)
T ss_dssp             CSEEEECCSSHHHHH-HHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEEC-CEESHHHHHHHTCEEEEEE
T ss_pred             CCEEEEeCCChHHHH-HHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEe-cCCCChhHHhhCCeEEEEC
Confidence            999999999655444 466888888889998875433322  23444444322 234433 2111 10   112222333


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEEEcCC-cc----hhhhhh---hHHHHHHHHHHHHc-CCCHHHHHHHH
Q 004891          461 TERTSAQVILDLMTVGKIIKKVPVVVGNC-TG----FAVNRA---FFPYSQSARLLVSL-GVDVFRIDSAI  522 (725)
Q Consensus       461 ~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~G----fi~nRl---~~a~~~Ea~~l~~~-Gv~~~dID~~~  522 (725)
                      +   +++.++.+.+++ .+|..++++++. .+    ++.|.+   +...++|+..+.+. |++++++..++
T Consensus       134 ~---~~~~~~~~~~ll-~~g~~~~~~~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~  200 (289)
T 2cvz_A          134 G---PEEAVERVRPFL-AYAKKVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVI  200 (289)
T ss_dssp             S---CHHHHHHHGGGC-TTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             C---CHHHHHHHHHHH-hhcCCeEEcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHH
Confidence            2   689999999999 999988888653 22    233543   34667798887765 89999988887

>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=99.34  E-value=5.3e-12  Score=132.30  Aligned_cols=138  Identities=14%  Similarity=0.070  Sum_probs=101.6

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEE
Q 004891           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (725)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav  105 (725)
                      ++++++..+...+.++.++.. .+-+|.|.-.++++. |.+-.+.          .........+ .++..+++|+|++|
T Consensus       139 G~~~~~~~~Ka~r~~~~A~~~-~~PlI~lvdt~Ga~~-g~~ae~~----------g~~~~~a~~l-~al~~~~vPvIavV  205 (327)
T 2f9i_A          139 GMAHPEGYRKALRLMKQAEKF-NRPIFTFIDTKGAYP-GKAAEER----------GQSESIATNL-IEMASLKVPVIAIV  205 (327)
T ss_dssp             GCCCHHHHHHHHHHHHHHHHT-TCCEEEEEEESCSCC-CHHHHHT----------THHHHHHHHH-HHHHTCSSCEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCCc-chhhhhh----------hhHHHHHHHH-HHHHhCCCCEEEEE
Confidence            689999999999999988866 455666643333222 2111100          1122334555 56899999999999


Q ss_pred             cccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 004891          106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT  185 (725)
Q Consensus       106 ~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~  185 (725)
                      +|.|.|||+.++++||++||+++++|++      +.|.++++..+.+..+...+.++    ..++|++|+++|+||+|+|
T Consensus       206 ~G~a~GGGa~~~~~~D~via~~~A~~~v------~~peg~a~il~~~~~~a~~A~e~----~~itA~~a~~~GlVd~VV~  275 (327)
T 2f9i_A          206 IGEGGSGGALGIGIANKVLMLENSTYSV------ISPEGAAALLWKDSNLAKIAAET----MKITAHDIKQLGIIDDVIS  275 (327)
T ss_dssp             EEEEBHHHHHTTCCCSEEEEETTCBCBS------SCHHHHHHHHSSCGGGHHHHHHH----HTCBHHHHHHTTSSSEEEC
T ss_pred             ECCcChHHHHHHHCCCEEEEcCCceEee------cCchHHHHHHHHHhcchHHHHHH----cCCCHHHHHHcCCceEEec
Confidence            9999999999999999999999999986      34555555544445555777776    7799999999999999998


Q ss_pred             c
Q 004891          186 S  186 (725)
Q Consensus       186 ~  186 (725)
                      .
T Consensus       276 e  276 (327)
T 2f9i_A          276 E  276 (327)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.34  E-value=3.2e-12  Score=134.07  Aligned_cols=140  Identities=16%  Similarity=0.115  Sum_probs=106.1

Q ss_pred             CcceEEEEc-CCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccc
Q 004891          307 GVRKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (725)
Q Consensus       307 ~~~kIaVIG-~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l  385 (725)
                      .++||+||| +|.||.++|..|+++|++|++||++++.                                    +..+.+
T Consensus        20 ~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~------------------------------------~~~~~~   63 (298)
T 2pv7_A           20 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA------------------------------------VAESIL   63 (298)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG------------------------------------GHHHHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc------------------------------------CHHHHh
Confidence            357899999 9999999999999999999999998652                                    001346


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhcccCCCCcEEEEecCCCCC----CCCeeeEe
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAH----VMPLLEIV  459 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~p~~----~~~lveii  459 (725)
                      ++||+||+|||  .....+++.++.+.++++++|++.+|+..  +..+....  +.++++.||..++.    .+..+.++
T Consensus        64 ~~aDvVilavp--~~~~~~vl~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~--~~~~v~~hP~~g~~~~~~~g~~~~l~  139 (298)
T 2pv7_A           64 ANADVVIVSVP--INLTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVH--TGAVLGLHPMFGADIASMAKQVVVRC  139 (298)
T ss_dssp             TTCSEEEECSC--GGGHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHC--SSEEEEEEECSCTTCSCCTTCEEEEE
T ss_pred             cCCCEEEEeCC--HHHHHHHHHHHHhhcCCCcEEEECCCCCcHHHHHHHHhc--CCCEEeeCCCCCCCchhhcCCeEEEe
Confidence            78999999999  55578899999998999998876544322  23333332  46899999965442    23345555


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004891          460 RTERTSAQVILDLMTVGKIIKKVPVVVGN  488 (725)
Q Consensus       460 ~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  488 (725)
                      ++.  +++.++.+.++++.+|..++++.+
T Consensus       140 ~~~--~~~~~~~v~~l~~~~G~~~~~~~~  166 (298)
T 2pv7_A          140 DGR--FPERYEWLLEQIQIWGAKIYQTNA  166 (298)
T ss_dssp             EEE--CGGGTHHHHHHHHHTTCEEEECCH
T ss_pred             cCC--CHHHHHHHHHHHHHcCCEEEECCH
Confidence            554  688899999999999998888753

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.32  E-value=4.1e-12  Score=135.53  Aligned_cols=182  Identities=16%  Similarity=0.088  Sum_probs=122.6

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHH-HHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~-~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      .+||+|||+|.||.++|..|.+.|++|+++|++++. .+.+.           +.|             +..+ +. +.+
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~-----------~~G-------------~~~~-~~~e~~   70 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAE-----------AHG-------------LKVA-DVKTAV   70 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHH-----------HTT-------------CEEE-CHHHHH
T ss_pred             CCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHH-----------HCC-------------CEEc-cHHHHH
Confidence            358999999999999999999999999999999765 33221           112             1223 33 567


Q ss_pred             cCCCEEEEeccCChHHHHHHHH-HHHHhCCCCeEEEecCCCCChHHHhccc-CCCCcEEEEecCCCCCC---------CC
Q 004891          386 KDVDMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTSTIDLNIVGEKT-SSQDRIIGAHFFSPAHV---------MP  454 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~-~l~~~~~~~~ii~s~tS~~~~~~l~~~~-~~~~r~ig~h~~~p~~~---------~~  454 (725)
                      ++||+||+|+|  ......++. ++.+.++++++|++. +++.+ .+.... .....+++.||..|...         +.
T Consensus        71 ~~aDvVilavp--~~~~~~v~~~~i~~~l~~~~ivi~~-~gv~~-~~~~~~~~~~~~vv~~~P~gp~~a~~~l~~~G~g~  146 (338)
T 1np3_A           71 AAADVVMILTP--DEFQGRLYKEEIEPNLKKGATLAFA-HGFSI-HYNQVVPRADLDVIMIAPKAPGHTVRSEFVKGGGI  146 (338)
T ss_dssp             HTCSEEEECSC--HHHHHHHHHHHTGGGCCTTCEEEES-CCHHH-HTTSSCCCTTCEEEEEEESSCSHHHHHHHHTTCCC
T ss_pred             hcCCEEEEeCC--cHHHHHHHHHHHHhhCCCCCEEEEc-CCchh-HHHhhcCCCCcEEEeccCCCCchhHHHHHhccCCC
Confidence            89999999999  555578888 898899999998865 44444 333322 12235899999777541         22


Q ss_pred             eeeEecCCCCCHHHHHHHHHHHHHcCC-e--eEEEc----C-CcchhhhhhhH----HHHHHHH-HHHHcCCCHHHH
Q 004891          455 LLEIVRTERTSAQVILDLMTVGKIIKK-V--PVVVG----N-CTGFAVNRAFF----PYSQSAR-LLVSLGVDVFRI  518 (725)
Q Consensus       455 lveii~~~~t~~e~~~~~~~l~~~lGk-~--~v~v~----d-~~Gfi~nRl~~----a~~~Ea~-~l~~~Gv~~~dI  518 (725)
                      .+-++++..+++++.+.+..+++.+|. .  ++.+.    + ...++.+..+.    .++..++ .+++.|+++++.
T Consensus       147 ~~ii~~~~~~~~~a~~~~~~l~~~lG~~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~~~Gl~~~~a  223 (338)
T 1np3_A          147 PDLIAIYQDASGNAKNVALSYACGVGGGRTGIIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMA  223 (338)
T ss_dssp             CEEEEEEECSSSCHHHHHHHHHHHTTHHHHCEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             eEEEEecCCCCHHHHHHHHHHHHHcCCCccceEeechhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH
Confidence            333566667788999999999999998 4  55552    1 22444343332    2222222 345678887654

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=99.30  E-value=2.2e-11  Score=132.61  Aligned_cols=204  Identities=17%  Similarity=0.163  Sum_probs=132.5

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHH--------HHHHHHhhHHcCCCCHHHHHHhhcCccc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT--------IEANVRGLVTRGKLTQDKANNALKMLKG  378 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~--------i~~~l~~~~~~g~~~~~~~~~~~~~i~~  378 (725)
                      .|.+|+|||+|.+|.++|..|++.|++|+++|+|+++++...+.        +...+.+.++.            +++++
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~------------g~l~~   87 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSS------------GRLSF   87 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHT------------TCEEE
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHc------------CCeeE
Confidence            57899999999999999999999999999999999998875432        12222222222            46788


Q ss_pred             ccCc-ccccCCCEEEEeccC--------ChHHHHHHHHHHHHhCC---CCeEEEecCCCCChHH---Hh-----cccCCC
Q 004891          379 VLDY-SEFKDVDMVIEAVIE--------SVPLKQKIFSELEKACP---PHCILATNTSTIDLNI---VG-----EKTSSQ  438 (725)
Q Consensus       379 ~~~~-~~l~~aDlVIeavpe--------~~~~k~~v~~~l~~~~~---~~~ii~s~tS~~~~~~---l~-----~~~~~~  438 (725)
                      +++. +++++||++|.|||.        |+.......+.|.++++   ++++|+. -||.++..   +.     +.....
T Consensus        88 tt~~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~-eSTVppGtte~~~~~~l~~~~~~~  166 (444)
T 3vtf_A           88 AESAEEAVAATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVV-KSTVPPGTTEGLVARAVAEEAGGV  166 (444)
T ss_dssp             CSSHHHHHHTSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEE-CSCCCTTTTTTHHHHHHHTTTTTC
T ss_pred             EcCHHHHHhcCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEE-eCCCCCchHHHHHHHHHHHhCCCC
Confidence            8887 568999999999974        44556666777777664   4556553 34444321   11     111111


Q ss_pred             CcEEEEecCCCCCCCCe---------eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc----CCcchhhhhhh---HHHH
Q 004891          439 DRIIGAHFFSPAHVMPL---------LEIVRTERTSAQVILDLMTVGKIIKKVPVVVG----NCTGFAVNRAF---FPYS  502 (725)
Q Consensus       439 ~r~ig~h~~~p~~~~~l---------veii~~~~t~~e~~~~~~~l~~~lGk~~v~v~----d~~Gfi~nRl~---~a~~  502 (725)
                      .-.++.   +|-...+.         --++.|. +++++.+.+..+++.+....+++.    |...++.|-+.   .+++
T Consensus       167 ~f~v~~---~PErl~eG~a~~d~~~~~riViG~-~~~~a~~~~~~ly~~~~~~~~~~~~~~AE~~Kl~eN~~ravnIa~~  242 (444)
T 3vtf_A          167 KFSVAS---NPEFLREGSALEDFFKPDRIVIGA-GDERAASFLLDVYKAVDAPKLVMKPREAELVKYASNVFLALKISFA  242 (444)
T ss_dssp             CCEEEE---CCCCCCTTSHHHHHHSCSCEEEEE-SSHHHHHHHHHHTTTSCSCEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Cceeec---CcccccCCccccccccCCcEEEcC-CCHHHHHHHHHHHhccCCCEEEechhHHHHHHHHHHHHHHHHHHHH
Confidence            112222   34333221         1133332 367888999999998876655543    33345666443   5889


Q ss_pred             HHHHHHHHc-CCCHHHHHHHH-H--hcCC
Q 004891          503 QSARLLVSL-GVDVFRIDSAI-R--SFGL  527 (725)
Q Consensus       503 ~Ea~~l~~~-Gv~~~dID~~~-~--~~G~  527 (725)
                      ||...+.+. |+++.+|-.++ .  .+|+
T Consensus       243 NEla~ice~~GiDv~eV~~a~~~d~rig~  271 (444)
T 3vtf_A          243 NEVGLLAKRLGVDTYRVFEAVGLDKRIGR  271 (444)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHTSTTSCS
T ss_pred             HHHHHHHHHcCCCHHHHHHHhccCCCCCC
Confidence            998877766 99999988887 3  4554

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=99.30  E-value=1.4e-11  Score=126.87  Aligned_cols=173  Identities=14%  Similarity=0.092  Sum_probs=113.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeC--ChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEV--NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~--~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      ||+|||+|.||.++|..|+++|++|++||+  +++.++...+           .|             +.  ++. +.++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~-----------~g-------------~~--~~~~~~~~   55 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERART-----------VG-------------VT--ETSEEDVY   55 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHH-----------HT-------------CE--ECCHHHHH
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHH-----------CC-------------Cc--CCHHHHHh
Confidence            799999999999999999999999999999  6666554321           12             11  233 5578


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh---HHHhcccCCCCcEEEEecCCCCC---CCCeeeEec
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL---NIVGEKTSSQDRIIGAHFFSPAH---VMPLLEIVR  460 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~---~~l~~~~~~~~r~ig~h~~~p~~---~~~lveii~  460 (725)
                      +||+||+|+|.+...+.  +.++.+.+++  +|++. |+..+   ..+.+.+.... ++..+++.++.   .+.. .++.
T Consensus        56 ~aDvvi~~v~~~~~~~~--~~~~~~~~~~--~vi~~-s~~~~~~~~~l~~~~~~~g-~~~~~v~~~~~~~~~g~~-~~~~  128 (264)
T 1i36_A           56 SCPVVISAVTPGVALGA--ARRAGRHVRG--IYVDI-NNISPETVRMASSLIEKGG-FVDAAIMGSVRRKGADIR-IIAS  128 (264)
T ss_dssp             TSSEEEECSCGGGHHHH--HHHHHTTCCS--EEEEC-SCCCHHHHHHHHHHCSSSE-EEEEEECSCHHHHGGGCE-EEEE
T ss_pred             cCCEEEEECCCHHHHHH--HHHHHHhcCc--EEEEc-cCCCHHHHHHHHHHHhhCC-eeeeeeeCCccccccCCe-EEec
Confidence            99999999996655433  3567777766  55443 44443   35555555443 66766665443   2223 3444


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEEEcCCcch-----hhhhhh----HHHHHHHHHHHHc-CCCHHHHHHHH
Q 004891          461 TERTSAQVILDLMTVGKIIKKVPVVVGNCTGF-----AVNRAF----FPYSQSARLLVSL-GVDVFRIDSAI  522 (725)
Q Consensus       461 ~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gf-----i~nRl~----~a~~~Ea~~l~~~-Gv~~~dID~~~  522 (725)
                      ++.  .   +.+++ ++.+|+.++++++.+|.     +.++.+    ...++|++.+.+. |++++.+ ..+
T Consensus       129 g~~--~---~~~~~-l~~~g~~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~-~~~  193 (264)
T 1i36_A          129 GRD--A---EEFMK-LNRYGLNIEVRGREPGDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEEDVL-EML  193 (264)
T ss_dssp             STT--H---HHHHG-GGGGTCEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH-HHH
T ss_pred             CCc--H---HHhhh-HHHcCCeeEECCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH-HHH
Confidence            542  2   67788 99999998888864553     233332    4556788887755 8987644 444

>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.30  E-value=9.3e-12  Score=130.83  Aligned_cols=138  Identities=14%  Similarity=0.038  Sum_probs=106.6

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEE
Q 004891           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (725)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav  105 (725)
                      ++++++..+...++++.++.. .+-+|.|.-.++++. |....+.          .........+ .++..+++|+|++|
T Consensus       153 G~~~~~~~~Ka~r~~~~A~~~-~lPlI~lvDt~Ga~~-g~~aE~~----------g~~~~~a~~l-~al~~~~vPvIavV  219 (339)
T 2f9y_A          153 GMPAPEGYRKALRLMQMAERF-KMPIITFIDTPGAYP-GVGAEER----------GQSEAIARNL-REMSRLGVPVVCTV  219 (339)
T ss_dssp             GCCCHHHHHHHHHHHHHHHHT-TCCEEEEEEESCSCC-SHHHHHT----------THHHHHHHHH-HHHHTCSSCEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCcc-chHHHHH----------HHHHHHHHHH-HHHHhCCCCEEEEE
Confidence            689999999999999988765 455666643333322 2111110          1122334555 56899999999999


Q ss_pred             cccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 004891          106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT  185 (725)
Q Consensus       106 ~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~  185 (725)
                      +|.|.|||+.++++||++||.++++|++      +.|.++++.++++..+...|.++    ..++|++|+++|+||+|+|
T Consensus       220 ~G~a~GGGa~~~~~~D~via~p~A~~~v------~~Peg~asil~~~~~~~~~Aae~----~~itA~~a~~~GlVd~VV~  289 (339)
T 2f9y_A          220 IGEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAPLAAEA----MGIIRPRLKELKLIDSIIP  289 (339)
T ss_dssp             EEEEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHHHHHHH----HTCSHHHHHTTTSCSCCCC
T ss_pred             eCCcCcHHHHHHhccCeeeecCCCEEEe------eccchHHHHHHHhhccHHHHHHH----cCCCHHHHHHcCCeeEEec
Confidence            9999999999999999999999999997      45777777777777787888887    6799999999999999998


Q ss_pred             c
Q 004891          186 S  186 (725)
Q Consensus       186 ~  186 (725)
                      .
T Consensus       290 e  290 (339)
T 2f9y_A          290 E  290 (339)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=99.27  E-value=1.3e-11  Score=122.52  Aligned_cols=157  Identities=15%  Similarity=0.162  Sum_probs=112.8

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       309 ~kIaVIG-~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      +||+||| +|.||..++..|++.|++|+++|+++++.+...+.+..    .+..            ..+.. ++. +.++
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~----~~~~------------~~~~~-~~~~~~~~   63 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRR----IAGD------------ASITG-MKNEDAAE   63 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHH----HHSS------------CCEEE-EEHHHHHH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc----cccc------------CCCCh-hhHHHHHh
Confidence            3799999 99999999999999999999999999887665432211    1110            11222 233 5578


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC--------------hHHHhcccCCCCcEEEEecCCCC--
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--------------LNIVGEKTSSQDRIIGAHFFSPA--  450 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--------------~~~l~~~~~~~~r~ig~h~~~p~--  450 (725)
                      +||+||.|+|  .....+++.++.+.++ ++++++.++++.              ..++++.+. ..+++..|+..|.  
T Consensus        64 ~~D~Vi~~~~--~~~~~~~~~~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~-~~~~v~~~~~~~~~~  139 (212)
T 1jay_A           64 ACDIAVLTIP--WEHAIDTARDLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLE-SEKVVSALHTIPAAR  139 (212)
T ss_dssp             HCSEEEECSC--HHHHHHHHHHTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHT-CSCEEECCTTCCHHH
T ss_pred             cCCEEEEeCC--hhhHHHHHHHHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCC-CCeEEEEccchHHHH
Confidence            8999999999  4445678888777664 888888888665              466666654 3578777644332  


Q ss_pred             -----CCCCeeeEecCCCCCHHHHHHHHHHHHHc-CCeeEEEcC
Q 004891          451 -----HVMPLLEIVRTERTSAQVILDLMTVGKII-KKVPVVVGN  488 (725)
Q Consensus       451 -----~~~~lveii~~~~t~~e~~~~~~~l~~~l-Gk~~v~v~d  488 (725)
                           ....+..+++++  +++.++.+.++++.+ |+.++++++
T Consensus       140 ~~~~~~~~~~~~~~~g~--~~~~~~~v~~l~~~~~G~~~~~~~~  181 (212)
T 1jay_A          140 FANLDEKFDWDVPVCGD--DDESKKVVMSLISEIDGLRPLDAGP  181 (212)
T ss_dssp             HHCTTCCCCEEEEEEES--CHHHHHHHHHHHHHSTTEEEEEEES
T ss_pred             hhCcCCCCCccEEEECC--cHHHHHHHHHHHHHcCCCCceeccc
Confidence                 112245566665  689999999999999 999999876

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=99.25  E-value=3e-11  Score=134.71  Aligned_cols=194  Identities=12%  Similarity=0.059  Sum_probs=128.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc-
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK-  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~-  386 (725)
                      +||+|||+|.||..+|..|+++|++|++||+++++++...+..          |... .     ...+..++++ +.++ 
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~----------g~~~-~-----~~~i~~~~~~~e~v~~   65 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKAN----------ASAP-F-----AGNLKAFETMEAFAAS   65 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHT----------TTST-T-----GGGEEECSCHHHHHHH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc----------CCCC-C-----CCCeEEECCHHHHHhc
Confidence            3799999999999999999999999999999999877654310          1000 0     0124445555 3333 


Q ss_pred             --CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhcccC-CCCcEEEEecCCCCC---CCCeeeE
Q 004891          387 --DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFFSPAH---VMPLLEI  458 (725)
Q Consensus       387 --~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~-~~~r~ig~h~~~p~~---~~~lvei  458 (725)
                        ++|+||+|||....+ ..+++++.+.++++++|++.+++.+.  ..+.+.+. ....+++.....++.   .++  .+
T Consensus        66 l~~aDvVilaVp~~~~v-~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~--~i  142 (478)
T 1pgj_A           66 LKKPRKALILVQAGAAT-DSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP--AF  142 (478)
T ss_dssp             BCSSCEEEECCCCSHHH-HHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCC--EE
T ss_pred             ccCCCEEEEecCChHHH-HHHHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeeccCCHHHHhcCC--eE
Confidence              599999999965444 45668888999999988876666543  24444443 233455443222111   122  23


Q ss_pred             ecCCCCCHHHHHHHHHHHHHcCCe-------eEEEcC-Ccc----hhhhhhh---HHHHHHHHHHHHc-CCCHHHHHHHH
Q 004891          459 VRTERTSAQVILDLMTVGKIIKKV-------PVVVGN-CTG----FAVNRAF---FPYSQSARLLVSL-GVDVFRIDSAI  522 (725)
Q Consensus       459 i~~~~t~~e~~~~~~~l~~~lGk~-------~v~v~d-~~G----fi~nRl~---~a~~~Ea~~l~~~-Gv~~~dID~~~  522 (725)
                      +.+.  +++.++.++++++.+|..       ++++++ ..|    ++.|.+.   ..++.|+..+.+. |++++++..++
T Consensus       143 ~~gg--~~~~~~~v~~ll~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~G~~~~~~~~l~  220 (478)
T 1pgj_A          143 FPGG--TLSVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVL  220 (478)
T ss_dssp             EEEE--CHHHHHHHHHHHHHHSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             eccC--CHHHHHHHHHHHHHhcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            4443  589999999999999987       556654 222    2345443   3567799887766 89999988887


Q ss_pred             H
Q 004891          523 R  523 (725)
Q Consensus       523 ~  523 (725)
                      .
T Consensus       221 ~  221 (478)
T 1pgj_A          221 E  221 (478)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.23  E-value=3.4e-11  Score=122.55  Aligned_cols=165  Identities=13%  Similarity=0.102  Sum_probs=101.0

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHH-HHHHH-HHHHHH-HHhhHHcCCCCHHHHHHhhcCcccccCcc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY-LLKGI-KTIEAN-VRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~-~~~~~-~~i~~~-l~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (725)
                      ..+||+|||+|.||.+||..|+++|++|++||++++. +.+.. ..+.+. +..+.+           ..+.....+..+
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~e   86 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLP-----------EHPHVHLAAFAD   86 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGG-----------GSTTCEEEEHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHh-----------hcCceeccCHHH
Confidence            4579999999999999999999999999999999886 11100 000000 001111           112223333336


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHH-HHhCCCCeEEEecCCCC----------------Ch-HHHhcccCCCCcEEE-E
Q 004891          384 EFKDVDMVIEAVIESVPLKQKIFSEL-EKACPPHCILATNTSTI----------------DL-NIVGEKTSSQDRIIG-A  444 (725)
Q Consensus       384 ~l~~aDlVIeavpe~~~~k~~v~~~l-~~~~~~~~ii~s~tS~~----------------~~-~~l~~~~~~~~r~ig-~  444 (725)
                      .+++||+||.|||.+.  ..+++.++ .+.+ ++++|++.+.++                .+ ..+.+.+. ..+++. +
T Consensus        87 ~~~~aDvVilavp~~~--~~~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~-~~~vv~~~  162 (245)
T 3dtt_A           87 VAAGAELVVNATEGAS--SIAALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFP-EAKVVKTL  162 (245)
T ss_dssp             HHHHCSEEEECSCGGG--HHHHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHST-TSEEEECS
T ss_pred             HHhcCCEEEEccCcHH--HHHHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCC-CCeEEEee
Confidence            7789999999999443  34666677 6666 778887766321                22 23444443 345554 4


Q ss_pred             ecCCCC--------CCCCeeeEecCCCCCHHHHHHHHHHHHHcCCe-eEEEcC
Q 004891          445 HFFSPA--------HVMPLLEIVRTERTSAQVILDLMTVGKIIKKV-PVVVGN  488 (725)
Q Consensus       445 h~~~p~--------~~~~lveii~~~~t~~e~~~~~~~l~~~lGk~-~v~v~d  488 (725)
                      ++...+        ...++..++.|.  ++++.+.++++++.+|.. ++.+++
T Consensus       163 ~~~~a~v~~~~~~a~~g~~~~~v~g~--d~~~~~~v~~ll~~~g~~~~~~~G~  213 (245)
T 3dtt_A          163 NTMNASLMVDPGRAAGGDHSVFVSGN--DAAAKAEVATLLKSLGHQDVIDLGD  213 (245)
T ss_dssp             TTSCHHHHHCGGGTGGGCCCEEEECS--CHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred             cccCHHHhcCccccCCCCeeEEEECC--CHHHHHHHHHHHHHcCCCceeccCc
Confidence            443211        112233344454  699999999999999975 477776

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=99.22  E-value=2.3e-11  Score=136.01  Aligned_cols=191  Identities=13%  Similarity=0.068  Sum_probs=127.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcc-cc--
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EF--  385 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l--  385 (725)
                      +||+|||+|.||..+|..|+++|++|++||+++++++...+.      .  ..|           ..+..+++++ .+  
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~------~--~~g-----------~gi~~~~~~~e~v~~   63 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLAN------E--AKG-----------TKVLGAHSLEEMVSK   63 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHT------T--TTT-----------SSCEECSSHHHHHHH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhc------c--ccC-----------CCeEEeCCHHHHHhh
Confidence            479999999999999999999999999999999987765320      0  001           1234455553 33  


Q ss_pred             -cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhcccC-CCCcEEEEecCCCCC---CCCeeeE
Q 004891          386 -KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPAH---VMPLLEI  458 (725)
Q Consensus       386 -~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~-~~~r~ig~h~~~p~~---~~~lvei  458 (725)
                       +++|+||+|||....+ ..++.++.+.++++++|++.+++.+..  .+.+.+. ....++++..+.++.   .++  .+
T Consensus        64 l~~aDvVilaVp~~~~v-~~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g~~~~a~~g~--~i  140 (482)
T 2pgd_A           64 LKKPRRIILLVKAGQAV-DNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGP--SL  140 (482)
T ss_dssp             BCSSCEEEECSCTTHHH-HHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC--EE
T ss_pred             ccCCCEEEEeCCChHHH-HHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCCCChhhhccCC--eE
Confidence             5899999999965444 456688889999999888766665532  3443332 233455543222111   112  23


Q ss_pred             ecCCCCCHHHHHHHHHHHHHcCCee-------EEEcC-Ccc----hhhhhhh---HHHHHHHHHHHHc--CCCHHHHHHH
Q 004891          459 VRTERTSAQVILDLMTVGKIIKKVP-------VVVGN-CTG----FAVNRAF---FPYSQSARLLVSL--GVDVFRIDSA  521 (725)
Q Consensus       459 i~~~~t~~e~~~~~~~l~~~lGk~~-------v~v~d-~~G----fi~nRl~---~a~~~Ea~~l~~~--Gv~~~dID~~  521 (725)
                      +.+.  +++.++.++++++.+|..+       +++++ ..|    ++.|.+.   ...++|+..+.+.  |++++++..+
T Consensus       141 ~~gg--~~e~~~~v~~ll~~~g~~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~  218 (482)
T 2pgd_A          141 MPGG--NKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKA  218 (482)
T ss_dssp             EEEE--CTTTHHHHHHHHHHHSCBCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred             EeCC--CHHHHHHHHHHHHHhhhhccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHH
Confidence            4433  4778899999999999876       44432 223    3456553   4567799887764  8899999888


Q ss_pred             HH
Q 004891          522 IR  523 (725)
Q Consensus       522 ~~  523 (725)
                      +.
T Consensus       219 ~~  220 (482)
T 2pgd_A          219 FE  220 (482)
T ss_dssp             HH
T ss_pred             HH
Confidence            73

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=99.20  E-value=1.7e-11  Score=143.02  Aligned_cols=87  Identities=15%  Similarity=0.167  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCCC-CCCCHH
Q 004891          622 KEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF-FKPSRF  700 (725)
Q Consensus       622 ~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~-~~p~~~  700 (725)
                      ..+.||++.++++|++.++++| + ++++||.++ .++|||+   |||+++|.+|+|+.+++++.+.+.++++ |.| ++
T Consensus       495 Gfi~Nril~~~~~Ea~~l~~~G-~-~~e~id~~~-~~~g~p~---Gp~~l~D~vGld~~~~i~~~~~~~~~~~~~~~-~~  567 (725)
T 2wtb_A          495 GFAVNRMFFPYTQAAMFLVECG-A-DPYLIDRAI-SKFGMPM---GPFRLCDLVGFGVAIATATQFIENFSERTYKS-MI  567 (725)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTT-C-CHHHHHHHH-HHHTCSS---CHHHHHHHHCHHHHHHHHHHHHHHSGGGCCCC-TH
T ss_pred             cHHHHHHHHHHHHHHHHHHHCC-C-CHHHHHHHH-HHcCCCC---CHHHHHHHhchHHHHHHHHHHHHhcCCccCCh-HH
Confidence            3589999999999999999999 4 799999999 8999999   9999999999999999999999888877 888 89


Q ss_pred             HHHHH-------HcCCCCCCCC
Q 004891          701 LEERA-------TKGIPLSAPV  715 (725)
Q Consensus       701 l~~~~-------~~g~gf~~~~  715 (725)
                      +++|+       |+|+|||+|+
T Consensus       568 l~~~v~~g~lG~k~g~GfY~y~  589 (725)
T 2wtb_A          568 IPLMQEDKRAGEATRKGFYLYD  589 (725)
T ss_dssp             HHHHHTTC--------------
T ss_pred             HHHHHHCCCceecCCceeEeCC
Confidence            99998       7899999994

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=99.19  E-value=4.5e-11  Score=118.51  Aligned_cols=135  Identities=13%  Similarity=0.075  Sum_probs=100.2

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      ..+||+|||+|.||+++|..|+++|++|++||++++                                         .++
T Consensus        18 ~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~-----------------------------------------~~~   56 (209)
T 2raf_A           18 QGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ-----------------------------------------ATT   56 (209)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC-----------------------------------------CSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH-----------------------------------------Hhc
Confidence            457899999999999999999999999999998854                                         356


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC---------------hHHHhcccCCCCcEEE-EecCCCC
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID---------------LNIVGEKTSSQDRIIG-AHFFSPA  450 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~---------------~~~l~~~~~~~~r~ig-~h~~~p~  450 (725)
                      +||+||+|+|  .....++++++.+.++ ++++++.+++++               ...+++.+. ..+++. .|+...|
T Consensus        57 ~aD~vi~av~--~~~~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~-~~~vv~~~~~~~~p  132 (209)
T 2raf_A           57 LGEIVIMAVP--YPALAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP-DSQVLKAFNTTFAA  132 (209)
T ss_dssp             CCSEEEECSC--HHHHHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT-TSEEEECSTTSCHH
T ss_pred             cCCEEEEcCC--cHHHHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC-CCcEEEeeecccHh
Confidence            8999999999  6666788888888777 888888777654               234444443 356777 5654222


Q ss_pred             C------C--CCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004891          451 H------V--MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN  488 (725)
Q Consensus       451 ~------~--~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  488 (725)
                      .      .  .+...++.+  .+++..+.++++++.+|..++.+++
T Consensus       133 ~~~~~~~~g~~~~~~~~~g--~~~~~~~~v~~ll~~~G~~~~~~~~  176 (209)
T 2raf_A          133 TLQSGQVNGKEPTTVLVAG--NDDSAKQRFTRALADSPLEVKDAGK  176 (209)
T ss_dssp             HHHHSEETTTEECEEEEEE--SCHHHHHHHHHHTTTSSCEEEEEES
T ss_pred             hccccccCCCCCceeEEcC--CCHHHHHHHHHHHHHcCCceEeCCC
Confidence            1      1  122222333  3689999999999999999998877

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=99.18  E-value=1.2e-11  Score=144.39  Aligned_cols=87  Identities=17%  Similarity=0.248  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCCCCCCC--HH
Q 004891          623 EIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPS--RF  700 (725)
Q Consensus       623 ~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~--~~  700 (725)
                      .+.||++.++++|++.++++| + ++++||.++ .++|||+   |||+++|.+|+|+.+++++.+.+.++++|.|+  ++
T Consensus       498 fi~Nril~~~~~Ea~~l~~~G-~-~~~~id~~~-~~~G~p~---Gp~~l~D~vGld~~~~i~~~~~~~~~~~~~~~~~~~  571 (715)
T 1wdk_A          498 FLVNRVLFPYFGGFAKLVSAG-V-DFVRIDKVM-EKFGWPM---GPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSA  571 (715)
T ss_dssp             TTHHHHHHHHHHHHHHHHHTT-C-CHHHHHHHH-HHHTCSS---CHHHHHHHHCHHHHHHHHHHHHHHCHHHHCCSSCCH
T ss_pred             hhhhHHHHHHHHHHHHHHHCC-C-CHHHHHHHH-HHcCCCC---CHHHHHHHhhHHHHHHHHHHHHHhcCCccCCChHHH
Confidence            589999999999999999999 4 799999999 8999999   99999999999999999999998887889998  89


Q ss_pred             HHHHH-------HcCCCCCCCC
Q 004891          701 LEERA-------TKGIPLSAPV  715 (725)
Q Consensus       701 l~~~~-------~~g~gf~~~~  715 (725)
                      |++|+       |+|+|||+|+
T Consensus       572 l~~~v~~g~lG~k~g~GfY~y~  593 (715)
T 1wdk_A          572 IDALYEAKRLGQKNGKGFYAYE  593 (715)
T ss_dssp             HHHHHHTTCCBTTTTBSSSEEC
T ss_pred             HHHHHhCchhhhcCCcEEEecc
Confidence            99998       7899999995

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=99.18  E-value=2.8e-11  Score=128.33  Aligned_cols=122  Identities=17%  Similarity=0.236  Sum_probs=89.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      +||+|||+|.||.++|..++..|+ +|++||++++.++.....+.+......            ...+++.+++++++++
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~------------~~~~i~~t~d~~al~~   82 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIG------------SPAKIFGENNYEYLQN   82 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHT------------CCCCEEEESCGGGGTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccC------------CCCEEEECCCHHHHCC
Confidence            589999999999999999999999 999999999988864434433322110            1246777788888999


Q ss_pred             CCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCeEE--EecCCCCChHHHhcccC--CCCcEEEE
Q 004891          388 VDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCIL--ATNTSTIDLNIVGEKTS--SQDRIIGA  444 (725)
Q Consensus       388 aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii--~s~tS~~~~~~l~~~~~--~~~r~ig~  444 (725)
                      ||+||+++  |+            +..+++++++++.+++ |++++  +||++... +.++....  .|.|++|+
T Consensus        83 aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~-t~~~~~~~~~~~~rviG~  155 (328)
T 2hjr_A           83 SDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICITNPLDAM-VYYFKEKSGIPANKVCGM  155 (328)
T ss_dssp             CSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHH-HHHHHHHHCCCGGGEEES
T ss_pred             CCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEecCchHHH-HHHHHHhcCCChhhEEEe
Confidence            99999998  54            4577999999999998 66655  46654432 33333222  46677775

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=99.18  E-value=1.9e-11  Score=121.80  Aligned_cols=149  Identities=13%  Similarity=0.127  Sum_probs=100.6

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      .++||+|||+|.||..+|..|++.|++|+++|+++++++...           +.|             +..++..+.++
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~-----------~~g-------------~~~~~~~~~~~   82 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLF-----------PSA-------------AQVTFQEEAVS   82 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHS-----------BTT-------------SEEEEHHHHTT
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcC-------------CceecHHHHHh
Confidence            456899999999999999999999999999999988765431           111             22222225678


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHh----------cccCCCCcEEEEecCCCCC-----
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG----------EKTSSQDRIIGAHFFSPAH-----  451 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~----------~~~~~~~r~ig~h~~~p~~-----  451 (725)
                      ++|+||+|+|..  ....+++ +.+.. ++++|++.+++.+.+.+.          +.+. ..+++.. + ++..     
T Consensus        83 ~~DvVi~av~~~--~~~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~-~~~vv~~-~-n~~~~~~~~  155 (215)
T 2vns_A           83 SPEVIFVAVFRE--HYSSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFP-TCTVVKA-F-NVISAWTLQ  155 (215)
T ss_dssp             SCSEEEECSCGG--GSGGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCT-TSEEEEE-C-TTBCHHHHH
T ss_pred             CCCEEEECCChH--HHHHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCC-CCeEEec-c-ccccHhHhc
Confidence            999999999943  3344554 55555 788888888888765442          2232 2345542 1 2211     


Q ss_pred             ----CCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004891          452 ----VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN  488 (725)
Q Consensus       452 ----~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  488 (725)
                          ..+...++.+  .+++.++.++++++.+|..++++++
T Consensus       156 ~~~~~g~~~~~~~g--~~~~~~~~v~~ll~~~G~~~~~~g~  194 (215)
T 2vns_A          156 AGPRDGNRQVPICG--DQPEAKRAVSEMALAMGFMPVDMGS  194 (215)
T ss_dssp             TCSCSSCCEEEEEE--SCHHHHHHHHHHHHHTTCEEEECCS
T ss_pred             ccccCCceeEEEec--CCHHHHHHHHHHHHHcCCceEeecc
Confidence                1111122333  2799999999999999999999976

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=99.17  E-value=4.1e-11  Score=129.49  Aligned_cols=170  Identities=12%  Similarity=0.016  Sum_probs=104.6

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      |+||+|||+|.||.++|..|+++|++|++||++++.++...+..       .....+...   .....+..+++. +.++
T Consensus        15 M~kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~-------~~~~~~~~~---~~~~~~~~~~~~~~~~~   84 (366)
T 1evy_A           15 LNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKR-------ENVLFLKGV---QLASNITFTSDVEKAYN   84 (366)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHT-------BCTTTSTTC---BCCTTEEEESCHHHHHT
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcC-------ccccccccc---ccccceeeeCCHHHHHc
Confidence            45999999999999999999999999999999998876653210       000000000   000134445555 4578


Q ss_pred             CCCEEEEeccCChHHHHHHHHH----HHHhCCC-CeEEEecCCCCChHH---HhcccCC--CC-c-EEEEecCCCCC--C
Q 004891          387 DVDMVIEAVIESVPLKQKIFSE----LEKACPP-HCILATNTSTIDLNI---VGEKTSS--QD-R-IIGAHFFSPAH--V  452 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~----l~~~~~~-~~ii~s~tS~~~~~~---l~~~~~~--~~-r-~ig~h~~~p~~--~  452 (725)
                      +||+||+|||  .....+++.+    +.+.+++ +++|++.++++.+..   +.+.+..  +. . .+...|..+..  .
T Consensus        85 ~aDvVilav~--~~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~gp~~~~~~~~  162 (366)
T 1evy_A           85 GAEIILFVIP--TQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVAT  162 (366)
T ss_dssp             TCSSEEECCC--HHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHHHT
T ss_pred             CCCEEEECCC--hHHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeCCChHHHHHh
Confidence            9999999999  4677788888    8888888 888888776665531   1111111  11 1 11111111110  0


Q ss_pred             CCeeeEecCCCCCHHHHHHHHHHHHHc--CCeeEEEcCCc
Q 004891          453 MPLLEIVRTERTSAQVILDLMTVGKII--KKVPVVVGNCT  490 (725)
Q Consensus       453 ~~lveii~~~~t~~e~~~~~~~l~~~l--Gk~~v~v~d~~  490 (725)
                      .....++.+ ..+++..+.+.+++...  |..+++..+..
T Consensus       163 g~~~~~~~~-~~~~~~~~~v~~ll~~~g~g~~~~~~~di~  201 (366)
T 1evy_A          163 GVFTCVSIA-SADINVARRLQRIMSTGDRSFVCWATTDTV  201 (366)
T ss_dssp             TCCEEEEEE-CSSHHHHHHHHHHHSCTTSSEEEEEESCHH
T ss_pred             CCceEEEEe-cCCHHHHHHHHHHhcCCCCeEEEEEcCCch
Confidence            111112222 23678899999999999  77666666643

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=99.17  E-value=2.1e-10  Score=125.16  Aligned_cols=200  Identities=17%  Similarity=0.167  Sum_probs=122.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHh----hcCcccccCc-c
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNA----LKMLKGVLDY-S  383 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~----~~~i~~~~~~-~  383 (725)
                      +||+|||+|.||.++|..|++ |++|++||+++++++...+.          ...+.....+..    ..++..++++ +
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~----------~~~i~e~~l~~~~~~~~~~l~~t~~~~~   69 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNG----------LSPIQDEYIEYYLKSKQLSIKATLDSKA   69 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTT----------CCSSCCHHHHHHHHHSCCCEEEESCHHH
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcC----------CCCcCCCCHHHHHHhccCcEEEeCCHHH
Confidence            379999999999999999999 99999999999987764321          001111111111    1245666666 5


Q ss_pred             cccCCCEEEEeccCCh---------HHHHHHHHHHHHhCCCCeEEEe-cCCCCCh-HHHhcccCCCCcEEEEec--CCCC
Q 004891          384 EFKDVDMVIEAVIESV---------PLKQKIFSELEKACPPHCILAT-NTSTIDL-NIVGEKTSSQDRIIGAHF--FSPA  450 (725)
Q Consensus       384 ~l~~aDlVIeavpe~~---------~~k~~v~~~l~~~~~~~~ii~s-~tS~~~~-~~l~~~~~~~~r~ig~h~--~~p~  450 (725)
                      .+++||+||.|||...         ....++++.+.+ ++++++|+. +|..... ..+.+.+...  .+...|  ..|.
T Consensus        70 ~~~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~--~v~~~Pe~~~~G  146 (402)
T 1dlj_A           70 AYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD--RIIFSPEFLRES  146 (402)
T ss_dssp             HHHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS--CEEECCCCCCTT
T ss_pred             HhcCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC--eEEECCccccCc
Confidence            6789999999999764         256777888888 788888775 3333332 2444443322  222222  1111


Q ss_pred             CCC-Cee---eEecCCCCC-----HHHHHHHHHHHHH-cCC-e-eEEEcCC-----cchhhhhhh---HHHHHHHHHHHH
Q 004891          451 HVM-PLL---EIVRTERTS-----AQVILDLMTVGKI-IKK-V-PVVVGNC-----TGFAVNRAF---FPYSQSARLLVS  510 (725)
Q Consensus       451 ~~~-~lv---eii~~~~t~-----~e~~~~~~~l~~~-lGk-~-~v~v~d~-----~Gfi~nRl~---~a~~~Ea~~l~~  510 (725)
                      ... ...   .++.|....     .+..+.+.+++.. ..+ . ++++++.     ..++.|-+.   .+++||+..+.+
T Consensus       147 ~a~~~~~~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~  226 (402)
T 1dlj_A          147 KALYDNLYPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAE  226 (402)
T ss_dssp             STTHHHHSCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhcccCCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            110 001   134333221     1556777777765 332 2 5666552     234556442   577899888876


Q ss_pred             c-CCCHHHHHHHH
Q 004891          511 L-GVDVFRIDSAI  522 (725)
Q Consensus       511 ~-Gv~~~dID~~~  522 (725)
                      . |+++.++-.++
T Consensus       227 ~~Gid~~~v~~~~  239 (402)
T 1dlj_A          227 SRKLNSHMIIQGI  239 (402)
T ss_dssp             HTTCCHHHHHHHH
T ss_pred             HhCCCHHHHHHHh
Confidence            6 99999998887

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=99.16  E-value=5.6e-11  Score=138.00  Aligned_cols=120  Identities=14%  Similarity=0.153  Sum_probs=97.3

Q ss_pred             CHHHHHHHHHHHHHcCCeeEEEcCCcchhhhhhhHHHHHHHHHHHHcCC--CHHHHHHHH-HhcCCCc---cHHHHHHhh
Q 004891          465 SAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQLLDLA  538 (725)
Q Consensus       465 ~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a~~~Ea~~l~~~Gv--~~~dID~~~-~~~G~p~---Gpf~~~D~~  538 (725)
                      +++..+.+..+-...+...-...  ..-|..|++++++||+++++++|+  ++.|||.++ .|+|||.   |||+++|.+
T Consensus       612 ~~~~~~~~~~~~~~~~~~~~~~~--~~ei~~R~l~~~~nEa~~~l~egI~~~~~diD~a~~~G~Gfp~~~GGp~~~~D~~  689 (742)
T 3zwc_A          612 DPWLSTFLSQYREVHHIEQRTIS--KEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASV  689 (742)
T ss_dssp             CHHHHHHHHHHHHHHTCCCCCCC--HHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHSCCCGGGCCHHHHHHHH
T ss_pred             ChHHHHHHHHHhhhcCCCcCCCC--HHHHHHHHHHHHHHHHHHHhhcCcCCCHHHHHHHHHhCcCCCCCcCCHHHHHHHH
Confidence            45554444444443332221111  123789999999999999999997  899999999 9999998   999999999


Q ss_pred             chHHHHHHHHHHHhhCCC--CCCCcHHHHHHHHcCCCccccCceeeeccC
Q 004891          539 GYGVAAATSKEFDKAFPD--RSFQSPLVDLLLKSGRNGKANGKGLYTYEK  586 (725)
Q Consensus       539 Gld~~~~~~~~l~~~~~~--~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~  586 (725)
                      |++.+...++.+...+|+  ++.|+++|++|+++|....+.++|||.+.+
T Consensus       690 G~~~~v~~l~~l~~~~g~~~~~~P~~~L~~ma~~G~~~f~~~~~~~~~~~  739 (742)
T 3zwc_A          690 GLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQGSPPLKEWQSLAGPHG  739 (742)
T ss_dssp             CHHHHHHHHHHHHHHCTTCGGGSCCHHHHHHHHTTCCCGGGHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHHHcCCCCccCCCHHHHHHHHcCCCcccccccccCCCC
Confidence            999999999999999997  344999999999999998888899988754

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=99.15  E-value=1.5e-11  Score=134.72  Aligned_cols=90  Identities=19%  Similarity=0.241  Sum_probs=74.6

Q ss_pred             cchhhhhhhHHHHHHHHHHHHcCC--CHHHHHHHH-HhcCCCc---cHHHHHHhhchHHHHHHHHHHHhhCCCC--CCCc
Q 004891          490 TGFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQS  561 (725)
Q Consensus       490 ~Gfi~nRl~~a~~~Ea~~l~~~Gv--~~~dID~~~-~~~G~p~---Gpf~~~D~~Gld~~~~~~~~l~~~~~~~--~~~~  561 (725)
                      ...+.+|++.+++||+++++++|+  ++.|||.++ .|+|||.   |||+++|.+|++.+...++.|...+|++  +.|+
T Consensus       355 ~~~i~~r~l~~~~nea~~~l~egi~~~~~diD~~~~~G~GfP~~~GGp~~~~d~~G~~~~~~~l~~l~~~~g~~~~~~p~  434 (460)
T 3k6j_A          355 DQDVINFMLYPTVNEGYRCIEEGVISNESLIDIMFILGFGWPIHSGGPMRFGKTEGLDKIANMLVHWSSLEPKESAYIVA  434 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTCCCSEETTEECBCSSCBSSHHHHHHHHHHHHHCTTCGGGSCC
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhHHHHhcCCCCccccCHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            457899999999999999999997  699999999 9999998   9999999999999999999999999998  4599


Q ss_pred             HHHHHHHHcCCCccccCc
Q 004891          562 PLVDLLLKSGRNGKANGK  579 (725)
Q Consensus       562 ~~l~~~v~~g~~G~k~g~  579 (725)
                      ++|++|+++|++|.|||.
T Consensus       435 ~~L~~~a~~g~~~~~~~~  452 (460)
T 3k6j_A          435 DALKTANVSTGSSGSSGG  452 (460)
T ss_dssp             HHHHHHC-----------
T ss_pred             HHHHHHHHcCCCccccCC
Confidence            999999999999999984

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=99.12  E-value=6.6e-11  Score=125.02  Aligned_cols=124  Identities=20%  Similarity=0.296  Sum_probs=89.0

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l  385 (725)
                      +++||+|||+|.||.++|..++..|+ +|+++|+++++++.....+.+.+....            ...+++.+++++++
T Consensus         3 ~~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~------------~~~~i~~t~d~~al   70 (322)
T 1t2d_A            3 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAY------------SNCKVSGSNTYDDL   70 (322)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHT------------CCCCEEEECCGGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcC------------CCcEEEECCCHHHh
Confidence            35699999999999999999999999 999999999988765444443332111            12356777788889


Q ss_pred             cCCCEEEEec--cCCh-----------------HHHHHHHHHHHHhCCCCeEE--EecCCCCChHHHhcccC--CCCcEE
Q 004891          386 KDVDMVIEAV--IESV-----------------PLKQKIFSELEKACPPHCIL--ATNTSTIDLNIVGEKTS--SQDRII  442 (725)
Q Consensus       386 ~~aDlVIeav--pe~~-----------------~~k~~v~~~l~~~~~~~~ii--~s~tS~~~~~~l~~~~~--~~~r~i  442 (725)
                      ++||+||+++  |++.                 .+++++++++.+++ |++++  +||++.+. +.+.....  .+.|++
T Consensus        71 ~~aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP~~~~-t~~~~~~~g~~~~rvi  148 (322)
T 1t2d_A           71 AGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPVDVM-VQLLHQHSGVPKNKII  148 (322)
T ss_dssp             TTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHHHH-HHHHHHHHCCCGGGEE
T ss_pred             CCCCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCChHHH-HHHHHHhcCCChHHEE
Confidence            9999999998  6432                 47889999999998 66655  45554443 33333322  456777


Q ss_pred             EE
Q 004891          443 GA  444 (725)
Q Consensus       443 g~  444 (725)
                      |+
T Consensus       149 G~  150 (322)
T 1t2d_A          149 GL  150 (322)
T ss_dssp             EC
T ss_pred             ec
Confidence            75

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=99.10  E-value=8.9e-11  Score=126.20  Aligned_cols=171  Identities=16%  Similarity=0.030  Sum_probs=107.5

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCC-------CcEEEEeCChH-----HHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNN-------IYVVLKEVNSE-----YLLKGIKTIEANVRGLVTRGKLTQDKANNALK  374 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G-------~~V~~~d~~~e-----~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~  374 (725)
                      .++||+|||+|.||+++|..|+++|       ++|++||++++     .++...+.       .........   .....
T Consensus         7 ~~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~-------~~~~~~~~~---~~~~~   76 (354)
T 1x0v_A            7 ASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQ-------HENVKYLPG---HKLPP   76 (354)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHH-------SCCTTTSTT---CCCCT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhc-------CcccccCCc---ccCcc
Confidence            3469999999999999999999999       99999999987     65543210       000000000   00012


Q ss_pred             CcccccCc-ccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh--------HH-HhcccCCCCcEEEE
Q 004891          375 MLKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--------NI-VGEKTSSQDRIIGA  444 (725)
Q Consensus       375 ~i~~~~~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--------~~-l~~~~~~~~r~ig~  444 (725)
                      .+..+++. +.+++||+||+|||+  ....++++++.+.++++++|++.++++.+        .+ +.+.+..+ ..+-.
T Consensus        77 ~~~~~~~~~~~~~~aD~Vilav~~--~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~~~-~~v~~  153 (354)
T 1x0v_A           77 NVVAVPDVVQAAEDADILIFVVPH--QFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLGIP-MSVLM  153 (354)
T ss_dssp             TEEEESSHHHHHTTCSEEEECCCG--GGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHTCC-EEEEE
T ss_pred             CeEEEcCHHHHHcCCCEEEEeCCH--HHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcCCC-EEEEE
Confidence            34455565 557899999999994  67788999999999999999988877653        11 12222211 11122


Q ss_pred             ecCCCCC--CCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcc
Q 004891          445 HFFSPAH--VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG  491 (725)
Q Consensus       445 h~~~p~~--~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G  491 (725)
                      .|..+..  .+....++.+ ..+++..+.+.+++...|..+.+..|..+
T Consensus       154 gp~~a~~v~~g~~~~~~~~-~~~~~~~~~v~~ll~~~g~~~~~~~di~~  201 (354)
T 1x0v_A          154 GANIASEVADEKFCETTIG-CKDPAQGQLLKELMQTPNFRITVVQEVDT  201 (354)
T ss_dssp             CSCCHHHHHTTCCEEEEEE-CSSHHHHHHHHHHHCBTTEEEEEESCHHH
T ss_pred             CCCcHHHHHhcCCceEEEE-ECCHHHHHHHHHHhCCCCEEEEEcCCchH
Confidence            2221111  0111112222 23688899999999999988777776544

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=99.10  E-value=1.6e-10  Score=124.89  Aligned_cols=154  Identities=11%  Similarity=0.063  Sum_probs=109.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHC------CCcEEEEeCChH-HHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILN------NIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  380 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~------G~~V~~~d~~~e-~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~  380 (725)
                      ++||+|||+|.||.++|..|.++      |++|++.+++.+ ..+.+.           +.|....         -....
T Consensus        54 iKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~-----------e~G~~v~---------d~ta~  113 (525)
T 3fr7_A           54 IKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEAR-----------AAGFTEE---------SGTLG  113 (525)
T ss_dssp             CSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHH-----------HTTCCTT---------TTCEE
T ss_pred             CCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHH-----------HCCCEEe---------cCCCC
Confidence            37999999999999999999999      999987776533 323221           2221100         00012


Q ss_pred             Cc-ccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhc---ccCCCCcEEEEecCCCCCC----
Q 004891          381 DY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGE---KTSSQDRIIGAHFFSPAHV----  452 (725)
Q Consensus       381 ~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~---~~~~~~r~ig~h~~~p~~~----  452 (725)
                      +. +++++||+||.++|.  ....+++.++.+.++++++| +..+++.+..+.+   .......++.+||..|.+.    
T Consensus       114 s~aEAa~~ADVVILaVP~--~~~~eVl~eI~p~LK~GaIL-s~AaGf~I~~le~~~i~~p~dv~VVrVmPNtPg~~VR~~  190 (525)
T 3fr7_A          114 DIWETVSGSDLVLLLISD--AAQADNYEKIFSHMKPNSIL-GLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRL  190 (525)
T ss_dssp             EHHHHHHHCSEEEECSCH--HHHHHHHHHHHHHSCTTCEE-EESSSHHHHHHHHTTCCCCTTSEEEEEEESSCHHHHHHH
T ss_pred             CHHHHHhcCCEEEECCCh--HHHHHHHHHHHHhcCCCCeE-EEeCCCCHHHHhhhcccCCCCCcEEEEecCCCchhHHHH
Confidence            33 678899999999994  44457888999999999986 6778888876664   3333457999999998875    


Q ss_pred             ---C-----Ceee--EecCCCCCHHHHHHHHHHHHHcCCeeE
Q 004891          453 ---M-----PLLE--IVRTERTSAQVILDLMTVGKIIKKVPV  484 (725)
Q Consensus       453 ---~-----~lve--ii~~~~t~~e~~~~~~~l~~~lGk~~v  484 (725)
                         +     ..+.  +..+...+.+..+.+..++..+|...+
T Consensus       191 y~~G~~~~g~Gv~~liAv~qd~tgea~e~alala~aiG~~~v  232 (525)
T 3fr7_A          191 YVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFT  232 (525)
T ss_dssp             HHHHTTSTTCSCCEEEEEEECSSSCHHHHHHHHHHHTTCSEE
T ss_pred             HhcccccccCCccEEEEcCCCCCHHHHHHHHHHHHHCCCCee
Confidence               1     1222  333445677889999999999999754

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=99.09  E-value=6.8e-11  Score=123.25  Aligned_cols=168  Identities=10%  Similarity=-0.041  Sum_probs=108.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  388 (725)
                      +||+|||+|.||+.+|..|+++|++|++||++++.++..           ...+....    .....+. .++.+.++++
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l-----------~~~~~~~~----~~~~~~~-~~~~~~~~~~   64 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSV-----------NLVETDGS----IFNESLT-ANDPDFLATS   64 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEE-----------EEECTTSC----EEEEEEE-ESCHHHHHTC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeE-----------EEEcCCCc----eeeeeee-ecCccccCCC
Confidence            379999999999999999999999999999998653321           11110000    0000111 2334567889


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH-HHhcccCCCCcEE-EEecC-----CCCCCC---C-eee
Q 004891          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRII-GAHFF-----SPAHVM---P-LLE  457 (725)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~-~l~~~~~~~~r~i-g~h~~-----~p~~~~---~-lve  457 (725)
                      |+||.|+|..  ...++++++.+.++++++|++.++++... .+.+.+.  . ++ |.+++     .| ...   . .+.
T Consensus        65 d~vi~~v~~~--~~~~v~~~l~~~l~~~~~vv~~~~g~~~~~~l~~~~~--~-~~~g~~~~~~~~~~p-~~~~~~~g~~~  138 (291)
T 1ks9_A           65 DLLLVTLKAW--QVSDAVKSLASTLPVTTPILLIHNGMGTIEELQNIQQ--P-LLMGTTTHAARRDGN-VIIHVANGITH  138 (291)
T ss_dssp             SEEEECSCGG--GHHHHHHHHHTTSCTTSCEEEECSSSCTTGGGTTCCS--C-EEEEEECCEEEEETT-EEEEEECCCEE
T ss_pred             CEEEEEecHH--hHHHHHHHHHhhCCCCCEEEEecCCCCcHHHHHHhcC--C-eEEEEEeEccEEcCC-EEEEecccceE
Confidence            9999999954  35788899999999899888877776553 3444332  2 44 44432     23 100   0 111


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcchhhhhhhH
Q 004891          458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFF  499 (725)
Q Consensus       458 ii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~  499 (725)
                      +.... .+++.++.+.++++.+|..+++.++..+...+.+..
T Consensus       139 i~~~~-~~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~  179 (291)
T 1ks9_A          139 IGPAR-QQDGDYSYLADILQTVLPDVAWHNNIRAELWRKLAV  179 (291)
T ss_dssp             EEESS-GGGTTCTHHHHHHHTTSSCEEECTTHHHHHHHHHHH
T ss_pred             EccCC-CCcchHHHHHHHHHhcCCCCeecHHHHHHHHHHHee
Confidence            22212 245677889999999999888888866666665543

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=99.08  E-value=1e-10  Score=124.02  Aligned_cols=123  Identities=20%  Similarity=0.256  Sum_probs=88.9

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcc-cc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EF  385 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l  385 (725)
                      .+||+|||+|.||.++|..|+..|+ +|++||++++.++.....+.+.+...   +         ...+++.+++++ ++
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~---~---------~~~~i~~t~d~~ea~   76 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVV---D---------TNVSVRAEYSYEAAL   76 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHT---T---------CCCCEEEECSHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhcc---C---------CCCEEEEeCCHHHHh
Confidence            4689999999999999999999998 99999999998887544444433211   1         123577778885 89


Q ss_pred             cCCCEEEEec--cCCh-----------------HHHHHHHHHHHHhCCCCeEE--EecCCCCChHHHhc-ccC-CCCcEE
Q 004891          386 KDVDMVIEAV--IESV-----------------PLKQKIFSELEKACPPHCIL--ATNTSTIDLNIVGE-KTS-SQDRII  442 (725)
Q Consensus       386 ~~aDlVIeav--pe~~-----------------~~k~~v~~~l~~~~~~~~ii--~s~tS~~~~~~l~~-~~~-~~~r~i  442 (725)
                      ++||+||+++  |++.                 .+++++++++.+++ |++++  +||++.+. +.+.. ... .+.|++
T Consensus        77 ~~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP~~~~-t~~~~~~~~~~~~rvi  154 (331)
T 1pzg_A           77 TGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPLDCM-VKVMCEASGVPTNMIC  154 (331)
T ss_dssp             TTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHH-HHHHHHHHCCCGGGEE
T ss_pred             CCCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCchHHH-HHHHHHhcCCChhcEE
Confidence            9999999999  7543                 35889999999998 66665  35554443 33332 222 456777


Q ss_pred             EE
Q 004891          443 GA  444 (725)
Q Consensus       443 g~  444 (725)
                      |+
T Consensus       155 G~  156 (331)
T 1pzg_A          155 GM  156 (331)
T ss_dssp             EC
T ss_pred             ec
Confidence            75

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=99.05  E-value=8.4e-10  Score=117.65  Aligned_cols=159  Identities=13%  Similarity=0.028  Sum_probs=93.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  388 (725)
                      +||+|||+|.||+.+|..|+++|++|++||+++++++...+.-   +.. ...+. .       + .+..+++.+.++++
T Consensus        15 ~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g---~~~-~~~~~-~-------~-~~~~~~~~~~~~~a   81 (335)
T 1z82_A           15 MRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSH---TSP-YVEES-K-------I-TVRATNDLEEIKKE   81 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHS---CBT-TBTTC-C-------C-CSEEESCGGGCCTT
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhC---Ccc-cCCCC-e-------e-eEEEeCCHHHhcCC
Confidence            5899999999999999999999999999999998876543210   000 00000 0       0 24445565338899


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHH---HhcccC--CCC-cEEEEecCCCCC--CCCeeeEec
Q 004891          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI---VGEKTS--SQD-RIIGAHFFSPAH--VMPLLEIVR  460 (725)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~---l~~~~~--~~~-r~ig~h~~~p~~--~~~lveii~  460 (725)
                      |+||.|||  .....+++.++.+   ++++|++.+.++....   +++.+.  .+. ..+...|..+..  .+....++.
T Consensus        82 DvVil~vk--~~~~~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~  156 (335)
T 1z82_A           82 DILVIAIP--VQYIREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILGCPYAVLSGPSHAEEVAKKLPTAVTL  156 (335)
T ss_dssp             EEEEECSC--GGGHHHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTCCCEEEEESSCCHHHHHTTCCEEEEE
T ss_pred             CEEEEECC--HHHHHHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcCCceEEEECCccHHHHhCCCceEEEE
Confidence            99999999  3555566655543   6777777665554421   221111  011 111222221111  111112222


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEEEcCC
Q 004891          461 TERTSAQVILDLMTVGKIIKKVPVVVGNC  489 (725)
Q Consensus       461 ~~~t~~e~~~~~~~l~~~lGk~~v~v~d~  489 (725)
                      +.. +   .+.+.+++...|..+.+..|.
T Consensus       157 g~~-~---~~~~~~ll~~~g~~~~~~~di  181 (335)
T 1z82_A          157 AGE-N---SKELQKRISTEYFRVYTCEDV  181 (335)
T ss_dssp             EET-T---HHHHHHHHCCSSEEEEEESCH
T ss_pred             Eeh-h---HHHHHHHhCCCCEEEEecCch
Confidence            221 2   678899999988887776664

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=99.03  E-value=4e-10  Score=122.09  Aligned_cols=170  Identities=11%  Similarity=-0.017  Sum_probs=107.7

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCC-------CcEEEEeCChH-----HHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcC
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNN-------IYVVLKEVNSE-----YLLKGIKTIEANVRGLVTRGKLTQDKANNALKM  375 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G-------~~V~~~d~~~e-----~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~  375 (725)
                      ++||+|||+|.||++||..|+++|       ++|++||++++     .++...+.       ......+..   ......
T Consensus        21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~-------~~~~~~~~~---~~~~~~   90 (375)
T 1yj8_A           21 PLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNK-------HENTKYLKG---VPLPHN   90 (375)
T ss_dssp             CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHH-------CBCTTTSTT---CBCCTT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhc-------CcccccCCc---ccCcCC
Confidence            468999999999999999999999       99999999987     54443210       000000000   000123


Q ss_pred             cccccCc-ccccCCCEEEEeccCChHHHHHHHHHHHH----hCCCCeEEEecCCCCChH-----HH----hcccCCCCcE
Q 004891          376 LKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEK----ACPPHCILATNTSTIDLN-----IV----GEKTSSQDRI  441 (725)
Q Consensus       376 i~~~~~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~----~~~~~~ii~s~tS~~~~~-----~l----~~~~~~~~r~  441 (725)
                      +..+++. +.+++||+||+|||  .....+++.++.+    .++++++|++.++++.+.     .+    .+....+ ..
T Consensus        91 i~~~~~~~ea~~~aDvVilav~--~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~~~-~~  167 (375)
T 1yj8_A           91 IVAHSDLASVINDADLLIFIVP--CQYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLNIP-CS  167 (375)
T ss_dssp             EEEESSTHHHHTTCSEEEECCC--HHHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSSSC-EE
T ss_pred             eEEECCHHHHHcCCCEEEEcCC--HHHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcCCC-EE
Confidence            5556666 55789999999999  5778889999988    888999999888776541     11    1212111 11


Q ss_pred             EEEecCCCCC--CCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcc
Q 004891          442 IGAHFFSPAH--VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG  491 (725)
Q Consensus       442 ig~h~~~p~~--~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G  491 (725)
                      +-..|..+..  .+....++.+. .+++..+.+++++...|..+.+..|..|
T Consensus       168 v~~gp~~a~~v~~g~~~~~~~~~-~~~~~~~~v~~ll~~~g~~~~~~~di~~  218 (375)
T 1yj8_A          168 ALSGANIAMDVAMENFSEATIGG-NDKDSLVIWQRVFDLPYFKINCVNETIE  218 (375)
T ss_dssp             EEECSCCHHHHHTTCCEEEEEEC-SCHHHHHHHHHHHCBTTEEEEEESCSHH
T ss_pred             EEeCCchHHHHHhCCCeEEEEec-CCHHHHHHHHHHhCCCCeEEEEeCCcHH
Confidence            1111211110  01111222222 3678899999999999988887777654

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=99.03  E-value=5.3e-10  Score=118.05  Aligned_cols=170  Identities=11%  Similarity=-0.013  Sum_probs=104.1

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHC-----C-CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHH-HHhhcCcccc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILN-----N-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKA-NNALKMLKGV  379 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~-----G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~-~~~~~~i~~~  379 (725)
                      ..+||+|||+|.||+.+|..|+++     | ++|++||+ ++.++...+.          .|....... ......+..+
T Consensus         7 ~~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~----------~g~~~~~~~~~~~~~~~~~~   75 (317)
T 2qyt_A            7 QPIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAA----------GGLRVVTPSRDFLARPTCVT   75 (317)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHH----------TSEEEECSSCEEEECCSEEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhc----------CCeEEEeCCCCeEEecceEe
Confidence            346899999999999999999999     9 99999999 7665553210          111000000 0000012223


Q ss_pred             cCcccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH-HHhcccCCCCcEEEEecCCCCCC------
Q 004891          380 LDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRIIGAHFFSPAHV------  452 (725)
Q Consensus       380 ~~~~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~-~l~~~~~~~~r~ig~h~~~p~~~------  452 (725)
                      ++.+.+.++|+||.|||...  ..++++++.+.++++++|++.+.++... .+.+.+....-+.|+.+...+..      
T Consensus        76 ~~~~~~~~~D~vil~vk~~~--~~~v~~~i~~~l~~~~~iv~~~nG~~~~~~l~~~l~~~~v~~g~~~~~a~~~~pg~~~  153 (317)
T 2qyt_A           76 DNPAEVGTVDYILFCTKDYD--MERGVAEIRPMIGQNTKILPLLNGADIAERMRTYLPDTVVWKGCVYISARKSAPGLIT  153 (317)
T ss_dssp             SCHHHHCCEEEEEECCSSSC--HHHHHHHHGGGEEEEEEEEECSCSSSHHHHHTTTSCTTTBCEEEEEEEEEEEETTEEE
T ss_pred             cCccccCCCCEEEEecCccc--HHHHHHHHHhhcCCCCEEEEccCCCCcHHHHHHHCCCCcEEEEEEEEEEEEcCCCEEE
Confidence            44456788999999998544  4678888988888888888877777763 45555543221223322211111      


Q ss_pred             --CCeeeE-ecC--CCCCHHHHHHHHHHHHHcCCeeEEEcCCc
Q 004891          453 --MPLLEI-VRT--ERTSAQVILDLMTVGKIIKKVPVVVGNCT  490 (725)
Q Consensus       453 --~~lvei-i~~--~~t~~e~~~~~~~l~~~lGk~~v~v~d~~  490 (725)
                        .....+ +..  ...+++.+ .+.+++...|....+.++..
T Consensus       154 ~~~~g~~~~ig~~~~~~~~~~~-~~~~ll~~~g~~~~~~~di~  195 (317)
T 2qyt_A          154 LEADRELFYFGSGLPEQTDDEV-RLAELLTAAGIRAYNPTDID  195 (317)
T ss_dssp             EEEEEEEEEEECCSSSCCHHHH-HHHHHHHHTTCCEECCSCHH
T ss_pred             EcCCCceEEEcCCCCCCcCHHH-HHHHHHHHCCCCCEEchHHH
Confidence              111112 322  33457777 89999999998777666643

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=99.03  E-value=5.4e-10  Score=119.01  Aligned_cols=164  Identities=13%  Similarity=0.046  Sum_probs=104.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeC--ChHHHHHHHHHHHHHHHhhHHcCC-CCHHHHHHhhcCccccc--Cc-
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEV--NSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVL--DY-  382 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~--~~e~~~~~~~~i~~~l~~~~~~g~-~~~~~~~~~~~~i~~~~--~~-  382 (725)
                      +||+|||+|.||+++|..|+++|++|++||+  +++.++...+           .+. +...   ..+..+..++  ++ 
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~-----------~~~~~~~g---~~~~~~~~~~~~~~~   66 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISA-----------GREHPRLG---VKLNGVEIFWPEQLE   66 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHT-----------TCCBTTTT---BCCCSEEEECGGGHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHH-----------hCcCcccC---ccccceEEecHHhHH
Confidence            3799999999999999999999999999999  8887665421           121 0000   0001223344  44 


Q ss_pred             ccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC---C---hHHHhcccCC--CCcEEEEecCCCCCC--
Q 004891          383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI---D---LNIVGEKTSS--QDRIIGAHFFSPAHV--  452 (725)
Q Consensus       383 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~---~---~~~l~~~~~~--~~r~ig~h~~~p~~~--  452 (725)
                      +.+++||+||.|+|.+  ...+++.++.+ ++++++|++.+.++   +   ...+.+.+..  +..........|...  
T Consensus        67 ~~~~~~D~vi~~v~~~--~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~  143 (335)
T 1txg_A           67 KCLENAEVVLLGVSTD--GVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIARE  143 (335)
T ss_dssp             HHHTTCSEEEECSCGG--GHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHH
T ss_pred             HHHhcCCEEEEcCChH--HHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCcHHH
Confidence            4578999999999944  56788889988 88899888776565   2   2344443332  110001111223221  


Q ss_pred             ---CCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCc
Q 004891          453 ---MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCT  490 (725)
Q Consensus       453 ---~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~  490 (725)
                         .....++.+. .+++..+.+.++++..|..+.+..+..
T Consensus       144 ~~~g~~~~~~~~~-~~~~~~~~~~~ll~~~g~~~~~~~di~  183 (335)
T 1txg_A          144 VAKRMPTTVVFSS-PSESSANKMKEIFETEYFGVEVTTDII  183 (335)
T ss_dssp             HHTTCCEEEEEEC-SCHHHHHHHHHHHCBTTEEEEEESCHH
T ss_pred             HHccCCcEEEEEe-CCHHHHHHHHHHhCCCcEEEEecCchH
Confidence               1111233333 268889999999999998877777643

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=98.98  E-value=3.2e-09  Score=112.22  Aligned_cols=174  Identities=14%  Similarity=0.097  Sum_probs=113.8

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      .++||+|||+|.||+.+|..|+++|++|++| ++++.++...+.   .+  .......      .....+..+++.+.++
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~---g~--~~~~~~~------~~~~~~~~~~~~~~~~   85 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEAT---GL--RLETQSF------DEQVKVSASSDPSAVQ   85 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHH---CE--EEECSSC------EEEECCEEESCGGGGT
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhC---Ce--EEEcCCC------cEEEeeeeeCCHHHcC
Confidence            3579999999999999999999999999999 998887665321   00  0000000      0112344556666778


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH-HHhcccCCCCcEEEEe------cCCCCCCC---Cee
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRIIGAH------FFSPAHVM---PLL  456 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~-~l~~~~~~~~r~ig~h------~~~p~~~~---~lv  456 (725)
                      ++|+||.|||..  ...++++++.+.++++++|++.++++... .+.+.+.  .++++..      ...|-...   .. 
T Consensus        86 ~~D~vilavk~~--~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~l~~~~~--~~vl~g~~~~~a~~~gP~~~~~~~~g-  160 (318)
T 3hwr_A           86 GADLVLFCVKST--DTQSAALAMKPALAKSALVLSLQNGVENADTLRSLLE--QEVAAAVVYVATEMAGPGHVRHHGRG-  160 (318)
T ss_dssp             TCSEEEECCCGG--GHHHHHHHHTTTSCTTCEEEEECSSSSHHHHHHHHCC--SEEEEEEEEEEEEEEETTEEEEEEEE-
T ss_pred             CCCEEEEEcccc--cHHHHHHHHHHhcCCCCEEEEeCCCCCcHHHHHHHcC--CcEEEEEEEEeEEEcCCeEEEEcCCc-
Confidence            999999999944  56788999999999999999999999874 4555554  4444321      11222111   11 


Q ss_pred             eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcchhhhhhhHH
Q 004891          457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFP  500 (725)
Q Consensus       457 eii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a  500 (725)
                      .+.-|.   .+..+.+.+++...|....+..|..+.....++..
T Consensus       161 ~~~ig~---~~~~~~l~~~l~~~~~~~~~~~Di~~~~w~Kl~~N  201 (318)
T 3hwr_A          161 ELVIEP---TSHGANLAAIFAAAGVPVETSDNVRGALWAKLILN  201 (318)
T ss_dssp             EEEECC---CTTTHHHHHHHHHTTCCEEECSCHHHHHHHHHHHH
T ss_pred             eEEEcC---CHHHHHHHHHHHhCCCCcEechHHHHHHHHHHHHH
Confidence            111222   23456788888888887777778776666655443

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=98.96  E-value=6e-10  Score=116.37  Aligned_cols=122  Identities=21%  Similarity=0.263  Sum_probs=82.3

Q ss_pred             CCCCcceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccC
Q 004891          304 KPRGVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (725)
Q Consensus       304 ~~~~~~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (725)
                      +.++++||+|||+|.||.++|..++..|+  +|+++|++++....+.+.. +     .            ...+++.+++
T Consensus        10 ~~~~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~-~-----~------------~~~~i~~t~d   71 (303)
T 2i6t_A           10 ENKTVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLE-I-----F------------NLPNVEISKD   71 (303)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHH-H-----H------------TCTTEEEESC
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHh-h-----h------------cCCCeEEeCC
Confidence            34567899999999999999999999999  9999999987322332211 0     0            0125666778


Q ss_pred             cccccCCCEEEEec-------------cCChHHHHHHHHHHHHhCCCCeEE--EecCCCCChHHHhcccC-CCCcEEEE
Q 004891          382 YSEFKDVDMVIEAV-------------IESVPLKQKIFSELEKACPPHCIL--ATNTSTIDLNIVGEKTS-SQDRIIGA  444 (725)
Q Consensus       382 ~~~l~~aDlVIeav-------------pe~~~~k~~v~~~l~~~~~~~~ii--~s~tS~~~~~~l~~~~~-~~~r~ig~  444 (725)
                      ++++++||+||+++             .++..+++++++++.+++ |++++  +||.+......+..... .+.|++|+
T Consensus        72 ~~~l~~aD~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sNP~~~~t~~~~~~~~~p~~rviG~  149 (303)
T 2i6t_A           72 LSASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQPVEIMTYVTWKLSTFPANRVIGI  149 (303)
T ss_dssp             GGGGTTCSEEEECCCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             HHHHCCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCChHHHHHHHHHHhcCCCHHHeeCC
Confidence            89999999999997             889999999999999998 66665  45533322112222222 25677775

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=98.94  E-value=3.7e-09  Score=104.20  Aligned_cols=141  Identities=18%  Similarity=0.198  Sum_probs=98.4

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEE--cCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEE
Q 004891           27 ALAIPIVAGLKDKFEEATSRDDVKAIVLT--GNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (725)
Q Consensus        27 al~~~~~~~l~~~l~~~~~~~~v~~vVl~--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (725)
                      .++..+.+.+.+.|..++.++.++.|+|.  +.|+      ++.                ....++ +.|..+++||++.
T Consensus        35 ~I~~~~a~~i~~~L~~~~~~~~~k~I~l~InSPGG------~v~----------------a~~~I~-~~i~~~~~pV~~~   91 (208)
T 2cby_A           35 EVNDEIANRLCAQILLLAAEDASKDISLYINSPGG------SIS----------------AGMAIY-DTMVLAPCDIATY   91 (208)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCB------CHH----------------HHHHHH-HHHHHCSSCEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhCCCCCCEEEEEECCCC------CHH----------------HHHHHH-HHHHhcCCCEEEE
Confidence            47889999999999999877777777663  3332      211                122445 6688899999999


Q ss_pred             EcccccchhhHHhhhcCE--EEeeCCceEeCcccccCCCCCchhh------------------chHhhhhC--HHHHHHH
Q 004891          105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGT------------------QRLPRLVG--LSKAIEM  162 (725)
Q Consensus       105 v~G~a~GgG~~lalacD~--~ia~~~a~~~~pe~~~Gl~p~~g~~------------------~~l~r~vG--~~~a~~l  162 (725)
                      +.|.|.++|..++++||.  |++.+.+.++.....-|.   .|-.                  ..+.+..|  .....++
T Consensus        92 v~g~AaS~g~~Ia~agd~~~~~a~p~a~igih~p~~~~---~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~  168 (208)
T 2cby_A           92 AMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGV---TGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEAD  168 (208)
T ss_dssp             EEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC-------------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             ECcEeHHHHHHHHhCCCcCCEEEcCCcEEEEecccccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence            999999999999999999  999999999987654221   1110                  11233333  3446678


Q ss_pred             HHcCCCCCHHHHHHcCCcceecC-cchHHHHH
Q 004891          163 MLLSKSITSEEGWKLGLIDAVVT-SEELLKVS  193 (725)
Q Consensus       163 ~l~g~~~~a~eA~~~Glv~~vv~-~~~l~~~a  193 (725)
                      +..|..++++||++.||||++.+ .+++++..
T Consensus       169 ~~~~~~~ta~eA~e~GLvD~i~~~~~~ll~~~  200 (208)
T 2cby_A          169 SDRDRWFTAAEALEYGFVDHIITRAHVNGEAQ  200 (208)
T ss_dssp             HHTTCEEEHHHHHHHTSCSEECSCC-------
T ss_pred             HhCCcEEcHHHHHHcCCCcEecCchHHHHHHH
Confidence            88999999999999999999984 44555443

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=98.46  E-value=1.1e-10  Score=114.80  Aligned_cols=148  Identities=14%  Similarity=0.163  Sum_probs=97.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  388 (725)
                      +||+|||+|.||..+|..|.+.|++|++||++++ .+...           ..+             +...+..+.++++
T Consensus        20 ~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~-----------~~g-------------~~~~~~~~~~~~a   74 (201)
T 2yjz_A           20 GVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLL-----------PRG-------------AEVLCYSEAASRS   74 (201)
Confidence            5799999999999999999999999999999876 32211           111             1122222567899


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh--------HHHhcccCCCCcEEEEecCCCCCCCC-ee---
Q 004891          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--------NIVGEKTSSQDRIIGAHFFSPAHVMP-LL---  456 (725)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--------~~l~~~~~~~~r~ig~h~~~p~~~~~-lv---  456 (725)
                      |+||.|+|..  ....++ ++.. ..++++|++.+++++.        ..+.+.+.. .+++...++.|..... ..   
T Consensus        75 DvVilav~~~--~~~~v~-~l~~-~~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~-~~vvra~~n~~a~~~~~g~l~g  149 (201)
T 2yjz_A           75 DVIVLAVHRE--HYDFLA-ELAD-SLKGRVLIDVSNNQKMNQYPESNAEYLAQLVPG-AHVVKAFNTISAWALQSGTLDA  149 (201)
Confidence            9999999953  334454 4543 3467888877777653        333333322 3455544444443332 11   


Q ss_pred             ---eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004891          457 ---EIVRTERTSAQVILDLMTVGKIIKKVPVVVGN  488 (725)
Q Consensus       457 ---eii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  488 (725)
                         .++.|.  +++..+.+.++++.+|+.++.+++
T Consensus       150 ~~~~~~~g~--~~~~~~~v~~ll~~~G~~~~~~G~  182 (201)
T 2yjz_A          150 SRQVFVCGN--DSKAKDRVMDIARTLGLTPLDQGS  182 (201)
Confidence               234443  578899999999999999998876

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=98.92  E-value=2.2e-09  Score=113.34  Aligned_cols=150  Identities=18%  Similarity=0.217  Sum_probs=99.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      +||+|||+|.||.++|..|++.|+  +|+++|+++++++.....+.+.+. ..  .          ..++.. ++.++++
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~-~~--~----------~~~i~~-~d~~~~~   66 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTP-FT--R----------RANIYA-GDYADLK   66 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG-GS--C----------CCEEEE-CCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhh-hc--C----------CcEEEe-CCHHHhC
Confidence            489999999999999999999999  999999999887764433322211 00  0          112333 3567889


Q ss_pred             CCCEEEEeccCC--------------hHHHHHHHHHHHHhCCCCeEEE--ecCCCCChHHHhcc-cC-CCCcEEEEecCC
Q 004891          387 DVDMVIEAVIES--------------VPLKQKIFSELEKACPPHCILA--TNTSTIDLNIVGEK-TS-SQDRIIGAHFFS  448 (725)
Q Consensus       387 ~aDlVIeavpe~--------------~~~k~~v~~~l~~~~~~~~ii~--s~tS~~~~~~l~~~-~~-~~~r~ig~h~~~  448 (725)
                      +||+||+|++..              ..+++++++++.+++ ++++++  ||.+... +.+... .. .+.|++|+    
T Consensus        67 ~aDvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~~~~-~~~~~~~~~~~~~rviG~----  140 (319)
T 1a5z_A           67 GSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPVDVL-TYFFLKESGMDPRKVFGS----  140 (319)
T ss_dssp             TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHH-HHHHHHHHTCCTTTEEEC----
T ss_pred             CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCcHHHH-HHHHHHHhCCChhhEEee----
Confidence            999999999852              246788889999986 565543  3433321 233322 22 45677775    


Q ss_pred             CCCCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcchhhh
Q 004891          449 PAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVN  495 (725)
Q Consensus       449 p~~~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~n  495 (725)
                                    .|..+.......+.+.+|..+   ++..+++.+
T Consensus       141 --------------~t~ld~~r~~~~la~~lgv~~---~~v~~~v~G  170 (319)
T 1a5z_A          141 --------------GTVLDTARLRTLIAQHCGFSP---RSVHVYVIG  170 (319)
T ss_dssp             --------------TTHHHHHHHHHHHHHHHTCCG---GGEECCEEB
T ss_pred             --------------CccHHHHHHHHHHHHHhCcCH---HHceEEEEe
Confidence                          355666777777778888543   444455554

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=98.90  E-value=6.1e-09  Score=110.94  Aligned_cols=169  Identities=11%  Similarity=0.144  Sum_probs=104.8

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      ++||+|||+|.||+.+|..|+++|++|++|+++ +.++...           +.|......-......+..+++.+.+.+
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~   70 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQ-----------TAGLRLTEDGATHTLPVRATHDAAALGE   70 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHH-----------HTCEEEEETTEEEEECCEEESCHHHHCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHH-----------HCCCEEecCCCeEEEeeeEECCHHHcCC
Confidence            578999999999999999999999999999995 4444322           1121000000000012334456656789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC-------------------hH-HHhcccCCCCcEEE-Eec
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID-------------------LN-IVGEKTSSQDRIIG-AHF  446 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~-------------------~~-~l~~~~~~~~r~ig-~h~  446 (725)
                      +|+||.|||  .....++++++.+.++++++|++...+++                   .. .+.+.++ ..++++ +-+
T Consensus        71 ~D~Vilavk--~~~~~~~~~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~-~~~v~~gv~~  147 (335)
T 3ghy_A           71 QDVVIVAVK--APALESVAAGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIP-TRHVLGCVVH  147 (335)
T ss_dssp             CSEEEECCC--HHHHHHHHGGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSC-GGGEEEEEEC
T ss_pred             CCEEEEeCC--chhHHHHHHHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcC-cccEEEEEEE
Confidence            999999998  45566888889888999999988877753                   11 3333332 234433 222


Q ss_pred             C-----CCCCC---CCeeeEecC--CCCCHHHHHHHHHHHHHcCCeeEEEcCCcch
Q 004891          447 F-----SPAHV---MPLLEIVRT--ERTSAQVILDLMTVGKIIKKVPVVVGNCTGF  492 (725)
Q Consensus       447 ~-----~p~~~---~~lveii~~--~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gf  492 (725)
                      +     .|-..   ... .++-|  ...+.+..+.+.+++...|....+..|..+.
T Consensus       148 ~~a~~~~pg~v~~~~~g-~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~  202 (335)
T 3ghy_A          148 LTCATVSPGHIRHGNGR-RLILGEPAGGASPRLASIAALFGRAGLQAECSEAIQRD  202 (335)
T ss_dssp             CCEEESSTTEEEECSCC-EEEEECTTCSCCHHHHHHHHHHHHTTCEEEECSCHHHH
T ss_pred             EEEEEcCCcEEEECCCC-eEEEecCCCCcCHHHHHHHHHHHhCCCCcEeCchHHHH
Confidence            1     12111   000 12222  2234577788899999988777776776653

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=98.87  E-value=2.9e-09  Score=111.93  Aligned_cols=99  Identities=14%  Similarity=0.243  Sum_probs=74.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      +||+|||+|.||.++|..++..|+ +|+++|+++++++.....+.+...            ......+++.+++++++++
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~------------~~~~~~~i~~t~d~~a~~~   70 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASP------------IEGFDVRVTGTNNYADTAN   70 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHH------------HHTCCCCEEEESCGGGGTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHh------------hcCCCeEEEECCCHHHHCC
Confidence            689999999999999999999997 999999999877643222211110            0111235666678889999


Q ss_pred             CCEEEEec--------------cCChHHHHHHHHHHHHhCCCCeEEE
Q 004891          388 VDMVIEAV--------------IESVPLKQKIFSELEKACPPHCILA  420 (725)
Q Consensus       388 aDlVIeav--------------pe~~~~k~~v~~~l~~~~~~~~ii~  420 (725)
                      ||+||+++              .++..+++++++++.+++ |+++++
T Consensus        71 aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi  116 (309)
T 1ur5_A           71 SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVII  116 (309)
T ss_dssp             CSEEEECCCC--------CHHHHHHHHHHHHHHHHHGGGC-TTCEEE
T ss_pred             CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEE
Confidence            99999997              344578888999999987 677654

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=98.86  E-value=2.4e-08  Score=105.19  Aligned_cols=175  Identities=11%  Similarity=0.032  Sum_probs=109.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCC-CHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL-TQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      +||+|||+|.||+.+|..|+++|++|++|++++  .+...           +.|.. ....-...+..+..+++.+.+.+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~-----------~~g~~~~~~~g~~~~~~~~~~~~~~~~~~   69 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAIA-----------GNGLKVFSINGDFTLPHVKGYRAPEEIGP   69 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHHH-----------HTCEEEEETTCCEEESCCCEESCHHHHCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHHH-----------hCCCEEEcCCCeEEEeeceeecCHHHcCC
Confidence            589999999999999999999999999999986  23221           11210 00000000002333455566789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh-HHHhcccCCCCcEEEEe------cCCCCC---CCCe-e
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRIIGAH------FFSPAH---VMPL-L  456 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~~~~~r~ig~h------~~~p~~---~~~l-v  456 (725)
                      +|+||.|||  .....++++++.+.+.++++|++...++.. +.+.+.+.. .++++.-      ...|-.   ..+. +
T Consensus        70 ~D~vilavk--~~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l~~~~~~-~~v~~~~~~~~a~~~~p~~v~~~~~g~~  146 (312)
T 3hn2_A           70 MDLVLVGLK--TFANSRYEELIRPLVEEGTQILTLQNGLGNEEALATLFGA-ERIIGGVAFLCSNRGEPGEVHHLGAGRI  146 (312)
T ss_dssp             CSEEEECCC--GGGGGGHHHHHGGGCCTTCEEEECCSSSSHHHHHHHHTCG-GGEEEEEEEEECCBCSSSEEEECEEEEE
T ss_pred             CCEEEEecC--CCCcHHHHHHHHhhcCCCCEEEEecCCCCcHHHHHHHCCC-CcEEEEEEEeeeEEcCCcEEEECCCCeE
Confidence            999999998  555568899999999999999998899874 445554432 2443322      111211   1111 1


Q ss_pred             eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcchhhhhhhH
Q 004891          457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFF  499 (725)
Q Consensus       457 eii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~  499 (725)
                      .+-..+..+.+..+.+.+++...|....+..|..+.....++.
T Consensus       147 ~ig~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~  189 (312)
T 3hn2_A          147 ILGEFLPRDTGRIEELAAMFRQAGVDCRTTDDLKRARWEKLVW  189 (312)
T ss_dssp             EEEESSCCCSHHHHHHHHHHHHTTCCEEECSCHHHHHHHHHHH
T ss_pred             EEecCCCCccHHHHHHHHHHHhCCCCcEEChHHHHHHHHHHHH
Confidence            1222233346778889999999887776667765555555443

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=98.77  E-value=6.7e-09  Score=108.89  Aligned_cols=120  Identities=20%  Similarity=0.295  Sum_probs=79.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      +||+|||+|.||.++|..++..|+  +|+++|+++++++.....+        .... .   .. ...+++. +++++++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l--------~~~~-~---~~-~~~~i~~-~~~~a~~   66 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDI--------AHAA-P---VS-HGTRVWH-GGHSELA   66 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHH--------TTSC-C---TT-SCCEEEE-ECGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhh--------hhhh-h---hc-CCeEEEE-CCHHHhC
Confidence            489999999999999999999999  9999999988765321111        1110 0   00 0012332 4668899


Q ss_pred             CCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCeEEE--ecCCCCChHHHhcccCCCCcEEEE
Q 004891          387 DVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILA--TNTSTIDLNIVGEKTSSQDRIIGA  444 (725)
Q Consensus       387 ~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~--s~tS~~~~~~l~~~~~~~~r~ig~  444 (725)
                      +||+||+++  |.            +..+++++++++.+++ |+++++  ||.+......+.+.. .++|++|+
T Consensus        67 ~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~~~vi~~tNP~~~~~~~~~~~~-~~~rviG~  138 (304)
T 2v6b_A           67 DAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAA-PDAVLLVTSNPVDLLTDLATQLA-PGQPVIGS  138 (304)
T ss_dssp             TCSEEEECC------------CHHHHHHHHHHHHHHHHHHC-SSSEEEECSSSHHHHHHHHHHHS-CSSCEEEC
T ss_pred             CCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhC-CCeEEEEecCchHHHHHHHHHhC-ChhcEEeC
Confidence            999999999  32            4557789999999986 666554  444433322333333 56677764

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=98.73  E-value=5.5e-09  Score=111.49  Aligned_cols=117  Identities=15%  Similarity=0.028  Sum_probs=82.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHH-HCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          309 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~-~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      ++|+|||+|.||.++|..+. ..|++|++||++++..+...+           .|             +...+++ +.++
T Consensus       164 ~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~~~l~ell~  219 (348)
T 2w2k_A          164 HVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKA-----------LG-------------AERVDSLEELAR  219 (348)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHH-----------HT-------------CEECSSHHHHHH
T ss_pred             CEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhh-----------cC-------------cEEeCCHHHHhc
Confidence            58999999999999999999 999999999998765443210           01             2223344 4578


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhcccCCC-CcEEEEecCCC
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQ-DRIIGAHFFSP  449 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~~-~r~ig~h~~~p  449 (725)
                      +||+|++++|...+.+..+.+++.+.++++++|++.+++  .....+.+.+... -...++++|.+
T Consensus       220 ~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~  285 (348)
T 2w2k_A          220 RSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEF  285 (348)
T ss_dssp             HCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTT
T ss_pred             cCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCC
Confidence            999999999987766554445666788999988754444  3334566655432 12367888874

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=98.73  E-value=4.7e-08  Score=103.37  Aligned_cols=172  Identities=14%  Similarity=0.095  Sum_probs=106.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHH---cCCCCHHHHHHhhcCcccccCcccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT---RGKLTQDKANNALKMLKGVLDYSEF  385 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~---~g~~~~~~~~~~~~~i~~~~~~~~l  385 (725)
                      +||+|||+|.||+.+|..|+++|++|++|++++.  +...+.   .+  .+.   .|..       .+..+..+++.+.+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~--~~i~~~---Gl--~~~~~~~g~~-------~~~~~~~~~~~~~~   68 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDY--ETVKAK---GI--RIRSATLGDY-------TFRPAAVVRSAAEL   68 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTH--HHHHHH---CE--EEEETTTCCE-------EECCSCEESCGGGC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChH--HHHHhC---Cc--EEeecCCCcE-------EEeeeeeECCHHHc
Confidence            5899999999999999999999999999999862  322110   00  000   0100       00123344566555


Q ss_pred             -cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh-HHHhcccCCCCcEEEE-ecC-----CCCCC---CC
Q 004891          386 -KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRIIGA-HFF-----SPAHV---MP  454 (725)
Q Consensus       386 -~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~~~~~r~ig~-h~~-----~p~~~---~~  454 (725)
                       +++|+||.|||..  ...++++++.+.++++++|++...++.. ..+.+.+... ++++. -++     .|-.+   .+
T Consensus        69 ~~~~DlVilavK~~--~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~~~~~~~-~vl~g~~~~~a~~~~pg~v~~~~~  145 (320)
T 3i83_A           69 ETKPDCTLLCIKVV--EGADRVGLLRDAVAPDTGIVLISNGIDIEPEVAAAFPDN-EVISGLAFIGVTRTAPGEIWHQAY  145 (320)
T ss_dssp             SSCCSEEEECCCCC--TTCCHHHHHTTSCCTTCEEEEECSSSSCSHHHHHHSTTS-CEEEEEEEEEEEEEETTEEEEEEE
T ss_pred             CCCCCEEEEecCCC--ChHHHHHHHHhhcCCCCEEEEeCCCCChHHHHHHHCCCC-cEEEEEEEeceEEcCCCEEEECCC
Confidence             4899999999843  3447888899999999988888888864 4555555433 44332 221     22111   11


Q ss_pred             e-eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCcchhhhhh
Q 004891          455 L-LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRA  497 (725)
Q Consensus       455 l-veii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl  497 (725)
                      . +.+-..+..+.+..+.+.+++...|-...+..|..+.....+
T Consensus       146 ~~~~ig~~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl  189 (320)
T 3i83_A          146 GRLMLGNYPGGVSERVKTLAAAFEEAGIDGIATENITTARWQKC  189 (320)
T ss_dssp             EEEEEEESSSCCCHHHHHHHHHHHHTTSCEEECSCHHHHHHHHH
T ss_pred             CEEEEecCCCCccHHHHHHHHHHHhCCCCceECHHHHHHHHHHH
Confidence            1 112111233456788899999998877777677655444444

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=98.71  E-value=2.1e-08  Score=105.10  Aligned_cols=120  Identities=13%  Similarity=0.214  Sum_probs=81.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891          310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  388 (725)
                      ||+|||+|.||.++|..++..|+ +|+++|+++++++.....+.+.... .  +         ...+++.+++++++++|
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~-~--~---------~~~~i~~t~d~~a~~~a   68 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAE-L--G---------VDIRISGSNSYEDMRGS   68 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHH-H--T---------CCCCEEEESCGGGGTTC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhh-c--C---------CCeEEEECCCHHHhCCC
Confidence            79999999999999999999898 7999999998876432222211100 0  0         01246666778899999


Q ss_pred             CEEEEec--------------cCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccC-----CCCcEEEE
Q 004891          389 DMVIEAV--------------IESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS-----SQDRIIGA  444 (725)
Q Consensus       389 DlVIeav--------------pe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~-----~~~r~ig~  444 (725)
                      |+||++.              ..+..+++++.+++.+++ |+++++..  +.|+..+...+.     .+.|++|+
T Consensus        69 D~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~--tNPv~~~t~~~~k~~~~p~~rviG~  140 (308)
T 2d4a_B           69 DIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYA-KDAIVVIT--TNPVDAMTYVMYKKTGFPRERVIGF  140 (308)
T ss_dssp             SEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEC--CSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe--CCchHHHHHHHHHhcCCChhhEEEe
Confidence            9999994              455677889999999987 66644432  235554443321     24466664

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=98.71  E-value=5.5e-09  Score=110.79  Aligned_cols=117  Identities=12%  Similarity=0.050  Sum_probs=81.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||+|.||..+|..+...|++|++||++++..+...           +.|             +... ++ +.+++
T Consensus       156 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~-~l~e~l~~  210 (330)
T 2gcg_A          156 STVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAA-----------EFQ-------------AEFV-STPELAAQ  210 (330)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHH-----------TTT-------------CEEC-CHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHH-----------hcC-------------ceeC-CHHHHHhh
Confidence            5899999999999999999999999999999876543321           111             2222 44 45789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhcccC-CCCcEEEEecCCCC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS-SQDRIIGAHFFSPA  450 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~-~~~r~ig~h~~~p~  450 (725)
                      ||+|++++|...+.+..+.+++.+.+++++++++.+++  .....+.+.+. ..-...++++|.|.
T Consensus       211 aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~e  276 (330)
T 2gcg_A          211 SDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPE  276 (330)
T ss_dssp             CSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSS
T ss_pred             CCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccEEEeCCCCCC
Confidence            99999999976654443335666778999988744443  23345555543 23345788988654

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=98.70  E-value=3.1e-08  Score=103.87  Aligned_cols=107  Identities=21%  Similarity=0.238  Sum_probs=73.3

Q ss_pred             CCCCcceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC--hHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccccc
Q 004891          304 KPRGVRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN--SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  380 (725)
Q Consensus       304 ~~~~~~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~--~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~  380 (725)
                      |.+..+||+|||+|.||.++|..++..|+ +|+++|++  ++.++.....+.+..            .......++..++
T Consensus         4 m~~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~------------~~~~~~~~i~~t~   71 (315)
T 3tl2_A            4 MTIKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEAS------------PVQGFDANIIGTS   71 (315)
T ss_dssp             CCCCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHH------------HHHTCCCCEEEES
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhh------------hhccCCCEEEEcC
Confidence            44556899999999999999999999999 99999999  444332221121110            0111123566677


Q ss_pred             CcccccCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891          381 DYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT  423 (725)
Q Consensus       381 ~~~~l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (725)
                      +++++++||+||+++.-              +..+.+++.+.+.+++ |+++++..|
T Consensus        72 d~~a~~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vlvvs  127 (315)
T 3tl2_A           72 DYADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHS-PNAIIVVLT  127 (315)
T ss_dssp             CGGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECC
T ss_pred             CHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEECC
Confidence            88999999999999721              3345667777788886 566554433

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=98.67  E-value=8.1e-08  Score=100.97  Aligned_cols=99  Identities=19%  Similarity=0.243  Sum_probs=70.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCC--CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccc-ccCccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSE  384 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G--~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~  384 (725)
                      |+||+|||+|.||.++|..|+++|  ++|++||+++++++.....+.+...   ..+           ..+.. ++++++
T Consensus         1 m~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~---~~~-----------~~~~~~~~d~~~   66 (309)
T 1hyh_A            1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMA---NLE-----------AHGNIVINDWAA   66 (309)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG---GSS-----------SCCEEEESCGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhh---hcC-----------CCeEEEeCCHHH
Confidence            368999999999999999999999  7999999999887665432221110   000           11222 356688


Q ss_pred             ccCCCEEEEeccCCh------------------HHHHHHHHHHHHhCCCCeEEEe
Q 004891          385 FKDVDMVIEAVIESV------------------PLKQKIFSELEKACPPHCILAT  421 (725)
Q Consensus       385 l~~aDlVIeavpe~~------------------~~k~~v~~~l~~~~~~~~ii~s  421 (725)
                      +++||+||+|++...                  .+.+++++++.++++ +++++.
T Consensus        67 ~~~aDvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~-~~~ii~  120 (309)
T 1hyh_A           67 LADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGF-HGVLVV  120 (309)
T ss_dssp             GTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTC-CSEEEE
T ss_pred             hCCCCEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEE
Confidence            899999999998643                  246788888888774 655544

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=98.64  E-value=2.5e-08  Score=104.58  Aligned_cols=103  Identities=19%  Similarity=0.258  Sum_probs=76.8

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcc
Q 004891          306 RGVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (725)
Q Consensus       306 ~~~~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (725)
                      ++.+||+|||+|.||.++|..++..|+  +|+++|++++.++.....+.+...    ..         ...++..+++++
T Consensus        19 ~~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~----~~---------~~~~i~~t~d~~   85 (330)
T 3ldh_A           19 RSYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSL----FL---------HTAKIVSGKDYS   85 (330)
T ss_dssp             CCCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGG----GS---------CCSEEEEESSSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhh----cc---------cCCeEEEcCCHH
Confidence            356899999999999999999999998  999999999887654433333211    00         123466678888


Q ss_pred             cccCCCEEEEec--------------cCChHHHHHHHHHHHHhCCCCeEEEec
Q 004891          384 EFKDVDMVIEAV--------------IESVPLKQKIFSELEKACPPHCILATN  422 (725)
Q Consensus       384 ~l~~aDlVIeav--------------pe~~~~k~~v~~~l~~~~~~~~ii~s~  422 (725)
                      ++++||+||++.              .++..+++++.+++.+++ |+++++..
T Consensus        86 ~~~daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~-P~a~ilvv  137 (330)
T 3ldh_A           86 VSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHS-PDCLKELH  137 (330)
T ss_dssp             SCSSCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHC-TTCEEEEC
T ss_pred             HhCCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCceEEeC
Confidence            899999999885              345677888888999985 56655433

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=98.64  E-value=7e-09  Score=110.12  Aligned_cols=116  Identities=16%  Similarity=0.057  Sum_probs=80.7

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      -++|+|||+|.||.++|..++..|++|++||++++. +...           +.|             +.. .++ +.++
T Consensus       150 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~-----------~~g-------------~~~-~~l~~~l~  203 (334)
T 2dbq_A          150 GKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVER-----------ELN-------------AEF-KPLEDLLR  203 (334)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHH-----------HHC-------------CEE-CCHHHHHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhHh-----------hcC-------------ccc-CCHHHHHh
Confidence            368999999999999999999999999999999876 3221           011             122 244 4578


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhcccC-CCCcEEEEecCCC
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSP  449 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~-~~~r~ig~h~~~p  449 (725)
                      +||+|++|+|...+.+.-+.+++.+.+++++++++.+.+..+.  .+.+.+. ..-...++|+|.+
T Consensus       204 ~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~  269 (334)
T 2dbq_A          204 ESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEE  269 (334)
T ss_dssp             HCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSS
T ss_pred             hCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCCCC
Confidence            9999999999877554433356667789999886544443333  4444443 2334477898873

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=98.63  E-value=4.3e-08  Score=103.11  Aligned_cols=124  Identities=18%  Similarity=0.325  Sum_probs=81.0

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccc
Q 004891          306 RGVRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (725)
Q Consensus       306 ~~~~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (725)
                      |.++||+|||+|.||.++|..++..|+ +|+++|+++++++.....+.+...   -         .....++..++++++
T Consensus         3 m~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~---~---------~~~~~~v~~t~d~~a   70 (321)
T 3p7m_A            3 MARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCP---I---------EGVDFKVRGTNDYKD   70 (321)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHH---H---------HTCCCCEEEESCGGG
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhh---h---------cCCCcEEEEcCCHHH
Confidence            346799999999999999999999998 999999999876533222221110   0         000123555677899


Q ss_pred             ccCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHh----cccCC-CCcEEEE
Q 004891          385 FKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG----EKTSS-QDRIIGA  444 (725)
Q Consensus       385 l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~----~~~~~-~~r~ig~  444 (725)
                      +++||+||.+..-              +..+.+++...+.+++ |+++++..|  .|+..+.    ..... +.|++|+
T Consensus        71 ~~~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvt--NPvd~~t~~~~k~sg~p~~rviG~  146 (321)
T 3p7m_A           71 LENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNC-PNAFVICIT--NPLDIMVNMLQKFSGVPDNKIVGM  146 (321)
T ss_dssp             GTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECC--SSHHHHHHHHHHHHCCCGGGEEEE
T ss_pred             HCCCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHC-CCcEEEEec--CchHHHHHHHHHhcCCCHHHEEee
Confidence            9999999999631              3456667777888887 666655433  3333222    22222 3567765

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=98.62  E-value=6.1e-08  Score=101.91  Aligned_cols=104  Identities=19%  Similarity=0.227  Sum_probs=73.5

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccc
Q 004891          306 RGVRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (725)
Q Consensus       306 ~~~~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (725)
                      ++++||+|||+|.||.++|..|+..|+ +|+++|++++.++.....+.+.... ..           ...++..++++++
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~-~~-----------~~~~v~~t~d~~a   72 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPV-DG-----------FDAKFTGANDYAA   72 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHH-HT-----------CCCCEEEESSGGG
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhh-cC-----------CCCEEEEeCCHHH
Confidence            346799999999999999999999999 9999999998865433223222110 00           0124555678899


Q ss_pred             ccCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEec
Q 004891          385 FKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATN  422 (725)
Q Consensus       385 l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~  422 (725)
                      +++||+||.++.-              +..+.+++...+.+++ |+++++..
T Consensus        73 ~~~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivv  123 (324)
T 3gvi_A           73 IEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA-PEAFVICI  123 (324)
T ss_dssp             GTTCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHC-TTCEEEEC
T ss_pred             HCCCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEec
Confidence            9999999999731              3345666667788887 66665543

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=98.62  E-value=1.3e-07  Score=99.34  Aligned_cols=100  Identities=18%  Similarity=0.149  Sum_probs=69.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~--G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      +||+|||+|.||.++|..|++.  |++|++||+++++++.....+.+...            ......++..+++++.++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~------------~~~~~~~i~~t~d~~~l~   68 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGP------------VGLFDTKVTGSNDYADTA   68 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHH------------HHTCCCEEEEESCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhh------------cccCCcEEEECCCHHHHC
Confidence            3899999999999999999985  78999999999877643211111100            000113466667887799


Q ss_pred             CCCEEEEeccCC--------------hHHHHHHHHHHHHhCCCCeEEEe
Q 004891          387 DVDMVIEAVIES--------------VPLKQKIFSELEKACPPHCILAT  421 (725)
Q Consensus       387 ~aDlVIeavpe~--------------~~~k~~v~~~l~~~~~~~~ii~s  421 (725)
                      +||+||+|+|..              ..+.+++.+.+.+++ ++++++.
T Consensus        69 ~aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~viv  116 (310)
T 1guz_A           69 NSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIV  116 (310)
T ss_dssp             TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEE
T ss_pred             CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEE
Confidence            999999999632              245567777888886 5554443

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=98.60  E-value=1.4e-08  Score=107.42  Aligned_cols=111  Identities=14%  Similarity=0.051  Sum_probs=78.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||+|.||.++|..+...|++|++||++++..+                +             .....++ +.+++
T Consensus       165 ~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~----------------g-------------~~~~~~l~ell~~  215 (333)
T 3ba1_A          165 KRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNT----------------N-------------YTYYGSVVELASN  215 (333)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTC----------------C-------------SEEESCHHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhcc----------------C-------------ceecCCHHHHHhc
Confidence            5799999999999999999999999999999875411                1             1123344 55789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhcccC-CCCcEEEEecCC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFFS  448 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~-~~~r~ig~h~~~  448 (725)
                      ||+|++++|...+.+.-+-+++.+.++++++|++.+++..+  ..+.+.+. ...+..++++|.
T Consensus       216 aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~  279 (333)
T 3ba1_A          216 SDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFE  279 (333)
T ss_dssp             CSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCT
T ss_pred             CCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCC
Confidence            99999999976654433334555667899988754444333  35555554 334667888886

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=98.59  E-value=1.7e-08  Score=107.02  Aligned_cols=113  Identities=18%  Similarity=0.118  Sum_probs=77.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||+|.||.++|..+...|++|++||++++. +.+.+           .|             +... ++ +.+++
T Consensus       147 ~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~-----------~g-------------~~~~-~l~e~l~~  200 (333)
T 2d0i_A          147 KKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEKE-----------LK-------------ARYM-DIDELLEK  200 (333)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHHH-----------HT-------------EEEC-CHHHHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhhhh-----------cC-------------ceec-CHHHHHhh
Confidence            58999999999999999999999999999999875 32210           01             1222 34 45789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhcccCC-CCcEEEEecCC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSS-QDRIIGAHFFS  448 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~~-~~r~ig~h~~~  448 (725)
                      ||+|++|+|...+.+..+-+++.+.++++ ++++.+.+..+.  .+.+.+.. .-...|+|+|.
T Consensus       201 aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~  263 (333)
T 2d0i_A          201 SDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFE  263 (333)
T ss_dssp             CSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCS
T ss_pred             CCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecCCC
Confidence            99999999977655444434556678888 775443333332  34444433 33568899987

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=98.58  E-value=1.5e-07  Score=99.45  Aligned_cols=107  Identities=26%  Similarity=0.350  Sum_probs=73.8

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l  385 (725)
                      ++||+|||+|.||..+|..|+++|+  +|+++|++++.++.....+.+.+.  . .+          ...+..+++++++
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~--~-~~----------~~~v~~~~~~~~~   73 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSS--F-YP----------TVSIDGSDDPEIC   73 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGG--G-ST----------TCEEEEESCGGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhh--h-cC----------CeEEEeCCCHHHh
Confidence            4699999999999999999999999  999999998776521111111110  0 00          0134444466788


Q ss_pred             cCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEecCCCCCh
Q 004891          386 KDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTIDL  428 (725)
Q Consensus       386 ~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~  428 (725)
                      ++||+||.+++.              +..+.++++.++.++ .++++|++.+.+...
T Consensus        74 ~~aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~~~  129 (319)
T 1lld_A           74 RDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVDI  129 (319)
T ss_dssp             TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHH
T ss_pred             CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCchHH
Confidence            999999999931              235666888888887 577777665555443

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=98.57  E-value=5.6e-08  Score=102.35  Aligned_cols=111  Identities=20%  Similarity=0.253  Sum_probs=73.3

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (725)
                      .++||+|||+|.||.++|..++..|.  +|+++|++++.++.....+.+.   ....+.         .-++. ++++++
T Consensus         5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~---~~~~~~---------~~~i~-~~~~~a   71 (316)
T 1ldn_A            5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHG---KVFAPK---------PVDIW-HGDYDD   71 (316)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHH---TTSSSS---------CCEEE-ECCGGG
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHH---hhhcCC---------CeEEE-cCcHHH
Confidence            45799999999999999999998886  8999999987554322222110   000000         01122 345688


Q ss_pred             ccCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhc
Q 004891          385 FKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGE  433 (725)
Q Consensus       385 l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~  433 (725)
                      +++||+||++++              ++..+++++.+.+.+++ |+++++..  +.|+..+..
T Consensus        72 l~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~~iv~--tNPv~~~~~  131 (316)
T 1ldn_A           72 CRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVA--TNPVDILTY  131 (316)
T ss_dssp             TTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEEC--SSSHHHHHH
T ss_pred             hCCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHC-CCCEEEEe--CCchHHHHH
Confidence            999999999953              34478889999999997 55544332  335554443

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=98.57  E-value=6.5e-08  Score=105.73  Aligned_cols=106  Identities=16%  Similarity=0.110  Sum_probs=75.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH-CCCcEEEEe---CChHHHHHHHHHHHHHHHhhHHcC------CCCHHHHHHhhcCcc-
Q 004891          309 RKVAVIGGGLMGSGIATAHIL-NNIYVVLKE---VNSEYLLKGIKTIEANVRGLVTRG------KLTQDKANNALKMLK-  377 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~-~G~~V~~~d---~~~e~~~~~~~~i~~~l~~~~~~g------~~~~~~~~~~~~~i~-  377 (725)
                      +||+|||+|.||.++|..|++ +|++|++||   ++++.++.+.+          +.+      ..... ......++. 
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~----------~~g~~~~~~~~~~~-~~~~~~~~~~   71 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALG----------ADELTVIVNEKDGT-QTEVKSRPKV   71 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHT----------TSCEEEEEECSSSC-EEEEEECCSE
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHh----------hccceeeeecCCCc-cceeeccceE
Confidence            589999999999999999998 599999999   87777655321          111      00000 000012333 


Q ss_pred             cccCc-ccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 004891          378 GVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID  427 (725)
Q Consensus       378 ~~~~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~  427 (725)
                      .++++ +++++||+||+|||.  ....++++++.+.++++++|++++++..
T Consensus        72 ~~~~~~~a~~~aD~Vilav~~--~~~~~v~~~l~~~l~~~~ivv~~~~~~G  120 (404)
T 3c7a_A           72 ITKDPEIAISGADVVILTVPA--FAHEGYFQAMAPYVQDSALIVGLPSQAG  120 (404)
T ss_dssp             EESCHHHHHTTCSEEEECSCG--GGHHHHHHHHTTTCCTTCEEEETTCCTT
T ss_pred             EeCCHHHHhCCCCEEEEeCch--HHHHHHHHHHHhhCCCCcEEEEcCCCcc
Confidence            45565 457899999999994  4467899999999999999988665554

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.55  E-value=1.4e-07  Score=101.13  Aligned_cols=103  Identities=16%  Similarity=0.095  Sum_probs=72.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCc-ccccCc-ccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML-KGVLDY-SEF  385 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~~-~~l  385 (725)
                      ++||+|||+|.||..+|..|+++|++|++||++++.++...+..    ...+......      ....+ ..++++ +.+
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~~   73 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRG----AIIAEGPGLA------GTAHPDLLTSDIGLAV   73 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHT----SEEEESSSCC------EEECCSEEESCHHHHH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcC----CeEEeccccc------cccccceecCCHHHHH
Confidence            46899999999999999999999999999999998876643210    0000000000      00112 234455 447


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEec
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN  422 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~  422 (725)
                      +++|+||+|+|...  ..++++++.+.++++++|++.
T Consensus        74 ~~~D~vi~~v~~~~--~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           74 KDADVILIVVPAIH--HASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             TTCSEEEECSCGGG--HHHHHHHHGGGCCTTCEEEES
T ss_pred             hcCCEEEEeCCchH--HHHHHHHHHHhCCCCCEEEEc
Confidence            89999999999554  368889999999999977765

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=98.55  E-value=2.2e-07  Score=102.34  Aligned_cols=77  Identities=18%  Similarity=0.199  Sum_probs=56.3

Q ss_pred             cceEEEEcCCCCc--HHHHHHHHHC----CCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccC
Q 004891          308 VRKVAVIGGGLMG--SGIATAHILN----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (725)
Q Consensus       308 ~~kIaVIG~G~mG--~~iA~~l~~~----G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (725)
                      .+||+|||+|.||  .++|..|++.    |.+|++||++++.++.........+.    ...        ...+++.++|
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~----~~~--------~~~~I~~ttD   70 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVE----EVG--------ADLKFEKTMN   70 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHH----HTT--------CCCEEEEESC
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhc----cCC--------CCcEEEEECC
Confidence            3699999999974  5567788754    88999999999998875543322221    111        1245777888


Q ss_pred             c-ccccCCCEEEEecc
Q 004891          382 Y-SEFKDVDMVIEAVI  396 (725)
Q Consensus       382 ~-~~l~~aDlVIeavp  396 (725)
                      + +++++||+||++++
T Consensus        71 ~~eal~dAD~VIiaag   86 (480)
T 1obb_A           71 LDDVIIDADFVINTAM   86 (480)
T ss_dssp             HHHHHTTCSEEEECCC
T ss_pred             HHHHhCCCCEEEECCC
Confidence            7 78999999999995

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=98.52  E-value=1e-07  Score=99.60  Aligned_cols=91  Identities=19%  Similarity=0.245  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHH------HHHHHHHHhCCC
Q 004891          621 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYT------SLKKWSQLYGNF  694 (725)
Q Consensus       621 ~~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~------~~~~~~~~~~~~  694 (725)
                      +-.|.||++.++++||++++++|++ |++|||.+|+.|+|+|...-|||+++|..|++....      .++.+...++  
T Consensus       191 pGFi~NRl~~~~~~EA~~lv~eGva-s~edID~~~~~g~g~~~a~mGPf~~~Dl~G~~~~~~~~~~~~~~~~~~~~~~--  267 (319)
T 3ado_A          191 DGFVLNRLQYAIISEAWRLVEEGIV-SPSDLDLVMSDGLGMRYAFIGPLETMHLNAEGMLSYCDRYSEGMKRVLKSFG--  267 (319)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHTTHHHHHTTSCHHHHHHHTTTSHHHHHHHHHHHHHHHHHTCC--
T ss_pred             CCEeHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCCCCcchhhhhhhcCccHHHHHHHhhHhHHHHHHHcC--
Confidence            4579999999999999999999999 999999999999998733349999999999764432      2333333333  


Q ss_pred             CCCCHHHHHHH-HcCCCCCCCC
Q 004891          695 FKPSRFLEERA-TKGIPLSAPV  715 (725)
Q Consensus       695 ~~p~~~l~~~~-~~g~gf~~~~  715 (725)
                       ..+.+-.++. +.++|||.+.
T Consensus       268 -~~p~~~~~~~~k~~~g~~~~~  288 (319)
T 3ado_A          268 -SIPEFSGATVEKVNQAMCKKV  288 (319)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHS
T ss_pred             -cccccchHHHHHHHHHHhhcC
Confidence             2233333333 4568888873

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=98.47  E-value=3.2e-08  Score=102.29  Aligned_cols=124  Identities=10%  Similarity=-0.039  Sum_probs=84.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||+|.||.++|..+...|++|++||++++..+.                             ....+++ +.+++
T Consensus       123 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----------------------------~~~~~~l~ell~~  173 (290)
T 3gvx_A          123 KALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV-----------------------------DVISESPADLFRQ  173 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC-----------------------------SEECSSHHHHHHH
T ss_pred             chheeeccCchhHHHHHHHHhhCcEEEEEecccccccc-----------------------------ccccCChHHHhhc
Confidence            68999999999999999999999999999998754211                             1123344 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhcccC-CCCcEEEEecCC-----CCCCCCeeeEe
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS-SQDRIIGAHFFS-----PAHVMPLLEIV  459 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~-~~~r~ig~h~~~-----p~~~~~lveii  459 (725)
                      ||+|+.++|...+...-+-.+..+.++++++++..+.+-.  ...+.+.+. ..-...++..|.     |.+..+-+-++
T Consensus       174 aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~pL~~~~nvilT  253 (290)
T 3gvx_A          174 SDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPEITETNLRNAILS  253 (290)
T ss_dssp             CSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTSCCSCCCSSEEEC
T ss_pred             cCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccCCcccchhhhhhhhcC
Confidence            9999999996666544444667788999999875444433  334444443 233455555543     33444556666


Q ss_pred             cC
Q 004891          460 RT  461 (725)
Q Consensus       460 ~~  461 (725)
                      |+
T Consensus       254 PH  255 (290)
T 3gvx_A          254 PH  255 (290)
T ss_dssp             CS
T ss_pred             cc
Confidence            65

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=98.45  E-value=5.7e-08  Score=109.50  Aligned_cols=149  Identities=13%  Similarity=0.094  Sum_probs=94.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||+|.||+++|..+...|++|++||++... +.+.           +.|             +... ++ +.+++
T Consensus       143 ~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-----------~~g-------------~~~~-~l~e~~~~  196 (529)
T 1ygy_A          143 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP-ARAA-----------QLG-------------IELL-SLDDLLAR  196 (529)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCH-HHHH-----------HHT-------------CEEC-CHHHHHHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------cEEc-CHHHHHhc
Confidence            68999999999999999999999999999998642 2211           111             1112 33 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHH--HhcccCCC-C-----cEEEEecC--CCCCCCCeee
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI--VGEKTSSQ-D-----RIIGAHFF--SPAHVMPLLE  457 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~--l~~~~~~~-~-----r~ig~h~~--~p~~~~~lve  457 (725)
                      ||+|+.|+|.......-+-+++.+.+++++++++.+.+-.+.+  +.+.+... -     .|++.||.  .|....+-+-
T Consensus       197 aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vi  276 (529)
T 1ygy_A          197 ADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVV  276 (529)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEE
T ss_pred             CCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEE
Confidence            9999999996544333222346677899999886665544443  33443221 1     12233332  1222234466


Q ss_pred             EecCCC-CCHHHHHH-----HHHHHHHcCCee
Q 004891          458 IVRTER-TSAQVILD-----LMTVGKIIKKVP  483 (725)
Q Consensus       458 ii~~~~-t~~e~~~~-----~~~l~~~lGk~~  483 (725)
                      ++|+.. +++++.+.     +.++...++..+
T Consensus       277 lTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~~  308 (529)
T 1ygy_A          277 VTPHLGASTAEAQDRAGTDVAESVRLALAGEF  308 (529)
T ss_dssp             ECSSCSSCBHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             EccccCCCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence            788776 67887765     667777776544

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1

Probab=98.44  E-value=1e-06  Score=86.89  Aligned_cols=136  Identities=13%  Similarity=0.103  Sum_probs=94.2

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEE
Q 004891           27 ALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (725)
Q Consensus        27 al~~~~~~~l~~~l~~~~~~~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (725)
                      .++..+.+.+.+.|..++.++. +.|+|  .+.|      +++.                ....++ +.|..+++||++.
T Consensus        47 ~I~~~~a~~i~~~L~~l~~~~~-k~I~l~INSPG------Gsv~----------------a~~~I~-~~i~~~~~pV~t~  102 (215)
T 2f6i_A           47 EINKKTADELISQLLYLDNINH-NDIKIYINSPG------GSIN----------------EGLAIL-DIFNYIKSDIQTI  102 (215)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCC-SCEEEEEEECC------BCHH----------------HHHHHH-HHHHHSSSCEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhCCC-CcEEEEEECCC------CCHH----------------HHHHHH-HHHHhcCCCEEEE
Confidence            4788889999999998876655 66666  3433      2221                122445 6688899999999


Q ss_pred             EcccccchhhHHhhhcCE--EEeeCCceEeCcccccCCCC---Cchh----hc--------hHhhh--hCHHHHHHHHHc
Q 004891          105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIP---GFGG----TQ--------RLPRL--VGLSKAIEMMLL  165 (725)
Q Consensus       105 v~G~a~GgG~~lalacD~--~ia~~~a~~~~pe~~~Gl~p---~~g~----~~--------~l~r~--vG~~~a~~l~l~  165 (725)
                      +.|.|..+|.-++++||.  |+|.+.+.+++.....|...   +...    ..        .+.+.  .......+++-.
T Consensus       103 v~g~AAS~g~~Ia~agd~g~i~a~p~s~i~ih~p~~~~~G~~~di~~~~~el~~~~~~i~~~ya~~~g~~~e~i~~~~~~  182 (215)
T 2f6i_A          103 SFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDR  182 (215)
T ss_dssp             EEEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHT
T ss_pred             EeeEhHhHHHHHHHcCCcccEEEcCCCEEEEeccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhC
Confidence            999999999999999999  99999999987665433210   0000    00        00111  234555566656


Q ss_pred             CCCCCHHHHHHcCCcceecCc
Q 004891          166 SKSITSEEGWKLGLIDAVVTS  186 (725)
Q Consensus       166 g~~~~a~eA~~~Glv~~vv~~  186 (725)
                      +..++++||++.||||++.+.
T Consensus       183 ~~~lta~eA~e~GLiD~I~~~  203 (215)
T 2f6i_A          183 DYYMNALEAKQYGIIDEVIET  203 (215)
T ss_dssp             TCEECHHHHHHHTSCSEECCC
T ss_pred             CeecCHHHHHHCCCCCEecCC
Confidence            677799999999999999854

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=98.43  E-value=2.2e-07  Score=97.91  Aligned_cols=102  Identities=10%  Similarity=0.005  Sum_probs=70.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeC-ChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEV-NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~-~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      ++|+|||+|.||.++|..+...|++|++||+ +++.. .+.           +.|             +...+++ +.++
T Consensus       147 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~-----------~~g-------------~~~~~~l~ell~  201 (320)
T 1gdh_A          147 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSS-DEA-----------SYQ-------------ATFHDSLDSLLS  201 (320)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHH-HHH-----------HHT-------------CEECSSHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChh-hhh-----------hcC-------------cEEcCCHHHHHh
Confidence            6899999999999999999999999999999 87652 211           111             1222234 5678


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC--ChHHHhccc
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKT  435 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~  435 (725)
                      +||+|+.++|...+...-+-++..+.++++++++..+++-  ....+.+.+
T Consensus       202 ~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL  252 (320)
T 1gdh_A          202 VSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAAL  252 (320)
T ss_dssp             HCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred             hCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHH
Confidence            9999999999665533322245667789999987655542  233444444

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=98.43  E-value=5.9e-07  Score=93.15  Aligned_cols=102  Identities=18%  Similarity=0.273  Sum_probs=69.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      +||+|||+|.||.++|..|+..|+  +|++||++++.++.....+.+....+   .         ....+..++++++++
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~---~---------~~~~i~~t~d~~a~~   68 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGI---D---------KYPKIVGGADYSLLK   68 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTT---T---------CCCEEEEESCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhc---C---------CCCEEEEeCCHHHhC
Confidence            489999999999999999999998  99999999988663222222211100   0         012455566788999


Q ss_pred             CCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891          387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT  423 (725)
Q Consensus       387 ~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (725)
                      +||+||.+..-              +..+.+++.+.+.+++ |+++++..|
T Consensus        69 ~aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvs  118 (294)
T 1oju_A           69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVT  118 (294)
T ss_dssp             TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECS
T ss_pred             CCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeC
Confidence            99999999732              2234455556677774 666665443

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A

Probab=98.41  E-value=1.9e-06  Score=83.89  Aligned_cols=137  Identities=20%  Similarity=0.250  Sum_probs=98.6

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEE
Q 004891           27 ALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (725)
Q Consensus        27 al~~~~~~~l~~~l~~~~~~~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (725)
                      .++..+.+.+.+.|..++.++..+.|+|  .+.|+      ++.                ....++ +.|..+++||++.
T Consensus        35 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPGG------~v~----------------~~~~I~-~~i~~~~~~V~t~   91 (203)
T 3qwd_A           35 QIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGG------SVT----------------AGFAIY-DTIQHIKPDVQTI   91 (203)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCB------CHH----------------HHHHHH-HHHHHSSSCEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCC------CHH----------------HHHHHH-HHHHHhcCCcEEE
Confidence            5889999999999999987766676665  34332      221                122445 6688899999999


Q ss_pred             EcccccchhhHHhhhcC--EEEeeCCceEeCcccccCCCCCchh-h---------------chHhhh--hCHHHHHHHHH
Q 004891          105 VEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGG-T---------------QRLPRL--VGLSKAIEMML  164 (725)
Q Consensus       105 v~G~a~GgG~~lalacD--~~ia~~~a~~~~pe~~~Gl~p~~g~-~---------------~~l~r~--vG~~~a~~l~l  164 (725)
                      +.|.|.++|..++++||  .|++.++++|......-|. -+... .               ..+.+.  .......+++-
T Consensus        92 ~~G~AaSag~~i~~ag~~g~r~~~p~a~imiHqP~~~~-~G~a~di~~~a~~l~~~~~~~~~~~a~~tG~~~e~i~~~~~  170 (203)
T 3qwd_A           92 CIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGA-QGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTD  170 (203)
T ss_dssp             EEEEEETHHHHHHHTSCTTCEEECTTCEEECCCCSSST-TTTSCHHHHHHHHHTTHHHHHHHHHHHHHCCCHHHHHHHHT
T ss_pred             EeeeehhHHHHHHHcCCcCeEEEcCCceEEEecccccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhh
Confidence            99999999999999999  6999999999886554321 11100 0               001111  23455666777


Q ss_pred             cCCCCCHHHHHHcCCcceecCcc
Q 004891          165 LSKSITSEEGWKLGLIDAVVTSE  187 (725)
Q Consensus       165 ~g~~~~a~eA~~~Glv~~vv~~~  187 (725)
                      ....++|+||++.||||+|+...
T Consensus       171 ~d~~lta~EA~e~GliD~I~~~~  193 (203)
T 3qwd_A          171 RDNFLTAEEAKEYGLIDEVMVPE  193 (203)
T ss_dssp             SCCCEEHHHHHHHTSCSEECCCC
T ss_pred             cCceecHHHHHHcCCcCEecCCc
Confidence            77889999999999999999654

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=98.40  E-value=8.3e-07  Score=93.11  Aligned_cols=110  Identities=18%  Similarity=0.061  Sum_probs=73.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  388 (725)
                      +||+|||+|.||+.+|..|+ +|++|++|+++++.++...+           .|......-......+  ..+.+.+.++
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~-----------~G~~~~~~~~~~~~~~--~~~~~~~~~~   68 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQS-----------EGIRLYKGGEEFRADC--SADTSINSDF   68 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHH-----------HCEEEEETTEEEEECC--EEESSCCSCC
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHh-----------CCceEecCCCeecccc--cccccccCCC
Confidence            58999999999999999999 99999999999987665432           1110000000000001  1112456789


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH-HHhcccC
Q 004891          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTS  436 (725)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~-~l~~~~~  436 (725)
                      |+||.||+  .....+++..+.+. .+++ |++...++... .+.+.++
T Consensus        69 D~vilavK--~~~~~~~l~~l~~~-~~~~-ivs~~nGi~~~e~l~~~~~  113 (307)
T 3ego_A           69 DLLVVTVK--QHQLQSVFSSLERI-GKTN-ILFLQNGMGHIHDLKDWHV  113 (307)
T ss_dssp             SEEEECCC--GGGHHHHHHHTTSS-CCCE-EEECCSSSHHHHHHHTCCC
T ss_pred             CEEEEEeC--HHHHHHHHHHhhcC-CCCe-EEEecCCccHHHHHHHhCC
Confidence            99999998  55566777877664 6777 77888888876 4444433

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=98.38  E-value=4.7e-07  Score=88.04  Aligned_cols=134  Identities=16%  Similarity=0.174  Sum_probs=95.4

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEE--cCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEE
Q 004891           27 ALAIPIVAGLKDKFEEATSRDDVKAIVLT--GNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (725)
Q Consensus        27 al~~~~~~~l~~~l~~~~~~~~v~~vVl~--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (725)
                      .++..+.+.+.+.|..++.+++++.|+|.  +.|+      ++.                ....++ +.|..+++||++.
T Consensus        34 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPGG------~v~----------------a~~~I~-~~i~~~~~pV~~~   90 (193)
T 1yg6_A           34 QVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGG------VIT----------------AGMSIY-DTMQFIKPDVSTI   90 (193)
T ss_dssp             SBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCB------CHH----------------HHHHHH-HHHHHSSSCEEEE
T ss_pred             EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECcCC------CHH----------------HHHHHH-HHHHhcCCCEEEE
Confidence            47888999999999999877667777773  3332      221                122445 6688899999999


Q ss_pred             EcccccchhhHHhhhcCE--EEeeCCceEeCcccccCCCCCchhh-c-----------------hHhhhh--CHHHHHHH
Q 004891          105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGT-Q-----------------RLPRLV--GLSKAIEM  162 (725)
Q Consensus       105 v~G~a~GgG~~lalacD~--~ia~~~a~~~~pe~~~Gl~p~~g~~-~-----------------~l~r~v--G~~~a~~l  162 (725)
                      +.|.|..+|.-++++||.  |+|.+++.++......|.   .|-. .                 .+.+..  ......++
T Consensus        91 v~g~AaS~g~~Ia~ag~~~~r~a~p~s~i~ih~p~~~~---~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~  167 (193)
T 1yg6_A           91 CMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGY---QGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERD  167 (193)
T ss_dssp             EEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEE---EEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             EeeeHHHHHHHHHHCCCcCcEEEecCcEEEEEeccccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            999999999999999999  999999998876544321   1110 0                 011222  23444455


Q ss_pred             HHcCCCCCHHHHHHcCCcceecCc
Q 004891          163 MLLSKSITSEEGWKLGLIDAVVTS  186 (725)
Q Consensus       163 ~l~g~~~~a~eA~~~Glv~~vv~~  186 (725)
                      +-.+..++++||++.||||++.++
T Consensus       168 ~~~~~~~ta~eA~~~GliD~i~~~  191 (193)
T 1yg6_A          168 TERDRFLSAPEAVEYGLVDSILTH  191 (193)
T ss_dssp             TSSCEEEEHHHHHHHTSSSEECCC
T ss_pred             hcCCeEEcHHHHHHcCCCCEecCC
Confidence            445667799999999999999854

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=98.36  E-value=4.6e-08  Score=102.13  Aligned_cols=163  Identities=12%  Similarity=0.034  Sum_probs=103.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccc-cC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF-KD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l-~~  387 (725)
                      +||+|||+|.||+.+|..|+++|++|++|+++++.++.           ....|...        ..+. .+..+.+ ++
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~-----------~~~~g~~~--------~~~~-~~~~~~~~~~   62 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITY-----------YTVPHAPA--------QDIV-VKGYEDVTNT   62 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEE-----------ESSTTSCC--------EEEE-EEEGGGCCSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEE-----------EecCCeec--------ccee-cCchHhcCCC
Confidence            58999999999999999999999999999999654321           00111100        0111 1223444 88


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEE------ecCCCCCCC-CeeeEec
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGA------HFFSPAHVM-PLLEIVR  460 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~------h~~~p~~~~-~lveii~  460 (725)
                      +|+||.||+  .....++++++.+.++++++|++...++...+.   +. ..++++.      ....|-... ..-.+..
T Consensus        63 ~D~vilavk--~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~---~~-~~~v~~g~~~~~a~~~~pg~v~~~~~~~~~  136 (294)
T 3g17_A           63 FDVIIIAVK--THQLDAVIPHLTYLAHEDTLIILAQNGYGQLEH---IP-FKNVCQAVVYISGQKKGDVVTHFRDYQLRI  136 (294)
T ss_dssp             EEEEEECSC--GGGHHHHGGGHHHHEEEEEEEEECCSSCCCGGG---CC-CSCEEECEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCEEEEeCC--ccCHHHHHHHHHHhhCCCCEEEEeccCcccHhh---CC-CCcEEEEEEEEEEEEcCCCEEEECCCEEec
Confidence            999999998  566778889999999999998888888876654   22 2233322      111221110 0011111


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEEEcCCcchhhhhhhHH
Q 004891          461 TERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFP  500 (725)
Q Consensus       461 ~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~nRl~~a  500 (725)
                      +   +.+..+.+.+++..-|-...+..|..+.....++..
T Consensus       137 ~---~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N  173 (294)
T 3g17_A          137 Q---DNALTRQFRDLVQDSQIDIVLEANIQQAIWYKLLVN  173 (294)
T ss_dssp             E---CSHHHHHHHHHTTTSSCEEEEESSHHHHHHHHHHHH
T ss_pred             C---ccHHHHHHHHHHHhCCCceEEChHHHHHHHHHHHHH
Confidence            2   345667777777777766666677666555555443

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=98.34  E-value=2.5e-07  Score=97.28  Aligned_cols=113  Identities=10%  Similarity=0.065  Sum_probs=77.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||+|.||.++|..+...|++|++||++++..+..                          .......++ +.+++
T Consensus       138 ktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--------------------------~~~~~~~~l~ell~~  191 (324)
T 3evt_A          138 QQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHF--------------------------HETVAFTATADALAT  191 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTC--------------------------SEEEEGGGCHHHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhH--------------------------hhccccCCHHHHHhh
Confidence            689999999999999999999999999999986542110                          011112334 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhcccCC-CCcEEEEecC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFF  447 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~-~~r~ig~h~~  447 (725)
                      ||+|+.++|-..+...-+-.+..+.++++++++..+.+  .....+.+.+.. .-...++..|
T Consensus       192 aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~  254 (324)
T 3evt_A          192 ANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVT  254 (324)
T ss_dssp             CSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSC
T ss_pred             CCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCC
Confidence            99999999976665544446677788999998754433  233355555432 2344555554

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=98.34  E-value=7.1e-08  Score=103.43  Aligned_cols=110  Identities=22%  Similarity=0.152  Sum_probs=79.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--------cEEEEeCChHHHHH-HHHHHHHHHHhhHHc-CCCCHHHHHHhhcCccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI--------YVVLKEVNSEYLLK-GIKTIEANVRGLVTR-GKLTQDKANNALKMLKG  378 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~--------~V~~~d~~~e~~~~-~~~~i~~~l~~~~~~-g~~~~~~~~~~~~~i~~  378 (725)
                      .||+|||+|.||+++|..|+++|+        +|++|.++++...+ ..+.+    ....++ ..+..-   .....+..
T Consensus        35 ~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~i----n~~~~N~~YLpgv---~Lp~~i~~  107 (391)
T 4fgw_A           35 FKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEII----NTRHQNVKYLPGI---TLPDNLVA  107 (391)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHH----TTTCCBTTTBTTC---CCCSSEEE
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHH----HhcCcCcccCCCC---cCCCCcEE
Confidence            489999999999999999999875        49999998763211 11111    111111 111100   01245777


Q ss_pred             ccCc-ccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 004891          379 VLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID  427 (725)
Q Consensus       379 ~~~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~  427 (725)
                      ++|+ +++++||+||.+||  .+..+.+++++.+++++++++++.+.++.
T Consensus       108 t~dl~~al~~ad~ii~avP--s~~~r~~l~~l~~~~~~~~~iv~~~KGie  155 (391)
T 4fgw_A          108 NPDLIDSVKDVDIIVFNIP--HQFLPRICSQLKGHVDSHVRAISCLKGFE  155 (391)
T ss_dssp             ESCHHHHHTTCSEEEECSC--GGGHHHHHHHHTTTSCTTCEEEECCCSCE
T ss_pred             eCCHHHHHhcCCEEEEECC--hhhhHHHHHHhccccCCCceeEEeccccc
Confidence            8887 67899999999999  88899999999999999999988887764

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=98.33  E-value=8.2e-07  Score=92.87  Aligned_cols=102  Identities=17%  Similarity=0.212  Sum_probs=68.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      +||+|||+|.||.++|..++..|+  +|+++|+++++++.....+.+..... ...           .++..++++++++
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~-~~~-----------~~v~~~~~~~a~~   68 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIH-GFD-----------TRVTGTNDYGPTE   68 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHH-TCC-----------CEEEEESSSGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhcccccc-CCC-----------cEEEECCCHHHhC
Confidence            489999999999999999999988  99999999987654322222211100 000           1233356779999


Q ss_pred             CCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891          387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT  423 (725)
Q Consensus       387 ~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (725)
                      +||+||.+.+-              +..+.+++...+.+++ |+++++..|
T Consensus        69 ~aDvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvt  118 (314)
T 3nep_X           69 DSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGS-PDSTIIVVA  118 (314)
T ss_dssp             TCSEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTTC-TTCEEEECC
T ss_pred             CCCEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEecC
Confidence            99999999742              2234445556677765 566655433

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=98.33  E-value=1.8e-06  Score=91.24  Aligned_cols=111  Identities=16%  Similarity=0.108  Sum_probs=66.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||+|.||.++|..+...|++|++||++++..                .+             .....++ +.+++
T Consensus       172 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~----------------~~-------------~~~~~sl~ell~~  222 (340)
T 4dgs_A          172 KRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSG----------------VD-------------WIAHQSPVDLARD  222 (340)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCTT----------------SC-------------CEECSSHHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCcccc----------------cC-------------ceecCCHHHHHhc
Confidence            689999999999999999999999999999987530                00             1122344 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhcccCC-CCcEEEEecCC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSS-QDRIIGAHFFS  448 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~~-~~r~ig~h~~~  448 (725)
                      ||+|+.++|...+...-+-++..+.++++++++..+.+-.+.  .+.+.+.. .-...++..|.
T Consensus       223 aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~  286 (340)
T 4dgs_A          223 SDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFV  286 (340)
T ss_dssp             CSEEEECC----------CHHHHHHTTTTCEEEECSCC--------------CCSSEEEESCCS
T ss_pred             CCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcC
Confidence            999999999766655554467778899999987554443333  34444432 22345555553

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=98.32  E-value=7.3e-07  Score=93.31  Aligned_cols=114  Identities=17%  Similarity=0.099  Sum_probs=74.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||+|.||.++|..+...|++|++||++++. +.+.           +.|             +.. .++ +.+++
T Consensus       143 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~-----------~~g-------------~~~-~~l~ell~~  196 (307)
T 1wwk_A          143 KTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERAK-----------EVN-------------GKF-VDLETLLKE  196 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHH-----------HTT-------------CEE-CCHHHHHHH
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHh-----------hcC-------------ccc-cCHHHHHhh
Confidence            68999999999999999999999999999999865 2211           111             111 133 55788


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhcccC-CCCcEEEEecCC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFS  448 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~-~~~r~ig~h~~~  448 (725)
                      ||+|+.++|...+.+.-+-.+..+.++++++++..+++-.+.  .+.+.+. ..-.-.++.+|.
T Consensus       197 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ga~lDv~~  260 (307)
T 1wwk_A          197 SDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFE  260 (307)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCS
T ss_pred             CCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEecCC
Confidence            999999999666543322245566789999887555543332  4444443 222334555443

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=98.32  E-value=8.8e-07  Score=93.17  Aligned_cols=104  Identities=27%  Similarity=0.330  Sum_probs=70.1

Q ss_pred             CCCcceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcc-cccC
Q 004891          305 PRGVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK-GVLD  381 (725)
Q Consensus       305 ~~~~~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~-~~~~  381 (725)
                      .+..+||+|||+|.||.++|..|+..|+  +|+++|+++++++.....+.+... ...             ..+. .+++
T Consensus         2 ~~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~-~~~-------------~~v~i~~~~   67 (326)
T 3pqe_A            2 NKHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKA-FAP-------------QPVKTSYGT   67 (326)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGG-GSS-------------SCCEEEEEC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccc-ccc-------------CCeEEEeCc
Confidence            3456799999999999999999999998  999999999887654333322110 000             0112 2456


Q ss_pred             cccccCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891          382 YSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT  423 (725)
Q Consensus       382 ~~~l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (725)
                      ++++++||+||.++..              +..+.+++.+.+.+++ |+++++..|
T Consensus        68 ~~a~~~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~-p~a~vlvvt  122 (326)
T 3pqe_A           68 YEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASG-FDGIFLVAT  122 (326)
T ss_dssp             GGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTT-CCSEEEECS
T ss_pred             HHHhCCCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhc-CCeEEEEcC
Confidence            7889999999999832              1234455556677766 566655433

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=98.30  E-value=3.3e-07  Score=97.34  Aligned_cols=104  Identities=12%  Similarity=0.063  Sum_probs=72.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||+|.||.++|..+...|++|++||+++...+.+.+           .|             +...+++ +.+++
T Consensus       165 ktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~l~ell~~  220 (351)
T 3jtm_A          165 KTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKE-----------TG-------------AKFVEDLNEMLPK  220 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHH-----------HC-------------CEECSCHHHHGGG
T ss_pred             CEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHh-----------CC-------------CeEcCCHHHHHhc
Confidence            58999999999999999999999999999998644332211           11             2223344 56889


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhcccC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS  436 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~  436 (725)
                      ||+|+.++|-..+...-+-.+..+.++++++|+..+.+-.  ...+.+.+.
T Consensus       221 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~  271 (351)
T 3jtm_A          221 CDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVE  271 (351)
T ss_dssp             CSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             CCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHH
Confidence            9999999996555444344566777899999875443332  334444443

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=98.30  E-value=6.2e-07  Score=94.37  Aligned_cols=103  Identities=19%  Similarity=0.236  Sum_probs=71.6

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcc
Q 004891          306 RGVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (725)
Q Consensus       306 ~~~~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (725)
                      ...+||+|||+|.||.++|..++..|+  +|+++|+++++++.....+.+...    -.         ....+..+++++
T Consensus        17 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~----~~---------~~~~i~~~~d~~   83 (331)
T 4aj2_A           17 VPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSL----FL---------KTPKIVSSKDYS   83 (331)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGG----GC---------SCCEEEECSSGG
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhh----cc---------CCCeEEEcCCHH
Confidence            356899999999999999999999998  899999998876654333322110    00         012344567888


Q ss_pred             cccCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEec
Q 004891          384 EFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATN  422 (725)
Q Consensus       384 ~l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~  422 (725)
                      ++++||+||.+..-              +..+.+++.+.+.+++ |+++++..
T Consensus        84 ~~~~aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~-p~a~vlvv  135 (331)
T 4aj2_A           84 VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYS-PQCKLLIV  135 (331)
T ss_dssp             GGTTEEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEEC
T ss_pred             HhCCCCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe
Confidence            99999999998621              2345566667788885 55655543

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=98.29  E-value=7.6e-07  Score=97.30  Aligned_cols=73  Identities=22%  Similarity=0.262  Sum_probs=55.5

Q ss_pred             cceEEEEcCCCCc--HHHHHHHHH----CCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccC
Q 004891          308 VRKVAVIGGGLMG--SGIATAHIL----NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (725)
Q Consensus       308 ~~kIaVIG~G~mG--~~iA~~l~~----~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (725)
                      ..||+|||+|.||  .+++..++.    .| +|++||++++.+++... +.   + ....          ...+++.++|
T Consensus         5 ~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~-~~---~-~l~~----------~~~~I~~TtD   68 (450)
T 3fef_A            5 QIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEV-IG---N-HSGN----------GRWRYEAVST   68 (450)
T ss_dssp             CEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHH-HH---T-TSTT----------SCEEEEEESS
T ss_pred             CCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHH-HH---H-HHhc----------cCCeEEEECC
Confidence            3699999999985  799988886    57 99999999998876532 11   1 1111          2246788888


Q ss_pred             c-ccccCCCEEEEecc
Q 004891          382 Y-SEFKDVDMVIEAVI  396 (725)
Q Consensus       382 ~-~~l~~aDlVIeavp  396 (725)
                      + +++++||+||++++
T Consensus        69 ~~eAl~dADfVI~air   84 (450)
T 3fef_A           69 LKKALSAADIVIISIL   84 (450)
T ss_dssp             HHHHHTTCSEEEECCC
T ss_pred             HHHHhcCCCEEEeccc
Confidence            8 67899999999995

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=98.29  E-value=7.6e-07  Score=94.68  Aligned_cols=114  Identities=11%  Similarity=0.068  Sum_probs=75.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|||||+|.||.++|..+...|++|++||++... +.+.           +.|             +....++ +.+++
T Consensus       161 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~~~l~ell~~  215 (352)
T 3gg9_A          161 QTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSK-ERAR-----------ADG-------------FAVAESKDALFEQ  215 (352)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHH-HHHH-----------HTT-------------CEECSSHHHHHHH
T ss_pred             CEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCH-HHHH-----------hcC-------------ceEeCCHHHHHhh
Confidence            68999999999999999999999999999998633 2111           111             2223344 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhcccC-CCCcEEEEecC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS-SQDRIIGAHFF  447 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~-~~~r~ig~h~~  447 (725)
                      ||+|+.++|-..+...-+-.+..+.++++++++..+.+-.  ...+.+.+. ..-...++..|
T Consensus       216 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~  278 (352)
T 3gg9_A          216 SDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVF  278 (352)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCC
T ss_pred             CCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEeccc
Confidence            9999999997665544444566778899999875443322  234444443 22233455443

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=98.29  E-value=2.1e-06  Score=94.68  Aligned_cols=100  Identities=18%  Similarity=0.204  Sum_probs=69.5

Q ss_pred             ceEEEEcCCCC-cHHHHHHHHHC-----CCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc
Q 004891          309 RKVAVIGGGLM-GSGIATAHILN-----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (725)
Q Consensus       309 ~kIaVIG~G~m-G~~iA~~l~~~-----G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (725)
                      +||+|||+|.+ |.++|..|++.     +.+|++||+++++++...+.....+..   .+         ...++..++|+
T Consensus        29 ~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~---~~---------~~~~I~~t~D~   96 (472)
T 1u8x_X           29 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIRE---KA---------PDIEFAATTDP   96 (472)
T ss_dssp             EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHH---HC---------TTSEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhcc---CC---------CCCEEEEECCH
Confidence            59999999998 55578788887     668999999999877753222211111   11         11356677787


Q ss_pred             -ccccCCCEEEEeccCC----------------------------------hHHHHHHHHHHHHhCCCCeEEEe
Q 004891          383 -SEFKDVDMVIEAVIES----------------------------------VPLKQKIFSELEKACPPHCILAT  421 (725)
Q Consensus       383 -~~l~~aDlVIeavpe~----------------------------------~~~k~~v~~~l~~~~~~~~ii~s  421 (725)
                       +++++||+||.++|-.                                  ..+..++.+++.+++ |+++++.
T Consensus        97 ~eal~~AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~-P~A~ii~  169 (472)
T 1u8x_X           97 EEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYS-PDAWMLN  169 (472)
T ss_dssp             HHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEE
T ss_pred             HHHHcCCCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHC-CCeEEEE
Confidence             7899999999999741                                  124567777888887 5666653

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=98.28  E-value=1.1e-06  Score=91.58  Aligned_cols=109  Identities=11%  Similarity=0.021  Sum_probs=74.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||+|.||.++|..+...|++|++||++++  +.               +             .....++ +.+++
T Consensus       125 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~--~~---------------~-------------~~~~~~l~ell~~  174 (303)
T 1qp8_A          125 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK--EG---------------P-------------WRFTNSLEEALRE  174 (303)
T ss_dssp             CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC--CS---------------S-------------SCCBSCSHHHHTT
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc--cc---------------C-------------cccCCCHHHHHhh
Confidence            6899999999999999999999999999999864  10               1             0112334 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhcccC-CCCcEEEEecC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFF  447 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~-~~~r~ig~h~~  447 (725)
                      ||+|+.++|...+.+.-+-++..+.++++++++..+++-.+.  .+.+.+. ..-.-.+...|
T Consensus       175 aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~  237 (303)
T 1qp8_A          175 ARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVW  237 (303)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCC
T ss_pred             CCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccC
Confidence            999999999765543333246677889999987544443332  3444443 22234566666

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=98.26  E-value=2.5e-07  Score=97.16  Aligned_cols=102  Identities=13%  Similarity=0.114  Sum_probs=70.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||+|.||.++|+.+...|++|++||++++... +.           +.|             +.. .++ +.+++
T Consensus       143 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~-----------~~g-------------~~~-~~l~ell~~  196 (313)
T 2ekl_A          143 KTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREK-AE-----------KIN-------------AKA-VSLEELLKN  196 (313)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHHH-HH-----------HTT-------------CEE-CCHHHHHHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchhH-HH-----------hcC-------------cee-cCHHHHHhh
Confidence            6899999999999999999999999999999986531 11           111             111 133 55788


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhcccC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS  436 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~  436 (725)
                      ||+|+.++|...+...-+-++..+.++++++++..+++-.+.  .+.+.+.
T Consensus       197 aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~  247 (313)
T 2ekl_A          197 SDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIK  247 (313)
T ss_dssp             CSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHH
T ss_pred             CCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHH
Confidence            999999999655432222144556789999887655543333  4455443

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1

Probab=98.25  E-value=3.5e-06  Score=85.43  Aligned_cols=136  Identities=16%  Similarity=0.206  Sum_probs=95.4

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEE--cCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEE
Q 004891           27 ALAIPIVAGLKDKFEEATSRDDVKAIVLT--GNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (725)
Q Consensus        27 al~~~~~~~l~~~l~~~~~~~~v~~vVl~--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (725)
                      .++..+.+.+.+.|..++.++..+.|+|.  +-|+      ++.                ....++ +.|...++||++.
T Consensus        90 ~I~d~~a~~iiaqL~~l~~ed~~k~I~L~INSPGG------sV~----------------ag~aIy-d~I~~~k~pV~t~  146 (277)
T 1tg6_A           90 PIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGG------VVT----------------AGLAIY-DTMQYILNPICTW  146 (277)
T ss_dssp             SBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCB------CHH----------------HHHHHH-HHHHHSCSCEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC------CHH----------------HHHHHH-HHHHhcCCCEEEE
Confidence            48888999999999988765556777763  4332      221                122445 6688899999999


Q ss_pred             EcccccchhhHHhhhcCE--EEeeCCceEeCcccccCCCCCchhhc-----------------hHhhh--hCHHHHHHHH
Q 004891          105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQ-----------------RLPRL--VGLSKAIEMM  163 (725)
Q Consensus       105 v~G~a~GgG~~lalacD~--~ia~~~a~~~~pe~~~Gl~p~~g~~~-----------------~l~r~--vG~~~a~~l~  163 (725)
                      +.|.|..+|.-|+++||.  |+|.+++.++.....-|. -+. ...                 .+.+.  .......+++
T Consensus       147 v~G~AASaG~~Ia~Agd~gkr~a~P~S~ImihqP~~g~-~G~-a~Di~~~a~ei~~~~~~~~~i~a~~tG~~~e~i~~~~  224 (277)
T 1tg6_A          147 CVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGA-RGQ-ATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAM  224 (277)
T ss_dssp             EEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCC-CSS-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             EccEeHHHHHHHHHCCCcCCEEEecCCEEEEecccccc-cCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            999999999999999999  999999998876543322 110 000                 01111  1234555566


Q ss_pred             HcCCCCCHHHHHHcCCcceecCcc
Q 004891          164 LLSKSITSEEGWKLGLIDAVVTSE  187 (725)
Q Consensus       164 l~g~~~~a~eA~~~Glv~~vv~~~  187 (725)
                      -.+..++++||++.||||+|....
T Consensus       225 drd~~lta~EAle~GLID~I~~~~  248 (277)
T 1tg6_A          225 ERDRYMSPMEAQEFGILDKVLVHP  248 (277)
T ss_dssp             SSCEEECHHHHHHHTSCSEECSSC
T ss_pred             hcCcccCHHHHHHCCCCCEecCcc
Confidence            566778999999999999998543

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=98.23  E-value=1.4e-06  Score=94.07  Aligned_cols=100  Identities=16%  Similarity=0.141  Sum_probs=68.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|||||+|.||+++|..+...|++|++||+++...                .            .......++ +.+++
T Consensus       157 ktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~----------------~------------~~~~~~~sl~ell~~  208 (416)
T 3k5p_A          157 KTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQ----------------Y------------GNVKPAASLDELLKT  208 (416)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCC----------------B------------TTBEECSSHHHHHHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhc----------------c------------cCcEecCCHHHHHhh
Confidence            689999999999999999999999999999874320                0            011223344 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhcccC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS  436 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~  436 (725)
                      ||+|+.++|...+.+.-+-++....++++++++..+.+-.  ...+.+.+.
T Consensus       209 aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~  259 (416)
T 3k5p_A          209 SDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQ  259 (416)
T ss_dssp             CSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHH
Confidence            9999999997665544333566777899999875444433  335555553

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=98.22  E-value=8.6e-06  Score=89.34  Aligned_cols=201  Identities=17%  Similarity=0.191  Sum_probs=144.7

Q ss_pred             CCcEEEEEe-cCcEEEEEeCCCC---C-----------CCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcCCCCCcCCCC
Q 004891            3 APRVTMEVG-NDGVAIITLINPP---V-----------NALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGNGGRFSGGFD   66 (725)
Q Consensus         3 ~~~i~~~~~-~~~v~~i~l~~p~---~-----------Nal~~~~~~~l~~~l~~~~-~~~~v~~vVl~g~g~~F~aG~D   66 (725)
                      |..+...++ ..+++.++...|.   .           +.....|-.||.+++-.+. +++++...++...|..      
T Consensus       265 y~~~~~ai~ra~r~a~~~~~g~~~a~~~~ld~i~aa~~~~~~l~~~~el~~All~l~~ne~~~~~~~~~t~g~~------  338 (556)
T 2w3p_A          265 YKTLDVTIDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAVGTWVFRTEGDA------  338 (556)
T ss_dssp             ETTEEEEEETTTTEEEEEEECCSSCCCCSHHHHHHHGGGSHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEESCH------
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHhhhcchhhhhhhHHHHHHHhhhhccHHHhHhhhhccCCH------
Confidence            344555553 4568888887762   1           3334568889977776665 5678999998776642      


Q ss_pred             chhhhh-------ccCCCcccccchhHHHHHHHHHhhCCCcEEEEE-cccccchh-hHHhhhcCEEEeeC-------Cce
Q 004891           67 INVFQK-------VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV-EGLALGGG-LELAMGCHARIAAP-------KTQ  130 (725)
Q Consensus        67 l~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav-~G~a~GgG-~~lalacD~~ia~~-------~a~  130 (725)
                       ..+..       ..+..-+.+...++.+.+ .+|--...-++|.| .|.|+.|- +||+++||..++-+       .+.
T Consensus       339 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~r~d~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~  416 (556)
T 2w3p_A          339 -RHLLAADASLMQHKDHWFVRETIGLLRRTL-ARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPA  416 (556)
T ss_dssp             -HHHHHHHHHHHHTTTSHHHHHHHHHHHHHH-HHHHTCSSEEEEEECTTCCEEGGGHHHHHTSSEEEECCCTTCTTTSCC
T ss_pred             -HHHhhhHHHHHhccchHHHHHHHHHHHHHH-HHhcccchhheeeecCCcchHHHHHHHHHHhhhhhhhcCCCCCCCCce
Confidence             22211       001111223334455555 55777778889988 68998775 69999999999962       478


Q ss_pred             EeCcccccCCCCCchhhchHhhhh-CHHHHHHH--HHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchh
Q 004891          131 LGLPELTLGVIPGFGGTQRLPRLV-GLSKAIEM--MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPW  207 (725)
Q Consensus       131 ~~~pe~~~Gl~p~~g~~~~l~r~v-G~~~a~~l--~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~  207 (725)
                      +.+.+.++|..|-..+..||.++. |.....+.  ...|+++++++|.++|||+...++-+.++++.-..++-++.||.+
T Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (556)
T 2w3p_A          417 ITLSEVNFGLYPMVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTASPDDIDWADEIRIALEERAAMSPDA  496 (556)
T ss_dssp             EECCGGGGTTSCCTTSSCHHHHHTTTCHHHHHHHHTTTTSCBCHHHHHHTTSSSBCCCTTTHHHHHHHHHHHHHHSCHHH
T ss_pred             eEeeccccCcccCCCchhHHHHHhcCCcchHHHHHHHhCCCCCHHHHHhcCCeecCcccCChHHHHHHHHHHHhccCcch
Confidence            999999999999988888887764 44433332  235999999999999999999988899999999999999999987


Q ss_pred             hhhh
Q 004891          208 IRSL  211 (725)
Q Consensus       208 ~~~~  211 (725)
                      +..+
T Consensus       497 ~~~~  500 (556)
T 2w3p_A          497 LTGL  500 (556)
T ss_dssp             HHHH
T ss_pred             hccc
Confidence            7654

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=98.20  E-value=7.5e-07  Score=96.51  Aligned_cols=100  Identities=15%  Similarity=0.180  Sum_probs=70.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|||||+|.||+.+|..+...|++|++||+++...                .            +......++ +.+++
T Consensus       146 ktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----------------~------------~~~~~~~~l~ell~~  197 (404)
T 1sc6_A          146 KKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP----------------L------------GNATQVQHLSDLLNM  197 (404)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC----------------C------------TTCEECSCHHHHHHH
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhc----------------c------------CCceecCCHHHHHhc
Confidence            589999999999999999999999999999975320                0            111223344 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhcccC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS  436 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~  436 (725)
                      ||+|+.++|...+.+.-+-++..+.++++++++..+.+-.+.  .+.+.+.
T Consensus       198 aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~  248 (404)
T 1sc6_A          198 SDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALA  248 (404)
T ss_dssp             CSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHH
T ss_pred             CCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHH
Confidence            999999999776654433355667789999987544443333  4455443

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=98.20  E-value=1.4e-06  Score=91.23  Aligned_cols=109  Identities=16%  Similarity=0.098  Sum_probs=73.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||+|.||.++|..+...|++|++||++++..+                              +. ..++ +.+++
T Consensus       145 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~------------------------------~~-~~~l~ell~~  193 (311)
T 2cuk_A          145 LTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP------------------------------YP-FLSLEELLKE  193 (311)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS------------------------------SC-BCCHHHHHHH
T ss_pred             CEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc------------------------------cc-cCCHHHHHhh
Confidence            6899999999999999999999999999999875411                              11 1233 45788


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhcccCCCCcEEEEecCC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFS  448 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~~~~r~ig~h~~~  448 (725)
                      ||+|+.++|...+...-+-++..+.++++++++..+++-.+.  .+.+.+...-.-.++..|.
T Consensus       194 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~g~i~ga~lDv~~  256 (311)
T 2cuk_A          194 ADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALRGHLFGAGLDVTD  256 (311)
T ss_dssp             CSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHTTTSSEEEESSCS
T ss_pred             CCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHhCcCCEEEEeeCC
Confidence            999999999665433322134556789999887555443332  4555554212234555553

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=98.20  E-value=2.6e-06  Score=90.69  Aligned_cols=137  Identities=8%  Similarity=0.047  Sum_probs=84.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|||||+|.||.++|..+...|++|++||++... +.+.           +.|             +. ..++ +.+++
T Consensus       177 ktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~-~~~l~ell~~  230 (365)
T 4hy3_A          177 SEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPR-SMLE-----------ENG-------------VE-PASLEDVLTK  230 (365)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCH-HHHH-----------HTT-------------CE-ECCHHHHHHS
T ss_pred             CEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCH-HHHh-----------hcC-------------ee-eCCHHHHHhc
Confidence            68999999999999999999999999999998532 1111           111             11 1234 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhcccCCCCcEEEEecCC--C------CCCCCeee
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFS--P------AHVMPLLE  457 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~~~r~ig~h~~~--p------~~~~~lve  457 (725)
                      ||+|+.++|-..+...-+-.+..+.++++++++..+.+  +....+.+.+....-..++..|.  |      .+..+-+-
T Consensus       231 aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~aaLDV~~~EPl~~~~pL~~~~nvi  310 (365)
T 4hy3_A          231 SDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIVAASDVYPEEPLPLDHPVRSLKGFI  310 (365)
T ss_dssp             CSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSEEEESCCSSSSCCTTCGGGTCTTEE
T ss_pred             CCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCceEEeeCCCCCCCCCCChhhcCCCEE
Confidence            99999999977665544446677889999998744433  23335555544322124554442  2      12234466


Q ss_pred             EecCCC-CCHHHHHH
Q 004891          458 IVRTER-TSAQVILD  471 (725)
Q Consensus       458 ii~~~~-t~~e~~~~  471 (725)
                      ++|+-. .+.++.+.
T Consensus       311 lTPHia~~t~e~~~~  325 (365)
T 4hy3_A          311 RSAHRAGALDSAFKK  325 (365)
T ss_dssp             ECCSCSSCCHHHHHH
T ss_pred             ECCccccCHHHHHHH
Confidence            666433 24444443

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=98.19  E-value=9.5e-07  Score=95.02  Aligned_cols=103  Identities=9%  Similarity=-0.016  Sum_probs=70.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||+|.||.++|+.+...|++|++||++++..+...           +.|             +....++ +.+++
T Consensus       192 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~-----------~~G-------------~~~~~~l~ell~~  247 (393)
T 2nac_A          192 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEK-----------ELN-------------LTWHATREDMYPV  247 (393)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHH-----------HHT-------------CEECSSHHHHGGG
T ss_pred             CEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHh-----------hcC-------------ceecCCHHHHHhc
Confidence            5899999999999999999999999999999864432211           011             1112233 56789


Q ss_pred             CCEEEEeccCChHHHHHHH-HHHHHhCCCCeEEEecCCCCChH--HHhcccC
Q 004891          388 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTIDLN--IVGEKTS  436 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~-~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~  436 (725)
                      ||+|+.++|-..+.. .++ ++..+.++++++|+..+.+-.+.  .+.+.+.
T Consensus       248 aDvV~l~~Plt~~t~-~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~  298 (393)
T 2nac_A          248 CDVVTLNCPLHPETE-HMINDETLKLFKRGAYIVNTARGKLCDRDAVARALE  298 (393)
T ss_dssp             CSEEEECSCCCTTTT-TCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             CCEEEEecCCchHHH-HHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHH
Confidence            999999999655543 333 45667789999887555443333  4555553

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=98.18  E-value=5e-07  Score=94.81  Aligned_cols=127  Identities=13%  Similarity=0.108  Sum_probs=80.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|||||+|.||.++|..+...|++|++||++++..+..                          .......++ +.+++
T Consensus       141 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--------------------------~~~~~~~~l~ell~~  194 (324)
T 3hg7_A          141 RTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGF--------------------------DQVYQLPALNKMLAQ  194 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTC--------------------------SEEECGGGHHHHHHT
T ss_pred             ceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhh--------------------------hcccccCCHHHHHhh
Confidence            689999999999999999999999999999986431110                          011112334 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhcccCC-CCcEEEEecCC--------CCCCCCee
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSS-QDRIIGAHFFS--------PAHVMPLL  456 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~~-~~r~ig~h~~~--------p~~~~~lv  456 (725)
                      ||+|+.++|-..+...-+-.+..+.++++++++..+.+-.+  ..+.+.+.. .-...++..|.        |.+..+-+
T Consensus       195 aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nv  274 (324)
T 3hg7_A          195 ADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNL  274 (324)
T ss_dssp             CSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTCTTE
T ss_pred             CCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEeccCCCCCCCCCChhhcCCCE
Confidence            99999999965554433334556678999998754444333  344554432 22334454442        22334456


Q ss_pred             eEecC
Q 004891          457 EIVRT  461 (725)
Q Consensus       457 eii~~  461 (725)
                      -++|+
T Consensus       275 ilTPH  279 (324)
T 3hg7_A          275 IITPH  279 (324)
T ss_dssp             EECCS
T ss_pred             EEeCC
Confidence            66664

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=98.16  E-value=7.7e-07  Score=94.19  Aligned_cols=102  Identities=15%  Similarity=0.055  Sum_probs=71.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|||||+|.||.++|..+...|++|++||+++...+..             .+             .....++ +.+++
T Consensus       174 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~-------------~g-------------~~~~~~l~ell~~  227 (345)
T 4g2n_A          174 RRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALE-------------EG-------------AIYHDTLDSLLGA  227 (345)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHH-------------TT-------------CEECSSHHHHHHT
T ss_pred             CEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhh-------------cC-------------CeEeCCHHHHHhh
Confidence            689999999999999999999999999999986432211             01             2223344 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC--ChHHHhcccC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTS  436 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~  436 (725)
                      ||+|+.++|-..+...-+-++..+.++++++++..+.+-  ....+.+.+.
T Consensus       228 sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~  278 (345)
T 4g2n_A          228 SDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALR  278 (345)
T ss_dssp             CSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             CCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHH
Confidence            999999999766654444356677789999987544332  2334444443

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1

Probab=98.15  E-value=3.3e-06  Score=82.15  Aligned_cols=137  Identities=20%  Similarity=0.199  Sum_probs=95.6

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEE
Q 004891           27 ALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (725)
Q Consensus        27 al~~~~~~~l~~~l~~~~~~~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (725)
                      .+++.+.+.+.+.|..++.++..+.|+|  .+.|      +++.                ....++ +.|..+++||++.
T Consensus        38 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~INSpG------G~v~----------------~~~~I~-~~i~~~~~~v~t~   94 (201)
T 3p2l_A           38 EVNDHSANLVIAQLLFLESEDPDKDIYFYINSPG------GMVT----------------AGMGVY-DTMQFIKPDVSTI   94 (201)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC------BCHH----------------HHHHHH-HHHHHSSSCEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC------CCHH----------------HHHHHH-HHHHHhCCCeEEE
Confidence            4889999999999999987666676666  3333      2221                122445 6688899999999


Q ss_pred             EcccccchhhHHhhhcCE--EEeeCCceEeCcccccCCCCCchhhc----------h--------Hhhhh--CHHHHHHH
Q 004891          105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQ----------R--------LPRLV--GLSKAIEM  162 (725)
Q Consensus       105 v~G~a~GgG~~lalacD~--~ia~~~a~~~~pe~~~Gl~p~~g~~~----------~--------l~r~v--G~~~a~~l  162 (725)
                      +.|.|.++|.-++++||.  |++.+++++......-|.   .|-..          .        +.+.-  ......++
T Consensus        95 ~~G~AaS~g~~i~~ag~~g~r~~~p~a~imiH~p~~~~---~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~e~i~~~  171 (201)
T 3p2l_A           95 CIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGF---RGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKD  171 (201)
T ss_dssp             EEEEEETHHHHHHHTSSTTCEEECTTCEEEECCCEEEE---EEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             EcCEehhHHHHHHHcCccCCEEEcCCCeEEEecccccc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence            999999999999999998  999999998776554221   11110          0        11111  23444455


Q ss_pred             HHcCCCCCHHHHHHcCCcceecCc-chH
Q 004891          163 MLLSKSITSEEGWKLGLIDAVVTS-EEL  189 (725)
Q Consensus       163 ~l~g~~~~a~eA~~~Glv~~vv~~-~~l  189 (725)
                      +-....++|+||++.||||+|++. ++|
T Consensus       172 ~~~~~~lta~EA~e~GliD~I~~~~~~l  199 (201)
T 3p2l_A          172 TDRDNFMMADEAKAYGLIDHVIESREAI  199 (201)
T ss_dssp             TSSCEEEEHHHHHHHTSCSEECCCSCC-
T ss_pred             hhcCeeecHHHHHHcCCccEecCCHHHh
Confidence            555566799999999999999854 444

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=98.13  E-value=1.2e-06  Score=92.44  Aligned_cols=101  Identities=9%  Similarity=0.013  Sum_probs=70.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||+|.||.++|+.+...|++|++||++++.. .+.           ..|             +.. .++ +.+++
T Consensus       166 ~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~-----------~~g-------------~~~-~~l~ell~~  219 (335)
T 2g76_A          166 KTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPE-VSA-----------SFG-------------VQQ-LPLEEIWPL  219 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCHH-HHH-----------HTT-------------CEE-CCHHHHGGG
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh-hhh-----------hcC-------------cee-CCHHHHHhc
Confidence            689999999999999999999999999999987542 111           111             111 233 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhccc
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKT  435 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~  435 (725)
                      ||+|+.++|...+.+.-+-++..+.++++++++..+++-.+.  .+.+.+
T Consensus       220 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL  269 (335)
T 2g76_A          220 CDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRAL  269 (335)
T ss_dssp             CSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHH
T ss_pred             CCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHH
Confidence            999999999766544333255677889999987555544333  444444

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=98.12  E-value=5.2e-06  Score=85.75  Aligned_cols=103  Identities=17%  Similarity=0.287  Sum_probs=69.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      +||+|||+|.+|.++|..|+..+.  +++++|++++.++--...+.+.... .  +         ....+..++++++++
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~-~--~---------~~~~i~~~~d~~~~~   68 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAG-I--D---------KYPKIVGGADYSLLK   68 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGG-G--T---------CCCEEEEESCGGGGT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhccccc-C--C---------CCCeEecCCCHHHhC
Confidence            589999999999999999998876  8999999987655332223221110 0  0         002344567889999


Q ss_pred             CCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891          387 DVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTS  424 (725)
Q Consensus       387 ~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS  424 (725)
                      +||+||.+.-              .+..+.+++..++.++++ +++++..|.
T Consensus        69 ~aDvVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p-~aivlvvsN  119 (294)
T 2x0j_A           69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAP-ESKILVVTN  119 (294)
T ss_dssp             TCSEEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTST-TCEEEECSS
T ss_pred             CCCEEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCC-ceEEEEecC
Confidence            9999998872              144456666677877765 555544433

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=98.11  E-value=1.2e-05  Score=84.39  Aligned_cols=109  Identities=20%  Similarity=0.268  Sum_probs=71.0

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l  385 (725)
                      .+||+|||+|.+|.+++..++..|+  +|+++|+++++++.....+.+.. ......           -.++ .++++++
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~-~~~~~~-----------~~v~-~~~~~a~   72 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHAT-PYSPTT-----------VRVK-AGEYSDC   72 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHG-GGSSSC-----------CEEE-ECCGGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhh-hhcCCC-----------eEEE-eCCHHHh
Confidence            3699999999999999999999885  89999999887664322222211 000000           0222 2456889


Q ss_pred             cCCCEEEEeccC--Ch------------HHHHHHHHHHHHhCCCCeEEEecCCCCChHHHh
Q 004891          386 KDVDMVIEAVIE--SV------------PLKQKIFSELEKACPPHCILATNTSTIDLNIVG  432 (725)
Q Consensus       386 ~~aDlVIeavpe--~~------------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~  432 (725)
                      ++||+||.+++-  +.            .+.+++...+.+++ |+++++..  +.|+..+.
T Consensus        73 ~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~--tNPv~~~t  130 (317)
T 3d0o_A           73 HDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASK-FDGIFLVA--TNPVDILA  130 (317)
T ss_dssp             TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTT-CCSEEEEC--SSSHHHHH
T ss_pred             CCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe--cCcHHHHH
Confidence            999999999842  21            45556666777775 56665542  35555444

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=98.11  E-value=4.9e-07  Score=95.45  Aligned_cols=102  Identities=17%  Similarity=0.115  Sum_probs=71.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||+|.||.++|+.+...|++|++||+++...+...+           .|             +... ++ +.+++
T Consensus       146 ~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~-~l~ell~~  200 (330)
T 4e5n_A          146 ATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQR-----------LG-------------LRQV-ACSELFAS  200 (330)
T ss_dssp             CEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHH-----------HT-------------EEEC-CHHHHHHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHh-----------cC-------------ceeC-CHHHHHhh
Confidence            68999999999999999999999999999998743222210           01             1112 33 56788


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhccc
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKT  435 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~  435 (725)
                      ||+|+.++|-..+...-+-++..+.++++++|+..+.+-.  ...+.+.+
T Consensus       201 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL  250 (330)
T 4e5n_A          201 SDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAAL  250 (330)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred             CCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHH
Confidence            9999999996665544444567788899999875444433  33444444

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=98.07  E-value=3.2e-06  Score=89.39  Aligned_cols=96  Identities=15%  Similarity=0.200  Sum_probs=69.0

Q ss_pred             CcceEEEEcC-CCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-
Q 004891          307 GVRKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (725)
Q Consensus       307 ~~~kIaVIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (725)
                      ..+||+|||+ |.+|+++|..++..|.  +|+++|+++++++.....+.+..        ..       ..++..++++ 
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~--------~~-------~~~i~~t~d~~   71 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCG--------FE-------GLNLTFTSDIK   71 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHC--------CT-------TCCCEEESCHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCc--------CC-------CCceEEcCCHH
Confidence            3579999998 9999999999999985  89999999987664333332210        10       1245566676 


Q ss_pred             ccccCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCe
Q 004891          383 SEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHC  417 (725)
Q Consensus       383 ~~l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~  417 (725)
                      +++++||+||.++.              .+..+.+++...+.++++...
T Consensus        72 ~al~dADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~  120 (343)
T 3fi9_A           72 EALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCK  120 (343)
T ss_dssp             HHHTTEEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred             HHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcE
Confidence            67999999999862              234566667777888875553

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=98.07  E-value=3.9e-07  Score=95.44  Aligned_cols=101  Identities=12%  Similarity=0.072  Sum_probs=70.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||+|.||.++|..+...|++|++||++++..+..                          .......++ +.+++
T Consensus       140 ~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--------------------------~~~~~~~~l~ell~~  193 (315)
T 3pp8_A          140 FSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGV--------------------------ESYVGREELRAFLNQ  193 (315)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTC--------------------------EEEESHHHHHHHHHT
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhh--------------------------hhhcccCCHHHHHhh
Confidence            689999999999999999999999999999987542110                          000001233 46789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC--ChHHHhccc
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKT  435 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~  435 (725)
                      ||+|+.++|-..+...-+-.+..+.++++++++..+.+-  ....+.+.+
T Consensus       194 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL  243 (315)
T 3pp8_A          194 TRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAAL  243 (315)
T ss_dssp             CSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred             CCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHH
Confidence            999999999666554433366777889999887544332  233454544

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=98.05  E-value=5.1e-06  Score=87.22  Aligned_cols=100  Identities=20%  Similarity=0.248  Sum_probs=67.5

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcc-cccCcc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK-GVLDYS  383 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~-~~~~~~  383 (725)
                      ..+||+|||+|.||.++|..|+..|+  +|+++|+++++++.....+.+...               .+..+. .+.+++
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~---------------~~~~~~i~~~~~~   72 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALP---------------FTSPKKIYSAEYS   72 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGG---------------GSCCCEEEECCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhh---------------hcCCcEEEECcHH
Confidence            45799999999999999999999988  899999998876644322222110               001222 244578


Q ss_pred             cccCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEec
Q 004891          384 EFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATN  422 (725)
Q Consensus       384 ~l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~  422 (725)
                      ++++||+||.+..-              +..+.+++.+.+.+++ |+++++..
T Consensus        73 a~~~aDiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~-p~a~ilvv  124 (326)
T 3vku_A           73 DAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSG-FNGIFLVA  124 (326)
T ss_dssp             GGTTCSEEEECCCCC----------------CHHHHHHHHHTTT-CCSEEEEC
T ss_pred             HhcCCCEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEc
Confidence            99999999998631              2334556666777776 46665543

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=98.05  E-value=1.4e-06  Score=92.44  Aligned_cols=102  Identities=14%  Similarity=0.029  Sum_probs=69.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||+|.||..+|..+...|++|++||++++... ..           ..|             +....++ +.+++
T Consensus       169 ~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~-----------~~g-------------~~~~~~l~ell~~  223 (347)
T 1mx3_A          169 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGV-ER-----------ALG-------------LQRVSTLQDLLFH  223 (347)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTH-HH-----------HHT-------------CEECSSHHHHHHH
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhh-Hh-----------hcC-------------CeecCCHHHHHhc
Confidence            5899999999999999999999999999999764311 00           001             1112233 55788


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhccc
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKT  435 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~  435 (725)
                      ||+|+.++|...+.+.-+-++..+.++++++++..+++-.+  ..+.+.+
T Consensus       224 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL  273 (347)
T 1mx3_A          224 SDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQAL  273 (347)
T ss_dssp             CSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHH
T ss_pred             CCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHH
Confidence            99999999965544333325566778999988755554333  3444444

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=98.04  E-value=1.3e-06  Score=93.45  Aligned_cols=104  Identities=15%  Similarity=0.066  Sum_probs=71.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCc-EEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~-V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      ++|+|||+|.||.++|..+...|++ |++||+++...+...           +.|             +....++ +.++
T Consensus       165 ~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~l~ell~  220 (364)
T 2j6i_A          165 KTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEE-----------KVG-------------ARRVENIEELVA  220 (364)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHH-----------HTT-------------EEECSSHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHH-----------hcC-------------cEecCCHHHHHh
Confidence            5899999999999999999999997 999999875433221           111             1222344 5578


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC--ChHHHhcccC
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTS  436 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~  436 (725)
                      +||+|+.++|...+...-+-++..+.++++++|+..+.+-  ....+.+.+.
T Consensus       221 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~  272 (364)
T 2j6i_A          221 QADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALE  272 (364)
T ss_dssp             TCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             cCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHH
Confidence            9999999999765543333345667789999887544442  2334555443

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=98.02  E-value=3.8e-06  Score=88.32  Aligned_cols=119  Identities=23%  Similarity=0.327  Sum_probs=72.1

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCC-CCHHHHHHhhcCcccccCccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDYSE  384 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~  384 (725)
                      .+||+|||+|.+|.++|..++..|+  +|+++|+++++++.....+        .... ..      .--+++. +++++
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl--------~~~~~~~------~~~~i~~-~~~~a   71 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDI--------NHGLPFM------GQMSLYA-GDYSD   71 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHH--------TTSCCCT------TCEEEC---CGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHH--------HHhHHhc------CCeEEEE-CCHHH
Confidence            4689999999999999999999998  9999999987765321111        1110 00      0012332 45688


Q ss_pred             ccCCCEEEEeccCCh--------------HHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhccc----C-CCCcEEEE
Q 004891          385 FKDVDMVIEAVIESV--------------PLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKT----S-SQDRIIGA  444 (725)
Q Consensus       385 l~~aDlVIeavpe~~--------------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~----~-~~~r~ig~  444 (725)
                      +++||+||.+++...              .+.+++.+.+.+++ |+++++..  +.|+..+....    . .+.|++|+
T Consensus        72 ~~~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~--tNPv~~~~~~~~k~s~~p~~rviG~  147 (318)
T 1y6j_A           72 VKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGVILVV--SNPVDIITYMIQKWSGLPVGKVIGS  147 (318)
T ss_dssp             GTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEEC--SSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             hCCCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEEe--cCcHHHHHHHHHHHcCCCHHHEecc
Confidence            999999999986322              22456667788885 56665542  45555443322    2 23466664

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=98.02  E-value=2.3e-06  Score=90.50  Aligned_cols=101  Identities=14%  Similarity=-0.009  Sum_probs=69.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||+|.||.++|+.+...|++|++||++++..  ..+        .                 +....++ +.+++
T Consensus       147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~~~--------~-----------------~~~~~~l~ell~~  199 (333)
T 1j4a_A          147 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--LEK--------K-----------------GYYVDSLDDLYKQ  199 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--HHH--------T-----------------TCBCSCHHHHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--HHh--------h-----------------CeecCCHHHHHhh
Confidence            689999999999999999999999999999987653  100        0                 1112233 45788


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhcccC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS  436 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~  436 (725)
                      ||+|+.++|...+...-+-++..+.++++++++..+++-.  ...+.+.+.
T Consensus       200 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~  250 (333)
T 1j4a_A          200 ADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLD  250 (333)
T ss_dssp             CSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             CCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence            9999999997665433222455667899998875554432  334545443

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.01  E-value=4.2e-06  Score=87.83  Aligned_cols=89  Identities=11%  Similarity=0.106  Sum_probs=63.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC-CC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILN-NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~-G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      ++|+|||+|.||..++..|++. |+ +|++||++++++++..+.+          +.           .+...+++ +.+
T Consensus       136 ~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~----------~~-----------~~~~~~~~~e~v  194 (312)
T 2i99_A          136 EVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTV----------QG-----------EVRVCSSVQEAV  194 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHS----------SS-----------CCEECSSHHHHH
T ss_pred             cEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHh----------hC-----------CeEEeCCHHHHH
Confidence            5799999999999999999886 77 8999999999877653210          10           13334455 567


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  424 (725)
                      ++||+||.|+|...    .++..  +.++++++|++.++
T Consensus       195 ~~aDiVi~atp~~~----~v~~~--~~l~~g~~vi~~g~  227 (312)
T 2i99_A          195 AGADVIITVTLATE----PILFG--EWVKPGAHINAVGA  227 (312)
T ss_dssp             TTCSEEEECCCCSS----CCBCG--GGSCTTCEEEECCC
T ss_pred             hcCCEEEEEeCCCC----cccCH--HHcCCCcEEEeCCC
Confidence            89999999998532    23322  46788888876433

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.00  E-value=2.3e-05  Score=71.75  Aligned_cols=104  Identities=14%  Similarity=0.065  Sum_probs=64.8

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCC-HHHHHHhhcCcccccCcccc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT-QDKANNALKMLKGVLDYSEF  385 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~l  385 (725)
                      .+++|.|+|+|.+|..+|..|.+.|++|+++|++++.++.+.+.     ....-.+..+ .+....           ..+
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~-----~~~~~~gd~~~~~~l~~-----------~~~   68 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE-----GFDAVIADPTDESFYRS-----------LDL   68 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT-----TCEEEECCTTCHHHHHH-----------SCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC-----CCcEEECCCCCHHHHHh-----------CCc
Confidence            35789999999999999999999999999999999887665320     0000011111 110000           135


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL  428 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~  428 (725)
                      .++|+||.+++ +.+....+...+.+.. ...+++...+....
T Consensus        69 ~~~d~vi~~~~-~~~~n~~~~~~a~~~~-~~~iia~~~~~~~~  109 (141)
T 3llv_A           69 EGVSAVLITGS-DDEFNLKILKALRSVS-DVYAIVRVSSPKKK  109 (141)
T ss_dssp             TTCSEEEECCS-CHHHHHHHHHHHHHHC-CCCEEEEESCGGGH
T ss_pred             ccCCEEEEecC-CHHHHHHHHHHHHHhC-CceEEEEEcChhHH
Confidence            78999999998 4444444444444444 55666655444333

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=98.00  E-value=1.8e-05  Score=86.92  Aligned_cols=100  Identities=22%  Similarity=0.252  Sum_probs=69.1

Q ss_pred             ceEEEEcCCCC-cHHHHHHHHHC-----CCcEEEEeCCh--HHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccccc
Q 004891          309 RKVAVIGGGLM-GSGIATAHILN-----NIYVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  380 (725)
Q Consensus       309 ~kIaVIG~G~m-G~~iA~~l~~~-----G~~V~~~d~~~--e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~  380 (725)
                      +||+|||+|.+ |.+++..|++.     +.+|++||+++  ++++...+.....++   ..+.         ...+..++
T Consensus         8 ~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~---~~~~---------~~~i~~t~   75 (450)
T 1s6y_A            8 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVE---KAGV---------PIEIHLTL   75 (450)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHH---HTTC---------CCEEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHh---hcCC---------CcEEEEeC
Confidence            59999999998 77778788873     56899999999  887764322211111   1110         12466677


Q ss_pred             Cc-ccccCCCEEEEeccCC----------------------------------hHHHHHHHHHHHHhCCCCeEEEe
Q 004891          381 DY-SEFKDVDMVIEAVIES----------------------------------VPLKQKIFSELEKACPPHCILAT  421 (725)
Q Consensus       381 ~~-~~l~~aDlVIeavpe~----------------------------------~~~k~~v~~~l~~~~~~~~ii~s  421 (725)
                      |+ +++++||+||.+++-.                                  ..+..++.+++.+++ |+++++.
T Consensus        76 D~~eal~gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~-P~a~ii~  150 (450)
T 1s6y_A           76 DRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELC-PDAWLIN  150 (450)
T ss_dssp             CHHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEE
T ss_pred             CHHHHhCCCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHC-CCeEEEE
Confidence            87 7899999999999731                                  134567777888887 5666653

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=97.99  E-value=1.2e-06  Score=92.74  Aligned_cols=111  Identities=17%  Similarity=0.099  Sum_probs=74.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||+|.||.++|..+...|++|++||++++..              .+.             ..... ++ +.+++
T Consensus       149 ktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--------------~~~-------------~~~~~-~l~ell~~  200 (343)
T 2yq5_A          149 LTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPE--------------FEP-------------FLTYT-DFDTVLKE  200 (343)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGG--------------GTT-------------TCEEC-CHHHHHHH
T ss_pred             CeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhh--------------hhc-------------ccccc-CHHHHHhc
Confidence            689999999999999999999999999999987530              000             11112 34 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC--ChHHHhcccC-CCCcEEEEecC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTS-SQDRIIGAHFF  447 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~-~~~r~ig~h~~  447 (725)
                      ||+|+.++|-..+...-+-.+..+.++++++++..+.+-  ....+.+.+. ..-...++..|
T Consensus       201 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~  263 (343)
T 2yq5_A          201 ADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTL  263 (343)
T ss_dssp             CSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEESCC
T ss_pred             CCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEeccc
Confidence            999999999665544444456667789999987544432  2334444443 22233555544

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.98  E-value=4.3e-05  Score=69.38  Aligned_cols=97  Identities=19%  Similarity=0.182  Sum_probs=61.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCC-CHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL-TQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      ++|.|+|+|.||..+|..|.+.|++|+++|++++.++...+.    ..-..-.+.. +....           ....+.+
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~----~~~~~~~~d~~~~~~l-----------~~~~~~~   69 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE----IDALVINGDCTKIKTL-----------EDAGIED   69 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----CSSEEEESCTTSHHHH-----------HHTTTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh----cCcEEEEcCCCCHHHH-----------HHcCccc
Confidence            589999999999999999999999999999999876554210    0000000101 00000           0023678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEec
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATN  422 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~  422 (725)
                      +|+||.|+|.+.  ....+..+.+.+.++.+++..
T Consensus        70 ~d~vi~~~~~~~--~~~~~~~~~~~~~~~~ii~~~  102 (140)
T 1lss_A           70 ADMYIAVTGKEE--VNLMSSLLAKSYGINKTIARI  102 (140)
T ss_dssp             CSEEEECCSCHH--HHHHHHHHHHHTTCCCEEEEC
T ss_pred             CCEEEEeeCCch--HHHHHHHHHHHcCCCEEEEEe
Confidence            999999998542  223344455556777777643

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=97.95  E-value=3.4e-05  Score=86.63  Aligned_cols=160  Identities=14%  Similarity=0.041  Sum_probs=106.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEE
Q 004891           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (725)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (725)
                      .-++.+...+.+..+++.+.+. .+-+|.|.-     |+|+.+.+-......  ...+.... ..+ ..+....+|+|++
T Consensus       118 gGs~g~~~~~Ki~r~~e~A~~~-~lPvI~l~d-----SgGArlqe~~~~l~~--~~~~g~i~-~~~-~~ls~~giP~Isv  187 (587)
T 1pix_A          118 AGAWVPGQAECLLRASDTAKTL-HVPLVYVLN-----CSGVKFDEQEKVYPN--RRGGGTPF-FRN-AELNQLGIPVIVG  187 (587)
T ss_dssp             TTEECTTHHHHHHHHHHHHHHH-TCCEEEEEC-----CCEECGGGHHHHSSS--TTSTTHHH-HHH-HHHHHTTCCEEEE
T ss_pred             cCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEe-----CCCCCccccchhccc--cccHHHHH-HHH-HHHhCCCCCEEEE
Confidence            4688899999999999988865 456777764     456666553321110  01122222 223 3477889999999


Q ss_pred             EcccccchhhHHhhhcCEEEeeCC-ceEeCcccccCCCCCchhhchHhhhhCHHHHHHHH-HcCCCCCHHH-------HH
Q 004891          105 VEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM-LLSKSITSEE-------GW  175 (725)
Q Consensus       105 v~G~a~GgG~~lalacD~~ia~~~-a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~-l~g~~~~a~e-------A~  175 (725)
                      |.|.|.|||... ..||++|+++. +.+++.-..  ++-    ...---.++..+|.+++ .+|+.+++++       +.
T Consensus       188 v~G~~~GGga~~-a~~d~vim~e~~a~i~~~GP~--vi~----~~~~~~~~d~~~A~el~~~tge~v~~e~lgga~~h~~  260 (587)
T 1pix_A          188 IYGTNPAGGGYH-SISPTVIIAHEKANMAVGGAG--IMG----GMNPKGHVDLEYANEIADMVDRTGKTEPPGAVDIHYT  260 (587)
T ss_dssp             ECSEEETHHHHH-HHSSSEEEEETTCEEESCCCT--TCC----SCCSSSSCCHHHHHHHHHHHHTTCCCCCSSBHHHHTT
T ss_pred             EecCCcHHHHHH-HhcCceEEecCCcEEEecCHH--HHh----hhccccccchhHHHHHHHHhCCccChhhcccHHHHHh
Confidence            999999999999 99999999864 888873211  000    00001127899999999 8999888665       23


Q ss_pred             HcCCcceecCcchHHHHHHHHHHHHHhcC
Q 004891          176 KLGLIDAVVTSEELLKVSRLWALDIAARR  204 (725)
Q Consensus       176 ~~Glv~~vv~~~~l~~~a~~~a~~la~~~  204 (725)
                      +.|++|.+++.++   .+.+.++++.+..
T Consensus       261 ~~GvvD~vv~~e~---~a~~~~r~~ls~l  286 (587)
T 1pix_A          261 ETGFMREVYASEE---GVLEGIKKYVGML  286 (587)
T ss_dssp             TSCCSCEEESSHH---HHHHHHHHHHHTS
T ss_pred             hcCceeEecCCHH---HHHHHHHHHHHhC
Confidence            6999999997765   4455555554443

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=97.89  E-value=1.9e-05  Score=82.89  Aligned_cols=106  Identities=21%  Similarity=0.219  Sum_probs=70.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccc-ccCcccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSEF  385 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~l  385 (725)
                      .||+|||+|.+|.+++..++..++  +|+++|+++++++.....+.+..    .           ....++. .++++++
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~----~-----------~~~~~~v~~~~~~a~   70 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQ----A-----------FTAPKKIYSGEYSDC   70 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGG----G-----------GSCCCEEEECCGGGG
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHH----H-----------hcCCeEEEECCHHHh
Confidence            689999999999999999999887  89999999988764332222111    0           0011222 2456889


Q ss_pred             cCCCEEEEeccCC--------------hHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHh
Q 004891          386 KDVDMVIEAVIES--------------VPLKQKIFSELEKACPPHCILATNTSTIDLNIVG  432 (725)
Q Consensus       386 ~~aDlVIeavpe~--------------~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~  432 (725)
                      ++||+||.+++-.              ..+.+++.+.+.+++ |+++++..  +.|+..+.
T Consensus        71 ~~aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~--tNPv~~~t  128 (318)
T 1ez4_A           71 KDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSG-FDGIFLVA--ANPVDILT  128 (318)
T ss_dssp             TTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTT-CCSEEEEC--SSSHHHHH
T ss_pred             CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEe--CCcHHHHH
Confidence            9999999998421              145555666777775 56655543  44544333

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=97.87  E-value=2.1e-06  Score=91.52  Aligned_cols=112  Identities=13%  Similarity=0.027  Sum_probs=73.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|||||+|.||+++|..+...|++|++||++.+..               . .            ... ..++ +.+++
T Consensus       120 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~---------------~-~------------~~~-~~sl~ell~~  170 (381)
T 3oet_A          120 RTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAAR---------------G-D------------EGD-FRTLDELVQE  170 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHT---------------T-C------------CSC-BCCHHHHHHH
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHh---------------c-c------------Ccc-cCCHHHHHhh
Confidence            689999999999999999999999999999754321               0 0            011 2334 56789


Q ss_pred             CCEEEEeccCChH----HHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhcccCC-CCcEEEEecCCC
Q 004891          388 VDMVIEAVIESVP----LKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSS-QDRIIGAHFFSP  449 (725)
Q Consensus       388 aDlVIeavpe~~~----~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~-~~r~ig~h~~~p  449 (725)
                      ||+|+.++|-..+    ...-+-.+..+.++++++++..+.+-.  ...+.+.+.. .-...++..|.+
T Consensus       171 aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e~  239 (381)
T 3oet_A          171 ADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEG  239 (381)
T ss_dssp             CSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTT
T ss_pred             CCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeecccc
Confidence            9999999996554    333333456677899999874443332  3355555533 334455655543

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=97.86  E-value=2.1e-05  Score=82.24  Aligned_cols=107  Identities=19%  Similarity=0.235  Sum_probs=69.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCC--CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G--~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      +||+|||+|.+|.+++..++..+  .+|+++|+++++++.....+.+..    ...  .       --.++. +++++++
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~----~~~--~-------~~~v~~-~~~~a~~   66 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHAT----PFA--H-------PVWVWA-GSYGDLE   66 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTG----GGS--C-------CCEEEE-CCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhH----hhc--C-------CeEEEE-CCHHHhC
Confidence            48999999999999999999987  489999999887764322221110    000  0       012332 4578899


Q ss_pred             CCCEEEEeccC--C------------hHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHh
Q 004891          387 DVDMVIEAVIE--S------------VPLKQKIFSELEKACPPHCILATNTSTIDLNIVG  432 (725)
Q Consensus       387 ~aDlVIeavpe--~------------~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~  432 (725)
                      +||+||.+++-  +            ..+.+++.+.+.+++ |+++++..  +.|+..+.
T Consensus        67 ~aD~Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~--tNPv~~~t  123 (310)
T 2xxj_A           67 GARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAA-PEAVLLVA--TNPVDVMT  123 (310)
T ss_dssp             TEEEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEC--SSSHHHHH
T ss_pred             CCCEEEECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEe--cCchHHHH
Confidence            99999998742  2            345566667788885 55555443  44544333

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=97.85  E-value=2.1e-05  Score=82.84  Aligned_cols=107  Identities=19%  Similarity=0.228  Sum_probs=70.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccc-ccCccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSE  384 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~  384 (725)
                      ..||+|||+|.+|.+++..++..++  +|+++|+++++++.....+.+..    .           ....+.. .+++++
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~----~-----------~~~~~~i~~~~~~a   73 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNAL----P-----------FTSPKKIYSAEYSD   73 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTG----G-----------GSCCCEEEECCGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHH----H-----------hcCCeEEEECCHHH
Confidence            3699999999999999999998887  89999999988764332221110    0           0012222 245688


Q ss_pred             ccCCCEEEEeccCC--h------------HHHHHHHHHHHHhCCCCeEEEecCCCCChHHHh
Q 004891          385 FKDVDMVIEAVIES--V------------PLKQKIFSELEKACPPHCILATNTSTIDLNIVG  432 (725)
Q Consensus       385 l~~aDlVIeavpe~--~------------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~  432 (725)
                      +++||+||.+++-.  .            .+.+++...+.+++ |+++++..  +.|+..+.
T Consensus        74 ~~~aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~--tNPv~~~t  132 (326)
T 2zqz_A           74 AKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSG-FNGIFLVA--ANPVDILT  132 (326)
T ss_dssp             GGGCSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHT-CCSEEEEC--SSSHHHHH
T ss_pred             hCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe--CCcHHHHH
Confidence            99999999998421  1            44555666777876 55655443  44544333

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=97.83  E-value=3.4e-06  Score=89.23  Aligned_cols=100  Identities=13%  Similarity=0.011  Sum_probs=69.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||+|.||..+|+.+...|++|++||++++..  .            +             ..... .++ +.+++
T Consensus       146 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~------------~-------------~~~~~-~~l~ell~~  197 (333)
T 1dxy_A          146 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG--D------------H-------------PDFDY-VSLEDLFKQ  197 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS--C------------C-------------TTCEE-CCHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh--h------------H-------------hcccc-CCHHHHHhc
Confidence            689999999999999999999999999999986431  0            0             00111 233 55789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhcccC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS  436 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~  436 (725)
                      ||+|+.++|...+...-+-.+..+.++++++++..+++-.  ...+.+.+.
T Consensus       198 aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~  248 (333)
T 1dxy_A          198 SDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLK  248 (333)
T ss_dssp             CSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred             CCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence            9999999997665544332556677899998875444433  335555554

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=97.82  E-value=3.4e-06  Score=90.18  Aligned_cols=110  Identities=10%  Similarity=0.046  Sum_probs=71.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|||||+|.||.++|..+...|++|++||++.+..               ..+             .. ..++ +.+++
T Consensus       117 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~---------------~~g-------------~~-~~~l~ell~~  167 (380)
T 2o4c_A          117 RTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR---------------EPD-------------GE-FVSLERLLAE  167 (380)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHH---------------STT-------------SC-CCCHHHHHHH
T ss_pred             CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhh---------------ccC-------------cc-cCCHHHHHHh
Confidence            589999999999999999999999999999865421               001             11 1233 45789


Q ss_pred             CCEEEEeccCChH----HHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhcccCCC-CcEEEEecC
Q 004891          388 VDMVIEAVIESVP----LKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQ-DRIIGAHFF  447 (725)
Q Consensus       388 aDlVIeavpe~~~----~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~~-~r~ig~h~~  447 (725)
                      ||+|+.++|-..+    ...-+-++..+.++++++++..+.+-.  ...+.+.+... -.-.++..|
T Consensus       168 aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~  234 (380)
T 2o4c_A          168 ADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVW  234 (380)
T ss_dssp             CSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCC
T ss_pred             CCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCceEEeeee
Confidence            9999999986554    333222456677899998874444322  23455554332 233444444

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.79  E-value=8.4e-06  Score=75.15  Aligned_cols=69  Identities=20%  Similarity=0.195  Sum_probs=52.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||+|.||..++..|...|++|+++|+++++++...+.+          +           ......++. +.+++
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~----------~-----------~~~~~~~~~~~~~~~   80 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKY----------E-----------YEYVLINDIDSLIKN   80 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHH----------T-----------CEEEECSCHHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHh----------C-----------CceEeecCHHHHhcC
Confidence            5899999999999999999999999999999998876543211          0           011122333 55688


Q ss_pred             CCEEEEeccCC
Q 004891          388 VDMVIEAVIES  398 (725)
Q Consensus       388 aDlVIeavpe~  398 (725)
                      +|+||.|+|..
T Consensus        81 ~Divi~at~~~   91 (144)
T 3oj0_A           81 NDVIITATSSK   91 (144)
T ss_dssp             CSEEEECSCCS
T ss_pred             CCEEEEeCCCC
Confidence            99999999854

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.73  E-value=0.00015  Score=66.35  Aligned_cols=96  Identities=14%  Similarity=0.149  Sum_probs=59.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  388 (725)
                      ++|.|+|+|.+|..+|..|.+.|++|+++|++++.++.+.+.     ....-.|..+..+.-.          ...+.++
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~-----g~~~i~gd~~~~~~l~----------~a~i~~a   72 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRER-----GVRAVLGNAANEEIMQ----------LAHLECA   72 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT-----TCEEEESCTTSHHHHH----------HTTGGGC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHc-----CCCEEECCCCCHHHHH----------hcCcccC
Confidence            589999999999999999999999999999999987765320     0000001111000000          0235789


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCeEEE
Q 004891          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILA  420 (725)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~  420 (725)
                      |+||.+++++..... +...+....+.-.|++
T Consensus        73 d~vi~~~~~~~~n~~-~~~~a~~~~~~~~iia  103 (140)
T 3fwz_A           73 KWLILTIPNGYEAGE-IVASARAKNPDIEIIA  103 (140)
T ss_dssp             SEEEECCSCHHHHHH-HHHHHHHHCSSSEEEE
T ss_pred             CEEEEECCChHHHHH-HHHHHHHHCCCCeEEE
Confidence            999999997654432 2333434333334554

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.72  E-value=5.2e-05  Score=66.60  Aligned_cols=40  Identities=20%  Similarity=0.206  Sum_probs=36.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCC-CcEEEEeCChHHHHHH
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKG  347 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~  347 (725)
                      +++|.|+|+|.||..++..|.+.| ++|+++|++++.++..
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~   45 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVL   45 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHH
Confidence            578999999999999999999999 9999999999886653

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=97.72  E-value=2.1e-05  Score=80.90  Aligned_cols=91  Identities=14%  Similarity=0.136  Sum_probs=63.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||+|.||.++|..|.+.|++|+++|+++++++...+.          .+             +...+++ +.+++
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~----------~g-------------~~~~~~~~~~~~~  186 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQK----------FP-------------LEVVNSPEEVIDK  186 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTT----------SC-------------EEECSCGGGTGGG
T ss_pred             CEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHH----------cC-------------CeeehhHHhhhcC
Confidence            589999999999999999999999999999998876543210          01             2222244 56789


Q ss_pred             CCEEEEeccCChHHH-HHHHHHHHHhCCCCeEEEecCC
Q 004891          388 VDMVIEAVIESVPLK-QKIFSELEKACPPHCILATNTS  424 (725)
Q Consensus       388 aDlVIeavpe~~~~k-~~v~~~l~~~~~~~~ii~s~tS  424 (725)
                      +|+||.|+|...... ...+.  .+.+++++++++..+
T Consensus       187 aDiVi~atp~~~~~~~~~~i~--~~~l~~g~~viDv~~  222 (275)
T 2hk9_A          187 VQVIVNTTSVGLKDEDPEIFN--YDLIKKDHVVVDIIY  222 (275)
T ss_dssp             CSEEEECSSTTSSTTCCCSSC--GGGCCTTSEEEESSS
T ss_pred             CCEEEEeCCCCCCCCCCCCCC--HHHcCCCCEEEEcCC
Confidence            999999998654210 00111  245778888876555

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=97.71  E-value=9.4e-05  Score=67.52  Aligned_cols=86  Identities=19%  Similarity=0.150  Sum_probs=60.5

Q ss_pred             cceEEEEcC----CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcc
Q 004891          308 VRKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (725)
Q Consensus       308 ~~kIaVIG~----G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (725)
                      -++|+|||+    |.||..++.+|.+.|++|+.+|++.+.+                             ..+....+++
T Consensus        14 p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i-----------------------------~G~~~~~s~~   64 (138)
T 1y81_A           14 FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----------------------------EGLKCYRSVR   64 (138)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----------------------------TTEECBSSGG
T ss_pred             CCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE-----------------------------CCeeecCCHH
Confidence            368999999    9999999999999999876666653221                             1233444553


Q ss_pred             -cccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC
Q 004891          384 -EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI  426 (725)
Q Consensus       384 -~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~  426 (725)
                       ....+|++|.++|  .+...+++.++.+ .....++. .+++.
T Consensus        65 el~~~vDlvii~vp--~~~v~~v~~~~~~-~g~~~i~~-~~~~~  104 (138)
T 1y81_A           65 ELPKDVDVIVFVVP--PKVGLQVAKEAVE-AGFKKLWF-QPGAE  104 (138)
T ss_dssp             GSCTTCCEEEECSC--HHHHHHHHHHHHH-TTCCEEEE-CTTSC
T ss_pred             HhCCCCCEEEEEeC--HHHHHHHHHHHHH-cCCCEEEE-cCccH
Confidence             3467999999999  5666777777665 44566654 34444

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=97.70  E-value=4.6e-06  Score=88.19  Aligned_cols=100  Identities=15%  Similarity=0.042  Sum_probs=68.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||+|.||..+|+.+...|++|++||++++..  .            +             ..+. ..++ +.+++
T Consensus       147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~------------~-------------~~~~-~~~l~ell~~  198 (331)
T 1xdw_A          147 CTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG--I------------E-------------DYCT-QVSLDEVLEK  198 (331)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS--C------------T-------------TTCE-ECCHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH--H------------H-------------hccc-cCCHHHHHhh
Confidence            689999999999999999999999999999986531  0            0             0011 1233 55789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhcccC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS  436 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~  436 (725)
                      ||+|+.++|...+...-+-.+..+.++++++++..+.+  .....+.+.+.
T Consensus       199 aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~  249 (331)
T 1xdw_A          199 SDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVE  249 (331)
T ss_dssp             CSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             CCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHH
Confidence            99999999965543332224556678999988744433  22334555443

>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A

Probab=97.70  E-value=0.00023  Score=68.93  Aligned_cols=143  Identities=15%  Similarity=0.104  Sum_probs=94.6

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEE--EEEcCCCC----CcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCc
Q 004891           27 ALAIPIVAGLKDKFEEATSRDDVKAI--VLTGNGGR----FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKP  100 (725)
Q Consensus        27 al~~~~~~~l~~~l~~~~~~~~v~~v--Vl~g~g~~----F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp  100 (725)
                      .++.++...+...|..++.++..+-|  -|.+.|..    ...-+|+                .....++ +.|...+.|
T Consensus        36 ~I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~~~~~~~~~~G~v----------------~aglaIy-d~m~~~~~~   98 (205)
T 4gm2_A           36 PIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGI----------------TDVISIV-DVINYISSD   98 (205)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECTTEETTEESCTTHH----------------HHHHHHH-HHHHHSSSC
T ss_pred             EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCcCCCCCCCCH----------------HHHHHHH-HHHHhcCCC
Confidence            48899999999999988854433333  33444411    0000111                1233555 678889999


Q ss_pred             EEEEEcccccchhhHHhhhcC--EEEeeCCceEeCcccccCCCCCchhhc-----------------hHhhhh--CHHHH
Q 004891          101 IVAAVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQ-----------------RLPRLV--GLSKA  159 (725)
Q Consensus       101 ~Iaav~G~a~GgG~~lalacD--~~ia~~~a~~~~pe~~~Gl~p~~g~~~-----------------~l~r~v--G~~~a  159 (725)
                      |...+-|.|.+.|.-|++++|  .|++.+.+++.+-...-|.. .+-.+.                 .+.+.-  .....
T Consensus        99 V~t~~~G~AaS~as~il~aG~~gkR~~lP~a~iMIHqP~~~~~-~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I  177 (205)
T 4gm2_A           99 VYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIP-FNQATNIEIQNKEIMNTKKKVIEIISKNTEKDTNVI  177 (205)
T ss_dssp             EEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEEECCCCCCCC-SSCCSCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred             EEEEEEeeehhHHHHHHhcCCCCCEEecCCCEEEEecCccccc-ccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence            999999999999999999999  59999999987765554431 111110                 011111  23444


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCcc
Q 004891          160 IEMMLLSKSITSEEGWKLGLIDAVVTSE  187 (725)
Q Consensus       160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~  187 (725)
                      .+++-....++|+||++.||||+|++.+
T Consensus       178 ~~~m~rd~~msa~EA~eyGlID~V~~~e  205 (205)
T 4gm2_A          178 SNVLERDKYFNADEAVDFKLIDHILEKE  205 (205)
T ss_dssp             HHHTTSCEEEEHHHHHHTTSCSEECCC-
T ss_pred             HHHhcCCcccCHHHHHHcCCccEeecCC
Confidence            5556667778999999999999998653

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.69  E-value=0.00012  Score=70.05  Aligned_cols=39  Identities=18%  Similarity=0.201  Sum_probs=35.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC-CCcEEEEeCChHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKG  347 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~-G~~V~~~d~~~e~~~~~  347 (725)
                      ++|.|+|+|.||..+|..|.+. |++|+++|++++.++.+
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~   79 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQH   79 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHH
Confidence            5799999999999999999999 99999999999887654

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=97.69  E-value=0.00016  Score=82.40  Aligned_cols=144  Identities=17%  Similarity=0.102  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCC-CCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEEccccc
Q 004891           32 IVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG-FDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL  110 (725)
Q Consensus        32 ~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG-~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~  110 (725)
                      ...++.+.|+.+++|+.++.|+|.-.    |-| +++....             .+.+.+ +.+....|||||.+++ +.
T Consensus        71 ~~~~i~~~L~~a~~d~~ik~I~L~in----spGgG~v~~~~-------------~I~~~i-~~~k~~gkpvva~~~~-aa  131 (593)
T 3bf0_A           71 SLFDIVNTIRQAKDDRNITGIVMDLK----NFAGGDQPSMQ-------------YIGKAL-KEFRDSGKPVYAVGEN-YS  131 (593)
T ss_dssp             EHHHHHHHHHHHHHCTTCCCEEEECT----EEEECCHHHHH-------------HHHHHH-HHHHHTTCCEEEEESC-EE
T ss_pred             CHHHHHHHHHHHHhCCCceEEEEEeC----CCCCCcHHHHH-------------HHHHHH-HHHHhcCCeEEEEEcc-ch
Confidence            46788999999999999999999643    112 4443221             122334 3355567999999876 67


Q ss_pred             chhhHHhhhcCEEEeeCCceEeCccccc------------CCCC---------Cchhh-----------chH--------
Q 004891          111 GGGLELAMGCHARIAAPKTQLGLPELTL------------GVIP---------GFGGT-----------QRL--------  150 (725)
Q Consensus       111 GgG~~lalacD~~ia~~~a~~~~pe~~~------------Gl~p---------~~g~~-----------~~l--------  150 (725)
                      .+|+-|+++||.+++.+.+.++...+..            |+-+         ..+-.           ..+        
T Consensus       132 s~~y~lAsaad~i~~~P~~~vg~~g~~~~~~~~~~~l~klGi~~~~~~~G~~K~a~ep~~r~~ms~~~re~~~~~l~~~~  211 (593)
T 3bf0_A          132 QGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELW  211 (593)
T ss_dssp             HHHHHHHTTSSEEEECTTCCEECCCCBCCEEECHHHHHHTTCEEEEEEECTTCGGGHHHHCSSCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhCCEEEECCCceEEEecccccccCHHHHHHHcCCeEEEEEeecccCCCCcccCCCCCHHHHHHHHHHHHHHH
Confidence            7899999999999999999988766542            2210         00000           001        


Q ss_pred             ---------hhhhCHHHHHHHHHc-------CCCCCHHHHHHcCCcceecCcchHHHHHH
Q 004891          151 ---------PRLVGLSKAIEMMLL-------SKSITSEEGWKLGLIDAVVTSEELLKVSR  194 (725)
Q Consensus       151 ---------~r~vG~~~a~~l~l~-------g~~~~a~eA~~~Glv~~vv~~~~l~~~a~  194 (725)
                               .|-+......+++-.       +..++|++|++.||||++...+++.+...
T Consensus       212 ~~~~~~va~~Rg~~~e~l~~~~d~~~~~l~~~~~~ta~~A~~~GLvD~i~~~~e~~~~l~  271 (593)
T 3bf0_A          212 QNYLNTVAANRQIPAEQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALT  271 (593)
T ss_dssp             HHHHHHHHHHHTSCHHHHCCHHHHHHHHHHTTTTCHHHHHHHTTSSSEECCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHhhhhhhhhhcCCccHHHHHHCCCCCCCCCHHHHHHHHH
Confidence                     111222333334443       79999999999999999997666555443

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.60  E-value=0.00011  Score=76.24  Aligned_cols=87  Identities=22%  Similarity=0.276  Sum_probs=60.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||+|.||..+|+.+...|.+|++||++++..+.+.           +.|.          ..+. ..++ +.+++
T Consensus       156 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g~----------~~~~-~~~l~~~l~~  213 (293)
T 3d4o_A          156 ANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIA-----------EMGM----------EPFH-ISKAAQELRD  213 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-----------HTTS----------EEEE-GGGHHHHTTT
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-----------HCCC----------eecC-hhhHHHHhcC
Confidence            6899999999999999999999999999999987654321           1110          0000 1223 45789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEec
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATN  422 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~  422 (725)
                      +|+||.++|..+--.     +..+.++++.+++..
T Consensus       214 aDvVi~~~p~~~i~~-----~~l~~mk~~~~lin~  243 (293)
T 3d4o_A          214 VDVCINTIPALVVTA-----NVLAEMPSHTFVIDL  243 (293)
T ss_dssp             CSEEEECCSSCCBCH-----HHHHHSCTTCEEEEC
T ss_pred             CCEEEECCChHHhCH-----HHHHhcCCCCEEEEe
Confidence            999999998533211     223456788877643

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.60  E-value=0.00013  Score=66.45  Aligned_cols=39  Identities=26%  Similarity=0.264  Sum_probs=35.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHH
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLK  346 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~  346 (725)
                      +++|.|+|+|.+|..++..|.+.|++|+++|++++.++.
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~   44 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNA   44 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHT
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            467999999999999999999999999999999877554

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.56  E-value=5.7e-05  Score=78.75  Aligned_cols=87  Identities=20%  Similarity=0.213  Sum_probs=59.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||+|.||..+|+.+...|++|++||+++++.+...           +.|.          ..+. ..++ +.+++
T Consensus       158 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~-----------~~g~----------~~~~-~~~l~~~l~~  215 (300)
T 2rir_A          158 SQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARIT-----------EMGL----------VPFH-TDELKEHVKD  215 (300)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-----------HTTC----------EEEE-GGGHHHHSTT
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HCCC----------eEEc-hhhHHHHhhC
Confidence            6899999999999999999999999999999987654321           1110          0001 1233 55789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEec
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATN  422 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~  422 (725)
                      ||+||.++|..+--     ++..+.++++++++..
T Consensus       216 aDvVi~~~p~~~i~-----~~~~~~mk~g~~lin~  245 (300)
T 2rir_A          216 IDICINTIPSMILN-----QTVLSSMTPKTLILDL  245 (300)
T ss_dssp             CSEEEECCSSCCBC-----HHHHTTSCTTCEEEEC
T ss_pred             CCEEEECCChhhhC-----HHHHHhCCCCCEEEEE
Confidence            99999999953221     1233456777776543

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=97.56  E-value=0.00011  Score=67.76  Aligned_cols=101  Identities=12%  Similarity=0.036  Sum_probs=65.1

Q ss_pred             ceEEEEcC----CCCcHHHHHHHHHCCCcEEEEeCCh--HHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc
Q 004891          309 RKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (725)
Q Consensus       309 ~kIaVIG~----G~mG~~iA~~l~~~G~~V~~~d~~~--e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (725)
                      ++|+|||+    |.||..++.+|.+.|++|+.+|++.  +.+                             ..+....++
T Consensus        14 ~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i-----------------------------~G~~~~~sl   64 (145)
T 2duw_A           14 RTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTL-----------------------------LGQQGYATL   64 (145)
T ss_dssp             CCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEE-----------------------------TTEECCSST
T ss_pred             CEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCccccccc-----------------------------CCeeccCCH
Confidence            57999999    8999999999999999977777654  211                             123334455


Q ss_pred             cc-ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhccc-CCCCcEEE
Q 004891          383 SE-FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKT-SSQDRIIG  443 (725)
Q Consensus       383 ~~-l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~-~~~~r~ig  443 (725)
                      ++ ...+|+|+.|+|  .....+++.++.+ .....+++. +++.. .++.+.. ...-+++|
T Consensus        65 ~el~~~~Dlvii~vp--~~~v~~v~~~~~~-~g~~~i~i~-~~~~~-~~l~~~a~~~Gi~~ig  122 (145)
T 2duw_A           65 ADVPEKVDMVDVFRN--SEAAWGVAQEAIA-IGAKTLWLQ-LGVIN-EQAAVLAREAGLSVVM  122 (145)
T ss_dssp             TTCSSCCSEEECCSC--STHHHHHHHHHHH-HTCCEEECC-TTCCC-HHHHHHHHTTTCEEEC
T ss_pred             HHcCCCCCEEEEEeC--HHHHHHHHHHHHH-cCCCEEEEc-CChHH-HHHHHHHHHcCCEEEc
Confidence            33 467999999999  3555667776655 345566553 45543 3444333 23334443

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=97.54  E-value=0.00018  Score=75.03  Aligned_cols=107  Identities=18%  Similarity=0.298  Sum_probs=66.8

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHHCCC--cEEEEeC--ChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcc
Q 004891          309 RKVAVIG-GGLMGSGIATAHILNNI--YVVLKEV--NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (725)
Q Consensus       309 ~kIaVIG-~G~mG~~iA~~l~~~G~--~V~~~d~--~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (725)
                      +||+|+| +|.+|.+++..|+..|+  +++++|+  ++++++.....+.+... . ...           -.++. ++++
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~-~-~~~-----------~~v~~-~~~~   66 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIA-Y-DSN-----------TRVRQ-GGYE   66 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHT-T-TCC-----------CEEEE-CCGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHh-h-CCC-----------cEEEe-CCHH
Confidence            4899999 99999999999999886  7999999  87765432222211110 0 000           01222 3467


Q ss_pred             cccCCCEEEEecc--CC------------hHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHh
Q 004891          384 EFKDVDMVIEAVI--ES------------VPLKQKIFSELEKACPPHCILATNTSTIDLNIVG  432 (725)
Q Consensus       384 ~l~~aDlVIeavp--e~------------~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~  432 (725)
                      ++++||+||.+..  ..            ..+.+.+.+.+.++. ++++++.  ++.|+..+.
T Consensus        67 a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~~~viv--~SNPv~~~~  126 (303)
T 1o6z_A           67 DTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHN-DDYISLT--TSNPVDLLN  126 (303)
T ss_dssp             GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTC-SCCEEEE--CCSSHHHHH
T ss_pred             HhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEE--eCChHHHHH
Confidence            8999999999873  11            135556666777764 5565543  344554333

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.54  E-value=0.00012  Score=68.18  Aligned_cols=38  Identities=24%  Similarity=0.283  Sum_probs=35.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLK  346 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~  346 (725)
                      ++|.|+|+|.+|..+|..|.+.|++|+++|++++.++.
T Consensus        20 ~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~   57 (155)
T 2g1u_A           20 KYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHR   57 (155)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGG
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence            68999999999999999999999999999999887544

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=97.51  E-value=0.00013  Score=74.38  Aligned_cols=64  Identities=17%  Similarity=0.230  Sum_probs=49.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccCC
Q 004891          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV  388 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~a  388 (725)
                      +|+|||+|.||.++|..|.+.|++|+++|+++++++...+.+          +             .. .+++ +. +++
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~----------~-------------~~-~~~~~~~-~~~  172 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEF----------G-------------LR-AVPLEKA-REA  172 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHH----------T-------------CE-ECCGGGG-GGC
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----------c-------------cc-hhhHhhc-cCC
Confidence            799999999999999999999999999999998766543211          1             01 1233 44 889


Q ss_pred             CEEEEeccCC
Q 004891          389 DMVIEAVIES  398 (725)
Q Consensus       389 DlVIeavpe~  398 (725)
                      |+||.|+|..
T Consensus       173 Divi~~tp~~  182 (263)
T 2d5c_A          173 RLLVNATRVG  182 (263)
T ss_dssp             SEEEECSSTT
T ss_pred             CEEEEccCCC
Confidence            9999999855

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=97.51  E-value=0.00031  Score=73.51  Aligned_cols=101  Identities=16%  Similarity=0.197  Sum_probs=65.4

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCC--CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccc---ccCc
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG---VLDY  382 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G--~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~~~  382 (725)
                      +||+|||+ |.+|.+++..|+..|  .+|+++|+++ . +.....        +.....        ...+..   ++++
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~-~-~~~a~d--------L~~~~~--------~~~l~~~~~t~d~   62 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH-T-PGVAAD--------LSHIET--------RATVKGYLGPEQL   62 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS-H-HHHHHH--------HTTSSS--------SCEEEEEESGGGH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc-c-HHHHHH--------HhccCc--------CceEEEecCCCCH
Confidence            38999998 999999999999988  6999999997 1 111100        111110        012443   3566


Q ss_pred             c-cccCCCEEEEecc--CCh------------HHHHHHHHHHHHhCCCCeEEEecCCCCChHH
Q 004891          383 S-EFKDVDMVIEAVI--ESV------------PLKQKIFSELEKACPPHCILATNTSTIDLNI  430 (725)
Q Consensus       383 ~-~l~~aDlVIeavp--e~~------------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~  430 (725)
                      + ++++||+||.++.  ...            .+.+++.+.+.+++ |+++++..  +.|+..
T Consensus        63 ~~a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~--sNPv~~  122 (314)
T 1mld_A           63 PDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHC-PDAMICII--SNPVNS  122 (314)
T ss_dssp             HHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEEC--SSCHHH
T ss_pred             HHHhCCCCEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEE--CCCcch
Confidence            4 6999999999973  111            56677777888887 55544432  344443

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=97.46  E-value=0.00023  Score=74.88  Aligned_cols=102  Identities=18%  Similarity=0.250  Sum_probs=65.8

Q ss_pred             cceEEEEc-CCCCcHHHHHHHHHCC--CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccc---ccC
Q 004891          308 VRKVAVIG-GGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG---VLD  381 (725)
Q Consensus       308 ~~kIaVIG-~G~mG~~iA~~l~~~G--~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~~  381 (725)
                      .+||+|+| +|.+|.+++..|+..|  .+|+++|++++. ..+.+     +    .....        ...+..   +++
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~-~~~~d-----L----~~~~~--------~~~v~~~~~t~d   69 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAP-GVTAD-----I----SHMDT--------GAVVRGFLGQQQ   69 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHH-HHHHH-----H----HTSCS--------SCEEEEEESHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcH-hHHHH-----h----hcccc--------cceEEEEeCCCC
Confidence            36899999 7999999999999999  799999998761 11110     1    11100        012222   345


Q ss_pred             c-ccccCCCEEEEeccC--C------------hHHHHHHHHHHHHhCCCCeEEEecCCCCChHH
Q 004891          382 Y-SEFKDVDMVIEAVIE--S------------VPLKQKIFSELEKACPPHCILATNTSTIDLNI  430 (725)
Q Consensus       382 ~-~~l~~aDlVIeavpe--~------------~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~  430 (725)
                      + +++++||+||.+++-  .            ..+.+.+.+.+.+.. ++.+|+.  +|.|+..
T Consensus        70 ~~~al~gaDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~-p~~~viv--~SNPv~~  130 (326)
T 1smk_A           70 LEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCC-PRAIVNL--ISNPVNS  130 (326)
T ss_dssp             HHHHHTTCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHC-TTSEEEE--CCSSHHH
T ss_pred             HHHHcCCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEE--ECCchHH
Confidence            5 668999999999841  1            145666777777776 5555543  2455554

>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=97.39  E-value=0.0026  Score=64.99  Aligned_cols=150  Identities=13%  Similarity=0.081  Sum_probs=95.0

Q ss_pred             eCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhC
Q 004891           20 LINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDC   97 (725)
Q Consensus        20 l~~p~--~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   97 (725)
                      -+++.  .-+++....+.+.++++.+.+. .+-+|.|.-.|+     +-.++-.   . . ...+. .....+ .++...
T Consensus       127 a~d~~~~gGs~g~~~~~K~~r~ie~A~~~-~lPlI~l~dsgG-----ar~qEGi---~-s-l~q~a-ki~~~l-~~~s~~  193 (285)
T 2f9i_B          127 VMDSRFRMGSMGSVIGEKICRIIDYCTEN-RLPFILFSASGG-----ARMQEGI---I-S-LMQMG-KTSVSL-KRHSDA  193 (285)
T ss_dssp             EECTTTGGGCCCHHHHHHHHHHHHHHHHT-TCCEEEEEEECS-----CCGGGHH---H-H-HHHHH-HHHHHH-HHHHHT
T ss_pred             EEccccccCcCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCC-----cchhhhh---h-h-HhHHH-HHHHHH-HHHHcC
Confidence            34443  3789999999999999988865 566777764333     2222200   0 0 00111 112233 446678


Q ss_pred             CCcEEEEEcccccchhhHH-hhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHHHH
Q 004891           98 KKPIVAAVEGLALGGGLEL-AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWK  176 (725)
Q Consensus        98 ~kp~Iaav~G~a~GgG~~l-alacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~  176 (725)
                      ..|.|+++.|.|.||+... ++.+|+++|.++|.+++-...       .....+-+-+          .-.--+|+.+.+
T Consensus       194 ~vP~Isvv~g~~~GG~~as~a~~~D~i~a~p~A~i~~aGP~-------vi~~~~~~~~----------~e~~~~Ae~~~~  256 (285)
T 2f9i_B          194 GLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGRR-------VIEQTINEKL----------PDDFQTAEFLLE  256 (285)
T ss_dssp             TCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCHH-------HHHHHHTSCC----------CTTTTBHHHHHH
T ss_pred             CCCEEEEEeCCccHHHHHHhhhCCCEEEEeCCcEEEEcCHH-------HHHHHhcccc----------hHhHhhHHHHHh
Confidence            9999999999999998654 789999999999888763211       1111111111          111125777889


Q ss_pred             cCCcceecCcchHHHHHHHHHHH
Q 004891          177 LGLIDAVVTSEELLKVSRLWALD  199 (725)
Q Consensus       177 ~Glv~~vv~~~~l~~~a~~~a~~  199 (725)
                      .|+||.|++++++.+...++...
T Consensus       257 ~G~iD~Iv~~~e~r~~l~~~L~~  279 (285)
T 2f9i_B          257 HGQLDKVVHRNDMRQTLSEILKI  279 (285)
T ss_dssp             TTCCSEECCGGGHHHHHHHHHHH
T ss_pred             cCCccEEeChHHHHHHHHHHHHH
Confidence            99999999988877766665543

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=97.38  E-value=8.9e-05  Score=81.68  Aligned_cols=88  Identities=17%  Similarity=0.152  Sum_probs=62.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||.|.||.++|+.+...|.+|++||+++.....+.           ..|             ... .++ +.+++
T Consensus       278 ktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~-----------~~G-------------~~~-~~l~ell~~  332 (494)
T 3d64_A          278 KIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAA-----------MEG-------------YRV-VTMEYAADK  332 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHH-----------TTT-------------CEE-CCHHHHTTT
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHH-----------HcC-------------CEe-CCHHHHHhc
Confidence            6899999999999999999999999999999987632221           111             111 233 56889


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~  425 (725)
                      ||+|+.++...--+.    .+..+.++++++|+..+++
T Consensus       333 aDiVi~~~~t~~lI~----~~~l~~MK~gAilINvgrg  366 (494)
T 3d64_A          333 ADIFVTATGNYHVIN----HDHMKAMRHNAIVCNIGHF  366 (494)
T ss_dssp             CSEEEECSSSSCSBC----HHHHHHCCTTEEEEECSSS
T ss_pred             CCEEEECCCcccccC----HHHHhhCCCCcEEEEcCCC
Confidence            999999983221122    3445668999998754443

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=97.37  E-value=7.8e-05  Score=81.81  Aligned_cols=88  Identities=15%  Similarity=0.149  Sum_probs=62.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||.|.||.++|+.+...|.+|++||+++.....+.           ..|             ... .++ +.+++
T Consensus       258 ktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~-----------~~g-------------~~~-~~l~ell~~  312 (479)
T 1v8b_A          258 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAV-----------MEG-------------FNV-VTLDEIVDK  312 (479)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHH-----------TTT-------------CEE-CCHHHHTTT
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHH-----------HcC-------------CEe-cCHHHHHhc
Confidence            6899999999999999999999999999999987643321           111             111 233 56889


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~  425 (725)
                      ||+||.+....--+.    .+..+.++++++|+..+++
T Consensus       313 aDiVi~~~~t~~lI~----~~~l~~MK~gailiNvgrg  346 (479)
T 1v8b_A          313 GDFFITCTGNVDVIK----LEHLLKMKNNAVVGNIGHF  346 (479)
T ss_dssp             CSEEEECCSSSSSBC----HHHHTTCCTTCEEEECSST
T ss_pred             CCEEEECCChhhhcC----HHHHhhcCCCcEEEEeCCC
Confidence            999999963211121    2444568999998754443

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=97.36  E-value=0.00052  Score=74.47  Aligned_cols=73  Identities=16%  Similarity=0.140  Sum_probs=47.7

Q ss_pred             cceEEEEcCCCC-cHHHHHHHHH--C---CCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccC
Q 004891          308 VRKVAVIGGGLM-GSGIATAHIL--N---NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (725)
Q Consensus       308 ~~kIaVIG~G~m-G~~iA~~l~~--~---G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (725)
                      .+||+|||+|.. +.++...|+.  .   +.+|+++|+++++++.+.+ +...+   ....           .+++.++|
T Consensus         2 ~~KI~IIGaG~v~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~-~~~~~---~~~~-----------~~v~~t~d   66 (417)
T 1up7_A            2 HMRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVD-FVKRL---VKDR-----------FKVLISDT   66 (417)
T ss_dssp             CCEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHH-HHHHH---HTTS-----------SEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHH-HHHHH---hhCC-----------eEEEEeCC
Confidence            369999999985 1122234455  3   5589999999998775332 22111   1110           24666678


Q ss_pred             c-ccccCCCEEEEec
Q 004891          382 Y-SEFKDVDMVIEAV  395 (725)
Q Consensus       382 ~-~~l~~aDlVIeav  395 (725)
                      + +++++||+||+++
T Consensus        67 ~~~al~~AD~Viita   81 (417)
T 1up7_A           67 FEGAVVDAKYVIFQF   81 (417)
T ss_dssp             HHHHHTTCSEEEECC
T ss_pred             HHHHhCCCCEEEEcC
Confidence            6 8899999999998

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.34  E-value=0.00087  Score=66.09  Aligned_cols=95  Identities=16%  Similarity=0.159  Sum_probs=59.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCC-HHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT-QDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      +||.|+|+|.+|..+|..|.+.|++|+++|++++.++...+.    .....-.|..+ .+...           ...+.+
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~----~~~~~i~gd~~~~~~l~-----------~a~i~~   65 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK----LKATIIHGDGSHKEILR-----------DAEVSK   65 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH----SSSEEEESCTTSHHHHH-----------HHTCCT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH----cCCeEEEcCCCCHHHHH-----------hcCccc
Confidence            379999999999999999999999999999999987654221    00000011111 10000           023688


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHh-CCCCeEEE
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKA-CPPHCILA  420 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~-~~~~~ii~  420 (725)
                      ||+||.+++++..  ..+...+.+. .+...+++
T Consensus        66 ad~vi~~~~~d~~--n~~~~~~a~~~~~~~~iia   97 (218)
T 3l4b_C           66 NDVVVILTPRDEV--NLFIAQLVMKDFGVKRVVS   97 (218)
T ss_dssp             TCEEEECCSCHHH--HHHHHHHHHHTSCCCEEEE
T ss_pred             CCEEEEecCCcHH--HHHHHHHHHHHcCCCeEEE
Confidence            9999999985543  2334444443 44455554

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=97.31  E-value=0.0035  Score=69.39  Aligned_cols=137  Identities=12%  Similarity=0.107  Sum_probs=91.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHH-HHhhCCCcEEE
Q 004891           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVN-LIEDCKKPIVA  103 (725)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~kp~Ia  103 (725)
                      --++.....+.+.++++.+.+. .+-+|.|.-.     .|+.+.+-..        .+.... +.+.+ ....-..|+|+
T Consensus       118 gGS~g~~~~~Ki~ra~e~A~~~-~lPvI~l~dS-----GGARmqeg~~--------sl~~~~-~i~~~~~~~s~~iP~Is  182 (531)
T 3n6r_B          118 GGSVSETHSKKICKIMDMAMQN-GAPVIGINDS-----GGARIQEGVD--------SLAGYG-EVFQRNIMASGVVPQIS  182 (531)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECC-----CCBCGGGTHH--------HHHHHH-HHHHHHHHTTTTSCEEE
T ss_pred             cccccHHHHHHHHHHHHHHHHc-CCCEEEEeCC-----CccccCcccc--------hhhhHH-HHHHHHHHHhCCCCEEE
Confidence            4789999999999999988765 4567777653     4455543110        000111 12211 11224589999


Q ss_pred             EEcccccchhhHHhhhcCEEEeeCC-ceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHH-------H
Q 004891          104 AVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------W  175 (725)
Q Consensus       104 av~G~a~GgG~~lalacD~~ia~~~-a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA-------~  175 (725)
                      +|.|+|.|||......||++|+.++ +.+++.                    |+....  ..+|+.+++++.       .
T Consensus       183 vv~Gp~~GG~a~s~a~~D~vi~~~~~a~i~~a--------------------GP~vI~--~~~ge~v~~E~LGGa~~h~~  240 (531)
T 3n6r_B          183 MIMGPCAGGAVYSPAMTDFIFMVKDSSYMFVT--------------------GPDVVK--TVTNEQVSAEELGGATTHTR  240 (531)
T ss_dssp             EECSCCBGGGGHHHHHSSEEEEETTTCBCBSS--------------------CHHHHH--HHHCCCCCHHHHHBHHHHHH
T ss_pred             EEeCCcchHHHHHhhhCCEEEEecCCceEeec--------------------CHHHHH--HHhCCccChhhcchHHHHhh
Confidence            9999999999988888999999985 666642                    322222  257899999999       8


Q ss_pred             HcCCcceecCcchHHHHHHHHHHHHH
Q 004891          176 KLGLIDAVVTSEELLKVSRLWALDIA  201 (725)
Q Consensus       176 ~~Glv~~vv~~~~l~~~a~~~a~~la  201 (725)
                      +.|++|.+++.++   .+.+.++++.
T Consensus       241 ~sG~~d~v~~~e~---~a~~~~r~ll  263 (531)
T 3n6r_B          241 KSSVADAAFENDV---EALAEVRRLV  263 (531)
T ss_dssp             TTSCCSEEESSHH---HHHHHHHHHH
T ss_pred             ccCcceEEeCCHH---HHHHHHHHHH
Confidence            9999999997753   3444444443

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=97.31  E-value=0.00027  Score=78.09  Aligned_cols=86  Identities=26%  Similarity=0.260  Sum_probs=62.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||+|.||..+|+.+...|.+|+++|+++++++.+.+           .|.             .. .++ +.+++
T Consensus       275 ktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~-----------~Ga-------------~~-~~l~e~l~~  329 (494)
T 3ce6_A          275 KKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMM-----------EGF-------------DV-VTVEEAIGD  329 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TTC-------------EE-CCHHHHGGG
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------cCC-------------EE-ecHHHHHhC
Confidence            68999999999999999999999999999999988665431           121             11 122 44678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (725)
                      +|+||+|++...-+.    .+..+.++++++|+...
T Consensus       330 aDvVi~atgt~~~i~----~~~l~~mk~ggilvnvG  361 (494)
T 3ce6_A          330 ADIVVTATGNKDIIM----LEHIKAMKDHAILGNIG  361 (494)
T ss_dssp             CSEEEECSSSSCSBC----HHHHHHSCTTCEEEECS
T ss_pred             CCEEEECCCCHHHHH----HHHHHhcCCCcEEEEeC
Confidence            999999987544332    23445578888886443

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=97.30  E-value=0.00096  Score=71.05  Aligned_cols=98  Identities=12%  Similarity=0.130  Sum_probs=63.6

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHC--CCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc
Q 004891          306 RGVRKVAVIGGGLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (725)
Q Consensus       306 ~~~~kIaVIG~G~mG~~iA~~l~~~--G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (725)
                      +++.||+|||+|.||..++..+.+.  +++|+ ++|+++++++...+.                      .+ +...+++
T Consensus        11 ~~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~----------------------~~-~~~~~~~   67 (354)
T 3q2i_A           11 DRKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVER----------------------TG-ARGHASL   67 (354)
T ss_dssp             SSCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH----------------------HC-CEEESCH
T ss_pred             CCcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHH----------------------cC-CceeCCH
Confidence            3457899999999999999999987  77765 899999987665321                      11 2445566


Q ss_pred             -cccc--CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHH
Q 004891          383 -SEFK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI  430 (725)
Q Consensus       383 -~~l~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~  430 (725)
                       +.++  ++|+|++|+|.....  ++.....+.  ...+++-..-+....+
T Consensus        68 ~~ll~~~~~D~V~i~tp~~~h~--~~~~~al~~--gk~v~~EKP~a~~~~~  114 (354)
T 3q2i_A           68 TDMLAQTDADIVILTTPSGLHP--TQSIECSEA--GFHVMTEKPMATRWED  114 (354)
T ss_dssp             HHHHHHCCCSEEEECSCGGGHH--HHHHHHHHT--TCEEEECSSSCSSHHH
T ss_pred             HHHhcCCCCCEEEECCCcHHHH--HHHHHHHHC--CCCEEEeCCCcCCHHH
Confidence             3443  799999999965543  333333221  2234444443444443

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=97.30  E-value=0.00027  Score=74.58  Aligned_cols=100  Identities=15%  Similarity=0.139  Sum_probs=65.8

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCC-------cEEEEeCC----hHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcC
Q 004891          308 VRKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVN----SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKM  375 (725)
Q Consensus       308 ~~kIaVIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~----~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~  375 (725)
                      .+||+|+|+ |.+|.+++..|+..|+       +|+++|++    +++++.....+        ......      ....
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl--------~~~~~~------~~~~   70 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEI--------DDCAFP------LLAG   70 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHH--------HTTTCT------TEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHH--------hhhccc------ccCc
Confidence            368999998 9999999999999886       89999999    55443211111        111000      1124


Q ss_pred             cccccCc-ccccCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEe
Q 004891          376 LKGVLDY-SEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILAT  421 (725)
Q Consensus       376 i~~~~~~-~~l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s  421 (725)
                      +..+++. +++++||+||.+..-              +..+.+++.+.+.+++.++++++.
T Consensus        71 i~~~~~~~~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~  131 (329)
T 1b8p_A           71 MTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLV  131 (329)
T ss_dssp             EEEESSHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             EEEecCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence            4545564 779999999988631              223456677778888756665543

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=97.28  E-value=0.004  Score=68.98  Aligned_cols=138  Identities=12%  Similarity=0.082  Sum_probs=93.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHH--HHhhCCCcEE
Q 004891           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVN--LIEDCKKPIV  102 (725)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~kp~I  102 (725)
                      .-++.....+.+..+++.+.+. .+-+|.|.-.     .|+.+.+-.        ..+.. +-+.+.+  .+.. ..|+|
T Consensus       110 gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~dS-----gGaRmqEg~--------~~l~~-~~~i~~~~~~~s~-~iP~I  173 (530)
T 3iav_A          110 GGALGEVYGQKIVKVMDFALKT-GCPVVGINDS-----GGARIQEGV--------ASLGA-YGEIFRRNTHASG-VIPQI  173 (530)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECC-----CSBCGGGTH--------HHHHH-HHHHHHHHHHTTT-TSCEE
T ss_pred             eEeccHHHHHHHHHHHHHHHHc-CCCEEEEEcC-----CCcchhhhh--------hhHHH-HHHHHHHHHHHcC-CCCEE
Confidence            4789999999999999988865 5667777653     344443211        00111 1122211  1222 49999


Q ss_pred             EEEcccccchhhHHhhhcCEEEeeCC-ceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHH-------
Q 004891          103 AAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------  174 (725)
Q Consensus       103 aav~G~a~GgG~~lalacD~~ia~~~-a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA-------  174 (725)
                      ++|.|+|.|||......||++|++++ +.+++.                    |+...+  ..+|+.+++++.       
T Consensus       174 svv~G~~~GG~a~~~al~D~~im~~~~a~i~~a--------------------GP~vi~--~~~ge~v~~e~LGGa~~h~  231 (530)
T 3iav_A          174 SLVVGPCAGGAVYSPAITDFTVMVDQTSHMFIT--------------------GPDVIK--TVTGEDVGFEELGGARTHN  231 (530)
T ss_dssp             EEECSEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------CHHHHH--HHHCCCCCHHHHHBHHHHH
T ss_pred             EEEecCcchHHHHHHHhCCEEEEecCCcEEEec--------------------CHHHHH--HHhCCcCChhhcchHHHHH
Confidence            99999999999998889999999975 888763                    333222  257899999876       


Q ss_pred             HHcCCcceecCcc-hHHHHHHHHHHHH
Q 004891          175 WKLGLIDAVVTSE-ELLKVSRLWALDI  200 (725)
Q Consensus       175 ~~~Glv~~vv~~~-~l~~~a~~~a~~l  200 (725)
                      ...|++|.+++.+ +..+.+.++...+
T Consensus       232 ~~sGv~d~va~de~~a~~~~r~~ls~l  258 (530)
T 3iav_A          232 STSGVAHHMAGDEKDAVEYVKQLLSYL  258 (530)
T ss_dssp             HTSCCCSEEESSHHHHHHHHHHHHHHS
T ss_pred             hccCceeEEecChHHHHHHHHHHHHhc
Confidence            6899999999765 3555555555443

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=97.27  E-value=0.00041  Score=76.65  Aligned_cols=75  Identities=13%  Similarity=0.188  Sum_probs=49.1

Q ss_pred             ceEEEEcCCCCcHH--HHHHHHH----C--CCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccccc
Q 004891          309 RKVAVIGGGLMGSG--IATAHIL----N--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  380 (725)
Q Consensus       309 ~kIaVIG~G~mG~~--iA~~l~~----~--G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~  380 (725)
                      .||+|||+|..|..  +...++.    .  +.+|+++|+++++++.....+++..+..   +.         --.+..++
T Consensus         1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~---~~---------~~~i~~t~   68 (477)
T 3u95_A            1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEEL---NS---------PVKVVKTE   68 (477)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHH---TC---------CCEEEEES
T ss_pred             CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHc---CC---------CeEEEEeC
Confidence            48999999997744  2223332    2  3479999999998776543333322211   10         12466778


Q ss_pred             Cc-ccccCCCEEEEec
Q 004891          381 DY-SEFKDVDMVIEAV  395 (725)
Q Consensus       381 ~~-~~l~~aDlVIeav  395 (725)
                      |. +++++||+||.++
T Consensus        69 d~~eAl~gAD~Vi~~~   84 (477)
T 3u95_A           69 SLDEAIEGADFIINTA   84 (477)
T ss_dssp             CHHHHHTTCSEEEECC
T ss_pred             CHHHHhCCCCEEEECc
Confidence            87 7799999999986

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=97.27  E-value=0.0004  Score=73.69  Aligned_cols=95  Identities=19%  Similarity=0.175  Sum_probs=61.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH--CCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          309 RKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~--~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      ++|+|||+|.||..++..+..  ...+|++||++++++++..+.+..      ..|.           .+...++. +.+
T Consensus       130 ~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~------~~g~-----------~~~~~~~~~eav  192 (350)
T 1x7d_A          130 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKE------YSGL-----------TIRRASSVAEAV  192 (350)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTT------CTTC-----------EEEECSSHHHHH
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHh------ccCc-----------eEEEeCCHHHHH
Confidence            579999999999999988764  346899999999988775432210      0010           12233444 567


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  424 (725)
                      ++||+||.|+|....  ..++.  .+.+++++.|...+|
T Consensus       193 ~~aDiVi~aTps~~~--~pvl~--~~~l~~G~~V~~vgs  227 (350)
T 1x7d_A          193 KGVDIITTVTADKAY--ATIIT--PDMLEPGMHLNAVGG  227 (350)
T ss_dssp             TTCSEEEECCCCSSE--EEEEC--GGGCCTTCEEEECSC
T ss_pred             hcCCEEEEeccCCCC--Cceec--HHHcCCCCEEEECCC
Confidence            899999999985410  01111  145677777655433

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=97.27  E-value=0.00071  Score=71.35  Aligned_cols=100  Identities=10%  Similarity=-0.004  Sum_probs=63.9

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-
Q 004891          306 RGVRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (725)
Q Consensus       306 ~~~~kIaVIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (725)
                      +++.||+|||+|.||..++..+.+. +++|+ ++|+++++++...+.                      .+.....+++ 
T Consensus         3 m~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~----------------------~~~~~~~~~~~   60 (330)
T 3e9m_A            3 LDKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKE----------------------LAIPVAYGSYE   60 (330)
T ss_dssp             CCCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHH----------------------TTCCCCBSSHH
T ss_pred             CCeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHH----------------------cCCCceeCCHH
Confidence            3456899999999999999999984 67776 789999886654321                      1111234555 


Q ss_pred             cccc--CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHH
Q 004891          383 SEFK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  431 (725)
Q Consensus       383 ~~l~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l  431 (725)
                      +.+.  ++|+|++|+|.....  ++.....+.  ...+++....+....+.
T Consensus        61 ~ll~~~~~D~V~i~tp~~~h~--~~~~~al~~--gk~vl~EKP~~~~~~e~  107 (330)
T 3e9m_A           61 ELCKDETIDIIYIPTYNQGHY--SAAKLALSQ--GKPVLLEKPFTLNAAEA  107 (330)
T ss_dssp             HHHHCTTCSEEEECCCGGGHH--HHHHHHHHT--TCCEEECSSCCSSHHHH
T ss_pred             HHhcCCCCCEEEEcCCCHHHH--HHHHHHHHC--CCeEEEeCCCCCCHHHH
Confidence            3344  799999999966543  333333221  12355555445555543

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=97.25  E-value=0.00022  Score=75.24  Aligned_cols=100  Identities=21%  Similarity=0.177  Sum_probs=69.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|||||.|.+|..+|..+..-|.+|+.||+.......             +.+             .. ..++ +.+++
T Consensus       142 ~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~-------------~~~-------------~~-~~~l~ell~~  194 (334)
T 3kb6_A          142 LTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKREDLK-------------EKG-------------CV-YTSLDELLKE  194 (334)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH-------------HTT-------------CE-ECCHHHHHHH
T ss_pred             cEEEEECcchHHHHHHHhhcccCceeeecCCccchhhh-------------hcC-------------ce-ecCHHHHHhh
Confidence            68999999999999999999999999999987543111             111             11 2233 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC---CChHHHhcccC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGEKTS  436 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~  436 (725)
                      ||+|+.++|-..+.+.-+=++..+.++++++++ |++-   +.-..+.+.+.
T Consensus       195 sDivslh~Plt~~T~~li~~~~l~~mk~~a~lI-N~aRG~iVde~aL~~aL~  245 (334)
T 3kb6_A          195 SDVISLHVPYTKETHHMINEERISLMKDGVYLI-NTARGKVVDTDALYRAYQ  245 (334)
T ss_dssp             CSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEE-ECSCGGGBCHHHHHHHHH
T ss_pred             CCEEEEcCCCChhhccCcCHHHHhhcCCCeEEE-ecCccccccHHHHHHHHH
Confidence            999999999666543333345666789999886 5652   33345555554

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=97.20  E-value=0.00074  Score=70.44  Aligned_cols=98  Identities=12%  Similarity=-0.034  Sum_probs=62.9

Q ss_pred             CcceEEEEcCCCCcHH-HHHHHHH-CCCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-
Q 004891          307 GVRKVAVIGGGLMGSG-IATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~-iA~~l~~-~G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (725)
                      ++.||+|||+|.||.. ++..+.+ .+++++ ++|+++++++...+..          |             +...+++ 
T Consensus         5 ~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~----------~-------------~~~~~~~~   61 (308)
T 3uuw_A            5 KNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDY----------R-------------IMPFDSIE   61 (308)
T ss_dssp             CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHH----------T-------------CCBCSCHH
T ss_pred             ccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHc----------C-------------CCCcCCHH
Confidence            4568999999999997 8888876 477877 8999999877653211          1             1124454 


Q ss_pred             ccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHH
Q 004891          383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  431 (725)
Q Consensus       383 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l  431 (725)
                      +.++++|+|++|+|.....  ++.....+.  ...+++....+....+.
T Consensus        62 ~ll~~~D~V~i~tp~~~h~--~~~~~al~~--gk~vl~EKP~~~~~~~~  106 (308)
T 3uuw_A           62 SLAKKCDCIFLHSSTETHY--EIIKILLNL--GVHVYVDKPLASTVSQG  106 (308)
T ss_dssp             HHHTTCSEEEECCCGGGHH--HHHHHHHHT--TCEEEECSSSSSSHHHH
T ss_pred             HHHhcCCEEEEeCCcHhHH--HHHHHHHHC--CCcEEEcCCCCCCHHHH
Confidence            4456899999999965543  444433322  12255544455555443

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.20  E-value=0.0002  Score=77.22  Aligned_cols=86  Identities=21%  Similarity=0.189  Sum_probs=60.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||.|.||.++|..+...|.+|+++|+++.....+.           ..|             .. ..++ +.+++
T Consensus       212 ktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~-----------~~G-------------~~-~~sL~eal~~  266 (436)
T 3h9u_A          212 KTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAA-----------MEG-------------YQ-VLLVEDVVEE  266 (436)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTT-------------CE-ECCHHHHTTT
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHH-----------HhC-------------Ce-ecCHHHHHhh
Confidence            6899999999999999999999999999999987654332           111             11 1233 67889


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (725)
                      ||+||.+....--+.    .+..+.++++++|+..+
T Consensus       267 ADVVilt~gt~~iI~----~e~l~~MK~gAIVINvg  298 (436)
T 3h9u_A          267 AHIFVTTTGNDDIIT----SEHFPRMRDDAIVCNIG  298 (436)
T ss_dssp             CSEEEECSSCSCSBC----TTTGGGCCTTEEEEECS
T ss_pred             CCEEEECCCCcCccC----HHHHhhcCCCcEEEEeC
Confidence            999998654222221    23445678999886433

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=97.17  E-value=0.00031  Score=70.31  Aligned_cols=77  Identities=21%  Similarity=0.175  Sum_probs=52.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcE-EEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc-c
Q 004891          310 KVAVIGGGLMGSGIATAHILNNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF-K  386 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~~V-~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l-~  386 (725)
                      ||+|||+|.||..++..+.+.|++| .+||+++. .+.                               ..+++ +.+ .
T Consensus         2 ~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~-~~~-------------------------------~~~~~~~l~~~   49 (236)
T 2dc1_A            2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGE-HEK-------------------------------MVRGIDEFLQR   49 (236)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-CTT-------------------------------EESSHHHHTTS
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcc-hhh-------------------------------hcCCHHHHhcC
Confidence            7999999999999999999999997 69999852 100                               13344 334 6


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (725)
                      ++|+||+|+|.+  .-.++..   ..+..+..+++.+
T Consensus        50 ~~DvVv~~~~~~--~~~~~~~---~~l~~G~~vv~~~   81 (236)
T 2dc1_A           50 EMDVAVEAASQQ--AVKDYAE---KILKAGIDLIVLS   81 (236)
T ss_dssp             CCSEEEECSCHH--HHHHHHH---HHHHTTCEEEESC
T ss_pred             CCCEEEECCCHH--HHHHHHH---HHHHCCCcEEEEC
Confidence            899999999943  2223332   2334566555443

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=97.12  E-value=0.00083  Score=67.26  Aligned_cols=86  Identities=20%  Similarity=0.141  Sum_probs=54.5

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l  385 (725)
                      .|.||+|+|+|.||..++..+.+.+.+++ ++|++++.                .             ..+..+++++.+
T Consensus         2 ~MmkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~----------------~-------------~gv~v~~dl~~l   52 (243)
T 3qy9_A            2 ASMKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA----------------T-------------TPYQQYQHIADV   52 (243)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-------------------------------CCSCBCSCTTTC
T ss_pred             CceEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc----------------c-------------CCCceeCCHHHH
Confidence            36799999999999999999998877765 47887652                0             123445666443


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL  428 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~  428 (725)
                      .++|+||++..  ++.....   +.  +..+.-+++.|+++..
T Consensus        53 ~~~DVvIDft~--p~a~~~~---~~--l~~g~~vVigTTG~s~   88 (243)
T 3qy9_A           53 KGADVAIDFSN--PNLLFPL---LD--EDFHLPLVVATTGEKE   88 (243)
T ss_dssp             TTCSEEEECSC--HHHHHHH---HT--SCCCCCEEECCCSSHH
T ss_pred             hCCCEEEEeCC--hHHHHHH---HH--HhcCCceEeCCCCCCH
Confidence            39999997764  3322222   22  4455444445555543

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=97.11  E-value=0.00071  Score=72.12  Aligned_cols=151  Identities=12%  Similarity=0.068  Sum_probs=92.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  388 (725)
                      +||+|||.|..|.+-|.+|..+|.+|++--|.....+..     ..+++..+.|             ..+.+-.++++.|
T Consensus        38 K~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~-----~S~~~A~~~G-------------f~v~~~~eA~~~A   99 (491)
T 3ulk_A           38 KKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKR-----ASWRKATENG-------------FKVGTYEELIPQA   99 (491)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTC-----HHHHHHHHTT-------------CEEEEHHHHGGGC
T ss_pred             CEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCccccc-----chHHHHHHCC-------------CEecCHHHHHHhC
Confidence            799999999999999999999999998876633211100     0011112222             3333334788999


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCC--cEEEEecCCCC----------CCCCee
Q 004891          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQD--RIIGAHFFSPA----------HVMPLL  456 (725)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~--r~ig~h~~~p~----------~~~~lv  456 (725)
                      |+|+.-+|+..  -..++++|.++++++..+.- +.++.+..  ..+..|.  .++-+-|-.|-          ...|-+
T Consensus       100 DvV~~L~PD~~--q~~vy~~I~p~lk~G~~L~f-aHGFnI~~--~~i~pp~dvdVimVAPKgpG~~VR~~y~~G~GvP~l  174 (491)
T 3ulk_A          100 DLVINLTPDKQ--HSDVVRTVQPLMKDGAALGY-SHGFNIVE--VGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTL  174 (491)
T ss_dssp             SEEEECSCGGG--HHHHHHHHGGGSCTTCEEEE-SSCHHHHT--TCCCCCTTSEEEEEEESSCHHHHHHHHHTTCCCCEE
T ss_pred             CEEEEeCChhh--HHHHHHHHHhhCCCCCEEEe-cCcccccc--cccccCCCcceEEeCCCCCcHHHHHHHHcCCCCceE
Confidence            99999999654  44778999999999998763 34554432  2222222  23333332221          122322


Q ss_pred             eEe-cCCCCCHHHHHHHHHHHHHcCCe
Q 004891          457 EIV-RTERTSAQVILDLMTVGKIIKKV  482 (725)
Q Consensus       457 eii-~~~~t~~e~~~~~~~l~~~lGk~  482 (725)
                      -.| +-...+..+.+.+..+...+|..
T Consensus       175 iAVhqeqD~sG~a~~~AlayA~aiG~~  201 (491)
T 3ulk_A          175 IAVHPENDPKGEGMAIAKAWAAATGGH  201 (491)
T ss_dssp             EEECGGGCTTSCHHHHHHHHHHHHTGG
T ss_pred             EEEEeCCCCchhHHHHHHHHHHhcCCC
Confidence            233 12233556778888899999864

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=97.10  E-value=0.0014  Score=69.45  Aligned_cols=96  Identities=17%  Similarity=0.197  Sum_probs=63.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (725)
                      +.||+|||+|.||..++..+.+. +++|+ ++|+++++++...+                      ..+ ....+++ +.
T Consensus         4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~----------------------~~g-~~~~~~~~~~   60 (344)
T 3euw_A            4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAE----------------------ANG-AEAVASPDEV   60 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHH----------------------TTT-CEEESSHHHH
T ss_pred             ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHH----------------------HcC-CceeCCHHHH
Confidence            46899999999999999999886 77776 89999988665422                      111 3345555 44


Q ss_pred             cc--CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHH
Q 004891          385 FK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI  430 (725)
Q Consensus       385 l~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~  430 (725)
                      ++  ++|+|++|+|.....  ++.....+.  ...+++....+....+
T Consensus        61 l~~~~~D~V~i~tp~~~h~--~~~~~al~~--gk~v~~EKP~~~~~~~  104 (344)
T 3euw_A           61 FARDDIDGIVIGSPTSTHV--DLITRAVER--GIPALCEKPIDLDIEM  104 (344)
T ss_dssp             TTCSCCCEEEECSCGGGHH--HHHHHHHHT--TCCEEECSCSCSCHHH
T ss_pred             hcCCCCCEEEEeCCchhhH--HHHHHHHHc--CCcEEEECCCCCCHHH
Confidence            55  799999999965553  333333322  1235555444555544

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.10  E-value=0.00029  Score=74.94  Aligned_cols=104  Identities=12%  Similarity=0.098  Sum_probs=63.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHH--------cCC---CCHHHHHHhhcCcc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT--------RGK---LTQDKANNALKMLK  377 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~--------~g~---~~~~~~~~~~~~i~  377 (725)
                      .||+|||+|.||..+|+.+...|.+|+++|+++++++.+.+ +.   .+.+.        .+.   ++.+....      
T Consensus       185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~-lG---a~~~~l~~~~~~~~gya~~~~~~~~~~------  254 (381)
T 3p2y_A          185 ASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRS-VG---AQWLDLGIDAAGEGGYARELSEAERAQ------  254 (381)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHH-TT---CEECCCC-------------CHHHHHH------
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cC---CeEEeccccccccccchhhhhHHHHhh------
Confidence            68999999999999999999999999999999988776532 00   00000        000   01110000      


Q ss_pred             cccCc-ccccCCCEEEEec--cCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891          378 GVLDY-SEFKDVDMVIEAV--IESVPLKQKIFSELEKACPPHCILATNT  423 (725)
Q Consensus       378 ~~~~~-~~l~~aDlVIeav--pe~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (725)
                      ...++ +.++++|+||.++  |....- .-+-++..+.++++.+|+..+
T Consensus       255 ~~~~l~e~l~~aDIVI~tv~iPg~~ap-~Lvt~emv~~MkpGsVIVDvA  302 (381)
T 3p2y_A          255 QQQALEDAITKFDIVITTALVPGRPAP-RLVTAAAATGMQPGSVVVDLA  302 (381)
T ss_dssp             HHHHHHHHHTTCSEEEECCCCTTSCCC-CCBCHHHHHTSCTTCEEEETT
T ss_pred             hHHHHHHHHhcCCEEEECCCCCCcccc-eeecHHHHhcCCCCcEEEEEe
Confidence            01122 5679999999986  421110 001244556678999887643

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.09  E-value=0.00075  Score=70.87  Aligned_cols=70  Identities=17%  Similarity=0.045  Sum_probs=51.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH--CCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          309 RKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~--~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      ++|+|||+|.||..++..++.  ...+|.+|||+++++++..+.+..       .+ +          .+. .+++ +.+
T Consensus       126 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~-------~~-~----------~~~-~~~~~e~v  186 (322)
T 1omo_A          126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCED-------RG-I----------SAS-VQPAEEAS  186 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHH-------TT-C----------CEE-ECCHHHHT
T ss_pred             CEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHh-------cC-c----------eEE-ECCHHHHh
Confidence            589999999999999999987  346899999999998776543211       11 0          122 3444 567


Q ss_pred             cCCCEEEEeccCC
Q 004891          386 KDVDMVIEAVIES  398 (725)
Q Consensus       386 ~~aDlVIeavpe~  398 (725)
                       ++|+||.|+|..
T Consensus       187 -~aDvVi~aTp~~  198 (322)
T 1omo_A          187 -RCDVLVTTTPSR  198 (322)
T ss_dssp             -SSSEEEECCCCS
T ss_pred             -CCCEEEEeeCCC
Confidence             899999999843

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=97.07  E-value=0.0015  Score=70.27  Aligned_cols=85  Identities=21%  Similarity=0.327  Sum_probs=59.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|+|+|.+|..+|..+...|.+|+++|+++.....+.           ..|             .. ..++ +.+++
T Consensus       221 ktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~-----------~~G-------------~~-v~~Leeal~~  275 (435)
T 3gvp_A          221 KQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQAC-----------MDG-------------FR-LVKLNEVIRQ  275 (435)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTT-------------CE-ECCHHHHTTT
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHH-----------HcC-------------CE-eccHHHHHhc
Confidence            6899999999999999999999999999999987644321           111             11 1223 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEec
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATN  422 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~  422 (725)
                      +|+||.| +....+..   .+..+.++++++|+..
T Consensus       276 ADIVi~a-tgt~~lI~---~e~l~~MK~gailINv  306 (435)
T 3gvp_A          276 VDIVITC-TGNKNVVT---REHLDRMKNSCIVCNM  306 (435)
T ss_dssp             CSEEEEC-SSCSCSBC---HHHHHHSCTTEEEEEC
T ss_pred             CCEEEEC-CCCcccCC---HHHHHhcCCCcEEEEe
Confidence            9999997 43222211   2344557899988643

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=97.07  E-value=0.00015  Score=73.42  Aligned_cols=37  Identities=16%  Similarity=0.144  Sum_probs=34.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHH
Q 004891          310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLK  346 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~  346 (725)
                      +|.|||+|.||.+++..|++.|. +|+++||++++++.
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~  147 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKA  147 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHT
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            79999999999999999999999 99999999987554

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.07  E-value=0.0019  Score=59.69  Aligned_cols=38  Identities=8%  Similarity=0.010  Sum_probs=33.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCC-hHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN-SEYLLK  346 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~-~e~~~~  346 (725)
                      ++|.|+|+|.+|..++..|.+.|++|+++|++ ++..+.
T Consensus         4 ~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~   42 (153)
T 1id1_A            4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQ   42 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHH
Confidence            57999999999999999999999999999998 455443

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=97.06  E-value=0.00022  Score=76.48  Aligned_cols=40  Identities=18%  Similarity=0.133  Sum_probs=36.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~  348 (725)
                      .||+|||+|.||..+|+.+...|.+|+++|+++++++.+.
T Consensus       191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~  230 (405)
T 4dio_A          191 AKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVA  230 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence            6899999999999999999999999999999998876653

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=97.06  E-value=0.0004  Score=72.56  Aligned_cols=91  Identities=14%  Similarity=0.164  Sum_probs=59.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~--G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      ++|+|||+|.||..++..|...  ..+|++||++  +.++..+++.+.+      |.           .+... +. +.+
T Consensus       122 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~------g~-----------~~~~~-~~~eav  181 (313)
T 3hdj_A          122 SVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRC------GV-----------PARMA-APADIA  181 (313)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHH------TS-----------CEEEC-CHHHHH
T ss_pred             cEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhc------CC-----------eEEEe-CHHHHH
Confidence            5799999999999999999863  4589999999  4333332221110      10           12223 44 567


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~  425 (725)
                      ++||+||.|+|....    ++.  .+.++++++|....|.
T Consensus       182 ~~aDIVi~aT~s~~p----vl~--~~~l~~G~~V~~vGs~  215 (313)
T 3hdj_A          182 AQADIVVTATRSTTP----LFA--GQALRAGAFVGAIGSS  215 (313)
T ss_dssp             HHCSEEEECCCCSSC----SSC--GGGCCTTCEEEECCCS
T ss_pred             hhCCEEEEccCCCCc----ccC--HHHcCCCcEEEECCCC
Confidence            899999999985422    222  2457788877655443

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=97.06  E-value=0.0097  Score=66.03  Aligned_cols=139  Identities=15%  Similarity=0.102  Sum_probs=93.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEE
Q 004891           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (725)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (725)
                      .-++.....+.+..+++.+.++ .+-+|.|+.     |.|+.+.+-...     ...+...+.... + + .-..|.|++
T Consensus       108 gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~~-----SGGARmqeg~~s-----l~~~~~i~~~~~-~-~-s~~iP~Isv  173 (523)
T 1on3_A          108 GGSAGETQSTKVVETMEQALLT-GTPFLFFYD-----SGGARIQEGIDS-----LSGYGKMFFANV-K-L-SGVVPQIAI  173 (523)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEE-----ECSBCGGGTHHH-----HHHHHHHHHHHH-H-H-TTTSCEEEE
T ss_pred             CCcCcHHHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCCChhhHHHH-----HHHHHHHHHHHH-H-h-cCCCCEEEE
Confidence            4789999999999999988865 566777765     556666542210     001111111111 1 2 345999999


Q ss_pred             EcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHH-----HHH--Hc
Q 004891          105 VEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE-----EGW--KL  177 (725)
Q Consensus       105 v~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~-----eA~--~~  177 (725)
                      +.|+|.||+......||++||.+++.+++.                    |++....  .+|+.++.+     +.+  +.
T Consensus       174 v~gp~~GG~a~s~~l~D~ii~~~~a~i~~a--------------------GP~vI~~--~~ge~~~~e~lggae~h~~~~  231 (523)
T 1on3_A          174 IAGPCAGGASYSPALTDFIIMTKKAHMFIT--------------------GPQVIKS--VTGEDVTADELGGAEAHMAIS  231 (523)
T ss_dssp             EEEEEESGGGHHHHHSSEEEEETTCEEESS--------------------CHHHHHH--HHCCCCCHHHHHSHHHHHHTT
T ss_pred             EcCCCchHHHHHHhhCCeEEEeCCCEEEec--------------------CHHHHHH--HhCCcCChHhcccHHHHhhcc
Confidence            999999999999999999999998888765                    3222221  467788764     223  69


Q ss_pred             CCcceecCcc-hHHHHHHHHHHH
Q 004891          178 GLIDAVVTSE-ELLKVSRLWALD  199 (725)
Q Consensus       178 Glv~~vv~~~-~l~~~a~~~a~~  199 (725)
                      |++|.+++.+ ++.+.+.++...
T Consensus       232 G~vd~vv~d~~~~~~~~r~lL~~  254 (523)
T 1on3_A          232 GNIHFVAEDDDAAELIAKKLLSF  254 (523)
T ss_dssp             CCCSEEESSHHHHHHHHHHHHHT
T ss_pred             CceEEEeCCHHHHHHHHHHHHHh
Confidence            9999999754 455555555443

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=97.03  E-value=0.0015  Score=68.35  Aligned_cols=97  Identities=10%  Similarity=0.012  Sum_probs=59.9

Q ss_pred             CCcceEEEEcCCCCcHH-HHHHHHH-CCCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc
Q 004891          306 RGVRKVAVIGGGLMGSG-IATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (725)
Q Consensus       306 ~~~~kIaVIG~G~mG~~-iA~~l~~-~G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (725)
                      |+..||+|||+|.||.. ++..+.+ .|++|+ ++|+++++++...+..          |             +...+++
T Consensus         3 m~~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~----------g-------------~~~~~~~   59 (319)
T 1tlt_A            3 LKKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW----------R-------------IPYADSL   59 (319)
T ss_dssp             --CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH----------T-------------CCBCSSH
T ss_pred             CCcceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHc----------C-------------CCccCcH
Confidence            34468999999999997 8888876 477876 9999998766543210          1             1123444


Q ss_pred             ccc-cCCCEEEEeccCChHHHHHHHHHHHHhCCCCe-EEEecCCCCChHH
Q 004891          383 SEF-KDVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNI  430 (725)
Q Consensus       383 ~~l-~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~  430 (725)
                      +.+ .++|+|++|+|.....  ++.....   ..+. +++....+....+
T Consensus        60 ~~l~~~~D~V~i~tp~~~h~--~~~~~al---~~G~~v~~eKP~~~~~~~  104 (319)
T 1tlt_A           60 SSLAASCDAVFVHSSTASHF--DVVSTLL---NAGVHVCVDKPLAENLRD  104 (319)
T ss_dssp             HHHHTTCSEEEECSCTTHHH--HHHHHHH---HTTCEEEEESSSCSSHHH
T ss_pred             HHhhcCCCEEEEeCCchhHH--HHHHHHH---HcCCeEEEeCCCCCCHHH
Confidence            433 6799999999965543  3333322   2343 5554444455443

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=97.01  E-value=0.0016  Score=67.97  Aligned_cols=99  Identities=18%  Similarity=0.132  Sum_probs=62.6

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCC--cEEEEeC--ChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccC--
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEV--NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--  381 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~--~V~~~d~--~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~--  381 (725)
                      +||+|+|+ |.+|.+++..|+..|+  ++.++|+  ++++++.....+.+.. .  ..+.         .-.+..+++  
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~-~--~~~~---------~~~i~~~~d~l   68 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDAL-A--GTRS---------DANIYVESDEN   68 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHH-T--TSCC---------CCEEEEEETTC
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhH-H--hcCC---------CeEEEeCCcch
Confidence            38999999 9999999999998886  6999999  7765443222222110 0  0000         002332333  


Q ss_pred             cccccCCCEEEEecc--C------------ChHHHHHHHHHHHHhCCCCeEEEe
Q 004891          382 YSEFKDVDMVIEAVI--E------------SVPLKQKIFSELEKACPPHCILAT  421 (725)
Q Consensus       382 ~~~l~~aDlVIeavp--e------------~~~~k~~v~~~l~~~~~~~~ii~s  421 (725)
                      .+++++||+||.+.-  .            +..+.+.+.+.+.++.  +++++.
T Consensus        69 ~~al~gaD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~--~~~vlv  120 (313)
T 1hye_A           69 LRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC--DTKIFV  120 (313)
T ss_dssp             GGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC--CCEEEE
T ss_pred             HHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC--CeEEEE
Confidence            578999999998872  1            2335556667777777  555543

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.01  E-value=0.00035  Score=71.74  Aligned_cols=71  Identities=13%  Similarity=0.203  Sum_probs=51.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccc-cc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-FK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l~  386 (725)
                      ++|.|+|+|.||.+++..|++.|. +|++++|++++++...+.+.       ..+            .+... +++. ..
T Consensus       127 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~-------~~~------------~~~~~-~~~~l~~  186 (281)
T 3o8q_A          127 ATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVA-------AYG------------EVKAQ-AFEQLKQ  186 (281)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHG-------GGS------------CEEEE-EGGGCCS
T ss_pred             CEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhh-------ccC------------CeeEe-eHHHhcC
Confidence            689999999999999999999997 99999999988766543221       001            11111 2222 27


Q ss_pred             CCCEEEEeccCCh
Q 004891          387 DVDMVIEAVIESV  399 (725)
Q Consensus       387 ~aDlVIeavpe~~  399 (725)
                      ++|+||.|+|-.+
T Consensus       187 ~aDiIInaTp~gm  199 (281)
T 3o8q_A          187 SYDVIINSTSASL  199 (281)
T ss_dssp             CEEEEEECSCCCC
T ss_pred             CCCEEEEcCcCCC
Confidence            8999999998544

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.01  E-value=0.00089  Score=72.08  Aligned_cols=88  Identities=18%  Similarity=0.238  Sum_probs=61.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||.|.+|..+|+.+...|.+|+++|+++.....+.           ..|             ... .++ +.++.
T Consensus       248 KTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~-----------~~G-------------~~v-v~LeElL~~  302 (464)
T 3n58_A          248 KVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAA-----------MDG-------------FEV-VTLDDAAST  302 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH-----------HTT-------------CEE-CCHHHHGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHH-----------hcC-------------cee-ccHHHHHhh
Confidence            6899999999999999999999999999999987543321           111             111 123 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI  426 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~  426 (725)
                      ||+|+.+....--+.    .+....++++++|+ |++..
T Consensus       303 ADIVv~atgt~~lI~----~e~l~~MK~GAILI-NvGRg  336 (464)
T 3n58_A          303 ADIVVTTTGNKDVIT----IDHMRKMKDMCIVG-NIGHF  336 (464)
T ss_dssp             CSEEEECCSSSSSBC----HHHHHHSCTTEEEE-ECSSS
T ss_pred             CCEEEECCCCccccC----HHHHhcCCCCeEEE-EcCCC
Confidence            999999864322222    33445678999886 55543

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=97.00  E-value=0.00033  Score=75.29  Aligned_cols=97  Identities=20%  Similarity=0.167  Sum_probs=61.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||+|.||..+|+.+...|.+|+++|+++++++.+.+.+          |.-.       .-......++ +.+++
T Consensus       169 ~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~----------g~~~-------~~~~~~~~~l~~~l~~  231 (377)
T 2vhw_A          169 ADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEF----------CGRI-------HTRYSSAYELEGAVKR  231 (377)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT----------TTSS-------EEEECCHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhc----------CCee-------EeccCCHHHHHHHHcC
Confidence            6899999999999999999999999999999998876643210          1000       0000000111 34568


Q ss_pred             CCEEEEeccCChH-HHHHHHHHHHHhCCCCeEEEec
Q 004891          388 VDMVIEAVIESVP-LKQKIFSELEKACPPHCILATN  422 (725)
Q Consensus       388 aDlVIeavpe~~~-~k~~v~~~l~~~~~~~~ii~s~  422 (725)
                      +|+||+|++-+.. ...-+.++..+.++++.+|+..
T Consensus       232 aDvVi~~~~~p~~~t~~li~~~~l~~mk~g~~iV~v  267 (377)
T 2vhw_A          232 ADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDI  267 (377)
T ss_dssp             CSEEEECCCCTTSCCCCCBCHHHHTTSCTTCEEEEG
T ss_pred             CCEEEECCCcCCCCCcceecHHHHhcCCCCcEEEEE
Confidence            9999998853221 1111123445567888877644

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=97.00  E-value=0.0011  Score=69.17  Aligned_cols=96  Identities=17%  Similarity=0.216  Sum_probs=61.0

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHHC-C--CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccc---ccC
Q 004891          309 RKVAVIG-GGLMGSGIATAHILN-N--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG---VLD  381 (725)
Q Consensus       309 ~kIaVIG-~G~mG~~iA~~l~~~-G--~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~~  381 (725)
                      +||+||| +|.+|.++|..|+.. +  .+++++|+++ .++...-.+        .....        .-.+..   +++
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl--------~~~~~--------~~~v~~~~~~~~   63 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDL--------SHIPT--------AVKIKGFSGEDA   63 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHH--------HTSCS--------SEEEEEECSSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHh--------hCCCC--------CceEEEecCCCc
Confidence            4899999 899999999999875 5  4899999987 322111011        11100        012222   245


Q ss_pred             cccccCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEec
Q 004891          382 YSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATN  422 (725)
Q Consensus       382 ~~~l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~  422 (725)
                      ++++++||+||.+..-              +..+.+++.+.+.+++ |+++++..
T Consensus        64 ~~~~~~aDivii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~-p~a~vlvv  117 (312)
T 3hhp_A           64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTC-PKACIGII  117 (312)
T ss_dssp             HHHHTTCSEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEEC
T ss_pred             HHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEe
Confidence            6889999999998731              2344555566778876 45555443

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=97.00  E-value=0.014  Score=65.06  Aligned_cols=135  Identities=15%  Similarity=0.061  Sum_probs=90.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHh--hCCCcEE
Q 004891           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE--DCKKPIV  102 (725)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~kp~I  102 (725)
                      --++.....+.+..+++.+.++ .+-+|.|.-     |.|+.+.+-...        +. .+.+.+ ..+.  .-..|.|
T Consensus       121 gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~d-----SGGARmqeg~~s--------l~-~~~~i~-~~~~~~s~~iP~I  184 (548)
T 2bzr_A          121 GGSLGEVYGEKIVKVQELAIKT-GRPLIGIND-----GAGARIQEGVVS--------LG-LYSRIF-RNNILASGVIPQI  184 (548)
T ss_dssp             GGCCCHHHHHHHHHHHHHHHHH-TCCEEEEEC-----CCSCCGGGTTHH--------HH-HHHHHH-HHHHHTTTTSCEE
T ss_pred             cCCCChhHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCCCchhHHHH--------HH-HHHHHH-HHHHHhcCCCcEE
Confidence            4789999999999999988865 566788875     456666432110        01 111222 1122  3349999


Q ss_pred             EEEcccccchhhHHhhhcCEEEeeCC-ceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHH-----HH--
Q 004891          103 AAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE-----EG--  174 (725)
Q Consensus       103 aav~G~a~GgG~~lalacD~~ia~~~-a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~-----eA--  174 (725)
                      +++.|+|.||+......||++||.++ +.+++.                    |+.....  .+|+.++.+     +.  
T Consensus       185 svv~gp~~GG~a~s~al~D~ii~~~~~a~i~~a--------------------GP~vI~~--~~ge~v~~e~lggae~h~  242 (548)
T 2bzr_A          185 SLIMGAAAGGHVYSPALTDFVIMVDQTSQMFIT--------------------GPDVIKT--VTGEEVTMEELGGAHTHM  242 (548)
T ss_dssp             EEECSEEESGGGHHHHHSSEEEEETTTCEEESS--------------------CHHHHHH--HHCCCCCHHHHHBHHHHH
T ss_pred             EEecCCCchHHHHHHHhCCeEEeccCceeEEec--------------------cHHHHHH--HhCCcCChHhcccHHHHh
Confidence            99999999999988889999999987 877754                    3332222  467888865     22  


Q ss_pred             HHcCCcceecCcc-hHHHHHHHHH
Q 004891          175 WKLGLIDAVVTSE-ELLKVSRLWA  197 (725)
Q Consensus       175 ~~~Glv~~vv~~~-~l~~~a~~~a  197 (725)
                      .+.|++|.+++.+ ++.+.+.++.
T Consensus       243 ~~sG~~d~vv~d~~~~~~~~r~ll  266 (548)
T 2bzr_A          243 AKSGTAHYAASGEQDAFDYVRELL  266 (548)
T ss_dssp             HTSSCCSEEESSHHHHHHHHHHHH
T ss_pred             hccCceeEEeCCHHHHHHHHHHHH
Confidence            2699999999754 3444444433

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=96.97  E-value=0.017  Score=64.20  Aligned_cols=141  Identities=14%  Similarity=0.065  Sum_probs=92.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEE
Q 004891           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (725)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (725)
                      --++.+...+.+..+++.+.+. .+-+|.|.-.|+     +.+.+-......  ...+...+ ..+ ..+.....|+|++
T Consensus       134 gGS~g~~~~~Ki~ra~e~A~~~-~lPvI~l~dSgG-----ARl~~q~~~~~~--~~~~~~i~-~~~-~~ls~~giP~Isv  203 (555)
T 3u9r_B          134 GGTYYPLTVKKHLRAQAIALEN-RLPCIYLVDSGG-----ANLPRQDEVFPD--REHFGRIF-FNQ-ANMSARGIPQIAV  203 (555)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECCCC-----BCGGGGGGTSSS--TTSTTHHH-HHH-HHHHHTTCCEEEE
T ss_pred             cCCCCHHHHHHHHHHHHHHHHc-CCCEEEEECCCC-----CCCCCcceeecc--cccHHHHH-HHH-HHHhcCCCCEEEE
Confidence            4789999999999999998875 466777765433     333211110000  01122222 222 2356678999999


Q ss_pred             EcccccchhhHHhhhcCEEEeeC-CceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHH-------HH
Q 004891          105 VEGLALGGGLELAMGCHARIAAP-KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------WK  176 (725)
Q Consensus       105 v~G~a~GgG~~lalacD~~ia~~-~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA-------~~  176 (725)
                      |.|.|.|||......||++|+.+ ++.+++                    -|+...+  ..+|+.+++++.       ..
T Consensus       204 v~G~~~GGga~~~a~~d~vim~e~~a~i~~--------------------aGP~vik--~~~ge~~~~e~LGGa~~h~~~  261 (555)
T 3u9r_B          204 VMGSCTAGGAYVPAMSDETVMVREQATIFL--------------------AGPPLVK--AATGEVVSAEELGGADVHCKV  261 (555)
T ss_dssp             ECSCCBGGGGHHHHTSSEEEEETTTCBCBS--------------------SCHHHHH--HHHCCCCCHHHHHBHHHHHHT
T ss_pred             EecCCCccHHHHHHhCCceEEecCCceEEE--------------------ccHHHHH--HHhcCccChhhccchhhhhhc
Confidence            99999999999999999998875 454443                    1222221  257899999998       88


Q ss_pred             cCCcceecCcchHHHHHHHHHHHH
Q 004891          177 LGLIDAVVTSEELLKVSRLWALDI  200 (725)
Q Consensus       177 ~Glv~~vv~~~~l~~~a~~~a~~l  200 (725)
                      .|++|.+++.++   .+...++++
T Consensus       262 sGv~d~v~~de~---~a~~~~r~~  282 (555)
T 3u9r_B          262 SGVADHYAEDDD---HALAIARRC  282 (555)
T ss_dssp             TCSCSEEESSHH---HHHHHHHHH
T ss_pred             cCceeEEeCCHH---HHHHHHHHH
Confidence            999999997653   344444444

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=96.96  E-value=0.00055  Score=71.01  Aligned_cols=40  Identities=18%  Similarity=0.205  Sum_probs=36.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~  348 (725)
                      ++|.|||+|.||.+++..|++.|. +|+++||++++++...
T Consensus       142 ~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la  182 (297)
T 2egg_A          142 KRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLV  182 (297)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHH
T ss_pred             CEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence            589999999999999999999998 9999999998876543

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=96.96  E-value=0.002  Score=67.89  Aligned_cols=96  Identities=16%  Similarity=0.152  Sum_probs=62.6

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (725)
                      +.||+|||+|.||..++..+.+. +++|+ ++|+++++++...+.                      . .+. .+++ +.
T Consensus         3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~----------------------~-~~~-~~~~~~~   58 (331)
T 4hkt_A            3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGA----------------------Y-GCE-VRTIDAI   58 (331)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHH----------------------T-TCE-ECCHHHH
T ss_pred             ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHH----------------------h-CCC-cCCHHHH
Confidence            46899999999999999999885 77876 799999886654321                      0 122 3444 33


Q ss_pred             cc--CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHH
Q 004891          385 FK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  431 (725)
Q Consensus       385 l~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l  431 (725)
                      ++  ++|+|++|+|.....  ++.....+.  ...+++....+....+.
T Consensus        59 l~~~~~D~V~i~tp~~~h~--~~~~~al~~--gk~v~~EKP~~~~~~~~  103 (331)
T 4hkt_A           59 EAAADIDAVVICTPTDTHA--DLIERFARA--GKAIFCEKPIDLDAERV  103 (331)
T ss_dssp             HHCTTCCEEEECSCGGGHH--HHHHHHHHT--TCEEEECSCSCSSHHHH
T ss_pred             hcCCCCCEEEEeCCchhHH--HHHHHHHHc--CCcEEEecCCCCCHHHH
Confidence            44  799999999965553  333333322  22355554445555543

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=96.94  E-value=0.0022  Score=68.21  Aligned_cols=97  Identities=20%  Similarity=0.141  Sum_probs=63.0

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (725)
                      ..||+|||+|.||..++..+.+. +++|+ ++|+++++++...+..                       .+...+++ +.
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~-----------------------g~~~~~~~~~~   61 (354)
T 3db2_A            5 PVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRY-----------------------NCAGDATMEAL   61 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHH-----------------------TCCCCSSHHHH
T ss_pred             cceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHc-----------------------CCCCcCCHHHH
Confidence            35899999999999999999887 78865 8899998876643210                       12224455 34


Q ss_pred             c--cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHH
Q 004891          385 F--KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  431 (725)
Q Consensus       385 l--~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l  431 (725)
                      +  .++|+|++|+|.....  ++.....+.  ...+++....+....+.
T Consensus        62 l~~~~~D~V~i~tp~~~h~--~~~~~al~~--gk~vl~EKP~~~~~~~~  106 (354)
T 3db2_A           62 LAREDVEMVIITVPNDKHA--EVIEQCARS--GKHIYVEKPISVSLDHA  106 (354)
T ss_dssp             HHCSSCCEEEECSCTTSHH--HHHHHHHHT--TCEEEEESSSCSSHHHH
T ss_pred             hcCCCCCEEEEeCChHHHH--HHHHHHHHc--CCEEEEccCCCCCHHHH
Confidence            4  5799999999976654  333332221  22355555545555443

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=96.93  E-value=0.00086  Score=68.17  Aligned_cols=65  Identities=17%  Similarity=0.137  Sum_probs=49.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  388 (725)
                      ++|.|||+|.||.+++..|++.|.+|++++|++++++... .+          +             +. ..+++.+.++
T Consensus       119 k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~----------~-------------~~-~~~~~~l~~~  173 (269)
T 3phh_A          119 QNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RL----------G-------------CD-CFMEPPKSAF  173 (269)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HH----------T-------------CE-EESSCCSSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HC----------C-------------Ce-EecHHHhccC
Confidence            5799999999999999999999999999999998866542 11          0             11 1123445589


Q ss_pred             CEEEEeccCC
Q 004891          389 DMVIEAVIES  398 (725)
Q Consensus       389 DlVIeavpe~  398 (725)
                      |+||.|+|-.
T Consensus       174 DiVInaTp~G  183 (269)
T 3phh_A          174 DLIINATSAS  183 (269)
T ss_dssp             SEEEECCTTC
T ss_pred             CEEEEcccCC
Confidence            9999999843

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=96.91  E-value=0.00072  Score=72.50  Aligned_cols=97  Identities=15%  Similarity=0.218  Sum_probs=59.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|+|+|.+|..+|+.+...|++|+++|+++++++.+.+.+          +.-       .........+. +.+++
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~----------g~~-------~~~~~~~~~~l~~~~~~  229 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVF----------GGR-------VITLTATEANIKKSVQH  229 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT----------TTS-------EEEEECCHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhc----------Cce-------EEEecCCHHHHHHHHhC
Confidence            6899999999999999999999999999999998876543210          100       00000000111 34568


Q ss_pred             CCEEEEeccCChH-HHHHHHHHHHHhCCCCeEEEec
Q 004891          388 VDMVIEAVIESVP-LKQKIFSELEKACPPHCILATN  422 (725)
Q Consensus       388 aDlVIeavpe~~~-~k~~v~~~l~~~~~~~~ii~s~  422 (725)
                      +|+||+|++-... ...-+.++..+.++++.+|+..
T Consensus       230 ~DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v  265 (369)
T 2eez_A          230 ADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDV  265 (369)
T ss_dssp             CSEEEECCC-------CCSCHHHHTTSCTTCEEEEC
T ss_pred             CCEEEECCCCCccccchhHHHHHHHhhcCCCEEEEE
Confidence            9999999973321 1111124445566777766543

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=96.91  E-value=0.016  Score=64.24  Aligned_cols=140  Identities=16%  Similarity=0.107  Sum_probs=93.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEE
Q 004891           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (725)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (725)
                      .-++.....+.+..+++.+.+. .+-+|.|+.     |.|+.+.+-...     ...+...+.... + + .-..|.|++
T Consensus       104 gGS~g~~~~~Ki~ra~e~A~~~-~~P~I~l~~-----SGGaRmqeg~~s-----l~~~~~i~~~~~-~-~-s~~iP~Isv  169 (522)
T 1x0u_A          104 GGSLGETHANKIVRAYELALKV-GAPVVGIND-----SGGARIQEGALS-----LEGYGAVFKMNV-M-A-SGVIPQITI  169 (522)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEC-----CCSBCGGGTHHH-----HHHHHHHHHHHH-H-H-TTTSCEEEE
T ss_pred             CccccHHHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCCChhHHHHH-----HHHHHHHHHHHH-H-h-CCCCcEEEE
Confidence            4789999999999999988865 567788875     556666543210     011111111111 1 2 345999999


Q ss_pred             EcccccchhhHHhhhcCEEEeeCC-c-eEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHH-----HHH--
Q 004891          105 VEGLALGGGLELAMGCHARIAAPK-T-QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE-----EGW--  175 (725)
Q Consensus       105 v~G~a~GgG~~lalacD~~ia~~~-a-~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~-----eA~--  175 (725)
                      +.|+|.||+......||++|+.++ + .+++.                    |++....  .+|+.++.+     +.+  
T Consensus       170 v~gp~~GG~a~s~~l~D~~i~~~~~a~~i~~a--------------------GP~vI~~--~~ge~~~~e~lggae~~~~  227 (522)
T 1x0u_A          170 MAGPAAGGAVYSPALTDFIIMIKGDAYYMFVT--------------------GPEITKV--VLGEEVSFQDLGGAVVHAT  227 (522)
T ss_dssp             ECSEEEGGGGHHHHHSSEEEEECSTTCEEESS--------------------CHHHHHH--TTCCCCCHHHHHBHHHHHH
T ss_pred             EcCCCchHHHHHHhcCCeEEEecCCccEEEec--------------------CHHHHHH--HhCCcCChhhcchHHHHhh
Confidence            999999999999999999999987 7 77652                    2222211  467888764     222  


Q ss_pred             HcCCcceecCcc-hHHHHHHHHHHHH
Q 004891          176 KLGLIDAVVTSE-ELLKVSRLWALDI  200 (725)
Q Consensus       176 ~~Glv~~vv~~~-~l~~~a~~~a~~l  200 (725)
                      +.|++|.+++.+ ++.+.+.++..-+
T Consensus       228 ~~G~~d~vv~~~~~~~~~~~~ll~~l  253 (522)
T 1x0u_A          228 KSGVVHFMVDSEQEAINLTKRLLSYL  253 (522)
T ss_dssp             TTCCCSEEESCHHHHHHHHHHHHHHS
T ss_pred             cCceeEEEeCCHHHHHHHHHHHHHhc
Confidence            699999999854 5666666655444

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=96.90  E-value=0.002  Score=68.34  Aligned_cols=97  Identities=19%  Similarity=0.216  Sum_probs=62.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      .||+|||+|.||..++..+.+. +++|+ ++|+++++++...+.                      .+.....+++ +.+
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~----------------------~~~~~~~~~~~~ll   60 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEK----------------------LGVEKAYKDPHELI   60 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHH----------------------HTCSEEESSHHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH----------------------hCCCceeCCHHHHh
Confidence            5899999999999999999875 67776 789999887664321                      1111234555 334


Q ss_pred             c--CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHH
Q 004891          386 K--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  431 (725)
Q Consensus       386 ~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l  431 (725)
                      +  ++|+|++|+|.....  ++.....+.  ...+++....+....+.
T Consensus        61 ~~~~~D~V~i~tp~~~h~--~~~~~al~~--gk~v~~EKP~~~~~~e~  104 (344)
T 3ezy_A           61 EDPNVDAVLVCSSTNTHS--ELVIACAKA--KKHVFCEKPLSLNLADV  104 (344)
T ss_dssp             HCTTCCEEEECSCGGGHH--HHHHHHHHT--TCEEEEESCSCSCHHHH
T ss_pred             cCCCCCEEEEcCCCcchH--HHHHHHHhc--CCeEEEECCCCCCHHHH
Confidence            4  799999999965443  333333221  12355554445555543

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=96.89  E-value=0.003  Score=66.23  Aligned_cols=95  Identities=15%  Similarity=0.017  Sum_probs=59.8

Q ss_pred             ceEEEEcCCCCcH-HHHHHHHHC-CCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcc-cccCcccc
Q 004891          309 RKVAVIGGGLMGS-GIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK-GVLDYSEF  385 (725)
Q Consensus       309 ~kIaVIG~G~mG~-~iA~~l~~~-G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~l  385 (725)
                      .||+|||+|.||. .++..+.+. +++|+++|++++++++..+.          -|            .-. ..+..+.+
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~----------~g------------~~~~~~~~~~~l   60 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATR----------YR------------VSATCTDYRDVL   60 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHH----------TT------------CCCCCSSTTGGG
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH----------cC------------CCccccCHHHHh
Confidence            5899999999998 488888764 77888999999887654321          01            101 22333555


Q ss_pred             -cCCCEEEEeccCChHHHHHHHHHHHHhCCCCe-EEEecCCCCChHH
Q 004891          386 -KDVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNI  430 (725)
Q Consensus       386 -~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~  430 (725)
                       .++|+|++|+|....  .++..+..+   .+. +++....+....+
T Consensus        61 ~~~~D~V~i~tp~~~h--~~~~~~al~---~Gk~V~~EKP~~~~~~~  102 (323)
T 1xea_A           61 QYGVDAVMIHAATDVH--STLAAFFLH---LGIPTFVDKPLAASAQE  102 (323)
T ss_dssp             GGCCSEEEECSCGGGH--HHHHHHHHH---TTCCEEEESCSCSSHHH
T ss_pred             hcCCCEEEEECCchhH--HHHHHHHHH---CCCeEEEeCCCcCCHHH
Confidence             689999999995443  233333222   333 4554444455443

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=96.85  E-value=0.0026  Score=67.54  Aligned_cols=99  Identities=16%  Similarity=0.054  Sum_probs=62.3

Q ss_pred             CCCcceEEEEcCCCCcH-HHHHHHHHC-CCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccC
Q 004891          305 PRGVRKVAVIGGGLMGS-GIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (725)
Q Consensus       305 ~~~~~kIaVIG~G~mG~-~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (725)
                      +|+..||+|||+|.||. .++..+.+. +++|+ ++|+++++++...+..                       .+...++
T Consensus        24 ~m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~-----------------------g~~~~~~   80 (350)
T 3rc1_A           24 NANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERF-----------------------GGEPVEG   80 (350)
T ss_dssp             --CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHH-----------------------CSEEEES
T ss_pred             CCCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHc-----------------------CCCCcCC
Confidence            34456899999999998 788888887 77876 8899998866543211                       1222355


Q ss_pred             c-cccc--CCCEEEEeccCChHHHHHHHHHHHHhCCCC-eEEEecCCCCChHHH
Q 004891          382 Y-SEFK--DVDMVIEAVIESVPLKQKIFSELEKACPPH-CILATNTSTIDLNIV  431 (725)
Q Consensus       382 ~-~~l~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~-~ii~s~tS~~~~~~l  431 (725)
                      + +.++  ++|+|++|+|.....  ++.....+   .+ .+++-..-+....+.
T Consensus        81 ~~~ll~~~~~D~V~i~tp~~~h~--~~~~~al~---aGk~Vl~EKP~a~~~~ea  129 (350)
T 3rc1_A           81 YPALLERDDVDAVYVPLPAVLHA--EWIDRALR---AGKHVLAEKPLTTDRPQA  129 (350)
T ss_dssp             HHHHHTCTTCSEEEECCCGGGHH--HHHHHHHH---TTCEEEEESSSCSSHHHH
T ss_pred             HHHHhcCCCCCEEEECCCcHHHH--HHHHHHHH---CCCcEEEeCCCCCCHHHH
Confidence            5 3343  689999999966554  33333332   23 355544445555443

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=96.83  E-value=0.0012  Score=69.62  Aligned_cols=101  Identities=16%  Similarity=0.171  Sum_probs=64.4

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCC-------cEEEEeCChHH--HHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccc
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG  378 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~e~--~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~  378 (725)
                      -||+|+|+ |.+|.+++..|+....       ++.++|+++..  ++-..-.+.       . ...      .....+..
T Consensus        25 vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~-------~-~~~------~~~~~~~~   90 (345)
T 4h7p_A           25 VKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELE-------D-CAF------PLLDKVVV   90 (345)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHH-------H-TTC------TTEEEEEE
T ss_pred             CEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhh-------h-cCc------cCCCcEEE
Confidence            59999997 9999999999998754       79999997643  111110111       0 000      01122333


Q ss_pred             ccCc-ccccCCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891          379 VLDY-SEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNT  423 (725)
Q Consensus       379 ~~~~-~~l~~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (725)
                      +++. +++++||+||.+.  |-            +..+.+.+...|.++++|+++|+..+
T Consensus        91 ~~~~~~a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvs  150 (345)
T 4h7p_A           91 TADPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVG  150 (345)
T ss_dssp             ESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             cCChHHHhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeC
Confidence            4443 7799999999876  21            34455666667888888888665443

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=96.82  E-value=0.0023  Score=66.95  Aligned_cols=93  Identities=20%  Similarity=0.110  Sum_probs=59.8

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHC-CCcE-EEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILN-NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~-G~~V-~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (725)
                      ..||+|||+|.||..++..+.+. ++++ .++|+++++++...+                         .+...+++ +.
T Consensus        10 ~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~-------------------------~~~~~~~~~~~   64 (315)
T 3c1a_A           10 PVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPP-------------------------GCVIESDWRSV   64 (315)
T ss_dssp             CEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCT-------------------------TCEEESSTHHH
T ss_pred             cceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHh-------------------------hCcccCCHHHH
Confidence            46899999999999999999885 6765 499999887543210                         02234455 34


Q ss_pred             cc--CCCEEEEeccCChHHHHHHHHHHHHhCCCCe-EEEecCCCCChHH
Q 004891          385 FK--DVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNI  430 (725)
Q Consensus       385 l~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~  430 (725)
                      ++  ++|+|++|+|.....  ++..+..   ..+. +++....+....+
T Consensus        65 l~~~~~D~V~i~tp~~~h~--~~~~~al---~~Gk~v~~eKP~~~~~~~  108 (315)
T 3c1a_A           65 VSAPEVEAVIIATPPATHA--EITLAAI---ASGKAVLVEKPLTLDLAE  108 (315)
T ss_dssp             HTCTTCCEEEEESCGGGHH--HHHHHHH---HTTCEEEEESSSCSCHHH
T ss_pred             hhCCCCCEEEEeCChHHHH--HHHHHHH---HCCCcEEEcCCCcCCHHH
Confidence            43  799999999955442  3333332   2343 5555444555543

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=96.79  E-value=0.0026  Score=64.87  Aligned_cols=40  Identities=20%  Similarity=0.084  Sum_probs=35.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~  348 (725)
                      ++|.|||+|.||.+++..|++.|. +|++++|+.++++...
T Consensus       120 ~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la  160 (271)
T 1npy_A          120 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLA  160 (271)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence            579999999999999999999997 8999999998866543

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=96.79  E-value=0.0049  Score=65.16  Aligned_cols=97  Identities=13%  Similarity=0.147  Sum_probs=60.2

Q ss_pred             CcceEEEEcCCCCcHHHHHHHH-H-CCCcE-EEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-
Q 004891          307 GVRKVAVIGGGLMGSGIATAHI-L-NNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~-~-~G~~V-~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (725)
                      .+.||+|||+|.||..++..+. + .|++| .++|+++++++...+          +-|            .....+++ 
T Consensus         7 ~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~----------~~g------------~~~~~~~~~   64 (346)
T 3cea_A            7 KPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKN----------ELG------------VETTYTNYK   64 (346)
T ss_dssp             CCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHH----------TTC------------CSEEESCHH
T ss_pred             CcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHH----------HhC------------CCcccCCHH
Confidence            4568999999999999999988 5 47775 588999988665321          011            11223455 


Q ss_pred             cccc--CCCEEEEeccCChHHHHHHHHHHHHhCCCCe-EEEecCCCCChHH
Q 004891          383 SEFK--DVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNI  430 (725)
Q Consensus       383 ~~l~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~  430 (725)
                      +.++  ++|+|++|+|.....  ++.....   ..+. +++....+....+
T Consensus        65 ~~l~~~~~D~V~i~tp~~~h~--~~~~~al---~~G~~v~~eKp~~~~~~~  110 (346)
T 3cea_A           65 DMIDTENIDAIFIVAPTPFHP--EMTIYAM---NAGLNVFCEKPLGLDFNE  110 (346)
T ss_dssp             HHHTTSCCSEEEECSCGGGHH--HHHHHHH---HTTCEEEECSCCCSCHHH
T ss_pred             HHhcCCCCCEEEEeCChHhHH--HHHHHHH---HCCCEEEEcCCCCCCHHH
Confidence            3343  699999999955443  3333322   2344 4443344455544

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=96.78  E-value=0.002  Score=68.51  Aligned_cols=39  Identities=18%  Similarity=0.190  Sum_probs=35.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~  347 (725)
                      ++|+|+|+|.||..+|..|...|.+|+++|+++++++..
T Consensus       174 ktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~  212 (364)
T 1leh_A          174 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAA  212 (364)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            689999999999999999999999999999998876654

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=96.77  E-value=0.0032  Score=67.16  Aligned_cols=97  Identities=18%  Similarity=0.115  Sum_probs=61.4

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-
Q 004891          306 RGVRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (725)
Q Consensus       306 ~~~~kIaVIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (725)
                      |+..||+|||+|.||...+..+.+. +++|+ ++|+++++++.+.           +.             .+...+++ 
T Consensus         3 m~~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~-----------~~-------------g~~~~~~~~   58 (359)
T 3e18_A            3 LKKYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAA-----------QK-------------GLKIYESYE   58 (359)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHH-----------TT-------------TCCBCSCHH
T ss_pred             CCcCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHH-----------hc-------------CCceeCCHH
Confidence            3346899999999999999998876 67775 7799998754321           11             12334555 


Q ss_pred             cccc--CCCEEEEeccCChHHHHHHHHHHHHhCCCC-eEEEecCCCCChHHH
Q 004891          383 SEFK--DVDMVIEAVIESVPLKQKIFSELEKACPPH-CILATNTSTIDLNIV  431 (725)
Q Consensus       383 ~~l~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~-~ii~s~tS~~~~~~l  431 (725)
                      +.++  ++|+|++|+|.....  ++..+..+   .+ .+++-..-+....+.
T Consensus        59 ~ll~~~~~D~V~i~tp~~~h~--~~~~~al~---aGkhVl~EKP~a~~~~ea  105 (359)
T 3e18_A           59 AVLADEKVDAVLIATPNDSHK--ELAISALE---AGKHVVCEKPVTMTSEDL  105 (359)
T ss_dssp             HHHHCTTCCEEEECSCGGGHH--HHHHHHHH---TTCEEEEESSCCSSHHHH
T ss_pred             HHhcCCCCCEEEEcCCcHHHH--HHHHHHHH---CCCCEEeeCCCcCCHHHH
Confidence            3343  799999999965543  33333322   33 355544444554433

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=96.75  E-value=0.0014  Score=67.02  Aligned_cols=40  Identities=15%  Similarity=0.161  Sum_probs=36.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~  348 (725)
                      ++|.|+|+|.||.+++..|++.|.+|+++||+.++++...
T Consensus       120 ~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~  159 (272)
T 1p77_A          120 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELA  159 (272)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            6899999999999999999999999999999998876654

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=96.69  E-value=0.0035  Score=57.17  Aligned_cols=103  Identities=11%  Similarity=0.033  Sum_probs=63.7

Q ss_pred             ceEEEEcC----CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccc
Q 004891          309 RKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (725)
Q Consensus       309 ~kIaVIG~----G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (725)
                      ++|+|||+    |.||..++.+|.+.||+  +|++|+.....                         ....+.+..++++
T Consensus        14 ~~vaVvGas~~~g~~G~~~~~~l~~~G~~--v~~vnp~~~~~-------------------------~i~G~~~~~sl~e   66 (140)
T 1iuk_A           14 KTIAVLGAHKDPSRPAHYVPRYLREQGYR--VLPVNPRFQGE-------------------------ELFGEEAVASLLD   66 (140)
T ss_dssp             CEEEEETCCSSTTSHHHHHHHHHHHTTCE--EEEECGGGTTS-------------------------EETTEECBSSGGG
T ss_pred             CEEEEECCCCCCCChHHHHHHHHHHCCCE--EEEeCCCcccC-------------------------cCCCEEecCCHHH
Confidence            57999999    89999999999999997  66677652100                         0012344455544


Q ss_pred             c-cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccC-CCCcEEE
Q 004891          385 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS-SQDRIIG  443 (725)
Q Consensus       385 l-~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~-~~~r~ig  443 (725)
                      + ..+|+++.++|  .+...++++++.+.-.. .++.. +++. ..++.+... ..-+++|
T Consensus        67 l~~~vDlavi~vp--~~~~~~v~~~~~~~gi~-~i~~~-~g~~-~~~~~~~a~~~Gir~vg  122 (140)
T 1iuk_A           67 LKEPVDILDVFRP--PSALMDHLPEVLALRPG-LVWLQ-SGIR-HPEFEKALKEAGIPVVA  122 (140)
T ss_dssp             CCSCCSEEEECSC--HHHHTTTHHHHHHHCCS-CEEEC-TTCC-CHHHHHHHHHTTCCEEE
T ss_pred             CCCCCCEEEEEeC--HHHHHHHHHHHHHcCCC-EEEEc-CCcC-HHHHHHHHHHcCCEEEc
Confidence            4 56999999999  56666777776554333 45433 3333 334443332 3335554

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=96.65  E-value=0.002  Score=67.80  Aligned_cols=100  Identities=14%  Similarity=0.080  Sum_probs=60.0

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-
Q 004891          306 RGVRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (725)
Q Consensus       306 ~~~~kIaVIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (725)
                      +++.||+|||+|.||..++..+.+. +.+|+ ++|+++++++...+           .           .+.-...+++ 
T Consensus         3 m~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~-----------~-----------~~~~~~~~~~~   60 (329)
T 3evn_A            3 LSKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFAN-----------K-----------YHLPKAYDKLE   60 (329)
T ss_dssp             --CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC--------------C-----------CCCSCEESCHH
T ss_pred             CCceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHH-----------H-----------cCCCcccCCHH
Confidence            4457899999999999999998875 45655 78999887544321           1           1111234555 


Q ss_pred             cccc--CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHH
Q 004891          383 SEFK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  431 (725)
Q Consensus       383 ~~l~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l  431 (725)
                      +.+.  ++|+|++|+|.....  ++.....+.  ...+++-..-+....+.
T Consensus        61 ~ll~~~~~D~V~i~tp~~~h~--~~~~~al~a--Gk~Vl~EKP~a~~~~e~  107 (329)
T 3evn_A           61 DMLADESIDVIYVATINQDHY--KVAKAALLA--GKHVLVEKPFTLTYDQA  107 (329)
T ss_dssp             HHHTCTTCCEEEECSCGGGHH--HHHHHHHHT--TCEEEEESSCCSSHHHH
T ss_pred             HHhcCCCCCEEEECCCcHHHH--HHHHHHHHC--CCeEEEccCCcCCHHHH
Confidence            3444  799999999965543  333333221  22355555445555443

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=96.62  E-value=0.0049  Score=65.21  Aligned_cols=95  Identities=16%  Similarity=0.138  Sum_probs=61.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHH-H-CCCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhc-CcccccCc-c
Q 004891          309 RKVAVIGGGLMGSGIATAHI-L-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALK-MLKGVLDY-S  383 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~-~-~G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~-~i~~~~~~-~  383 (725)
                      .||+|||+|.||..++..+. + .+++|+ ++|+++++++...+.                      .+ .....+++ +
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~----------------------~g~~~~~~~~~~~   60 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQ----------------------YQLNATVYPNDDS   60 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHH----------------------TTCCCEEESSHHH
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHH----------------------hCCCCeeeCCHHH
Confidence            58999999999999999998 4 477766 889999887664321                      11 12345565 3


Q ss_pred             ccc--CCCEEEEeccCChHHHHHHHHHHHHhCCCC-eEEEecCCCCChHH
Q 004891          384 EFK--DVDMVIEAVIESVPLKQKIFSELEKACPPH-CILATNTSTIDLNI  430 (725)
Q Consensus       384 ~l~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~-~ii~s~tS~~~~~~  430 (725)
                      .++  ++|+|++|+|.....  ++.....+   .+ .+++-..-+....+
T Consensus        61 ll~~~~~D~V~i~tp~~~h~--~~~~~al~---~Gk~vl~EKP~a~~~~e  105 (344)
T 3mz0_A           61 LLADENVDAVLVTSWGPAHE--SSVLKAIK---AQKYVFCEKPLATTAEG  105 (344)
T ss_dssp             HHHCTTCCEEEECSCGGGHH--HHHHHHHH---TTCEEEECSCSCSSHHH
T ss_pred             HhcCCCCCEEEECCCchhHH--HHHHHHHH---CCCcEEEcCCCCCCHHH
Confidence            343  599999999965543  33333322   33 35554444555544

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=96.62  E-value=0.0028  Score=64.72  Aligned_cols=40  Identities=13%  Similarity=0.121  Sum_probs=36.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~  348 (725)
                      ++|.|+|+|.||.+++..|++.|.+|+++||++++++...
T Consensus       120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la  159 (271)
T 1nyt_A          120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELA  159 (271)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHH
Confidence            5799999999999999999999999999999998866543

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=96.61  E-value=0.0063  Score=63.90  Aligned_cols=94  Identities=16%  Similarity=0.082  Sum_probs=58.5

Q ss_pred             eEEEEcCCCCcHHH-HHHHHHCCCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          310 KVAVIGGGLMGSGI-ATAHILNNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       310 kIaVIG~G~mG~~i-A~~l~~~G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      ||+|||+|.||..+ +..+.+.|++|+ ++|+++++++...+.          .+            .....+++ +.++
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~----------~g------------~~~~~~~~~~~l~   59 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATE----------NG------------IGKSVTSVEELVG   59 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHH----------TT------------CSCCBSCHHHHHT
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHH----------cC------------CCcccCCHHHHhc
Confidence            79999999999998 778877788865 889999886553221          11            11123444 3343


Q ss_pred             --CCCEEEEeccCChHHHHHHHHHHHHhCCCCe-EEEecCCCCChHH
Q 004891          387 --DVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNI  430 (725)
Q Consensus       387 --~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~  430 (725)
                        ++|+|++|+|....  .++.....   ..+. +++....+....+
T Consensus        60 ~~~~D~V~i~tp~~~h--~~~~~~al---~~Gk~v~~ekP~~~~~~~  101 (332)
T 2glx_A           60 DPDVDAVYVSTTNELH--REQTLAAI---RAGKHVLCEKPLAMTLED  101 (332)
T ss_dssp             CTTCCEEEECSCGGGH--HHHHHHHH---HTTCEEEECSSSCSSHHH
T ss_pred             CCCCCEEEEeCChhHh--HHHHHHHH---HCCCeEEEeCCCcCCHHH
Confidence              59999999995544  23333332   2344 4443334444443

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=96.58  E-value=0.032  Score=61.97  Aligned_cols=163  Identities=13%  Similarity=0.116  Sum_probs=100.5

Q ss_pred             CCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCC
Q 004891           21 INPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCK   98 (725)
Q Consensus        21 ~~p~~--Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   98 (725)
                      |+|..  -+++++..+.+.+.++.+... .+-+|.|.-.++ |..|.+-.          ..........++ ..+....
T Consensus       332 ~d~~~~gG~l~~~~~~K~ar~i~~a~~~-~~Plv~l~ds~G-~~~G~~~E----------~~G~~~~~Ak~l-~~~~~~~  398 (522)
T 1x0u_A          332 NNPEEFGGSIDIDAADKAARFIRFCDAF-NIPLISLVDTPG-YVPGTDQE----------YKGIIRHGAKML-YAFAEAT  398 (522)
T ss_dssp             ECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEECC-BCCSHHHH----------HTTHHHHHHHHH-HHHHHCC
T ss_pred             ECCCccCCCcCHHHHHHHHHHHHHHhhC-CCCEEEEecCCC-CCCchHHH----------HHHHHHHHHHHH-HHHHhCC
Confidence            45542  589999999999999988754 667777764332 33222211          111122333455 5688899


Q ss_pred             CcEEEEEcccccchhhHHhhh----cCEEEeeCCceEeCcccccCCCCCchhhchHhhh-hCH----HHH-HHHHH--cC
Q 004891           99 KPIVAAVEGLALGGGLELAMG----CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL-VGL----SKA-IEMML--LS  166 (725)
Q Consensus        99 kp~Iaav~G~a~GgG~~lala----cD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~-vG~----~~a-~~l~l--~g  166 (725)
                      .|.|+.|-|.|.|||+.....    +|+++|.++|.+++-.       +-|.+..+-+. +-.    ... .++.-  .-
T Consensus       399 vP~Isvi~g~~~GGg~~~~a~~a~~~D~v~a~p~A~i~v~g-------pegaa~Il~r~~i~~~~d~~~~~~~l~~~y~~  471 (522)
T 1x0u_A          399 VPKITVIVRKSYGGAHIAMSIKSLGADLVYAWPTAEIAVTG-------PEGAVRILYRKEIQQASNPDDVLKQRIAEYRK  471 (522)
T ss_dssp             SCEEEEEEEEEEHHHHHHTCCGGGTCSEEEECTTCEEESSC-------HHHHHHHHTSSSSSSSSSSSSSSHHHHHHHHH
T ss_pred             CCEEEEEeCCcccHHHHHhcccccCCCEEEEeCCCEEEecC-------HHHHHHHHhhhhhhcccCHHHHHHHHHHHHHH
Confidence            999999999999998755444    9999999988877532       22222222211 100    000 00110  00


Q ss_pred             CCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhc
Q 004891          167 KSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR  203 (725)
Q Consensus       167 ~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~  203 (725)
                      ..-++..+.+.|+||.|+++.++.+......+.+..+
T Consensus       472 ~~~~~~~~~~~G~iD~II~p~~tR~~L~~~L~~~~~~  508 (522)
T 1x0u_A          472 LFANPYWAAEKGLVDDVIEPKDTRRVIVAGLEMLKTK  508 (522)
T ss_dssp             HHSSSHHHHHTTSSSEECCGGGHHHHHHHHHHHHTTC
T ss_pred             hcCCHHHHHhcCCCcEeECHHHHHHHHHHHHHHHhhc
Confidence            1236678999999999999988877776666665443

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=96.57  E-value=0.0051  Score=65.50  Aligned_cols=99  Identities=15%  Similarity=0.178  Sum_probs=62.6

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHH-H-CCCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhc-CcccccC
Q 004891          306 RGVRKVAVIGGGLMGSGIATAHI-L-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALK-MLKGVLD  381 (725)
Q Consensus       306 ~~~~kIaVIG~G~mG~~iA~~l~-~-~G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~-~i~~~~~  381 (725)
                      |+..||+|||+|.||...+..+. + .+++|+ ++|+++++++...+.                      .+ .....++
T Consensus        21 m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~----------------------~g~~~~~~~~   78 (357)
T 3ec7_A           21 GMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDK----------------------YAIEAKDYND   78 (357)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHH----------------------HTCCCEEESS
T ss_pred             CCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHH----------------------hCCCCeeeCC
Confidence            34468999999999999999998 4 477866 799999887664321                      11 1233455


Q ss_pred             c-cccc--CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHH
Q 004891          382 Y-SEFK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI  430 (725)
Q Consensus       382 ~-~~l~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~  430 (725)
                      + +.++  ++|+|++|+|.....  ++.....+.  ...+++-..-+....+
T Consensus        79 ~~~ll~~~~~D~V~i~tp~~~h~--~~~~~al~a--Gk~Vl~EKPla~~~~e  126 (357)
T 3ec7_A           79 YHDLINDKDVEVVIITASNEAHA--DVAVAALNA--NKYVFCEKPLAVTAAD  126 (357)
T ss_dssp             HHHHHHCTTCCEEEECSCGGGHH--HHHHHHHHT--TCEEEEESSSCSSHHH
T ss_pred             HHHHhcCCCCCEEEEcCCcHHHH--HHHHHHHHC--CCCEEeecCccCCHHH
Confidence            5 3343  689999999965543  443333321  1235554444555544

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=96.54  E-value=0.00038  Score=71.27  Aligned_cols=38  Identities=13%  Similarity=0.117  Sum_probs=34.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLK  346 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~  346 (725)
                      ++|.|||+|.||.+++..|++.|. +|++++|+.++++.
T Consensus       118 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~  156 (277)
T 3don_A          118 AYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNN  156 (277)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTT
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence            579999999999999999999999 99999999877543

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.51  E-value=0.0084  Score=65.01  Aligned_cols=40  Identities=13%  Similarity=0.144  Sum_probs=36.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~  348 (725)
                      ++|.|+|+|.+|..+|..|.+.|++|+++|.|++.++.+.
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~   44 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLR   44 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Confidence            4699999999999999999999999999999999987653

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=96.51  E-value=0.012  Score=53.75  Aligned_cols=80  Identities=14%  Similarity=0.098  Sum_probs=54.8

Q ss_pred             ceEEEEcC----CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccc
Q 004891          309 RKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (725)
Q Consensus       309 ~kIaVIG~----G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (725)
                      ++|+|||+    |.+|..++..|.+.||+  +|++|+.. +.                          ...+....++++
T Consensus        23 ~~iaVVGas~~~g~~G~~~~~~l~~~G~~--v~~Vnp~~-~~--------------------------i~G~~~y~sl~~   73 (144)
T 2d59_A           23 KKIALVGASPKPERDANIVMKYLLEHGYD--VYPVNPKY-EE--------------------------VLGRKCYPSVLD   73 (144)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCE--EEEECTTC-SE--------------------------ETTEECBSSGGG
T ss_pred             CEEEEEccCCCCCchHHHHHHHHHHCCCE--EEEECCCC-Ce--------------------------ECCeeccCCHHH
Confidence            57999999    79999999999999997  55655542 00                          012334445544


Q ss_pred             c-cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEE
Q 004891          385 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  420 (725)
Q Consensus       385 l-~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~  420 (725)
                      + ..+|++|.++|  .+...+++.++.+.- ...++.
T Consensus        74 l~~~vDlvvi~vp--~~~~~~vv~~~~~~g-i~~i~~  107 (144)
T 2d59_A           74 IPDKIEVVDLFVK--PKLTMEYVEQAIKKG-AKVVWF  107 (144)
T ss_dssp             CSSCCSEEEECSC--HHHHHHHHHHHHHHT-CSEEEE
T ss_pred             cCCCCCEEEEEeC--HHHHHHHHHHHHHcC-CCEEEE
Confidence            4 57999999999  566677777765542 335553

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=96.51  E-value=0.004  Score=68.15  Aligned_cols=87  Identities=17%  Similarity=0.184  Sum_probs=60.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  388 (725)
                      ++|.|+|+|.||.++|..|+..|.+|+++|++++..+.+..           .+             ....+..+.+..+
T Consensus       266 KtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~-----------~g-------------~dv~~lee~~~~a  321 (488)
T 3ond_A          266 KVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATM-----------EG-------------LQVLTLEDVVSEA  321 (488)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TT-------------CEECCGGGTTTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH-----------hC-------------CccCCHHHHHHhc
Confidence            67999999999999999999999999999999887655431           11             1112222567889


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (725)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (725)
                      |+|+++....-.+..    +..+.++++.+|+...
T Consensus       322 DvVi~atG~~~vl~~----e~l~~mk~gaiVvNaG  352 (488)
T 3ond_A          322 DIFVTTTGNKDIIML----DHMKKMKNNAIVCNIG  352 (488)
T ss_dssp             SEEEECSSCSCSBCH----HHHTTSCTTEEEEESS
T ss_pred             CEEEeCCCChhhhhH----HHHHhcCCCeEEEEcC
Confidence            999988643222222    2345578888886443

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=96.47  E-value=0.0024  Score=65.60  Aligned_cols=43  Identities=16%  Similarity=0.286  Sum_probs=37.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTI  351 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i  351 (725)
                      +++.|+|+|-+|.+++..|++.|. +|++++|++++++...+.+
T Consensus       128 k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~  171 (283)
T 3jyo_A          128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVI  171 (283)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence            689999999999999999999999 6999999999877665443

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=96.47  E-value=0.0035  Score=66.80  Aligned_cols=98  Identities=11%  Similarity=0.045  Sum_probs=61.0

Q ss_pred             CCcceEEEEcCCCCcHH-HHHHHHHC-CCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc
Q 004891          306 RGVRKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (725)
Q Consensus       306 ~~~~kIaVIG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (725)
                      |+..||+|||+|.||.. ++..+.+. +.+|+ ++|+++++++...+           .           .+.....+++
T Consensus         3 M~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~-----------~-----------~~~~~~~~~~   60 (359)
T 3m2t_A            3 LSLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHR-----------F-----------ISDIPVLDNV   60 (359)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGG-----------T-----------SCSCCEESSH
T ss_pred             CCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHH-----------h-----------cCCCcccCCH
Confidence            34468999999999985 88888775 67876 88999988655321           1           1223445666


Q ss_pred             c-ccc--CCCEEEEeccCChHHHHHHHHHHHHhCCCC-eEEEecCCCCChHH
Q 004891          383 S-EFK--DVDMVIEAVIESVPLKQKIFSELEKACPPH-CILATNTSTIDLNI  430 (725)
Q Consensus       383 ~-~l~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~-~ii~s~tS~~~~~~  430 (725)
                      + .++  +.|+|++|+|....  .++..+..+   .+ .+++-..-+....+
T Consensus        61 ~~ll~~~~vD~V~i~tp~~~H--~~~~~~al~---aGkhVl~EKPla~~~~e  107 (359)
T 3m2t_A           61 PAMLNQVPLDAVVMAGPPQLH--FEMGLLAMS---KGVNVFVEKPPCATLEE  107 (359)
T ss_dssp             HHHHHHSCCSEEEECSCHHHH--HHHHHHHHH---TTCEEEECSCSCSSHHH
T ss_pred             HHHhcCCCCCEEEEcCCcHHH--HHHHHHHHH---CCCeEEEECCCcCCHHH
Confidence            3 343  56999999994433  344443332   33 35554444455443

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.41  E-value=0.0038  Score=62.88  Aligned_cols=33  Identities=15%  Similarity=0.311  Sum_probs=31.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCh
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~  341 (725)
                      ++|.|||+|.+|+.+|..|++.|. +++++|.+.
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            579999999999999999999998 899999997

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=96.38  E-value=0.0056  Score=62.43  Aligned_cols=41  Identities=17%  Similarity=0.168  Sum_probs=36.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK  349 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~  349 (725)
                      +++.|+|+|.+|.+++..|++.|. +|++++|++++++...+
T Consensus       121 k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~  162 (272)
T 3pwz_A          121 RRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRN  162 (272)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHH
T ss_pred             CEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence            689999999999999999999996 99999999988776543

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=96.34  E-value=0.0025  Score=69.11  Aligned_cols=70  Identities=19%  Similarity=0.331  Sum_probs=50.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      ++|+|||+|.||..+++.+...|. +|+++|+++++++...+.+          |.          ..+. ..++ +.+.
T Consensus       168 ~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~----------g~----------~~~~-~~~l~~~l~  226 (404)
T 1gpj_A          168 KTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL----------GG----------EAVR-FDELVDHLA  226 (404)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH----------TC----------EECC-GGGHHHHHH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc----------CC----------ceec-HHhHHHHhc
Confidence            589999999999999999999999 9999999998764332111          10          0011 1122 3457


Q ss_pred             CCCEEEEeccCCh
Q 004891          387 DVDMVIEAVIESV  399 (725)
Q Consensus       387 ~aDlVIeavpe~~  399 (725)
                      ++|+||+|++...
T Consensus       227 ~aDvVi~at~~~~  239 (404)
T 1gpj_A          227 RSDVVVSATAAPH  239 (404)
T ss_dssp             TCSEEEECCSSSS
T ss_pred             CCCEEEEccCCCC
Confidence            8999999997544

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=96.26  E-value=0.063  Score=59.61  Aligned_cols=137  Identities=12%  Similarity=0.120  Sum_probs=87.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEE
Q 004891           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (725)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (725)
                      --++.....+.+.++++.+.+. .+-+|.|.-.     .|+.+.+-...     ...+...+....   ......|+|++
T Consensus       111 gGS~g~~~~~Ki~r~~e~A~~~-~lPvI~l~dS-----gGAR~qeg~~~-----l~g~~~~~~~~~---~~s~~iP~Isv  176 (527)
T 1vrg_A          111 GGSLGEMHAKKIVKLLDLALKM-GIPVIGINDS-----GGARIQEGVDA-----LAGYGEIFLRNT---LASGVVPQITV  176 (527)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEEE-----CSBCGGGTHHH-----HHHHHHHHHHHH---HHTTTSCEEEE
T ss_pred             CccccHHHHHHHHHHHHHHHHc-CCCEEEEECC-----CCCCccchhHH-----HHHHHHHHHHHH---HhCCCCCEEEE
Confidence            4789999999999999988765 4556777543     34444321110     001111111111   23456999999


Q ss_pred             EcccccchhhHHhhhcCEEEeeCC-ceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHH-----HHH--H
Q 004891          105 VEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE-----EGW--K  176 (725)
Q Consensus       105 v~G~a~GgG~~lalacD~~ia~~~-a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~-----eA~--~  176 (725)
                      |.|.|.|||......||++||.++ +.+++                    .|+.....  .+|+.++.+     +.+  +
T Consensus       177 v~Gp~~GG~a~s~al~D~vi~~~~~a~i~~--------------------aGP~vi~~--~~ge~v~~e~lggae~~~~~  234 (527)
T 1vrg_A          177 IAGPCAGGAVYSPALTDFIVMVDQTARMFI--------------------TGPNVIKA--VTGEEISQEDLGGAMVHNQK  234 (527)
T ss_dssp             EEEEEBGGGGHHHHHSSEEEEETTTCBCBS--------------------SCHHHHHH--HHCCCCCHHHHHBHHHHHHT
T ss_pred             EeCCCchHHHHHHHcCCeEEEecCceEEEe--------------------cCHHHHHH--HhCCCCCccccccHHHHhhc
Confidence            999999999988889999999987 66443                    13222221  467777764     222  6


Q ss_pred             cCCcceecCcc-hHHHHHHHHH
Q 004891          177 LGLIDAVVTSE-ELLKVSRLWA  197 (725)
Q Consensus       177 ~Glv~~vv~~~-~l~~~a~~~a  197 (725)
                      .|++|.+++.+ ++.+.+.++.
T Consensus       235 ~G~vd~vv~d~~~~~~~~~~~L  256 (527)
T 1vrg_A          235 SGNAHFLADNDEKAMSLVRTLL  256 (527)
T ss_dssp             SCCCSEEESSHHHHHHHHHHHH
T ss_pred             ccceEEEecCHHHHHHHHHHHH
Confidence            99999999754 4544444443

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=96.23  E-value=0.0063  Score=63.21  Aligned_cols=67  Identities=15%  Similarity=0.125  Sum_probs=43.0

Q ss_pred             cceEEEEcCCCCcHHHHHHHHH-CCCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~-~G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l  385 (725)
                      ..||+|||+|.||..++..+.+ .+++|+ ++|+++++++.              .|.           .....+++...
T Consensus         9 ~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~--------------~g~-----------~~~~~~~l~~~   63 (304)
T 3bio_A            9 KIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF--------------ELQ-----------PFRVVSDIEQL   63 (304)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC---------------------CCT-----------TSCEESSGGGS
T ss_pred             CCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH--------------cCC-----------CcCCHHHHHhC
Confidence            4589999999999999999987 467877 78999876321              110           01112333333


Q ss_pred             cCCCEEEEeccCCh
Q 004891          386 KDVDMVIEAVIESV  399 (725)
Q Consensus       386 ~~aDlVIeavpe~~  399 (725)
                      .++|+||+|+|...
T Consensus        64 ~~~DvViiatp~~~   77 (304)
T 3bio_A           64 ESVDVALVCSPSRE   77 (304)
T ss_dssp             SSCCEEEECSCHHH
T ss_pred             CCCCEEEECCCchh
Confidence            78999999999433

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=96.23  E-value=0.0016  Score=68.45  Aligned_cols=98  Identities=18%  Similarity=0.150  Sum_probs=63.0

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHHCCC--c-----EEEEeCCh--HHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccc
Q 004891          309 RKVAVIG-GGLMGSGIATAHILNNI--Y-----VVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG  378 (725)
Q Consensus       309 ~kIaVIG-~G~mG~~iA~~l~~~G~--~-----V~~~d~~~--e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~  378 (725)
                      .||+|+| +|.+|+++|..|+..|.  +     ++++|+++  +.++.....+.+       .. ..      ....+..
T Consensus         4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~-------~~-~~------~~~~~~~   69 (333)
T 5mdh_A            4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQD-------CA-LP------LLKDVIA   69 (333)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHH-------TC-CT------TEEEEEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHh-------hh-hc------ccCCEEE
Confidence            6899999 79999999999999887  6     99999975  232221111111       00 00      0122333


Q ss_pred             ccC-cccccCCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCeEEE
Q 004891          379 VLD-YSEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILA  420 (725)
Q Consensus       379 ~~~-~~~l~~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~  420 (725)
                      +++ ++++++||+||.+.  |.            +..+.+.+...+.++.+++.+++
T Consensus        70 ~~~~~~~~~daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vi  126 (333)
T 5mdh_A           70 TDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVI  126 (333)
T ss_dssp             ESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             cCCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence            333 47899999999875  21            33456667777888877765343

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.20  E-value=0.0048  Score=65.90  Aligned_cols=38  Identities=34%  Similarity=0.365  Sum_probs=33.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~  347 (725)
                      +||.|||+|.+|+.+|..|++ .++|++.|++.+.++++
T Consensus        17 mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~   54 (365)
T 3abi_A           17 MKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKV   54 (365)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHH
Confidence            589999999999999998865 58999999999887764

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=96.16  E-value=0.0051  Score=62.96  Aligned_cols=39  Identities=15%  Similarity=0.016  Sum_probs=35.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKG  347 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~  347 (725)
                      +++.|+|+|-+|.+++..|++.|. +|++++|+.++++..
T Consensus       123 k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~L  162 (282)
T 3fbt_A          123 NICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEI  162 (282)
T ss_dssp             SEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence            689999999999999999999998 899999999886553

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=96.16  E-value=0.0021  Score=69.51  Aligned_cols=39  Identities=26%  Similarity=0.160  Sum_probs=35.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~  347 (725)
                      .+|+|||+|.+|..+++.+...|.+|+++|++++.++.+
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~  211 (401)
T 1x13_A          173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQV  211 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            589999999999999999999999999999999876654

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.13  E-value=0.011  Score=60.28  Aligned_cols=39  Identities=10%  Similarity=0.100  Sum_probs=35.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHH
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLK  346 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~  346 (725)
                      ++||.|+|+|.+|+.++..|++.|++|++.+|+++..+.
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~   43 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEA   43 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHH
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhh
Confidence            478999999999999999999999999999999876544

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=96.12  E-value=0.0031  Score=67.31  Aligned_cols=98  Identities=17%  Similarity=0.179  Sum_probs=60.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|.|+|+|.+|..+++.+...|.+|+++|+++++++.+.+...    ..+..-..+..             +. +.+.+
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~----~~~~~~~~~~~-------------~~~~~~~~  230 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG----SRVELLYSNSA-------------EIETAVAE  230 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG----GGSEEEECCHH-------------HHHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhC----ceeEeeeCCHH-------------HHHHHHcC
Confidence            78999999999999999999999999999999998776542110    00000000111             11 34568


Q ss_pred             CCEEEEeccCChHHHHH-HHHHHHHhCCCCeEEEecC
Q 004891          388 VDMVIEAVIESVPLKQK-IFSELEKACPPHCILATNT  423 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~-v~~~l~~~~~~~~ii~s~t  423 (725)
                      +|+||+|++-....... +.++..+.++++.+++...
T Consensus       231 ~DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~  267 (361)
T 1pjc_A          231 ADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVA  267 (361)
T ss_dssp             CSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred             CCEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEEe
Confidence            99999999632210000 1123334567777666543

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=96.09  E-value=0.011  Score=62.78  Aligned_cols=107  Identities=14%  Similarity=0.154  Sum_probs=63.0

Q ss_pred             cceEEEEc-CCCCcHHHHHHHHHCCC--c---EEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccc-c
Q 004891          308 VRKVAVIG-GGLMGSGIATAHILNNI--Y---VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-L  380 (725)
Q Consensus       308 ~~kIaVIG-~G~mG~~iA~~l~~~G~--~---V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~  380 (725)
                      ..||+||| +|.+|.++|..++..+.  +   |.++|.+.+..+...+...-  +  +..+..      ..+..+..+ .
T Consensus        32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~am--D--L~h~~~------p~~~~v~i~~~  101 (375)
T 7mdh_A           32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAM--E--LEDSLY------PLLREVSIGID  101 (375)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHH--H--HHTTTC------TTEEEEEEESC
T ss_pred             CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHH--h--HHhhhh------hhcCCcEEecC
Confidence            46899999 79999999999999876  3   88876654432221111100  0  111100      001122333 4


Q ss_pred             CcccccCCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891          381 DYSEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNTS  424 (725)
Q Consensus       381 ~~~~l~~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~tS  424 (725)
                      +++++++||+||.+.  |-            +..+.+.+...+.++..++++++..|.
T Consensus       102 ~y~~~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsN  159 (375)
T 7mdh_A          102 PYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN  159 (375)
T ss_dssp             HHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             CHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            568999999999875  21            223444555567777667787765443

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=96.09  E-value=0.021  Score=60.80  Aligned_cols=99  Identities=12%  Similarity=0.077  Sum_probs=60.3

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHC-CCcE-EEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcc-c
Q 004891          308 VRKVAVIGGGLMGSGIATAHILN-NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-E  384 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~-G~~V-~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~  384 (725)
                      ..||+|||+|.||..++..+.+. ++++ .++|+++++++...+.          .+. .        ......++++ .
T Consensus         6 ~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~----------~~~-~--------~~~~~~~~~~~l   66 (362)
T 1ydw_A            6 QIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATA----------NNY-P--------ESTKIHGSYESL   66 (362)
T ss_dssp             CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHH----------TTC-C--------TTCEEESSHHHH
T ss_pred             ceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHH----------hCC-C--------CCCeeeCCHHHH
Confidence            46899999999999999998875 5665 5889999876554221          110 0        0123345553 3


Q ss_pred             cc--CCCEEEEeccCChHHHHHHHHHHHHhCCCCe-EEEecCCCCChHH
Q 004891          385 FK--DVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNI  430 (725)
Q Consensus       385 l~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~  430 (725)
                      ++  ++|+|++|+|.....  ++..+.   +..+. +++-...+....+
T Consensus        67 l~~~~~D~V~i~tp~~~h~--~~~~~a---l~aGk~V~~EKP~a~~~~e  110 (362)
T 1ydw_A           67 LEDPEIDALYVPLPTSLHV--EWAIKA---AEKGKHILLEKPVAMNVTE  110 (362)
T ss_dssp             HHCTTCCEEEECCCGGGHH--HHHHHH---HTTTCEEEECSSCSSSHHH
T ss_pred             hcCCCCCEEEEcCChHHHH--HHHHHH---HHCCCeEEEecCCcCCHHH
Confidence            43  699999999955543  333332   33444 4443333455443

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=96.08  E-value=0.018  Score=60.61  Aligned_cols=96  Identities=13%  Similarity=0.005  Sum_probs=60.6

Q ss_pred             cceEEEEcCCCCcH-HHHHHHHHCCCcE-EEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cc
Q 004891          308 VRKVAVIGGGLMGS-GIATAHILNNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (725)
Q Consensus       308 ~~kIaVIG~G~mG~-~iA~~l~~~G~~V-~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (725)
                      ..||||||+|.||. .++..+...|++| .++|+++++++...+.                      .+.....+++ +.
T Consensus         4 ~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~----------------------~~~~~~~~~~~~l   61 (336)
T 2p2s_A            4 KIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSL----------------------FPSVPFAASAEQL   61 (336)
T ss_dssp             CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHH----------------------STTCCBCSCHHHH
T ss_pred             ccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHh----------------------cCCCcccCCHHHH
Confidence            45899999999996 6777777788986 5899999876654321                      1123345555 33


Q ss_pred             cc--CCCEEEEeccCChHHHHHHHHHHHHhCCCCe-EEEecCCCCChHH
Q 004891          385 FK--DVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNI  430 (725)
Q Consensus       385 l~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~  430 (725)
                      ++  ++|+|++|+|.....  ++.....   ..+. +++-...+....+
T Consensus        62 l~~~~~D~V~i~tp~~~h~--~~~~~al---~aGkhVl~EKP~a~~~~e  105 (336)
T 2p2s_A           62 ITDASIDLIACAVIPCDRA--ELALRTL---DAGKDFFTAKPPLTTLEQ  105 (336)
T ss_dssp             HTCTTCCEEEECSCGGGHH--HHHHHHH---HTTCEEEECSSCCSCHHH
T ss_pred             hhCCCCCEEEEeCChhhHH--HHHHHHH---HCCCcEEEeCCCCCCHHH
Confidence            43  699999999966553  3333322   2343 5554434455443

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=96.06  E-value=0.0067  Score=62.47  Aligned_cols=74  Identities=16%  Similarity=0.168  Sum_probs=50.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  388 (725)
                      ++|.|+|+|.||.++|..|++.| +|+++||+.++++...+.+....    ...   . ..     .+...+-.+.+.++
T Consensus       129 k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~----~~~---~-~~-----~~d~~~~~~~~~~~  194 (287)
T 1nvt_A          129 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKL----NKK---F-GE-----EVKFSGLDVDLDGV  194 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHH----TCC---H-HH-----HEEEECTTCCCTTC
T ss_pred             CEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhc----ccc---c-ce-----eEEEeeHHHhhCCC
Confidence            57999999999999999999999 99999999988766544332110    000   0 00     01111113567889


Q ss_pred             CEEEEecc
Q 004891          389 DMVIEAVI  396 (725)
Q Consensus       389 DlVIeavp  396 (725)
                      |+||.|++
T Consensus       195 DilVn~ag  202 (287)
T 1nvt_A          195 DIIINATP  202 (287)
T ss_dssp             CEEEECSC
T ss_pred             CEEEECCC
Confidence            99999987

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=96.03  E-value=0.018  Score=62.42  Aligned_cols=153  Identities=17%  Similarity=0.137  Sum_probs=81.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC-CCcE-EEEeCChHHHHHHHHHHHHHHHhhHHcCC---C-CHHHHHHh--hcCccccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILN-NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGK---L-TQDKANNA--LKMLKGVL  380 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~-G~~V-~~~d~~~e~~~~~~~~i~~~l~~~~~~g~---~-~~~~~~~~--~~~i~~~~  380 (725)
                      -||||||+|.||..++..+.+. +.+| .++|+++++++...+...   .   ....   . +..+....  .+....++
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~y---G---~~~~~~~~~~~~~i~~a~~~g~~~v~~   97 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAY---G---DEENAREATTESAMTRAIEAGKIAVTD   97 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHH---S---SSTTEEECSSHHHHHHHHHTTCEEEES
T ss_pred             eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhc---C---CccccccccchhhhhhhhccCCceEEC
Confidence            5799999999999999887754 5554 578999998776543210   0   0000   0 11111111  12344567


Q ss_pred             Ccc-ccc--CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH---HHhcccCCCCcEEEEecCCCCCCCC
Q 004891          381 DYS-EFK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHVMP  454 (725)
Q Consensus       381 ~~~-~l~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~p~~~~~  454 (725)
                      |++ .++  +.|+|++|+|....-..-....+    ..+.=|++........   ++.+.......+             
T Consensus        98 D~eeLL~d~dIDaVviaTp~p~~H~e~a~~AL----~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvv-------------  160 (446)
T 3upl_A           98 DNDLILSNPLIDVIIDATGIPEVGAETGIAAI----RNGKHLVMMNVEADVTIGPYLKAQADKQGVI-------------  160 (446)
T ss_dssp             CHHHHHTCTTCCEEEECSCCHHHHHHHHHHHH----HTTCEEEECCHHHHHHHHHHHHHHHHHHTCC-------------
T ss_pred             CHHHHhcCCCCCEEEEcCCChHHHHHHHHHHH----HcCCcEEecCcccCHHHHHHHHHHHHHhCCe-------------
Confidence            774 343  68999999974321122222223    3333333211222221   222222111111             


Q ss_pred             eeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004891          455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG  487 (725)
Q Consensus       455 lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~  487 (725)
                         +.......+..+..+.++.+.+|..++.++
T Consensus       161 ---l~~~~gdqp~~~~eLv~~a~~~G~~~v~~G  190 (446)
T 3upl_A          161 ---YSLGAGDEPSSCMELIEFVSALGYEVVSAG  190 (446)
T ss_dssp             ---EEECTTSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ---eeecCCcchHHHHHHHHHHHhCCCeEEEec
Confidence               111222347778888899999999999986

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.02  E-value=0.0032  Score=69.15  Aligned_cols=40  Identities=18%  Similarity=0.160  Sum_probs=36.0

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHH
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLK  346 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~  346 (725)
                      .+++|.|+|+|.||..++..|++.|++|+++|+++++++.
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~   41 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKK   41 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHH
Confidence            3578999999999999999999999999999999877654

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=96.02  E-value=0.0035  Score=65.23  Aligned_cols=41  Identities=15%  Similarity=0.251  Sum_probs=35.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC---hHHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN---SEYLLKGIK  349 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~---~e~~~~~~~  349 (725)
                      +++.|+|+|-+|.+++..|++.|. +|++++|+   .++++...+
T Consensus       155 k~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~  199 (315)
T 3tnl_A          155 KKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVE  199 (315)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHH
T ss_pred             CEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHH
Confidence            689999999999999999999999 89999999   776665443

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.01  E-value=0.025  Score=55.56  Aligned_cols=130  Identities=12%  Similarity=0.142  Sum_probs=77.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  388 (725)
                      ++|.|||+|.+|..-+..|.++|.+|++++.+....          +..+.+.+.+.         .+.-.-..+.+.++
T Consensus        32 k~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~----------l~~l~~~~~i~---------~i~~~~~~~dL~~a   92 (223)
T 3dfz_A           32 RSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAE----------INEWEAKGQLR---------VKRKKVGEEDLLNV   92 (223)
T ss_dssp             CCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHH----------HHHHHHTTSCE---------EECSCCCGGGSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHH----------HHHHHHcCCcE---------EEECCCCHhHhCCC
Confidence            689999999999999999999999999999764321          11122223221         11111123678899


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCC--CCCCeeeEecCCCCCH
Q 004891          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTERTSA  466 (725)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~--~~~~lveii~~~~t~~  466 (725)
                      |+||.|. ++..+...+..    .++.+..+  |...-+     +.         ..|+.|.  ..+++.-.|.+.+.+|
T Consensus        93 dLVIaAT-~d~~~N~~I~~----~ak~gi~V--NvvD~p-----~~---------~~f~~Paiv~rg~l~iaIST~G~sP  151 (223)
T 3dfz_A           93 FFIVVAT-NDQAVNKFVKQ----HIKNDQLV--NMASSF-----SD---------GNIQIPAQFSRGRLSLAISTDGASP  151 (223)
T ss_dssp             SEEEECC-CCTHHHHHHHH----HSCTTCEE--EC----------C---------CSEECCEEEEETTEEEEEECTTSCH
T ss_pred             CEEEECC-CCHHHHHHHHH----HHhCCCEE--EEeCCc-----cc---------CeEEEeeEEEeCCEEEEEECCCCCc
Confidence            9999764 55555444433    34433333  222111     00         1122222  2345666677777889


Q ss_pred             HHHHHHHHHHHH
Q 004891          467 QVILDLMTVGKI  478 (725)
Q Consensus       467 e~~~~~~~l~~~  478 (725)
                      .....++.-++.
T Consensus       152 ~la~~iR~~ie~  163 (223)
T 3dfz_A          152 LLTKRIKEDLSS  163 (223)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            988888887765

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=95.99  E-value=0.0083  Score=63.52  Aligned_cols=75  Identities=13%  Similarity=0.128  Sum_probs=51.1

Q ss_pred             CCCcceEEEEcCCCCcHH-HHHHHHHC-CCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccC
Q 004891          305 PRGVRKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (725)
Q Consensus       305 ~~~~~kIaVIG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (725)
                      .++|-||||||+|.||.. .+..+.+. +.+|+ ++|+++++++...++                      .+.-...+|
T Consensus        20 ~~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~----------------------~g~~~~y~d   77 (350)
T 4had_A           20 FQSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADR----------------------FSVPHAFGS   77 (350)
T ss_dssp             --CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHH----------------------HTCSEEESS
T ss_pred             ccCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH----------------------cCCCeeeCC
Confidence            346779999999999975 45666654 66776 789999987665332                      122234566


Q ss_pred             ccc-c--cCCCEEEEeccCChHH
Q 004891          382 YSE-F--KDVDMVIEAVIESVPL  401 (725)
Q Consensus       382 ~~~-l--~~aDlVIeavpe~~~~  401 (725)
                      ++. +  .+.|+|++|+|.....
T Consensus        78 ~~ell~~~~iDaV~I~tP~~~H~  100 (350)
T 4had_A           78 YEEMLASDVIDAVYIPLPTSQHI  100 (350)
T ss_dssp             HHHHHHCSSCSEEEECSCGGGHH
T ss_pred             HHHHhcCCCCCEEEEeCCCchhH
Confidence            643 3  4689999999966554

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=95.98  E-value=0.0092  Score=58.49  Aligned_cols=39  Identities=8%  Similarity=0.251  Sum_probs=34.1

Q ss_pred             cceEEEEcC-CCCcHHHHHHHH-HCCCcEEEEeCChH-HHHH
Q 004891          308 VRKVAVIGG-GLMGSGIATAHI-LNNIYVVLKEVNSE-YLLK  346 (725)
Q Consensus       308 ~~kIaVIG~-G~mG~~iA~~l~-~~G~~V~~~d~~~e-~~~~  346 (725)
                      |++|.|+|+ |.+|..++..|+ +.|++|++.+|+++ .++.
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~   46 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPP   46 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCH
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchh
Confidence            456999995 999999999999 89999999999987 6443

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=95.96  E-value=0.02  Score=60.22  Aligned_cols=97  Identities=11%  Similarity=0.035  Sum_probs=60.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCC---Cc-EEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcc-
Q 004891          309 RKVAVIGGGLMGSGIATAHILNN---IY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-  383 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G---~~-V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-  383 (725)
                      .||||||+|.||..++..+.+.+   ++ |.++|+++++++...+..                      +.-...++++ 
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~----------------------~~~~~~~~~~~   60 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKH----------------------DIPKAYGSYEE   60 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHH----------------------TCSCEESSHHH
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHc----------------------CCCcccCCHHH
Confidence            58999999999999999887654   34 457899998876643211                      1112345553 


Q ss_pred             ccc--CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHH
Q 004891          384 EFK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  431 (725)
Q Consensus       384 ~l~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l  431 (725)
                      .++  ++|+|++|+|.....  ++..+..+.  ...+++-..-+....+.
T Consensus        61 ll~~~~vD~V~i~tp~~~H~--~~~~~al~~--GkhVl~EKP~a~~~~e~  106 (334)
T 3ohs_X           61 LAKDPNVEVAYVGTQHPQHK--AAVMLCLAA--GKAVLCEKPMGVNAAEV  106 (334)
T ss_dssp             HHHCTTCCEEEECCCGGGHH--HHHHHHHHT--TCEEEEESSSSSSHHHH
T ss_pred             HhcCCCCCEEEECCCcHHHH--HHHHHHHhc--CCEEEEECCCCCCHHHH
Confidence            343  699999999966553  333333221  22355554445555443

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=95.86  E-value=0.0042  Score=66.84  Aligned_cols=39  Identities=18%  Similarity=0.139  Sum_probs=35.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~  347 (725)
                      .+|+|||+|.+|...++.+...|.+|+++|+++++++.+
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~  211 (384)
T 1l7d_A          173 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQV  211 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            589999999999999999999999999999998876654

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=95.83  E-value=0.031  Score=61.08  Aligned_cols=102  Identities=12%  Similarity=0.032  Sum_probs=61.0

Q ss_pred             CCcceEEEEcCCCCcH-HHHHHHHHC-CCcE-EEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc
Q 004891          306 RGVRKVAVIGGGLMGS-GIATAHILN-NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (725)
Q Consensus       306 ~~~~kIaVIG~G~mG~-~iA~~l~~~-G~~V-~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (725)
                      +...||+|||+|.||. .++..+.+. +++| .++|+++++++...+.          -| +..       ..+...+++
T Consensus        81 ~~~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~----------~g-~~~-------~~~~~~~~~  142 (433)
T 1h6d_A           81 DRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAE----------YG-VDP-------RKIYDYSNF  142 (433)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHH----------TT-CCG-------GGEECSSSG
T ss_pred             CCceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHH----------hC-CCc-------ccccccCCH
Confidence            3456899999999997 899888775 5675 5899999876654321          11 000       012234555


Q ss_pred             -cccc--CCCEEEEeccCChHHHHHHHHHHHHhCCCCe-EEEecCCCCChHH
Q 004891          383 -SEFK--DVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNI  430 (725)
Q Consensus       383 -~~l~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~  430 (725)
                       +.+.  ++|+|++|+|.....  ++.....   ..+. +++-...+....+
T Consensus       143 ~~ll~~~~vD~V~iatp~~~h~--~~~~~al---~aGk~Vl~EKPla~~~~e  189 (433)
T 1h6d_A          143 DKIAKDPKIDAVYIILPNSLHA--EFAIRAF---KAGKHVMCEKPMATSVAD  189 (433)
T ss_dssp             GGGGGCTTCCEEEECSCGGGHH--HHHHHHH---HTTCEEEECSSCCSSHHH
T ss_pred             HHHhcCCCCCEEEEcCCchhHH--HHHHHHH---HCCCcEEEcCCCCCCHHH
Confidence             3444  799999999965543  3333332   2333 5554334445443

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=95.81  E-value=0.015  Score=63.02  Aligned_cols=43  Identities=21%  Similarity=0.206  Sum_probs=37.1

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCC---CcEEEEeCChHHHHHHHHH
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNN---IYVVLKEVNSEYLLKGIKT  350 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G---~~V~~~d~~~e~~~~~~~~  350 (725)
                      |+||+|+|+|.+|..++..|++.|   .+|+++|+++++++...+.
T Consensus         1 M~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~   46 (405)
T 4ina_A            1 MAKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQS   46 (405)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHH
Confidence            468999999999999999999998   3899999999987765543

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=95.78  E-value=0.01  Score=58.96  Aligned_cols=39  Identities=15%  Similarity=-0.049  Sum_probs=34.6

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~  347 (725)
                      -++|.|+|+|.+|..+|..|.+.|+ |+++|++++.++.+
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~   47 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVL   47 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHH
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHH
Confidence            3589999999999999999999999 99999999886553

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=95.75  E-value=0.047  Score=53.86  Aligned_cols=39  Identities=18%  Similarity=0.035  Sum_probs=35.3

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHH
Q 004891          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK  346 (725)
Q Consensus       308 ~~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~  346 (725)
                      -++|.|.|+ |.+|..++..|++.|++|++.+|+++.++.
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~   60 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPE   60 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHH
T ss_pred             CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHH
Confidence            468999998 999999999999999999999999887654

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=95.73  E-value=0.062  Score=57.10  Aligned_cols=97  Identities=7%  Similarity=0.094  Sum_probs=60.7

Q ss_pred             ceEEEEcCCCCcH-HHHHHHHHCCCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcc-cc
Q 004891          309 RKVAVIGGGLMGS-GIATAHILNNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EF  385 (725)
Q Consensus       309 ~kIaVIG~G~mG~-~iA~~l~~~G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l  385 (725)
                      .||||||+|.+|. .++..+...|.+|+ ++|+++++++...+.                      .+.....++++ .+
T Consensus        27 irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~----------------------~~~~~~~~~~~~ll   84 (361)
T 3u3x_A           27 LRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAV----------------------YADARRIATAEEIL   84 (361)
T ss_dssp             CEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHH----------------------SSSCCEESCHHHHH
T ss_pred             cEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHH----------------------cCCCcccCCHHHHh
Confidence            5899999999995 57777777888855 889999987664321                      12233456663 34


Q ss_pred             c--CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHH
Q 004891          386 K--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  431 (725)
Q Consensus       386 ~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l  431 (725)
                      +  +.|+|++|+|....  .++.....+.  ...+++-..-+....+.
T Consensus        85 ~~~~vD~V~I~tp~~~H--~~~~~~al~a--GkhVl~EKPla~~~~ea  128 (361)
T 3u3x_A           85 EDENIGLIVSAAVSSER--AELAIRAMQH--GKDVLVDKPGMTSFDQL  128 (361)
T ss_dssp             TCTTCCEEEECCCHHHH--HHHHHHHHHT--TCEEEEESCSCSSHHHH
T ss_pred             cCCCCCEEEEeCChHHH--HHHHHHHHHC--CCeEEEeCCCCCCHHHH
Confidence            3  58999999994433  3444433321  22355554445555443

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=95.71  E-value=0.0034  Score=61.58  Aligned_cols=38  Identities=24%  Similarity=0.240  Sum_probs=34.1

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK  346 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~  346 (725)
                      +||.|+|+ |.+|+.++..|++.|++|++.+|+++.++.
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~   39 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAAD   39 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccccc
Confidence            36999998 999999999999999999999999887543

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=95.64  E-value=0.01  Score=63.17  Aligned_cols=70  Identities=16%  Similarity=0.157  Sum_probs=48.1

Q ss_pred             CcceEEEEcCCCCcHH-HHHHHHHC-CCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcc
Q 004891          307 GVRKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (725)
                      +..||||||+|.||.. .+..+.+. +++|+ ++|++++++.+                         ........++++
T Consensus         4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-------------------------~~~~~~~~~~~~   58 (358)
T 3gdo_A            4 DTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKR-------------------------DFPDAEVVHELE   58 (358)
T ss_dssp             TCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHH-------------------------HCTTSEEESSTH
T ss_pred             CcceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh-------------------------hCCCCceECCHH
Confidence            4468999999999997 56666554 67765 78999865221                         011234456663


Q ss_pred             -ccc--CCCEEEEeccCChHH
Q 004891          384 -EFK--DVDMVIEAVIESVPL  401 (725)
Q Consensus       384 -~l~--~aDlVIeavpe~~~~  401 (725)
                       .++  ++|+|++|+|.....
T Consensus        59 ~ll~~~~vD~V~i~tp~~~H~   79 (358)
T 3gdo_A           59 EITNDPAIELVIVTTPSGLHY   79 (358)
T ss_dssp             HHHTCTTCCEEEECSCTTTHH
T ss_pred             HHhcCCCCCEEEEcCCcHHHH
Confidence             344  799999999976654

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=95.59  E-value=0.0096  Score=63.50  Aligned_cols=70  Identities=19%  Similarity=0.227  Sum_probs=47.9

Q ss_pred             CcceEEEEcCCCCcHH-HHHHHHHC-CCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-
Q 004891          307 GVRKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (725)
                      ++.||+|||+|.||.. .+..+.+. +++|+ ++|+++++++..                         .......+++ 
T Consensus         6 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~-------------------------~~~~~~~~~~~   60 (364)
T 3e82_A            6 NTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRD-------------------------LPDVTVIASPE   60 (364)
T ss_dssp             -CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHHH-------------------------CTTSEEESCHH
T ss_pred             CcceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhh-------------------------CCCCcEECCHH
Confidence            3468999999999997 56666654 77775 889998764310                         1123345566 


Q ss_pred             cccc--CCCEEEEeccCChHH
Q 004891          383 SEFK--DVDMVIEAVIESVPL  401 (725)
Q Consensus       383 ~~l~--~aDlVIeavpe~~~~  401 (725)
                      +.++  +.|+|++|+|.....
T Consensus        61 ~ll~~~~~D~V~i~tp~~~H~   81 (364)
T 3e82_A           61 AAVQHPDVDLVVIASPNATHA   81 (364)
T ss_dssp             HHHTCTTCSEEEECSCGGGHH
T ss_pred             HHhcCCCCCEEEEeCChHHHH
Confidence            3344  799999999965554

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=95.56  E-value=0.0087  Score=65.94  Aligned_cols=41  Identities=15%  Similarity=0.137  Sum_probs=36.0

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHC-CCcEEEEeCChHHHHHH
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKG  347 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~-G~~V~~~d~~~e~~~~~  347 (725)
                      .+++|.|+|+|.+|.+++..|++. |++|+++||++++++..
T Consensus        22 ~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~l   63 (467)
T 2axq_A           22 MGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQAL   63 (467)
T ss_dssp             -CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHH
T ss_pred             CCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHH
Confidence            457899999999999999999998 78999999998876653

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=95.51  E-value=0.015  Score=60.31  Aligned_cols=40  Identities=15%  Similarity=0.199  Sum_probs=35.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC---hHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN---SEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~---~e~~~~~~  348 (725)
                      +++.|+|+|-+|.+++..|++.|. +|++++|+   .++++...
T Consensus       149 k~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la  192 (312)
T 3t4e_A          149 KTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFA  192 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHH
Confidence            689999999999999999999998 89999999   66655543

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=95.49  E-value=0.011  Score=60.47  Aligned_cols=74  Identities=15%  Similarity=0.152  Sum_probs=54.1

Q ss_pred             ceEEEEcCCC-CcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~-mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      +++.|||.|. +|.++|..|.+.|..|+++++....++.                                   .+.+++
T Consensus       166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~l-----------------------------------~~~~~~  210 (300)
T 4a26_A          166 KRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTEDM-----------------------------------IDYLRT  210 (300)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHHH-----------------------------------HHHHHT
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCchh-----------------------------------hhhhcc
Confidence            6899999865 8999999999999999999984433220                                   023578


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  424 (725)
                      ||+||.+++-..-++.       +.++++++|++..+
T Consensus       211 ADIVI~Avg~p~~I~~-------~~vk~GavVIDvgi  240 (300)
T 4a26_A          211 ADIVIAAMGQPGYVKG-------EWIKEGAAVVDVGT  240 (300)
T ss_dssp             CSEEEECSCCTTCBCG-------GGSCTTCEEEECCC
T ss_pred             CCEEEECCCCCCCCcH-------HhcCCCcEEEEEec
Confidence            9999999974322322       34688998886544

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.48  E-value=0.0088  Score=65.88  Aligned_cols=40  Identities=18%  Similarity=0.297  Sum_probs=37.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~  348 (725)
                      +||-|+|+|.+|..+|..|...|++|+++|.|++.++.+.
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~   43 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQ   43 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Confidence            5899999999999999999999999999999999987654

>2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A*

Probab=95.48  E-value=0.13  Score=51.18  Aligned_cols=109  Identities=18%  Similarity=0.170  Sum_probs=76.7

Q ss_pred             ccccc-CcccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcc---cCCC-CcEEEEecCCCC
Q 004891          376 LKGVL-DYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEK---TSSQ-DRIIGAHFFSPA  450 (725)
Q Consensus       376 i~~~~-~~~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~---~~~~-~r~ig~h~~~p~  450 (725)
                      +..++ |.++++++|++|.-.|..- ..-.+.+++.++++.++|| +||.+++...+...   +.+. -.+..+||-.-|
T Consensus       129 VkVtsDD~EAvk~AEi~IlftPfG~-~t~~Iakkii~~lpEgAII-~nTCTipp~~ly~~le~l~R~DvgIsS~HPaaVP  206 (358)
T 2b0j_A          129 LKVTSDDREAVEGADIVITWLPKGN-KQPDIIKKFADAIPEGAIV-THACTIPTTKFAKIFKDLGREDLNITSYHPGCVP  206 (358)
T ss_dssp             CEEESCHHHHHTTCSEEEECCTTCT-THHHHHHHHGGGSCTTCEE-EECSSSCHHHHHHHHHHTTCTTSEEEECBCSSCT
T ss_pred             cEeecchHHHhcCCCEEEEecCCCC-CcHHHHHHHHhhCcCCCEE-ecccCCCHHHHHHHHHHhCcccCCeeccCCCCCC
Confidence            44444 4589999999999998533 3447889999999999988 56778877655443   3332 356777775433


Q ss_pred             CCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004891          451 HVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG  487 (725)
Q Consensus       451 ~~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~  487 (725)
                      .. ..-....-...++|.++++..+.+..|+.++++.
T Consensus       207 gt-~Gq~~~g~~yAtEEqIeklveLaksa~k~ay~vP  242 (358)
T 2b0j_A          207 EM-KGQVYIAEGYASEEAVNKLYEIGKIARGKAFKMP  242 (358)
T ss_dssp             TT-CCCEEEEESSSCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred             CC-CCccccccccCCHHHHHHHHHHHHHhCCCeEecc
Confidence            22 2222334445689999999999999999999873

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=95.47  E-value=0.13  Score=57.10  Aligned_cols=163  Identities=12%  Similarity=0.080  Sum_probs=100.6

Q ss_pred             CCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCC
Q 004891           21 INPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCK   98 (725)
Q Consensus        21 ~~p~~--Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   98 (725)
                      |+|..  -.++++-.....+.++.++. ..+-+|.|-=.+ .|..|.+-.+          ......+..++ ..+....
T Consensus       337 ~~~~~~~G~~~~~~~~Kaar~i~~a~~-~~~Plv~lvDtp-G~~~G~~~E~----------~g~~~~~A~~~-~a~~~~~  403 (527)
T 1vrg_A          337 NQPSVLAGVLDIDSSDKAARFIRFLDA-FNIPILTFVDTP-GYLPGVAQEH----------GGIIRHGAKLL-YAYSEAT  403 (527)
T ss_dssp             ECTTSGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEEC-CBCCCHHHHH----------TTHHHHHHHHH-HHHHHCC
T ss_pred             EcCcccCCCCCHHHHHHHHHHHHHHhh-cCCCeEEEecCC-CCcCchhhHH----------hHHHHHHHHHH-HHHhcCC
Confidence            44543  57999999999999988864 456666664222 2443332111          11223344555 5688899


Q ss_pred             CcEEEEEcccccchhhHHhhh----cCEEEeeCCceEeCcccccCCCCCchhhchHhhhh-----CHHHHHH-HHH--cC
Q 004891           99 KPIVAAVEGLALGGGLELAMG----CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV-----GLSKAIE-MML--LS  166 (725)
Q Consensus        99 kp~Iaav~G~a~GgG~~lala----cD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~v-----G~~~a~~-l~l--~g  166 (725)
                      .|+|+.|-|.|.|||+.-...    +|+++|.+++.++       ++++-|.+..+-+.-     -....++ +.-  .-
T Consensus       404 vP~isvI~g~~~gGg~~am~~~~~~~d~~~a~p~a~~~-------Vm~pegaa~Il~r~~~~~~~d~~~~~~~~~~~y~~  476 (527)
T 1vrg_A          404 VPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIA-------VMGPEGAANIIFKREIEASSNPEETRRKLIEEYKQ  476 (527)
T ss_dssp             SCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCcccHHHHHhcCCCCCCCEEEEcCCCeEE-------ecCHHHHHHHHhhhhhhcccCHHHHHHHHHHHHHH
Confidence            999999999999887744433    8988887777665       444444444333321     1111111 221  11


Q ss_pred             CCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhc
Q 004891          167 KSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR  203 (725)
Q Consensus       167 ~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~  203 (725)
                      +.-++..+.+.|+||+|+++.++........+.+..+
T Consensus       477 ~~~~p~~~~~~g~iD~II~p~~tR~~l~~~L~~l~~~  513 (527)
T 1vrg_A          477 QFANPYIAASRGYVDMVIDPRETRKYIMRALEVCETK  513 (527)
T ss_dssp             HTSSHHHHHHTTSSSEECCGGGHHHHHHHHHHHHTTC
T ss_pred             hhCCHHHHHHcCCCCeeeCHHHHHHHHHHHHHHHhcC
Confidence            2357788999999999999988777666666555443

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=95.45  E-value=0.018  Score=55.99  Aligned_cols=38  Identities=24%  Similarity=0.218  Sum_probs=33.9

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK  346 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~  346 (725)
                      +||.|+|+ |.+|+.++..|++.|++|++++|+++.++.
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~   39 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQ   39 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHH
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhh
Confidence            37999996 999999999999999999999999877543

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=95.43  E-value=0.21  Score=55.77  Aligned_cols=162  Identities=12%  Similarity=-0.017  Sum_probs=92.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEE
Q 004891           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (725)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (725)
                      --++.+...+.+.++++.+.+. .+-+|.|.-.|+     +.+.+-..... . ...+...+ ..+ ..+.....|+|++
T Consensus       119 gGS~g~~~~~Ki~Ra~e~A~~~-~lPvI~l~dSgG-----Arl~~qe~~~~-~-l~~~g~if-~~~-~~ls~~~iP~Isv  188 (588)
T 3gf3_A          119 AGAWVPGQAENLIRCSDAAKMM-HLPLIYLLNCSG-----VEFPNQDKVYP-N-RRGGGTPF-FRN-SELNQLGIPVIVG  188 (588)
T ss_dssp             GGCBCTTHHHHHHHHHHHHHHH-TCCEEEEECCCC-----BCGGGHHHHSS-S-TTSTTHHH-HHH-HHHHHTTCCEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEcCCC-----cCccccccccc-c-hhhHHHHH-HHH-HHHhcCCCCEEEE
Confidence            4788888999999999988765 466777765443     33321111000 0 11122222 222 2355678999999


Q ss_pred             EcccccchhhHHhhhcCEEEeeCCceEeCccccc--CCCCCchhhchHhhh---hCHHHHHHHHHcCCCCCHHHHH--Hc
Q 004891          105 VEGLALGGGLELAMGCHARIAAPKTQLGLPELTL--GVIPGFGGTQRLPRL---VGLSKAIEMMLLSKSITSEEGW--KL  177 (725)
Q Consensus       105 v~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~--Gl~p~~g~~~~l~r~---vG~~~a~~l~l~g~~~~a~eA~--~~  177 (725)
                      |.|.|.|||...++++|++++.+++.+++....+  |+-|.+  . ..+.-   +......+-..+.+.+...+.+  ..
T Consensus       189 v~Gp~~gGgAy~a~~~~vim~~~~a~i~~aGP~vI~~~~p~g--~-~~~~~~~~~~~~~~ge~~vs~eeLGGa~~h~~~s  265 (588)
T 3gf3_A          189 IYGTNPAGGGYHSISPTILIAHQDANMAVGGAGILSGMNPKG--Y-IDDEAAEQIIAAQIENSKLKVPAPGSVPIHYDET  265 (588)
T ss_dssp             ECSEEETHHHHHHHSSSEEEEETTCEEESSCCC------------------CHHHHHHHHHHHHTTCCCTTBHHHHTTTS
T ss_pred             EeCCCCchhhhHhhCCeEEEEECCcEEEecChhhhcccCccc--c-ccccchhhhhhhhccccccChhhccchhhhcccc
Confidence            9999999988778888988888999888753331  111100  0 01100   0011111111466667777766  59


Q ss_pred             CCcceecCcchHHHHHHHHHHHHHh
Q 004891          178 GLIDAVVTSEELLKVSRLWALDIAA  202 (725)
Q Consensus       178 Glv~~vv~~~~l~~~a~~~a~~la~  202 (725)
                      |++|.+++.++   .+.+.++++.+
T Consensus       266 Gv~d~~a~de~---~al~~~r~~ls  287 (588)
T 3gf3_A          266 GFFREVYQNDL---GVIDGIKKYIS  287 (588)
T ss_dssp             CCSCEEESSHH---HHHHHHHHHHH
T ss_pred             ccceEEeCCHH---HHHHHHHHHHH
Confidence            99999997653   34444444433

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=95.43  E-value=0.0078  Score=60.73  Aligned_cols=72  Identities=14%  Similarity=0.166  Sum_probs=53.6

Q ss_pred             ceEEEEcCC-CCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G-~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      +++.|||.| .+|.++|..|.+.|..|+++++....++                                     +.+++
T Consensus       151 k~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~~L~-------------------------------------~~~~~  193 (276)
T 3ngx_A          151 NTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIG-------------------------------------SMTRS  193 (276)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHH-------------------------------------HHHHH
T ss_pred             CEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCcccHH-------------------------------------Hhhcc
Confidence            589999987 5899999999999999999986432221                                     34577


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  424 (725)
                      ||+||.+++-..-++.       ++++++++|++..+
T Consensus       194 ADIVI~Avg~p~~I~~-------~~vk~GavVIDvgi  223 (276)
T 3ngx_A          194 SKIVVVAVGRPGFLNR-------EMVTPGSVVIDVGI  223 (276)
T ss_dssp             SSEEEECSSCTTCBCG-------GGCCTTCEEEECCC
T ss_pred             CCEEEECCCCCccccH-------hhccCCcEEEEecc
Confidence            9999999974322322       34688998886544

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=95.43  E-value=0.0097  Score=62.27  Aligned_cols=65  Identities=15%  Similarity=0.192  Sum_probs=46.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC-CCcE-EEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcc-cc
Q 004891          309 RKVAVIGGGLMGSGIATAHILN-NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EF  385 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~-G~~V-~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l  385 (725)
                      .||+|||+|.||..++..+.+. +.++ .++|++++.  +.            .            . .+..+++++ .+
T Consensus         4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~--~~------------~------------~-gv~~~~d~~~ll   56 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL--DT------------K------------T-PVFDVADVDKHA   56 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC--SS------------S------------S-CEEEGGGGGGTT
T ss_pred             CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH--hh------------c------------C-CCceeCCHHHHh
Confidence            5899999999999999999876 5664 588988643  10            0            0 123345553 34


Q ss_pred             cCCCEEEEeccCChH
Q 004891          386 KDVDMVIEAVIESVP  400 (725)
Q Consensus       386 ~~aDlVIeavpe~~~  400 (725)
                      .++|+||+|+|....
T Consensus        57 ~~~DvViiatp~~~h   71 (320)
T 1f06_A           57 DDVDVLFLCMGSATD   71 (320)
T ss_dssp             TTCSEEEECSCTTTH
T ss_pred             cCCCEEEEcCCcHHH
Confidence            789999999986554

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=95.39  E-value=0.039  Score=55.43  Aligned_cols=33  Identities=24%  Similarity=0.283  Sum_probs=30.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCh
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~  341 (725)
                      .+|.|||+|.+|+.++..|++.|. +++++|.+.
T Consensus        29 ~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             CcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            479999999999999999999998 789998763

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=95.38  E-value=0.049  Score=59.64  Aligned_cols=78  Identities=18%  Similarity=0.201  Sum_probs=51.9

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHC-CCcE-EEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccccc---
Q 004891          306 RGVRKVAVIGGGLMGSGIATAHILN-NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL---  380 (725)
Q Consensus       306 ~~~~kIaVIG~G~mG~~iA~~l~~~-G~~V-~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~---  380 (725)
                      +...||+|||+|.||...+..+.+. |++| .++|+++++++...+.+.       +.|.          ......+   
T Consensus        18 ~~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~-------~~g~----------~~~~~~~~~~   80 (444)
T 2ixa_A           18 PKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILK-------KNGK----------KPAKVFGNGN   80 (444)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHH-------HTTC----------CCCEEECSST
T ss_pred             CCCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHH-------hcCC----------CCCceeccCC
Confidence            3446899999999999999888874 6776 488999998776543211       1110          0122233   


Q ss_pred             -Cc-cccc--CCCEEEEeccCChH
Q 004891          381 -DY-SEFK--DVDMVIEAVIESVP  400 (725)
Q Consensus       381 -~~-~~l~--~aDlVIeavpe~~~  400 (725)
                       ++ +.++  ++|+|++|+|....
T Consensus        81 ~~~~~ll~~~~vD~V~i~tp~~~h  104 (444)
T 2ixa_A           81 DDYKNMLKDKNIDAVFVSSPWEWH  104 (444)
T ss_dssp             TTHHHHTTCTTCCEEEECCCGGGH
T ss_pred             CCHHHHhcCCCCCEEEEcCCcHHH
Confidence             55 3444  69999999996554

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=95.20  E-value=0.017  Score=59.00  Aligned_cols=72  Identities=19%  Similarity=0.200  Sum_probs=53.9

Q ss_pred             ceEEEEcCCC-CcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~-mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      ++|.|||.|. +|..+|..|...|..|++++++...+.                                     +.+++
T Consensus       166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~-------------------------------------~~~~~  208 (301)
T 1a4i_A          166 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLD-------------------------------------EEVNK  208 (301)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH-------------------------------------HHHTT
T ss_pred             CEEEEECCCchHHHHHHHHHHhCCCeEEEEECCcccHH-------------------------------------HHhcc
Confidence            6899999995 799999999999999999985432211                                     35688


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  424 (725)
                      ||+||.+++-.--++.       +.++++++|++...
T Consensus       209 ADIVI~Avg~p~~I~~-------~~vk~GavVIDVgi  238 (301)
T 1a4i_A          209 GDILVVATGQPEMVKG-------EWIKPGAIVIDCGI  238 (301)
T ss_dssp             CSEEEECCCCTTCBCG-------GGSCTTCEEEECCC
T ss_pred             CCEEEECCCCcccCCH-------HHcCCCcEEEEccC
Confidence            9999999974322332       23678998886544

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=95.19  E-value=0.025  Score=59.31  Aligned_cols=33  Identities=24%  Similarity=0.354  Sum_probs=30.3

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCC-------cEEEEeCCh
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNS  341 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~  341 (725)
                      +||.|+|+ |.+|+.++..|+..|+       +|+++|+++
T Consensus         5 mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~   45 (327)
T 1y7t_A            5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQ   45 (327)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGG
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCC
Confidence            48999997 9999999999999996       899999975

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=95.18  E-value=0.018  Score=61.37  Aligned_cols=97  Identities=11%  Similarity=0.051  Sum_probs=58.5

Q ss_pred             CCcceEEEEcCCCCcHH-HHHHHHHC-CCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc
Q 004891          306 RGVRKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (725)
Q Consensus       306 ~~~~kIaVIG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (725)
                      +++.||+|||+|.||.. .+..+.+. +++|+ ++|++++++.+                         ..+.....+++
T Consensus         3 ~~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-------------------------~~~~~~~~~~~   57 (362)
T 3fhl_A            3 LEIIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSKE-------------------------RYPQASIVRSF   57 (362)
T ss_dssp             CCCEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGGT-------------------------TCTTSEEESCS
T ss_pred             CCceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHH-------------------------hCCCCceECCH
Confidence            44568999999999997 66666665 77775 78999765211                         01123445666


Q ss_pred             -cccc--CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHH
Q 004891          383 -SEFK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  431 (725)
Q Consensus       383 -~~l~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l  431 (725)
                       +.++  ++|+|++|+|.....  ++.....+.  ...+++-..-+....+.
T Consensus        58 ~~ll~~~~vD~V~i~tp~~~H~--~~~~~al~a--GkhVl~EKP~a~~~~ea  105 (362)
T 3fhl_A           58 KELTEDPEIDLIVVNTPDNTHY--EYAGMALEA--GKNVVVEKPFTSTTKQG  105 (362)
T ss_dssp             HHHHTCTTCCEEEECSCGGGHH--HHHHHHHHT--TCEEEEESSCCSSHHHH
T ss_pred             HHHhcCCCCCEEEEeCChHHHH--HHHHHHHHC--CCeEEEecCCCCCHHHH
Confidence             3344  499999999965553  333333221  22355544444554433

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=95.17  E-value=0.072  Score=56.02  Aligned_cols=109  Identities=12%  Similarity=0.128  Sum_probs=60.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCC-CHHHH-HHhhcCcccccCc-
Q 004891          308 VRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKL-TQDKA-NNALKMLKGVLDY-  382 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~-~~~~~-~~~~~~i~~~~~~-  382 (725)
                      |.||||+|+|.+|..+++.+... +++|+ +.|.+++......+.     +.....|.. ...+. .-.-+.+....+. 
T Consensus         2 mikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~-----dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~   76 (343)
T 2yyy_A            2 PAKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVE-----KGYKLFVAIPDNERVKLFEDAGIPVEGTIL   76 (343)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHH-----TTCCEEESSCCHHHHHHHHHTTCCCCCBGG
T ss_pred             ceEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHh-----cCCccccccCCCceeecccCCeEEECCchH
Confidence            35899999999999999999876 56765 456665554433210     000011221 11211 1111223333333 


Q ss_pred             ccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004891          383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (725)
Q Consensus       383 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~  425 (725)
                      +.+.++|+|++|.|.....  +...  ..++..++.++++.+.
T Consensus        77 ~~~~~vDiV~eatg~~~s~--~~a~--~~~l~aG~~VI~sap~  115 (343)
T 2yyy_A           77 DIIEDADIVVDGAPKKIGK--QNLE--NIYKPHKVKAILQGGE  115 (343)
T ss_dssp             GTGGGCSEEEECCCTTHHH--HHHH--HTTTTTTCEEEECTTS
T ss_pred             HhccCCCEEEECCCccccH--HHHH--HHHHHCCCEEEECCCc
Confidence            3457999999999854432  2211  3566777776665443

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=95.11  E-value=0.064  Score=58.60  Aligned_cols=74  Identities=14%  Similarity=0.051  Sum_probs=51.0

Q ss_pred             CcceEEEEcC----CCCcHHHHHHHHHC--CCcE-EEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccc
Q 004891          307 GVRKVAVIGG----GLMGSGIATAHILN--NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV  379 (725)
Q Consensus       307 ~~~kIaVIG~----G~mG~~iA~~l~~~--G~~V-~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~  379 (725)
                      ...||+|||+    |.||...+..+.+.  +++| .++|+++++++...+.          -|.          ..+...
T Consensus        19 ~~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~----------~g~----------~~~~~~   78 (438)
T 3btv_A           19 APIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQR----------LKL----------SNATAF   78 (438)
T ss_dssp             CCEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH----------TTC----------TTCEEE
T ss_pred             CCCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHH----------cCC----------Ccceee
Confidence            3458999999    99999999999886  6776 5889999886654321          010          011234


Q ss_pred             cCcc-cc--cCCCEEEEeccCChH
Q 004891          380 LDYS-EF--KDVDMVIEAVIESVP  400 (725)
Q Consensus       380 ~~~~-~l--~~aDlVIeavpe~~~  400 (725)
                      ++++ .+  .++|+|++|+|....
T Consensus        79 ~~~~~ll~~~~vD~V~i~tp~~~H  102 (438)
T 3btv_A           79 PTLESFASSSTIDMIVIAIQVASH  102 (438)
T ss_dssp             SSHHHHHHCSSCSEEEECSCHHHH
T ss_pred             CCHHHHhcCCCCCEEEEeCCcHHH
Confidence            5553 34  369999999995443

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=95.10  E-value=0.044  Score=58.81  Aligned_cols=95  Identities=13%  Similarity=0.018  Sum_probs=59.8

Q ss_pred             ceEEEEcCC-CCcHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcc-c
Q 004891          309 RKVAVIGGG-LMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-E  384 (725)
Q Consensus       309 ~kIaVIG~G-~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~  384 (725)
                      .||+|||+| .||..++..+.+. +++|+ ++|+++++++...+..                       .+...++++ .
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~-----------------------g~~~~~~~~el   59 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEY-----------------------GIPVFATLAEM   59 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHH-----------------------TCCEESSHHHH
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHc-----------------------CCCeECCHHHH
Confidence            589999999 9999999998875 56665 8899998876543211                       123345553 3


Q ss_pred             c--cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHH
Q 004891          385 F--KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI  430 (725)
Q Consensus       385 l--~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~  430 (725)
                      +  .++|+|++|+|.....  ++.....+.  ...+++-..-+....+
T Consensus        60 l~~~~vD~V~i~tp~~~H~--~~~~~al~a--Gk~Vl~EKP~a~~~~e  103 (387)
T 3moi_A           60 MQHVQMDAVYIASPHQFHC--EHVVQASEQ--GLHIIVEKPLTLSRDE  103 (387)
T ss_dssp             HHHSCCSEEEECSCGGGHH--HHHHHHHHT--TCEEEECSCCCSCHHH
T ss_pred             HcCCCCCEEEEcCCcHHHH--HHHHHHHHC--CCceeeeCCccCCHHH
Confidence            4  3699999999965543  333333221  1234544444455443

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=95.10  E-value=0.27  Score=54.69  Aligned_cols=161  Identities=14%  Similarity=0.143  Sum_probs=97.7

Q ss_pred             CCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCC
Q 004891           21 INPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCK   98 (725)
Q Consensus        21 ~~p~~--Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   98 (725)
                      |+|..  -.++++-.....+.++.++.. .+-.|.|--. +.|..|.+-.+          .........++ ..+.+..
T Consensus       354 n~~~~~~G~l~~~~a~Kaar~i~~a~~~-~iPlv~lvDt-~Gf~~G~~~E~----------~Gi~~~ga~~l-~a~~~~~  420 (548)
T 2bzr_A          354 NQPTHFAGCLDINASEKAARFVRTCDCF-NIPIVMLVDV-PGFLPGTDQEY----------NGIIRRGAKLL-YAYGEAT  420 (548)
T ss_dssp             ECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHH----------TTHHHHHHHHH-HHHHHCC
T ss_pred             ECCcccCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEeec-cCCCCChHHHH----------hhHHHHHHHHH-HHHhCCC
Confidence            45543  589999999999988888653 5666666422 23544443221          11223344555 5688899


Q ss_pred             CcEEEEEcccccchhhHHhh----hcCEEEeeCCceEeCcccccCCCCCchhhchHhhh-hCH------H--HHHH-HHH
Q 004891           99 KPIVAAVEGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL-VGL------S--KAIE-MML  164 (725)
Q Consensus        99 kp~Iaav~G~a~GgG~~lal----acD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~-vG~------~--~a~~-l~l  164 (725)
                      .|+|+.|-|.|+|||..-..    .+|+++|.++++++.       +++-|.+..+-+. +-.      .  ..++ +.-
T Consensus       421 VP~isvI~g~~~Ggg~~am~~~~~~~d~~~awp~a~i~V-------mgpegaa~Il~r~~~~~~~~~g~~~~~~~~~~~~  493 (548)
T 2bzr_A          421 VPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAV-------MGASGAVGFVYRQQLAEAAANGEDIDKLRLRLQQ  493 (548)
T ss_dssp             SCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTCCC----------CHHHHHHHHH
T ss_pred             CCEEEEEeCCcchHHHHHhccccCCCCEEEEcCCCEEEe-------cCHHHHHHHHhhhHHhhhhcccccHHHHHHHHHH
Confidence            99999999999998875543    389988888777653       3333433333322 110      0  1111 211


Q ss_pred             --cCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHH
Q 004891          165 --LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIA  201 (725)
Q Consensus       165 --~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la  201 (725)
                        .-..-++..+.+.|+||.|+++.+.........+.+.
T Consensus       494 ~y~~~~~~p~~~a~~g~iD~II~p~~tR~~l~~~L~~l~  532 (548)
T 2bzr_A          494 EYEDTLVNPYVAAERGYVGAVIPPSHTRGYIGTALRLLE  532 (548)
T ss_dssp             HHHHHHSBSHHHHHTTSSSEECCGGGHHHHHHHHHHHTT
T ss_pred             HHHHhhCCHHHHHhcCCCceeeCHHHHHHHHHHHHHHHh
Confidence              0112355778999999999998877665555544443

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=95.08  E-value=0.0075  Score=59.93  Aligned_cols=40  Identities=13%  Similarity=0.189  Sum_probs=34.4

Q ss_pred             CCCcceEEEEcC-CCCcHHHHHHHHHCC-CcEEEEeCChHHH
Q 004891          305 PRGVRKVAVIGG-GLMGSGIATAHILNN-IYVVLKEVNSEYL  344 (725)
Q Consensus       305 ~~~~~kIaVIG~-G~mG~~iA~~l~~~G-~~V~~~d~~~e~~  344 (725)
                      ++.|++|.|.|+ |.+|..++..|++.| ++|++++|+++.+
T Consensus        20 ~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~   61 (236)
T 3qvo_A           20 QGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKI   61 (236)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGS
T ss_pred             cCcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhh
Confidence            456788999995 999999999999999 8999999998764

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=95.08  E-value=0.021  Score=57.97  Aligned_cols=101  Identities=16%  Similarity=0.123  Sum_probs=56.6

Q ss_pred             CCcceEEEEc-CCCCcHHHHHHHHHC-CCcEEE-EeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc
Q 004891          306 RGVRKVAVIG-GGLMGSGIATAHILN-NIYVVL-KEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (725)
Q Consensus       306 ~~~~kIaVIG-~G~mG~~iA~~l~~~-G~~V~~-~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (725)
                      |++.||+|+| .|.||..++..+.+. +++++. +|++.+... .           .+.+.+.     .....+..++++
T Consensus         5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~-G-----------~d~gel~-----g~~~gv~v~~dl   67 (272)
T 4f3y_A            5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQL-G-----------QDAGAFL-----GKQTGVALTDDI   67 (272)
T ss_dssp             -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTT-T-----------SBTTTTT-----TCCCSCBCBCCH
T ss_pred             ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccc-c-----------ccHHHHh-----CCCCCceecCCH
Confidence            3468999999 799999999988865 677765 688743210 0           0001000     000123344555


Q ss_pred             -ccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh
Q 004891          383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL  428 (725)
Q Consensus       383 -~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~  428 (725)
                       +.+.++|+||++.+  ++...+......+   .+.-+++.|++++.
T Consensus        68 ~~ll~~~DVVIDfT~--p~a~~~~~~~al~---~G~~vVigTTG~s~  109 (272)
T 4f3y_A           68 ERVCAEADYLIDFTL--PEGTLVHLDAALR---HDVKLVIGTTGFSE  109 (272)
T ss_dssp             HHHHHHCSEEEECSC--HHHHHHHHHHHHH---HTCEEEECCCCCCH
T ss_pred             HHHhcCCCEEEEcCC--HHHHHHHHHHHHH---cCCCEEEECCCCCH
Confidence             34678999999886  4444444444333   33334444545443

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=95.07  E-value=0.011  Score=58.05  Aligned_cols=37  Identities=24%  Similarity=0.429  Sum_probs=33.9

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHH
Q 004891          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYL  344 (725)
Q Consensus       308 ~~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~  344 (725)
                      |+||.|+|+ |.+|+.++..|++.|++|++.+|+++..
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~   41 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKI   41 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGC
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccc
Confidence            578999996 9999999999999999999999998753

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.00  E-value=0.039  Score=57.74  Aligned_cols=35  Identities=17%  Similarity=0.132  Sum_probs=32.1

Q ss_pred             CcceEEEEcCCCCcHH-HHHHHHHCCCcEEEEeCCh
Q 004891          307 GVRKVAVIGGGLMGSG-IATAHILNNIYVVLKEVNS  341 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~-iA~~l~~~G~~V~~~d~~~  341 (725)
                      .++||.|||.|.+|.+ +|..|.+.|++|+++|.++
T Consensus         3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~   38 (326)
T 3eag_A            3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKM   38 (326)
T ss_dssp             CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            3689999999999996 9999999999999999875

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=94.99  E-value=0.035  Score=56.53  Aligned_cols=36  Identities=22%  Similarity=0.317  Sum_probs=29.4

Q ss_pred             CcceEEEEcC-CCCcHHHHHHHHH-CCCcEE-EEeCChH
Q 004891          307 GVRKVAVIGG-GLMGSGIATAHIL-NNIYVV-LKEVNSE  342 (725)
Q Consensus       307 ~~~kIaVIG~-G~mG~~iA~~l~~-~G~~V~-~~d~~~e  342 (725)
                      ...||+|+|+ |.||..++..+.+ .|++|+ ++|++++
T Consensus         4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~   42 (273)
T 1dih_A            4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGS   42 (273)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTC
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCch
Confidence            3468999998 9999999998774 578877 7788764

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=94.98  E-value=0.13  Score=57.78  Aligned_cols=158  Identities=11%  Similarity=0.124  Sum_probs=101.4

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEE
Q 004891           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (725)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav  105 (725)
                      -.++++-.....+.++.++. .++-+|.|.-.+ .|..|.+-.          ...+...+..++ .++..+..|+|+.|
T Consensus       385 G~l~~~~a~Kaarfi~~c~~-~~iPlv~lvDtp-Gf~~G~~~E----------~~Gi~~~gA~~~-~a~a~a~vP~itvI  451 (587)
T 1pix_A          385 GKLYRQGLVKMNEFVTLCAR-DRLPIVWIQDTT-GIDVGNDAE----------KAELLGLGQSLI-YSIQTSHIPQFEIT  451 (587)
T ss_dssp             TEECHHHHHHHHHHHHHHHH-TTCCEEEEECCC-EECCSHHHH----------HTTHHHHHHHHH-HHHHTCCCCEEEEE
T ss_pred             CCcCHHHHHHHHHHHHHhhc-CCCCeEEEecCC-CCCCcHHHH----------HHHHHHHHHHHH-HHHHhCCCCEEEEE
Confidence            47899999999999987664 466777775432 354444321          112334455666 67999999999999


Q ss_pred             cccccchhhHHhhh-----c--CEEEeeCCceEeCcccccCCCCCchhhchHhhh-hCH---------HHH--HH-HHH-
Q 004891          106 EGLALGGGLELAMG-----C--HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL-VGL---------SKA--IE-MML-  164 (725)
Q Consensus       106 ~G~a~GgG~~lala-----c--D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~-vG~---------~~a--~~-l~l-  164 (725)
                      -|.++|||. ++++     +  |+++|.++++++       ++++-|.+..+-+. .-.         ..+  ++ +.- 
T Consensus       452 ~g~~~Ggg~-~am~~~~~~~~~d~~~a~p~A~~~-------Vm~pegaa~Il~r~~~~~~~~~g~~~~~~~~~~~~~~~~  523 (587)
T 1pix_A          452 LRKGTAAAH-YVLGGPQGNDTNAFSIGTAATEIA-------VMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQA  523 (587)
T ss_dssp             CSEEETTHH-HHTTCTTCTTTEEEEEECTTCEEE-------SSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             cCCCccHHH-HHhcCcccCcccceeeeccCCeEe-------cCCHHHHHHHHHhhhhhhhhhcCCChHHHHHHHHHHHHH
Confidence            999998885 4444     4  998888877776       33334443333222 110         000  11 100 


Q ss_pred             cCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcC
Q 004891          165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR  204 (725)
Q Consensus       165 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~  204 (725)
                      --+..++..+.+.|+||.|+++.+.........+.+.+.+
T Consensus       524 y~~~~~p~~aa~~g~iD~VI~p~~tR~~l~~~L~~~~~~~  563 (587)
T 1pix_A          524 FYTKSRPKVCAELGLVDEIVDMNKIRGYVEAFTEAAYQNP  563 (587)
T ss_dssp             HHHTTSHHHHHHHTSSSEECCTTTHHHHHHHHHHHHTTSC
T ss_pred             HHHhCCHHHHHhcCCCccccCHHHHHHHHHHHHHHHhcCC
Confidence            0114788999999999999998887777666666665554

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=94.97  E-value=0.019  Score=59.49  Aligned_cols=91  Identities=18%  Similarity=0.062  Sum_probs=58.4

Q ss_pred             ceEEEEcCCCC-cHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccc-----c--c
Q 004891          309 RKVAVIGGGLM-GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-----V--L  380 (725)
Q Consensus       309 ~kIaVIG~G~m-G~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-----~--~  380 (725)
                      ++|.|||.|.| |..+|..|+..|..|+++||+..++..              +...-.    .  .....     +  .
T Consensus       178 k~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~--------------ra~~la----~--~~~~~t~~~~t~~~  237 (320)
T 1edz_A          178 KKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFT--------------RGESLK----L--NKHHVEDLGEYSED  237 (320)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEE--------------SCCCSS----C--CCCEEEEEEECCHH
T ss_pred             CEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHh--------------HHHHHh----h--hcccccccccccHh
Confidence            68999999976 999999999999999999998432110              000000    0  00111     1  2


Q ss_pred             Cc-ccccCCCEEEEeccCChH-HHHHHHHHHHHhCCCCeEEEecCCCC
Q 004891          381 DY-SEFKDVDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNTSTI  426 (725)
Q Consensus       381 ~~-~~l~~aDlVIeavpe~~~-~k~~v~~~l~~~~~~~~ii~s~tS~~  426 (725)
                      ++ +.+++||+||.|++-.-- ++.+       .+++++++++..+..
T Consensus       238 ~L~e~l~~ADIVIsAtg~p~~vI~~e-------~vk~GavVIDVgi~r  278 (320)
T 1edz_A          238 LLKKCSLDSDVVITGVPSENYKFPTE-------YIKEGAVCINFACTK  278 (320)
T ss_dssp             HHHHHHHHCSEEEECCCCTTCCBCTT-------TSCTTEEEEECSSSC
T ss_pred             HHHHHhccCCEEEECCCCCcceeCHH-------HcCCCeEEEEcCCCc
Confidence            33 567899999999974322 2222       357888888766543

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=94.91  E-value=0.15  Score=52.25  Aligned_cols=95  Identities=16%  Similarity=0.210  Sum_probs=63.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccc-cCcccc--
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDYSEF--  385 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~l--  385 (725)
                      .+|..||+|..|.+........|.+|+.+|++++.++.+++.+++.       |.          .++++. .+...+  
T Consensus       124 ~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~-------gl----------~~v~~v~gDa~~l~d  186 (298)
T 3fpf_A          124 ERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGL-------GV----------DGVNVITGDETVIDG  186 (298)
T ss_dssp             CEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHH-------TC----------CSEEEEESCGGGGGG
T ss_pred             CEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhc-------CC----------CCeEEEECchhhCCC
Confidence            6899999999765433322235889999999999999987654321       11          122221 111112  


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEec
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN  422 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~  422 (725)
                      ...|+|+.+..  ..-+..+++++...++|+..++..
T Consensus       187 ~~FDvV~~~a~--~~d~~~~l~el~r~LkPGG~Lvv~  221 (298)
T 3fpf_A          187 LEFDVLMVAAL--AEPKRRVFRNIHRYVDTETRIIYR  221 (298)
T ss_dssp             CCCSEEEECTT--CSCHHHHHHHHHHHCCTTCEEEEE
T ss_pred             CCcCEEEECCC--ccCHHHHHHHHHHHcCCCcEEEEE
Confidence            45799997654  445678899999999998776643

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=94.89  E-value=0.02  Score=58.12  Aligned_cols=72  Identities=17%  Similarity=0.163  Sum_probs=53.7

Q ss_pred             ceEEEEcCCC-CcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~-mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      +++.|||.|. .|.++|..|...|..|++.++....++                                     +.+++
T Consensus       161 k~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~L~-------------------------------------~~~~~  203 (285)
T 3p2o_A          161 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLS-------------------------------------LYTRQ  203 (285)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHH-------------------------------------HHHTT
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHhhc
Confidence            6899999876 699999999999999999986532211                                     34678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  424 (725)
                      ||+||.+++-.--++.       +.++++++|++...
T Consensus       204 ADIVI~Avg~p~~I~~-------~~vk~GavVIDVgi  233 (285)
T 3p2o_A          204 ADLIIVAAGCVNLLRS-------DMVKEGVIVVDVGI  233 (285)
T ss_dssp             CSEEEECSSCTTCBCG-------GGSCTTEEEEECCC
T ss_pred             CCEEEECCCCCCcCCH-------HHcCCCeEEEEecc
Confidence            9999999974322322       44688998876543

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=94.87  E-value=0.04  Score=56.56  Aligned_cols=41  Identities=20%  Similarity=0.116  Sum_probs=36.4

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 004891          309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (725)
Q Consensus       309 ~kIaVIG-~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~  349 (725)
                      ++|.|+| +|-+|.+++..|++.|++|++++|++++++...+
T Consensus       120 k~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~  161 (287)
T 1lu9_A          120 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAAD  161 (287)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHH
Confidence            5789999 8999999999999999999999999887766544

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=94.85  E-value=0.065  Score=57.72  Aligned_cols=76  Identities=18%  Similarity=0.157  Sum_probs=51.3

Q ss_pred             CCcceEEEEcCCC---CcHHHHHHHHHCC-CcEE--EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccc
Q 004891          306 RGVRKVAVIGGGL---MGSGIATAHILNN-IYVV--LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV  379 (725)
Q Consensus       306 ~~~~kIaVIG~G~---mG~~iA~~l~~~G-~~V~--~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~  379 (725)
                      |+.-||||||+|.   ||...+..+...+ ++|+  ++|+++++++...++          -| +         ......
T Consensus        10 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~----------~g-~---------~~~~~~   69 (398)
T 3dty_A           10 PQPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQ----------LG-V---------DSERCY   69 (398)
T ss_dssp             CSCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHH----------TT-C---------CGGGBC
T ss_pred             cCcceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHH----------hC-C---------Ccceee
Confidence            3446899999999   9999988887765 6776  579999887664321          11 0         001334


Q ss_pred             cCcc-ccc-------CCCEEEEeccCChHH
Q 004891          380 LDYS-EFK-------DVDMVIEAVIESVPL  401 (725)
Q Consensus       380 ~~~~-~l~-------~aDlVIeavpe~~~~  401 (725)
                      ++++ .++       +.|+|++|+|.....
T Consensus        70 ~~~~~ll~~~~~~~~~vD~V~i~tp~~~H~   99 (398)
T 3dty_A           70 ADYLSMFEQEARRADGIQAVSIATPNGTHY   99 (398)
T ss_dssp             SSHHHHHHHHTTCTTCCSEEEEESCGGGHH
T ss_pred             CCHHHHHhcccccCCCCCEEEECCCcHHHH
Confidence            5553 333       499999999966553

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=94.82  E-value=0.19  Score=55.67  Aligned_cols=163  Identities=15%  Similarity=0.093  Sum_probs=101.3

Q ss_pred             CCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCC
Q 004891           21 INPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCK   98 (725)
Q Consensus        21 ~~p~~--Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   98 (725)
                      |+|..  -.++++-.....+.++.++. .++-.|.|--. +.|..|.+-.+          .........++ ..+.+..
T Consensus       333 n~~~~~~G~~~~~~a~Kaar~i~~~~~-~~iPlv~lvDt-pGf~~G~~~E~----------~Gi~~~~A~~l-~a~a~~~  399 (523)
T 1on3_A          333 NQPSVMSGCLDINASDKAAEFVNFCDS-FNIPLVQLVDV-PGFLPGVQQEY----------GGIIRHGAKML-YAYSEAT  399 (523)
T ss_dssp             ECTTSGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEE-CCBCCCHHHHH----------TTHHHHHHHHH-HHHHHCC
T ss_pred             ecCCccCCCCCHHHHHHHHHHHHHHHh-cCCCeEEEEeC-CCcCcchHHHH----------hhHHHHHHHHH-HHHhcCC
Confidence            45543  57999999999999988764 45666666432 23544443211          12233444556 5688899


Q ss_pred             CcEEEEEcccccchhhHHhhh----cCEEEeeCCceEeCcccccCCCCCchhhchHhhhh-----CHHHHHH-HHH--cC
Q 004891           99 KPIVAAVEGLALGGGLELAMG----CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV-----GLSKAIE-MML--LS  166 (725)
Q Consensus        99 kp~Iaav~G~a~GgG~~lala----cD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~v-----G~~~a~~-l~l--~g  166 (725)
                      .|+|+.|-|.++|||+.-...    +|+++|.+++.++       ++++-|.+..+-+.-     -....++ +.-  .-
T Consensus       400 vP~itvI~g~~~Ggg~~am~~~~~~~d~~~a~p~a~~~-------Vm~pegaa~Il~r~~~~~~~d~~~~~~~~~~~y~~  472 (523)
T 1on3_A          400 VPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIA-------VMGAEGAANVIFRKEIKAADDPDAMRAEKIEEYQN  472 (523)
T ss_dssp             SCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCcccHHHHHhcccCCCCCEEEEcCCCeEE-------ecCHHHHHHHHhhhhhhcccCHHHHHHHHHHHHHH
Confidence            999999999999888755444    7887777766665       444444444443321     0111111 211  11


Q ss_pred             CCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhc
Q 004891          167 KSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR  203 (725)
Q Consensus       167 ~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~  203 (725)
                      ..-++..+.+.|+||+|+++.++........+.+...
T Consensus       473 ~~~~p~~~a~~g~iD~II~p~~tR~~l~~~L~~l~~~  509 (523)
T 1on3_A          473 AFNTPYVAAARGQVDDVIDPADTRRKIASALEMYATK  509 (523)
T ss_dssp             HHSSHHHHHHTTSSSEECCGGGHHHHHHHHHHHGGGC
T ss_pred             hhCCHHHHHhcCCCCEeeCHHHHHHHHHHHHHHHhcC
Confidence            1256688999999999999988777666655555443

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=94.82  E-value=0.024  Score=61.49  Aligned_cols=95  Identities=15%  Similarity=0.138  Sum_probs=59.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHC---------CCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccc
Q 004891          310 KVAVIGGGLMGSGIATAHILN---------NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV  379 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~---------G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~  379 (725)
                      ||||||+|.||...+..+.+.         +.+|+ ++|++++++++..+++                      +.....
T Consensus        28 rvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~----------------------~~~~~y   85 (412)
T 4gqa_A           28 NIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKL----------------------GAEKAY   85 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHH----------------------TCSEEE
T ss_pred             eEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHc----------------------CCCeEE
Confidence            799999999999888888764         34554 7899999877654321                      222345


Q ss_pred             cCcc-cc--cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHH
Q 004891          380 LDYS-EF--KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI  430 (725)
Q Consensus       380 ~~~~-~l--~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~  430 (725)
                      +|++ .+  .+.|+|++|+|.....  ++.....+.  ..-+++-..-+....+
T Consensus        86 ~d~~~ll~~~~vD~V~I~tp~~~H~--~~~~~al~a--GkhVl~EKP~a~~~~e  135 (412)
T 4gqa_A           86 GDWRELVNDPQVDVVDITSPNHLHY--TMAMAAIAA--GKHVYCEKPLAVNEQQ  135 (412)
T ss_dssp             SSHHHHHHCTTCCEEEECSCGGGHH--HHHHHHHHT--TCEEEEESCSCSSHHH
T ss_pred             CCHHHHhcCCCCCEEEECCCcHHHH--HHHHHHHHc--CCCeEeecCCcCCHHH
Confidence            5663 33  4689999999966554  333332221  2235554444444443

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=94.80  E-value=0.073  Score=56.00  Aligned_cols=96  Identities=10%  Similarity=0.005  Sum_probs=60.7

Q ss_pred             cceEEEEcCC-CCcHHHHHHHHHC--CCcE-EEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcc
Q 004891          308 VRKVAVIGGG-LMGSGIATAHILN--NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (725)
Q Consensus       308 ~~kIaVIG~G-~mG~~iA~~l~~~--G~~V-~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (725)
                      ..||+|||+| .||...+..+.+.  +++| .++|+++++++...++                      .+.....++++
T Consensus        18 ~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~----------------------~~~~~~~~~~~   75 (340)
T 1zh8_A           18 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKM----------------------VGNPAVFDSYE   75 (340)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHH----------------------HSSCEEESCHH
T ss_pred             ceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHH----------------------hCCCcccCCHH
Confidence            3589999999 8999999999876  4665 5889999887664321                      11123455663


Q ss_pred             -cc--cCCCEEEEeccCChHHHHHHHHHHHHhCCCC-eEEEecCCCCChHH
Q 004891          384 -EF--KDVDMVIEAVIESVPLKQKIFSELEKACPPH-CILATNTSTIDLNI  430 (725)
Q Consensus       384 -~l--~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~-~ii~s~tS~~~~~~  430 (725)
                       .+  .++|+|++|+|.....  ++.....+   .+ .+++-..-+....+
T Consensus        76 ~ll~~~~vD~V~i~tp~~~H~--~~~~~al~---aGkhVl~EKPla~~~~e  121 (340)
T 1zh8_A           76 ELLESGLVDAVDLTLPVELNL--PFIEKALR---KGVHVICEKPISTDVET  121 (340)
T ss_dssp             HHHHSSCCSEEEECCCGGGHH--HHHHHHHH---TTCEEEEESSSSSSHHH
T ss_pred             HHhcCCCCCEEEEeCCchHHH--HHHHHHHH---CCCcEEEeCCCCCCHHH
Confidence             34  3699999999965542  33333322   23 35554433444443

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=94.77  E-value=0.32  Score=53.72  Aligned_cols=161  Identities=14%  Similarity=0.122  Sum_probs=97.6

Q ss_pred             CCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCC
Q 004891           21 INPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCK   98 (725)
Q Consensus        21 ~~p~~--Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   98 (725)
                      |+|..  -.++++-.+...+.++.++.. ++-.|.|.-.+ .|..|.+-.          ...+......++ .++.++.
T Consensus       345 n~~~~~~G~l~~~~a~Kaarfi~lcd~~-~iPlv~lvDtp-Gf~~G~~~E----------~~Gi~~~gAk~l-~a~a~a~  411 (531)
T 3n6r_B          345 NQPLVLAGCLDIDSSRKAARFVRFCDAF-EIPLLTLIDVP-GFLPGTSQE----------YGGVIKHGAKLL-YAYGEAT  411 (531)
T ss_dssp             ECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC-SBCCSHHHH----------HTTHHHHHHHHH-HHHHHCC
T ss_pred             ecccccCCCCCHHHHHHHHHHHHHhhcc-CCCEEEEeCCC-CCCCCHHHH----------HhhHHHHHHHHH-HHHHhCC
Confidence            56643  589999999999988877653 56666664322 244443321          112234455666 6689999


Q ss_pred             CcEEEEEcccccchhhHHhhh----cCEEEeeCCceEeCcccccCCCCCchhhchHhh-hhC---HHHHHHHHHcCCCCC
Q 004891           99 KPIVAAVEGLALGGGLELAMG----CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPR-LVG---LSKAIEMMLLSKSIT  170 (725)
Q Consensus        99 kp~Iaav~G~a~GgG~~lala----cD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r-~vG---~~~a~~l~l~g~~~~  170 (725)
                      .|+|+.|-|.++|||..-...    +|+++|.+++.++.       +++-+.+..+-+ -+-   ....+.--+.-+.-+
T Consensus       412 VP~itvI~g~~~Ggg~~am~~~~~~~d~~~awp~A~i~V-------m~pegaa~Il~r~~~~~~~~~~~~~~~y~~~~~~  484 (531)
T 3n6r_B          412 VPMVTVITRKAYGGAYVVMSSKHLRADFNYAWPTAEVAV-------MGAKGATEIIHRGDLGDPEKIAQHTADYEERFAN  484 (531)
T ss_dssp             SCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHCCTTTTSTTHHHHHHHHHHHHHSS
T ss_pred             CCEEEEEcCCccchhhhhccCccCCCCeEEEcCCceEec-------CCHHHHHHHHhcccccchhHHHHHHHHHHHHhcC
Confidence            999999999999988744433    89988887777653       333333332222 111   011110011112235


Q ss_pred             HHHHHHcCCcceecCcchHHHHHHHHHHHHH
Q 004891          171 SEEGWKLGLIDAVVTSEELLKVSRLWALDIA  201 (725)
Q Consensus       171 a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la  201 (725)
                      +..|.+.|+||.|+++.+.........+.+.
T Consensus       485 p~~aa~~~~vD~vIdP~~TR~~l~~~l~~~~  515 (531)
T 3n6r_B          485 PFVASERGFVDEVIQPRSTRKRVARAFASLR  515 (531)
T ss_dssp             SHHHHHHTSSSEECCGGGHHHHHHHHHHTTT
T ss_pred             HHHHHhcCccCcccCHHHHHHHHHHHHHHHh
Confidence            5678889999999999887665555444433

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=94.74  E-value=0.022  Score=57.70  Aligned_cols=72  Identities=14%  Similarity=0.084  Sum_probs=53.1

Q ss_pred             ceEEEEcCCC-CcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~-mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      +++.|||.|. +|.++|..|...|..|++.++....++                                     +.+++
T Consensus       162 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~-------------------------------------~~~~~  204 (285)
T 3l07_A          162 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLK-------------------------------------SHTTK  204 (285)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH-------------------------------------HHHTT
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------Hhccc
Confidence            6899999876 799999999999999999976432211                                     34678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  424 (725)
                      ||+||.+++-.--++.       +.++++++|++...
T Consensus       205 ADIVI~Avg~p~~I~~-------~~vk~GavVIDvgi  234 (285)
T 3l07_A          205 ADILIVAVGKPNFITA-------DMVKEGAVVIDVGI  234 (285)
T ss_dssp             CSEEEECCCCTTCBCG-------GGSCTTCEEEECCC
T ss_pred             CCEEEECCCCCCCCCH-------HHcCCCcEEEEecc
Confidence            9999999974322322       34688988876543

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=94.72  E-value=0.014  Score=59.23  Aligned_cols=72  Identities=15%  Similarity=0.133  Sum_probs=53.3

Q ss_pred             ceEEEEcCCC-CcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~-mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      ++|.|||.|. .|..+|..|...|..|+++++....+.                                     +.+++
T Consensus       160 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~-------------------------------------~~~~~  202 (288)
T 1b0a_A          160 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLR-------------------------------------HHVEN  202 (288)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHH-------------------------------------HHHHH
T ss_pred             CEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHhcc
Confidence            6899999996 699999999999999999986543322                                     34567


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  424 (725)
                      ||+||.+++..--++.       +.++++++|++...
T Consensus       203 ADIVI~Avg~p~lI~~-------~~vk~GavVIDVgi  232 (288)
T 1b0a_A          203 ADLLIVAVGKPGFIPG-------DWIKEGAIVIDVGI  232 (288)
T ss_dssp             CSEEEECSCCTTCBCT-------TTSCTTCEEEECCC
T ss_pred             CCEEEECCCCcCcCCH-------HHcCCCcEEEEccC
Confidence            9999999973322322       23578888876543

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=94.63  E-value=0.082  Score=60.24  Aligned_cols=81  Identities=11%  Similarity=0.078  Sum_probs=56.1

Q ss_pred             CCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCC--CHHHH
Q 004891           97 CKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI--TSEEG  174 (725)
Q Consensus        97 ~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~--~a~eA  174 (725)
                      ...|+|++|.|.|.|||..+...||++|+.+++.+.+.                    |+...+.  .+|+.+  +.++.
T Consensus       245 ~~IPqIsvV~G~c~GGgAY~paL~D~vImv~~s~iflt--------------------GP~vIk~--~tGeeV~~s~eeL  302 (758)
T 3k8x_A          245 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILT--------------------GAPAINK--MLGREVYTSNLQL  302 (758)
T ss_dssp             TTSCEEEEECSCEETHHHHHHHHTCEEEEETTCCEESS--------------------CHHHHHH--HHTSCCCSCTHHH
T ss_pred             cCCCEEEEEccCCchHHHHHHhhCCEEEEECCceEEEe--------------------CHHHHHH--HhCCccccCchhc
Confidence            46799999999999999999999999999988644322                    2222211  266665  54432


Q ss_pred             ------HHcCCcceecCcchHHHHHHHHHHHHHh
Q 004891          175 ------WKLGLIDAVVTSEELLKVSRLWALDIAA  202 (725)
Q Consensus       175 ------~~~Glv~~vv~~~~l~~~a~~~a~~la~  202 (725)
                            ...|++|.+++.|.   .+.+.++++.+
T Consensus       303 GGA~vh~~sGvad~va~dd~---eal~~ir~lLs  333 (758)
T 3k8x_A          303 GGTQIMYNNGVSHLTAVDDL---AGVEKIVEWMS  333 (758)
T ss_dssp             HSHHHHTTTTSSSEEESSHH---HHHHHHHHHHT
T ss_pred             chhhHHHhcCCeeEEecCHH---HHHHHHHHHHh
Confidence                  37999999997653   44445555443

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=94.63  E-value=0.58  Score=51.73  Aligned_cols=162  Identities=15%  Similarity=0.215  Sum_probs=100.5

Q ss_pred             CCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCC
Q 004891           21 INPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCK   98 (725)
Q Consensus        21 ~~p~~--Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   98 (725)
                      |+|..  -.++++-.....+.++.++.. ++-+|.|.-.+ .|..|.+-.          ...+......++ .++.+..
T Consensus       339 n~~~~~~G~l~~~~a~Kaarfi~~c~~~-~iPlv~lvDtp-Gf~~G~~~E----------~~gi~~~~Ak~l-~a~a~a~  405 (530)
T 3iav_A          339 NQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDVP-GFLPGVDQE----------HDGIIRRGAKLI-FAYAEAT  405 (530)
T ss_dssp             ECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC-CBCCCHHHH----------HTTHHHHHHHHH-HHHHHCC
T ss_pred             ecCcccCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEeeCC-CCCccHHHH----------HhhHHHHHHHHH-HHHHhCC
Confidence            56654  589999999999999877754 56677764332 255554421          122334455666 6689999


Q ss_pred             CcEEEEEcccccchhhHHhhh-----cCEEEeeCCceEeCcccccCCCCCchhhchHhhh-hC------HHHHHHHH--H
Q 004891           99 KPIVAAVEGLALGGGLELAMG-----CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL-VG------LSKAIEMM--L  164 (725)
Q Consensus        99 kp~Iaav~G~a~GgG~~lala-----cD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~-vG------~~~a~~l~--l  164 (725)
                      .|+|+.|-|.++|||. ++++     +|+++|.+++.++.       +++-+.+..+-+. +-      ...-.++.  +
T Consensus       406 vP~itvI~g~~~GGa~-~am~~~~~~~d~~~awp~a~~~V-------m~~egaa~il~r~~~~~~~~d~~~~~~~~~~~y  477 (530)
T 3iav_A          406 VPLITVITRKAFGGAY-VVMGSKHLGADLNLAWPTAQIAV-------MGAQGAVNILHRRTIADAGDDAEATRARLIQEY  477 (530)
T ss_dssp             SCEEEEEEEEEEHHHH-HHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTSTTTSTTCTTCHHHHHHHHHHH
T ss_pred             CCEEEEEeCCcchHHH-HHhcCCCCCCCEEEEcCCceEec-------CCHHHHHHHHhhhhhhhcccCHHHHHHHHHHHH
Confidence            9999999999998776 4444     79988888877663       3333333333221 11      00111111  1


Q ss_pred             cCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhc
Q 004891          165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR  203 (725)
Q Consensus       165 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~  203 (725)
                      .-+.-++..|.+.|+||.|+++.+.........+.+..+
T Consensus       478 ~~~~~~p~~aa~~~~vD~VIdP~~TR~~l~~~l~~~~~k  516 (530)
T 3iav_A          478 EDALLNPYTAAERGYVDAVIMPSDTRRHIVRGLRQLRTK  516 (530)
T ss_dssp             HHHHSSSHHHHHTTSSSEECCGGGHHHHHHHHHHHHTTC
T ss_pred             HHhcCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHhcC
Confidence            111236777889999999999988776655555444443

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=94.56  E-value=0.03  Score=59.31  Aligned_cols=69  Identities=13%  Similarity=0.164  Sum_probs=48.4

Q ss_pred             cceEEEEcCCCCcHH-HHHHHHHC-CCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcc-
Q 004891          308 VRKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-  383 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-  383 (725)
                      ..||+|||+|.||.. .+..+.+. +++|+ ++|++++++++             .            .......++++ 
T Consensus         7 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~-------------~------------~~~~~~~~~~~~   61 (352)
T 3kux_A            7 KIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHA-------------D------------WPAIPVVSDPQM   61 (352)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHT-------------T------------CSSCCEESCHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHh-------------h------------CCCCceECCHHH
Confidence            358999999999997 67777665 67765 88999876431             0            11234456663 


Q ss_pred             cc--cCCCEEEEeccCChHH
Q 004891          384 EF--KDVDMVIEAVIESVPL  401 (725)
Q Consensus       384 ~l--~~aDlVIeavpe~~~~  401 (725)
                      .+  .+.|+|++|+|.....
T Consensus        62 ll~~~~vD~V~i~tp~~~H~   81 (352)
T 3kux_A           62 LFNDPSIDLIVIPTPNDTHF   81 (352)
T ss_dssp             HHHCSSCCEEEECSCTTTHH
T ss_pred             HhcCCCCCEEEEeCChHHHH
Confidence            34  3599999999976654

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=94.47  E-value=0.03  Score=57.52  Aligned_cols=34  Identities=24%  Similarity=0.309  Sum_probs=31.3

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSE  342 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e  342 (725)
                      +||.|.|+ |.+|+.++..|.+.||+|++..|+++
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~   35 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG   35 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            47999998 99999999999999999999999764

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=94.43  E-value=0.043  Score=59.61  Aligned_cols=98  Identities=15%  Similarity=0.136  Sum_probs=59.2

Q ss_pred             cceEEEEcCCC---CcHHHHHHHHHCC-CcEE--EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccC
Q 004891          308 VRKVAVIGGGL---MGSGIATAHILNN-IYVV--LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (725)
Q Consensus       308 ~~kIaVIG~G~---mG~~iA~~l~~~G-~~V~--~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (725)
                      ..||||||+|.   ||...+..+...+ ++|+  ++|+++++++...+++          |.          ......++
T Consensus        37 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~----------g~----------~~~~~~~~   96 (417)
T 3v5n_A           37 RIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGREL----------GL----------DPSRVYSD   96 (417)
T ss_dssp             CEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHH----------TC----------CGGGBCSC
T ss_pred             cceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHc----------CC----------CcccccCC
Confidence            35899999999   9999888887765 6765  6799999876653321          10          00123455


Q ss_pred             c-cccc-------CCCEEEEeccCChHHHHHHHHHHHHhCCCCe-EEEecCCCCChHH
Q 004891          382 Y-SEFK-------DVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNI  430 (725)
Q Consensus       382 ~-~~l~-------~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~  430 (725)
                      + +.++       +.|+|++|+|.....  ++....   +..+. +++-..-+....+
T Consensus        97 ~~~ll~~~~~~~~~vD~V~I~tp~~~H~--~~~~~a---l~aGkhVl~EKPla~~~~e  149 (417)
T 3v5n_A           97 FKEMAIREAKLKNGIEAVAIVTPNHVHY--AAAKEF---LKRGIHVICDKPLTSTLAD  149 (417)
T ss_dssp             HHHHHHHHHHCTTCCSEEEECSCTTSHH--HHHHHH---HTTTCEEEEESSSCSSHHH
T ss_pred             HHHHHhcccccCCCCcEEEECCCcHHHH--HHHHHH---HhCCCeEEEECCCcCCHHH
Confidence            5 3333       489999999976653  333332   23343 5554443444443

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=94.41  E-value=0.032  Score=57.25  Aligned_cols=33  Identities=27%  Similarity=0.264  Sum_probs=30.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCh
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~  341 (725)
                      .||.|||+|-.|+.+|..|+++|. +++++|.+.
T Consensus        37 ~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           37 FAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            589999999999999999999997 899999875

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=94.40  E-value=0.027  Score=57.08  Aligned_cols=72  Identities=17%  Similarity=0.144  Sum_probs=52.7

Q ss_pred             ceEEEEcCCC-CcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~-mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      +++.|||.|. .|.++|..|...|..|++..+....++                                     +.+++
T Consensus       162 k~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~~L~-------------------------------------~~~~~  204 (286)
T 4a5o_A          162 MDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLA-------------------------------------DHVSR  204 (286)
T ss_dssp             CEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCSCHH-------------------------------------HHHHT
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCcCHH-------------------------------------HHhcc
Confidence            6899999865 899999999999999999876432211                                     34678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  424 (725)
                      ||+||.+++-..-++.       +.++++++|++..+
T Consensus       205 ADIVI~Avg~p~~I~~-------~~vk~GavVIDvgi  234 (286)
T 4a5o_A          205 ADLVVVAAGKPGLVKG-------EWIKEGAIVIDVGI  234 (286)
T ss_dssp             CSEEEECCCCTTCBCG-------GGSCTTCEEEECCS
T ss_pred             CCEEEECCCCCCCCCH-------HHcCCCeEEEEecc
Confidence            9999999974322322       34688888876543

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=94.40  E-value=0.026  Score=57.03  Aligned_cols=71  Identities=23%  Similarity=0.231  Sum_probs=52.7

Q ss_pred             ceEEEEcCCCC-cHHHHHHHHHC--CCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccc
Q 004891          309 RKVAVIGGGLM-GSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (725)
Q Consensus       309 ~kIaVIG~G~m-G~~iA~~l~~~--G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l  385 (725)
                      +++.|||.|.| |..+|..|...  |..|++.+++.+.+.                                     +.+
T Consensus       159 k~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t~~L~-------------------------------------~~~  201 (281)
T 2c2x_A          159 AHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTRDLP-------------------------------------ALT  201 (281)
T ss_dssp             CEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTCSCHH-------------------------------------HHH
T ss_pred             CEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECchhHHH-------------------------------------HHH
Confidence            68999999976 99999999999  899999876542221                                     346


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (725)
                      ++||+||.+++-.--++.+       .+++++++++..
T Consensus       202 ~~ADIVI~Avg~p~~I~~~-------~vk~GavVIDVg  232 (281)
T 2c2x_A          202 RQADIVVAAVGVAHLLTAD-------MVRPGAAVIDVG  232 (281)
T ss_dssp             TTCSEEEECSCCTTCBCGG-------GSCTTCEEEECC
T ss_pred             hhCCEEEECCCCCcccCHH-------HcCCCcEEEEcc
Confidence            7899999999733223322       357888887644

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=94.39  E-value=0.031  Score=55.42  Aligned_cols=42  Identities=12%  Similarity=0.123  Sum_probs=35.8

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 004891          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (725)
Q Consensus       308 ~~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~  349 (725)
                      .++|.|.|+ |-+|.++|..|++.|++|++.+++++.++...+
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~   45 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQEL   45 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            356777776 889999999999999999999999988776544

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=94.35  E-value=0.09  Score=58.10  Aligned_cols=74  Identities=20%  Similarity=0.115  Sum_probs=51.0

Q ss_pred             CcceEEEEcC----CCCcHHHHHHHHHC--CCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccc
Q 004891          307 GVRKVAVIGG----GLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV  379 (725)
Q Consensus       307 ~~~kIaVIG~----G~mG~~iA~~l~~~--G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~  379 (725)
                      ...||+|||+    |.||...+..|.+.  +++|+ ++|+++++++...+.          -|.          ......
T Consensus        38 ~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~----------~g~----------~~~~~~   97 (479)
T 2nvw_A           38 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQ----------LQL----------KHATGF   97 (479)
T ss_dssp             CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHH----------TTC----------TTCEEE
T ss_pred             CcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHH----------cCC----------Ccceee
Confidence            3458999999    99999999999885  77764 889999887664321          010          011235


Q ss_pred             cCc-ccc--cCCCEEEEeccCChH
Q 004891          380 LDY-SEF--KDVDMVIEAVIESVP  400 (725)
Q Consensus       380 ~~~-~~l--~~aDlVIeavpe~~~  400 (725)
                      +++ +.+  .++|+|++|+|....
T Consensus        98 ~d~~ell~~~~vD~V~I~tp~~~H  121 (479)
T 2nvw_A           98 DSLESFAQYKDIDMIVVSVKVPEH  121 (479)
T ss_dssp             SCHHHHHHCTTCSEEEECSCHHHH
T ss_pred             CCHHHHhcCCCCCEEEEcCCcHHH
Confidence            555 334  379999999995443

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=94.32  E-value=0.009  Score=58.49  Aligned_cols=78  Identities=22%  Similarity=0.229  Sum_probs=46.2

Q ss_pred             ceEEEEcCCCCcHHHHHH--HHHCCCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cc
Q 004891          309 RKVAVIGGGLMGSGIATA--HILNNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~--l~~~G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (725)
                      .+|+|||+|.+|..++..  +...|++++ ++|.+++......            .|          . .+...+++ +.
T Consensus        86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i------------~g----------v-~V~~~~dl~el  142 (215)
T 2vt3_A           86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEV------------GG----------V-PVYNLDDLEQH  142 (215)
T ss_dssp             -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEE------------TT----------E-EEEEGGGHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHh------------cC----------C-eeechhhHHHH
Confidence            479999999999999994  445688765 7799987633210            00          0 11123344 33


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHH
Q 004891          385 FKDVDMVIEAVIESVPLKQKIFSELEK  411 (725)
Q Consensus       385 l~~aDlVIeavpe~~~~k~~v~~~l~~  411 (725)
                      +++.|+||+|+|  ....+++...+.+
T Consensus       143 i~~~D~ViIAvP--s~~~~ei~~~l~~  167 (215)
T 2vt3_A          143 VKDESVAILTVP--AVAAQSITDRLVA  167 (215)
T ss_dssp             CSSCCEEEECSC--HHHHHHHHHHHHH
T ss_pred             HHhCCEEEEecC--chhHHHHHHHHHH
Confidence            444499999999  4444566666544

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=94.30  E-value=0.039  Score=58.81  Aligned_cols=68  Identities=15%  Similarity=0.075  Sum_probs=48.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC--CCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cc
Q 004891          309 RKVAVIGGGLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~--G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (725)
                      .||+|||+| +|.--+..+.+.  +++++ ++|+++++.++..+.                      . .+...+++ +.
T Consensus         8 ~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~----------------------~-gv~~~~~~~~l   63 (372)
T 4gmf_A            8 QRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHA----------------------F-GIPLYTSPEQI   63 (372)
T ss_dssp             EEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHH----------------------T-TCCEESSGGGC
T ss_pred             CEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHH----------------------h-CCCEECCHHHH
Confidence            589999999 798877777664  57766 789999887664321                      1 23445666 45


Q ss_pred             ccCCCEEEEeccCChH
Q 004891          385 FKDVDMVIEAVIESVP  400 (725)
Q Consensus       385 l~~aDlVIeavpe~~~  400 (725)
                      +++.|+|++|+|....
T Consensus        64 ~~~~D~v~i~~p~~~h   79 (372)
T 4gmf_A           64 TGMPDIACIVVRSTVA   79 (372)
T ss_dssp             CSCCSEEEECCC--CT
T ss_pred             hcCCCEEEEECCCccc
Confidence            6889999999986543

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=94.25  E-value=0.18  Score=52.46  Aligned_cols=40  Identities=18%  Similarity=0.104  Sum_probs=35.3

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 004891          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (725)
Q Consensus       308 ~~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~  347 (725)
                      .++|.|.|+ |.+|+.++..|++.|++|++.+++++..+..
T Consensus        11 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~   51 (342)
T 1y1p_A           11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANL   51 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHH
Confidence            368999988 9999999999999999999999998775543

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=94.24  E-value=0.11  Score=57.55  Aligned_cols=38  Identities=24%  Similarity=0.298  Sum_probs=32.4

Q ss_pred             CCCcceEEEEcCCCCcHH-HHHHHHHCCCcEEEEeCChH
Q 004891          305 PRGVRKVAVIGGGLMGSG-IATAHILNNIYVVLKEVNSE  342 (725)
Q Consensus       305 ~~~~~kIaVIG~G~mG~~-iA~~l~~~G~~V~~~d~~~e  342 (725)
                      +..++||.|||.|..|.+ +|..|.+.|++|+++|..+.
T Consensus        19 ~~~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~   57 (494)
T 4hv4_A           19 MRRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPN   57 (494)
T ss_dssp             ---CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             hccCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCC
Confidence            345789999999999996 99999999999999998754

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=94.22  E-value=0.037  Score=55.69  Aligned_cols=44  Identities=18%  Similarity=0.300  Sum_probs=37.4

Q ss_pred             ceEEEE--cCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHH
Q 004891          309 RKVAVI--GGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE  352 (725)
Q Consensus       309 ~kIaVI--G~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~  352 (725)
                      .|+++|  |.+-+|.++|..|++.|.+|++.|++++.+++..+.+.
T Consensus         9 gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~   54 (255)
T 4g81_D            9 GKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLT   54 (255)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            478888  55889999999999999999999999998887765443

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=94.22  E-value=0.049  Score=56.00  Aligned_cols=34  Identities=21%  Similarity=0.200  Sum_probs=31.7

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCh
Q 004891          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS  341 (725)
Q Consensus       308 ~~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~  341 (725)
                      +++|.|+|+ |.+|+.++..|++.|++|++.+|++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   36 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKT   36 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCS
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCC
Confidence            468999997 9999999999999999999999986

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=94.21  E-value=0.033  Score=54.34  Aligned_cols=35  Identities=14%  Similarity=0.269  Sum_probs=32.1

Q ss_pred             eEEEEc-CCCCcHHHHHHHHHCCCcEEEEeCChHHH
Q 004891          310 KVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYL  344 (725)
Q Consensus       310 kIaVIG-~G~mG~~iA~~l~~~G~~V~~~d~~~e~~  344 (725)
                      ||.|+| .|.+|..++..|++.|++|++.+|+++.+
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~   37 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQV   37 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGS
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccch
Confidence            799998 59999999999999999999999998653

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=94.20  E-value=0.06  Score=55.78  Aligned_cols=34  Identities=18%  Similarity=0.269  Sum_probs=31.7

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCh
Q 004891          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS  341 (725)
Q Consensus       308 ~~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~  341 (725)
                      +++|.|+|+ |.+|+.++..|++.|++|++.+|++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   38 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPL   38 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCC
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCc
Confidence            568999996 9999999999999999999999986

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=94.18  E-value=0.037  Score=55.71  Aligned_cols=43  Identities=28%  Similarity=0.397  Sum_probs=36.0

Q ss_pred             ceEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHH
Q 004891          309 RKVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (725)
Q Consensus       309 ~kIaVI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i  351 (725)
                      .|+++| |+ +-||.++|..|++.|.+|+++|++++.+++..+.+
T Consensus         7 gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i   51 (254)
T 4fn4_A            7 NKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQEL   51 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHH
Confidence            367766 44 77999999999999999999999999988776544

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=94.07  E-value=0.043  Score=58.67  Aligned_cols=70  Identities=23%  Similarity=0.250  Sum_probs=45.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHH--------CCCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccccc
Q 004891          310 KVAVIGGGLMGSGIATAHIL--------NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  380 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~--------~G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~  380 (725)
                      ||||||+|.||..-+..+..        .+.+|+ ++|++++++++..++                      .+.-...+
T Consensus        27 rvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~----------------------~g~~~~y~   84 (393)
T 4fb5_A           27 GIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGE----------------------FGFEKATA   84 (393)
T ss_dssp             EEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHH----------------------HTCSEEES
T ss_pred             cEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHH----------------------hCCCeecC
Confidence            79999999999876655533        245654 789999887765432                      12223456


Q ss_pred             Cccc-c--cCCCEEEEeccCChHH
Q 004891          381 DYSE-F--KDVDMVIEAVIESVPL  401 (725)
Q Consensus       381 ~~~~-l--~~aDlVIeavpe~~~~  401 (725)
                      |++. +  .+.|+|++|+|.....
T Consensus        85 d~~ell~~~~iDaV~IatP~~~H~  108 (393)
T 4fb5_A           85 DWRALIADPEVDVVSVTTPNQFHA  108 (393)
T ss_dssp             CHHHHHHCTTCCEEEECSCGGGHH
T ss_pred             CHHHHhcCCCCcEEEECCChHHHH
Confidence            6633 3  4689999999966654

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=94.04  E-value=0.074  Score=55.21  Aligned_cols=36  Identities=19%  Similarity=0.364  Sum_probs=28.9

Q ss_pred             cceEEEEcCCCCcHHHHHHHHH--CCCcE-EEEeCChHH
Q 004891          308 VRKVAVIGGGLMGSGIATAHIL--NNIYV-VLKEVNSEY  343 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~--~G~~V-~~~d~~~e~  343 (725)
                      ..||+|||+|.||..++..+.+  .+.++ .++|+++++
T Consensus         4 ~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~   42 (312)
T 1nvm_B            4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAAS   42 (312)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTC
T ss_pred             CCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhh
Confidence            3589999999999999999865  35554 578998776

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=94.00  E-value=0.12  Score=54.22  Aligned_cols=37  Identities=22%  Similarity=0.400  Sum_probs=28.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC-CCcEE-EEeCChHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLL  345 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~  345 (725)
                      .||||+|+|.||..+++.+.+. +++|+ +.|++++...
T Consensus         2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~   40 (337)
T 1cf2_P            2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEA   40 (337)
T ss_dssp             EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHH
T ss_pred             eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHH
Confidence            5899999999999999999874 56664 4577755443

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=93.92  E-value=0.088  Score=51.88  Aligned_cols=44  Identities=18%  Similarity=0.200  Sum_probs=36.7

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHH
Q 004891          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (725)
Q Consensus       308 ~~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i  351 (725)
                      +++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.+
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   46 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHEL   46 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            356777776 78999999999999999999999998877765433

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=93.92  E-value=0.046  Score=56.67  Aligned_cols=34  Identities=15%  Similarity=0.283  Sum_probs=31.6

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSE  342 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e  342 (725)
                      ++|.|+|+ |.+|+.++..|++.|++|++.+|+++
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~   46 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS   46 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCC
Confidence            58999996 99999999999999999999999875

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=93.89  E-value=0.042  Score=57.98  Aligned_cols=70  Identities=13%  Similarity=0.046  Sum_probs=45.7

Q ss_pred             ceEEEEcCCCCcHHHHHH-H-HH-CCCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcc-
Q 004891          309 RKVAVIGGGLMGSGIATA-H-IL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-  383 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~-l-~~-~G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-  383 (725)
                      .||+|||+|.||..+... + .. .+++|+ ++|+++++.+...           +            ...+...++++ 
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~-----------~------------~~~~~~~~~~~~   59 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAP-----------I------------YSHIHFTSDLDE   59 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSG-----------G------------GTTCEEESCTHH
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHH-----------h------------cCCCceECCHHH
Confidence            589999999999875433 3 32 377777 8899987642210           0            11234456663 


Q ss_pred             ccc--CCCEEEEeccCChHH
Q 004891          384 EFK--DVDMVIEAVIESVPL  401 (725)
Q Consensus       384 ~l~--~aDlVIeavpe~~~~  401 (725)
                      .+.  ++|+|++|+|.....
T Consensus        60 ll~~~~~D~V~i~tp~~~h~   79 (345)
T 3f4l_A           60 VLNDPDVKLVVVCTHADSHF   79 (345)
T ss_dssp             HHTCTTEEEEEECSCGGGHH
T ss_pred             HhcCCCCCEEEEcCChHHHH
Confidence            344  489999999966553

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=93.86  E-value=0.1  Score=46.00  Aligned_cols=81  Identities=9%  Similarity=-0.008  Sum_probs=58.2

Q ss_pred             cceEEEEcC----CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcc
Q 004891          308 VRKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (725)
Q Consensus       308 ~~kIaVIG~----G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (725)
                      .++|+|||+    +..|..+...|.+.||+|+.++...+.+                             ....+..+++
T Consensus         4 p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i-----------------------------~G~~~y~sl~   54 (122)
T 3ff4_A            4 MKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEV-----------------------------LGKTIINERP   54 (122)
T ss_dssp             CCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEE-----------------------------TTEECBCSCC
T ss_pred             CCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcC-----------------------------CCeeccCChH
Confidence            478999998    5679999999999999999988764321                             1234455666


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEE
Q 004891          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  420 (725)
Q Consensus       384 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~  420 (725)
                      ++.+.|+++.++|  .+...++++++.+. ....++.
T Consensus        55 dlp~vDlavi~~p--~~~v~~~v~e~~~~-g~k~v~~   88 (122)
T 3ff4_A           55 VIEGVDTVTLYIN--PQNQLSEYNYILSL-KPKRVIF   88 (122)
T ss_dssp             CCTTCCEEEECSC--HHHHGGGHHHHHHH-CCSEEEE
T ss_pred             HCCCCCEEEEEeC--HHHHHHHHHHHHhc-CCCEEEE
Confidence            6655999999998  66666777776554 2234543

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=93.86  E-value=0.077  Score=55.57  Aligned_cols=100  Identities=17%  Similarity=0.200  Sum_probs=60.3

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHC-CCcEEEEeCCh---HHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccccc--
Q 004891          308 VRKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNS---EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL--  380 (725)
Q Consensus       308 ~~kIaVIG~-G~mG~~iA~~l~~~-G~~V~~~d~~~---e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~--  380 (725)
                      |.||+|+|+ |.+|..+...|.+. .+++..+..+.   ..-+..    ......+  .+.          ..+.+..  
T Consensus         4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~----~~~~p~~--~~~----------~~~~v~~~~   67 (337)
T 3dr3_A            4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLI----SDLHPQL--KGI----------VELPLQPMS   67 (337)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBH----HHHCGGG--TTT----------CCCBEEEES
T ss_pred             ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCch----HHhCccc--cCc----------cceeEeccC
Confidence            579999995 99999999999884 56777665433   211111    0000000  010          0122222  


Q ss_pred             Ccccc-cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh
Q 004891          381 DYSEF-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL  428 (725)
Q Consensus       381 ~~~~l-~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~  428 (725)
                      +.+.+ +++|+||+|+|  .....++..++.   ..++.++++++...+
T Consensus        68 ~~~~~~~~~Dvvf~a~p--~~~s~~~~~~~~---~~g~~vIDlSa~fR~  111 (337)
T 3dr3_A           68 DISEFSPGVDVVFLATA--HEVSHDLAPQFL---EAGCVVFDLSGAFRV  111 (337)
T ss_dssp             SGGGTCTTCSEEEECSC--HHHHHHHHHHHH---HTTCEEEECSSTTSS
T ss_pred             CHHHHhcCCCEEEECCC--hHHHHHHHHHHH---HCCCEEEEcCCcccc
Confidence            34455 89999999999  444455555543   467888898887644

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=93.84  E-value=0.1  Score=54.84  Aligned_cols=36  Identities=19%  Similarity=0.224  Sum_probs=31.4

Q ss_pred             CCcceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCh
Q 004891          306 RGVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS  341 (725)
Q Consensus       306 ~~~~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~  341 (725)
                      |..++|.|+|+ |.+|+.++..|++.|++|++++|++
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   44 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPG   44 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            34568999998 9999999999999999999999976

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=93.82  E-value=0.044  Score=57.58  Aligned_cols=35  Identities=20%  Similarity=0.197  Sum_probs=31.7

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChH
Q 004891          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSE  342 (725)
Q Consensus       308 ~~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e  342 (725)
                      .++|.|.|+ |.+|+.++..|++.|++|++++++..
T Consensus        25 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   60 (351)
T 3ruf_A           25 PKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFST   60 (351)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            468999996 99999999999999999999999654

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=93.70  E-value=0.071  Score=54.77  Aligned_cols=34  Identities=24%  Similarity=0.289  Sum_probs=31.6

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCh
Q 004891          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS  341 (725)
Q Consensus       308 ~~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~  341 (725)
                      +++|.|+|+ |.+|+.++..|++.|++|++.+|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   38 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES   38 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCc
Confidence            578999997 9999999999999999999999974

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=93.59  E-value=0.22  Score=54.53  Aligned_cols=35  Identities=20%  Similarity=0.121  Sum_probs=32.3

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChH
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e  342 (725)
                      .+||.|||.|..|.+.|..|.+.|++|+++|.++.
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~   43 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPF   43 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCG
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence            47999999999999999999999999999999653

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=93.49  E-value=0.93  Score=50.29  Aligned_cols=158  Identities=16%  Similarity=0.111  Sum_probs=94.7

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEE
Q 004891           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (725)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav  105 (725)
                      -.++++..+...+.++.++.. ++-+|.|.-.++ |..|.+-.          ...+......++ .++.++..|+|+.|
T Consensus       366 G~l~~~~a~Kaarfi~~c~~~-~iPlv~lvDtpG-f~~G~~~E----------~~Gi~~~gAk~~-~a~~~a~vP~itvi  432 (555)
T 3u9r_B          366 GILFAEAAQKGAHFIELACQR-GIPLLFLQNITG-FMVGQKYE----------AGGIAKHGAKLV-TAVACARVPKFTVL  432 (555)
T ss_dssp             SSBCHHHHHHHHHHHHHHHHH-TCCEEEEEEECC-BCCSHHHH----------HTTHHHHHHHHH-HHHHHCCSCEEEEE
T ss_pred             CccCHHHHHHHHHHHHHHhcC-CCCEEEEecCcC-CCCCHHHH----------HHHHHHHHHHHH-HHHHhCCCCEEEEE
Confidence            578899988888888877653 566777754332 44443321          112233455666 66899999999999


Q ss_pred             cccccchhhHHhh----hcCEEEeeCCceEeCcccccCCCCCchhhchHh---hh-h-------CH--HHHH-HHHH--c
Q 004891          106 EGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLP---RL-V-------GL--SKAI-EMML--L  165 (725)
Q Consensus       106 ~G~a~GgG~~lal----acD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~---r~-v-------G~--~~a~-~l~l--~  165 (725)
                      -|.++|||..-+.    .+|+++|.+++.++.       +.+-+.+..|-   +. +       ..  ..+. +.+.  -
T Consensus       433 ~g~~~Ggg~~am~~~~~~~d~~~a~p~A~i~V-------mgpegaa~il~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~y  505 (555)
T 3u9r_B          433 IGGSFGAGNYGMCGRAYDPRFLWMWPNARIGV-------MGGEQAAGVLAQVKREQAERAGQQLGVEEEAKIKAPILEQY  505 (555)
T ss_dssp             EEEEETTHHHHTTCGGGCCSEEEECTTCEEES-------SCHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHH
T ss_pred             eCCccchhhHhhcCccCCCCeEEEcCCcEEEc-------CCHHHHHHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHH
Confidence            9998888653332    379999887777763       33333333322   10 0       00  0000 0000  0


Q ss_pred             CCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhc
Q 004891          166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR  203 (725)
Q Consensus       166 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~  203 (725)
                      -+..++-.|.+.|+||.|+++.+.........+.+.++
T Consensus       506 ~~~~~p~~aa~r~~vD~vIdP~~TR~~l~~~l~~~~~~  543 (555)
T 3u9r_B          506 EHQGHPYYSSARLWDDGVIDPAQTREVLALALSAALNA  543 (555)
T ss_dssp             HHHHSHHHHHHTTSSSCBCCGGGHHHHHHHHHHHHTTS
T ss_pred             HHhCCHHHHhhccccCcccChHHHHHHHHHHHHHHhcC
Confidence            11236667778899999999888766655555444443

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=93.48  E-value=0.094  Score=52.65  Aligned_cols=41  Identities=22%  Similarity=0.148  Sum_probs=34.6

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~  349 (725)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   49 (260)
T 2z1n_A            8 KLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAAS   49 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            45667766 899999999999999999999999987766543

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=93.47  E-value=0.033  Score=55.03  Aligned_cols=32  Identities=28%  Similarity=0.329  Sum_probs=30.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCh
Q 004891          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (725)
                      .|+|||+|.-|.+.|..|+++|++|+++|.++
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~   35 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR   35 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            59999999999999999999999999999864

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=93.46  E-value=0.055  Score=53.94  Aligned_cols=40  Identities=20%  Similarity=0.204  Sum_probs=34.2

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~  348 (725)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus        12 k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~   52 (254)
T 2wsb_A           12 ACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAA   52 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            56777776 89999999999999999999999988766543

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=93.46  E-value=0.1  Score=52.40  Aligned_cols=42  Identities=17%  Similarity=0.247  Sum_probs=35.0

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  350 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~  350 (725)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~   50 (263)
T 3ai3_A            8 KVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARS   50 (263)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence            45667766 8999999999999999999999999877665443

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=93.46  E-value=0.1  Score=54.67  Aligned_cols=86  Identities=14%  Similarity=0.201  Sum_probs=49.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHH--HHHHhhcCcccccCc-c
Q 004891          309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD--KANNALKMLKGVLDY-S  383 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~--~~~~~~~~i~~~~~~-~  383 (725)
                      .||||+|+|.||..++..+.+. +.+|+ +.|++++.+....+...     ....+.+...  ....  +.+....++ +
T Consensus         3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g-----~~~~~~~~~~v~~~~~--~~~~v~~d~~~   75 (334)
T 2czc_A            3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELG-----IPVYAASEEFIPRFEK--EGFEVAGTLND   75 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTT-----CCEEESSGGGHHHHHH--HTCCCSCBHHH
T ss_pred             cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcC-----ccccccccccceeccC--CceEEcCcHHH
Confidence            5899999999999999999876 45654 66887766554332100     0000000000  0000  112333444 3


Q ss_pred             cccCCCEEEEeccCChHH
Q 004891          384 EFKDVDMVIEAVIESVPL  401 (725)
Q Consensus       384 ~l~~aDlVIeavpe~~~~  401 (725)
                      .+.++|+|++|.|.....
T Consensus        76 l~~~vDvV~~aTp~~~h~   93 (334)
T 2czc_A           76 LLEKVDIIVDATPGGIGA   93 (334)
T ss_dssp             HHTTCSEEEECCSTTHHH
T ss_pred             hccCCCEEEECCCccccH
Confidence            346899999999966543

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=93.45  E-value=0.1  Score=52.10  Aligned_cols=43  Identities=26%  Similarity=0.196  Sum_probs=35.6

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i  351 (725)
                      ++|.|.|+ |-+|.++|..|++.|++|++.+++++.++...+.+
T Consensus        13 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~   56 (252)
T 3f1l_A           13 RIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHI   56 (252)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            45666666 78999999999999999999999998877765443

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=93.44  E-value=0.21  Score=49.84  Aligned_cols=39  Identities=13%  Similarity=0.244  Sum_probs=31.6

Q ss_pred             cceEEEE-c-CCCCcHHHHHHHHHCCCcEEEEeCChHHHHH
Q 004891          308 VRKVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLK  346 (725)
Q Consensus       308 ~~kIaVI-G-~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~  346 (725)
                      |+|+.|| | .+-+|.++|..|++.|++|++.|++++.++.
T Consensus         1 MnK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~   41 (247)
T 3ged_A            1 MNRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSAD   41 (247)
T ss_dssp             -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            3455555 5 4789999999999999999999999887654

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=93.37  E-value=0.089  Score=53.67  Aligned_cols=42  Identities=29%  Similarity=0.286  Sum_probs=34.2

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHH
Q 004891          310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (725)
Q Consensus       310 kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i  351 (725)
                      +|.|.|+ |-+|.++|..|++.|++|++.+++++.++...+.+
T Consensus        35 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~   77 (281)
T 4dry_A           35 IALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEI   77 (281)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            4445565 88999999999999999999999998877665433

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=93.34  E-value=0.068  Score=54.08  Aligned_cols=43  Identities=19%  Similarity=0.251  Sum_probs=35.0

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i  351 (725)
                      ++|.|.|+ |-+|.++|..|++.|++|++.+++++.++...+.+
T Consensus         5 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l   48 (264)
T 3tfo_A            5 KVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEI   48 (264)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            34555565 78999999999999999999999998877765443

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=93.34  E-value=0.056  Score=56.37  Aligned_cols=36  Identities=17%  Similarity=0.231  Sum_probs=30.7

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcE-EEEeCChHH
Q 004891          308 VRKVAVIGG-GLMGSGIATAHILNNIYV-VLKEVNSEY  343 (725)
Q Consensus       308 ~~kIaVIG~-G~mG~~iA~~l~~~G~~V-~~~d~~~e~  343 (725)
                      |.||||||+ |.||...+..+.+.|.++ .++|++++.
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~   40 (318)
T 3oa2_A            3 MKNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSV   40 (318)
T ss_dssp             CCEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCC
T ss_pred             ceEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHH
Confidence            579999999 799999999999888865 478998764

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=93.23  E-value=0.045  Score=53.96  Aligned_cols=39  Identities=18%  Similarity=0.077  Sum_probs=33.0

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~  347 (725)
                      ++|.|.|+ |.+|..++..|++.|++|++.+++++.++..
T Consensus         6 k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~   45 (234)
T 2ehd_A            6 GAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQAL   45 (234)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            45667765 8999999999999999999999998876554

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=93.21  E-value=0.22  Score=57.30  Aligned_cols=69  Identities=17%  Similarity=0.173  Sum_probs=50.6

Q ss_pred             CCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCC--C----
Q 004891           97 CKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI--T----  170 (725)
Q Consensus        97 ~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~--~----  170 (725)
                      ...|+|++|.|.|.|||..++..||++|+.+++.+.+.                    |+... +. .+|+.+  +    
T Consensus       258 ~~iP~IsvV~G~~~GGgAy~~~lgD~vI~~~~a~i~lt--------------------Gp~vi-~~-~~Ge~vy~s~e~L  315 (793)
T 2x24_A          258 DEIVTISMVSCRALGIGAYLVRLGQRVIQVENSHIILT--------------------GATAL-NK-VLGRDVYTSNNQL  315 (793)
T ss_dssp             HHSCEEEEECSEEETHHHHHHHHTCCEEEETTCEEESS--------------------CHHHH-HH-HHSSCCCSCHHHH
T ss_pred             CCCCEEEEEecCCchHHHHHHhhCCeEEEeccccEEec--------------------CHHHH-HH-hcCCcccCChhhh
Confidence            46999999999999999999999999999998766542                    22211 11 345554  3    


Q ss_pred             --HHHHHHcCCcceecCcc
Q 004891          171 --SEEGWKLGLIDAVVTSE  187 (725)
Q Consensus       171 --a~eA~~~Glv~~vv~~~  187 (725)
                        ++-....|++|.+++.+
T Consensus       316 GGa~v~~~~Gv~d~vv~dd  334 (793)
T 2x24_A          316 GGVQIMHHNGVSHVTVPDD  334 (793)
T ss_dssp             HSHHHHTTTTSCSEEESSH
T ss_pred             ccHHHHHhcCceEEEeCCH
Confidence              22256799999999764

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=93.20  E-value=0.098  Score=53.83  Aligned_cols=34  Identities=24%  Similarity=0.296  Sum_probs=31.4

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCh
Q 004891          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS  341 (725)
Q Consensus       308 ~~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~  341 (725)
                      +++|.|+|+ |.+|+.++..|++.|++|++.+|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   38 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE   38 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence            568999996 9999999999999999999999983

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=93.20  E-value=0.13  Score=54.02  Aligned_cols=35  Identities=20%  Similarity=0.288  Sum_probs=32.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  343 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~  343 (725)
                      ++|+|+|.|.+|...|..+...|.+|+++|+++++
T Consensus       176 ktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~  210 (355)
T 1c1d_A          176 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTER  210 (355)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccH
Confidence            68999999999999999999999999999999764

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=93.19  E-value=0.096  Score=54.89  Aligned_cols=30  Identities=20%  Similarity=0.307  Sum_probs=24.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC-CCcEEEEe
Q 004891          309 RKVAVIGGGLMGSGIATAHILN-NIYVVLKE  338 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~-G~~V~~~d  338 (725)
                      .||||+|+|.||..+++.+.+. +++|+.++
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~   34 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQSEDVELVAVN   34 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEE
T ss_pred             eEEEEECcCHHHHHHHHHHhCCCCeEEEEEE
Confidence            5899999999999999999876 56766543

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=93.12  E-value=0.064  Score=57.39  Aligned_cols=73  Identities=16%  Similarity=0.129  Sum_probs=48.4

Q ss_pred             CcceEEEEc-CCCCcHH-HH----HHHHHCC-CcE----------EEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHH
Q 004891          307 GVRKVAVIG-GGLMGSG-IA----TAHILNN-IYV----------VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKA  369 (725)
Q Consensus       307 ~~~kIaVIG-~G~mG~~-iA----~~l~~~G-~~V----------~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~  369 (725)
                      +..||+||| +|.||.. .+    ..+.+.+ ..+          .++|+++++++...+.                   
T Consensus         5 ~~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~-------------------   65 (383)
T 3oqb_A            5 QRLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKR-------------------   65 (383)
T ss_dssp             EEEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHH-------------------
T ss_pred             ceeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHH-------------------
Confidence            345899999 9999998 66    6666544 232          4999999987664321                   


Q ss_pred             HHhhcCcccccCcc-cc--cCCCEEEEeccCChHH
Q 004891          370 NNALKMLKGVLDYS-EF--KDVDMVIEAVIESVPL  401 (725)
Q Consensus       370 ~~~~~~i~~~~~~~-~l--~~aDlVIeavpe~~~~  401 (725)
                         .+.-...++++ .+  .+.|+|++|+|.....
T Consensus        66 ---~~~~~~~~~~~~ll~~~~iD~V~i~tp~~~h~   97 (383)
T 3oqb_A           66 ---FNIARWTTDLDAALADKNDTMFFDAATTQARP   97 (383)
T ss_dssp             ---TTCCCEESCHHHHHHCSSCCEEEECSCSSSSH
T ss_pred             ---hCCCcccCCHHHHhcCCCCCEEEECCCchHHH
Confidence               11112345653 33  4589999999966553

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=93.10  E-value=0.16  Score=52.77  Aligned_cols=36  Identities=11%  Similarity=0.032  Sum_probs=30.8

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcE-EEEeCChHH
Q 004891          308 VRKVAVIGG-GLMGSGIATAHILNNIYV-VLKEVNSEY  343 (725)
Q Consensus       308 ~~kIaVIG~-G~mG~~iA~~l~~~G~~V-~~~d~~~e~  343 (725)
                      |.||||||+ |.||...+..+.+.+.+| .++|++++.
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~   40 (312)
T 3o9z_A            3 MTRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNV   40 (312)
T ss_dssp             CCEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCC
T ss_pred             ceEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHH
Confidence            579999999 789999999999988865 478998775

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=93.08  E-value=0.11  Score=51.81  Aligned_cols=39  Identities=23%  Similarity=0.151  Sum_probs=32.6

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891          310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (725)
Q Consensus       310 kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~  348 (725)
                      +|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus         2 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~   41 (248)
T 3asu_A            2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELK   41 (248)
T ss_dssp             EEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4555565 89999999999999999999999988766544

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=93.06  E-value=0.039  Score=59.06  Aligned_cols=34  Identities=32%  Similarity=0.425  Sum_probs=31.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e  342 (725)
                      .||.|||+|.-|...|..|+++|++|+++|++++
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~   35 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA   35 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            4899999999999999999999999999998653

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=93.06  E-value=0.066  Score=53.83  Aligned_cols=41  Identities=15%  Similarity=0.242  Sum_probs=34.6

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~  349 (725)
                      ++|.|.|+ |-+|..+|..|++.|++|++.+++++.++...+
T Consensus         9 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   50 (259)
T 4e6p_A            9 KSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAA   50 (259)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            45667776 899999999999999999999999988766543

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=93.04  E-value=0.083  Score=55.22  Aligned_cols=64  Identities=19%  Similarity=0.149  Sum_probs=44.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC---------CCcE-EEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILN---------NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG  378 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~---------G~~V-~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~  378 (725)
                      .||+|||+|.||+.++..+.+.         +.+| .++|++.++.                ++ +.         ....
T Consensus         4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~----------------~~-~~---------~~~~   57 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKP----------------RA-IP---------QELL   57 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSC----------------CS-SC---------GGGE
T ss_pred             eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHh----------------hc-cC---------cccc
Confidence            5899999999999999998876         3455 4678875431                11 11         1123


Q ss_pred             ccCcc-cccCCCEEEEeccCCh
Q 004891          379 VLDYS-EFKDVDMVIEAVIESV  399 (725)
Q Consensus       379 ~~~~~-~l~~aDlVIeavpe~~  399 (725)
                      ++|++ .+ +.|+|++|+|...
T Consensus        58 ~~d~~~ll-~iDvVve~t~~~~   78 (332)
T 2ejw_A           58 RAEPFDLL-EADLVVEAMGGVE   78 (332)
T ss_dssp             ESSCCCCT-TCSEEEECCCCSH
T ss_pred             cCCHHHHh-CCCEEEECCCCcH
Confidence            55664 45 9999999998553

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=93.02  E-value=0.13  Score=51.88  Aligned_cols=41  Identities=29%  Similarity=0.264  Sum_probs=34.3

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~  349 (725)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus        22 k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   63 (267)
T 1vl8_A           22 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQ   63 (267)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            45666665 899999999999999999999999887766544

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=92.97  E-value=0.23  Score=49.50  Aligned_cols=31  Identities=19%  Similarity=0.385  Sum_probs=26.2

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHC-CCcEE-EEeCC
Q 004891          310 KVAVIGG-GLMGSGIATAHILN-NIYVV-LKEVN  340 (725)
Q Consensus       310 kIaVIG~-G~mG~~iA~~l~~~-G~~V~-~~d~~  340 (725)
                      ||+|+|+ |.||..++..+.+. |++|+ ++|++
T Consensus         2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~   35 (245)
T 1p9l_A            2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG   35 (245)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC
Confidence            7999997 99999999998865 89887 56654

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=92.95  E-value=0.072  Score=53.70  Aligned_cols=41  Identities=27%  Similarity=0.318  Sum_probs=33.6

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~  349 (725)
                      ++|-|.|+ |-+|.++|..|++.|++|++.+++++.++...+
T Consensus        11 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~   52 (262)
T 3pk0_A           11 RSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVA   52 (262)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            34445554 889999999999999999999999988776544

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=92.93  E-value=0.041  Score=57.52  Aligned_cols=36  Identities=28%  Similarity=0.459  Sum_probs=28.3

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHC---------CCcEE-EEeCChHH
Q 004891          308 VRKVAVIGGGLMGSGIATAHILN---------NIYVV-LKEVNSEY  343 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~---------G~~V~-~~d~~~e~  343 (725)
                      |.||+|||+|.||+.++..+.+.         +.+|+ ++|++++.
T Consensus         2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~   47 (327)
T 3do5_A            2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSI   47 (327)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEE
T ss_pred             cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHh
Confidence            46899999999999999999875         45554 66777543

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=92.92  E-value=0.13  Score=53.62  Aligned_cols=43  Identities=21%  Similarity=0.382  Sum_probs=36.6

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i  351 (725)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.+
T Consensus         9 k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l   52 (319)
T 3ioy_A            9 RTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATL   52 (319)
T ss_dssp             CEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            46777776 89999999999999999999999999887765443

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=92.91  E-value=0.11  Score=52.82  Aligned_cols=41  Identities=17%  Similarity=0.097  Sum_probs=33.7

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~  349 (725)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~   63 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAG   63 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            44555565 899999999999999999999999887765543

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=92.89  E-value=0.085  Score=52.86  Aligned_cols=41  Identities=17%  Similarity=0.175  Sum_probs=34.0

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~  349 (725)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   44 (256)
T 1geg_A            3 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVAS   44 (256)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            35666665 889999999999999999999999887665543

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=92.89  E-value=0.078  Score=52.82  Aligned_cols=39  Identities=13%  Similarity=0.156  Sum_probs=33.5

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~  347 (725)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++..
T Consensus         6 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~   45 (245)
T 1uls_A            6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREA   45 (245)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            46777776 8899999999999999999999998876554

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=92.86  E-value=0.064  Score=57.23  Aligned_cols=70  Identities=19%  Similarity=0.141  Sum_probs=48.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCC--------CcE-EEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccccc
Q 004891          310 KVAVIGGGLMGSGIATAHILNN--------IYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  380 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G--------~~V-~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~  380 (725)
                      ||||||+|.||..-+..+.+..        .+| .++|+++++++...++                      ++.-...+
T Consensus         8 rvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~----------------------~g~~~~~~   65 (390)
T 4h3v_A            8 GIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGK----------------------LGWSTTET   65 (390)
T ss_dssp             EEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHH----------------------HTCSEEES
T ss_pred             cEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHH----------------------cCCCcccC
Confidence            7999999999998887776532        244 4789999987765432                      12223456


Q ss_pred             Ccc-cc--cCCCEEEEeccCChHH
Q 004891          381 DYS-EF--KDVDMVIEAVIESVPL  401 (725)
Q Consensus       381 ~~~-~l--~~aDlVIeavpe~~~~  401 (725)
                      |++ .+  .+.|+|++|+|.....
T Consensus        66 d~~~ll~~~~iDaV~I~tP~~~H~   89 (390)
T 4h3v_A           66 DWRTLLERDDVQLVDVCTPGDSHA   89 (390)
T ss_dssp             CHHHHTTCTTCSEEEECSCGGGHH
T ss_pred             CHHHHhcCCCCCEEEEeCChHHHH
Confidence            663 34  4689999999966654

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=92.77  E-value=0.11  Score=51.82  Aligned_cols=43  Identities=28%  Similarity=0.274  Sum_probs=36.2

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i  351 (725)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.+
T Consensus        10 k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~   53 (253)
T 3qiv_A           10 KVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQI   53 (253)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH
Confidence            56667776 88999999999999999999999998877765443

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=92.73  E-value=0.059  Score=54.32  Aligned_cols=37  Identities=11%  Similarity=0.094  Sum_probs=31.1

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLL  345 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~  345 (725)
                      ++|.|.|+ |-+|..+|..|++.|++|++.+++++.+.
T Consensus        28 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~   65 (260)
T 3gem_A           28 APILITGASQRVGLHCALRLLEHGHRVIISYRTEHASV   65 (260)
T ss_dssp             CCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHH
Confidence            45556665 88999999999999999999999987653

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=92.70  E-value=0.13  Score=50.85  Aligned_cols=41  Identities=17%  Similarity=0.126  Sum_probs=34.0

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~  349 (725)
                      ++|.|.|+ |.+|..++..|++.|++|++.+++++.++...+
T Consensus         8 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~   49 (248)
T 2pnf_A            8 KVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAE   49 (248)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH
Confidence            45666665 899999999999999999999999887665443

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=92.69  E-value=0.068  Score=56.51  Aligned_cols=34  Identities=21%  Similarity=0.284  Sum_probs=31.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCh
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (725)
                      ...|.|||+|.+|.++|..|++.|++|+++|...
T Consensus         6 ~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~   39 (363)
T 1c0p_A            6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (363)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence            3579999999999999999999999999999763

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=92.69  E-value=0.093  Score=55.01  Aligned_cols=36  Identities=17%  Similarity=0.012  Sum_probs=33.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLL  345 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~  345 (725)
                      ++|.|+|.|..|..++..|.+.|+ |+++|+|++.++
T Consensus       116 ~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~  151 (336)
T 1lnq_A          116 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK  151 (336)
T ss_dssp             CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh
Confidence            579999999999999999999999 999999999876

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=92.68  E-value=0.096  Score=58.49  Aligned_cols=36  Identities=19%  Similarity=0.209  Sum_probs=32.7

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHH
Q 004891          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEY  343 (725)
Q Consensus       308 ~~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~  343 (725)
                      ++||.|.|+ |.+|+.++..|++.|++|+++++++..
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~  183 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPK  183 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence            468999995 999999999999999999999998754

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=92.67  E-value=0.11  Score=52.44  Aligned_cols=40  Identities=20%  Similarity=0.101  Sum_probs=34.5

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~  348 (725)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus        32 k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~   72 (272)
T 1yb1_A           32 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETA   72 (272)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHH
Confidence            56778876 89999999999999999999999988766544

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=92.65  E-value=0.12  Score=52.07  Aligned_cols=42  Identities=21%  Similarity=0.177  Sum_probs=35.0

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  350 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~  350 (725)
                      +++.|.|+ |-+|..+|..|++.|++|++.+++++.++...+.
T Consensus        12 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~   54 (264)
T 3ucx_A           12 KVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQ   54 (264)
T ss_dssp             CEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             cEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHH
Confidence            45666666 7899999999999999999999999887766543

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=92.65  E-value=0.1  Score=52.19  Aligned_cols=40  Identities=23%  Similarity=0.315  Sum_probs=34.4

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~  348 (725)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus        14 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~   54 (260)
T 3awd_A           14 RVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAV   54 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            56777776 89999999999999999999999988766544

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=92.62  E-value=0.084  Score=55.88  Aligned_cols=32  Identities=28%  Similarity=0.215  Sum_probs=30.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN  340 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~  340 (725)
                      .||.|+|+|.+|.++|..+...|. +|+++|++
T Consensus       193 ~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          193 VKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            689999999999999999999998 89999998

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=92.62  E-value=0.099  Score=52.98  Aligned_cols=41  Identities=17%  Similarity=0.080  Sum_probs=34.0

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHH
Q 004891          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  350 (725)
Q Consensus       310 kIaVI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~  350 (725)
                      |+++| |+ |-+|..+|..|++.|++|++.+++++.++...+.
T Consensus        29 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~   71 (270)
T 3ftp_A           29 QVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAA   71 (270)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            55555 54 8899999999999999999999999887765543

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=92.62  E-value=0.095  Score=52.41  Aligned_cols=43  Identities=23%  Similarity=0.174  Sum_probs=35.6

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i  351 (725)
                      +++-|.|+ |-+|.++|..|++.|++|++.+++++.++...+.+
T Consensus         8 k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~   51 (250)
T 3nyw_A            8 GLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEI   51 (250)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            34556666 88999999999999999999999999887765543

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=92.59  E-value=0.075  Score=53.51  Aligned_cols=39  Identities=23%  Similarity=0.193  Sum_probs=33.4

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~  347 (725)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++..
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   47 (260)
T 1nff_A            8 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAM   47 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            45777776 8999999999999999999999998876554

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=92.58  E-value=0.098  Score=53.12  Aligned_cols=40  Identities=23%  Similarity=0.204  Sum_probs=34.2

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~  348 (725)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus        33 k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~   73 (279)
T 1xg5_A           33 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELA   73 (279)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHH
Confidence            46777766 89999999999999999999999988766544

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=92.57  E-value=0.11  Score=52.51  Aligned_cols=41  Identities=27%  Similarity=0.269  Sum_probs=34.4

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~  349 (725)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus        14 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   55 (267)
T 1iy8_A           14 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKA   55 (267)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            45666665 899999999999999999999999987766543

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=92.57  E-value=0.081  Score=52.82  Aligned_cols=40  Identities=15%  Similarity=0.015  Sum_probs=32.9

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~  348 (725)
                      +++-|.|+ |-+|..+|..|++.|++|++.+++++.++...
T Consensus        10 k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~   50 (248)
T 3op4_A           10 KVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAIS   50 (248)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            34445555 88999999999999999999999998876654

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=92.56  E-value=0.1  Score=52.02  Aligned_cols=41  Identities=17%  Similarity=0.095  Sum_probs=34.4

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~  349 (725)
                      +++.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus         8 k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~   49 (247)
T 2jah_A            8 KVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGD   49 (247)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            45667766 899999999999999999999999887766543

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=92.56  E-value=0.14  Score=51.67  Aligned_cols=43  Identities=16%  Similarity=0.146  Sum_probs=35.7

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i  351 (725)
                      +++-|.|+ |-+|..+|..|++.|++|++.+++++.++...+.+
T Consensus         9 k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l   52 (265)
T 3lf2_A            9 AVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESAL   52 (265)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            45666665 88999999999999999999999998877765544

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=92.49  E-value=0.15  Score=53.91  Aligned_cols=101  Identities=19%  Similarity=0.148  Sum_probs=56.3

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHHCC-CcEEEEeCChHHHHHHHHHHHHHHHhhHHcC---CCCHHHHHHhhcCcccc-cCc
Q 004891          309 RKVAVIG-GGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRG---KLTQDKANNALKMLKGV-LDY  382 (725)
Q Consensus       309 ~kIaVIG-~G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g---~~~~~~~~~~~~~i~~~-~~~  382 (725)
                      .||+|+| .|.+|..+++.|.++. ++|+.+..++....+..       +......   .+....     ..+.+. .+.
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~-------~~~~~~~~~~~~~~~~-----~~~~~~~~~~   76 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKY-------KDACYWFQDRDIPENI-----KDMVVIPTDP   76 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBH-------HHHSCCCCSSCCCHHH-----HTCBCEESCT
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccH-------HHhcccccccccccCc-----eeeEEEeCCH
Confidence            6899999 7999999999998764 57776643322111100       0000000   000100     012111 233


Q ss_pred             ccc-c-CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC
Q 004891          383 SEF-K-DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI  426 (725)
Q Consensus       383 ~~l-~-~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~  426 (725)
                      +.+ + ++|+||+|+|  .....++...+.   ..++.|+++++..
T Consensus        77 ~~~~~~~~DvV~~atp--~~~~~~~a~~~~---~aG~~VId~s~~~  117 (354)
T 1ys4_A           77 KHEEFEDVDIVFSALP--SDLAKKFEPEFA---KEGKLIFSNASAY  117 (354)
T ss_dssp             TSGGGTTCCEEEECCC--HHHHHHHHHHHH---HTTCEEEECCSTT
T ss_pred             HHHhcCCCCEEEECCC--chHHHHHHHHHH---HCCCEEEECCchh
Confidence            334 6 8999999998  444445544443   3567788877754

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=92.48  E-value=0.31  Score=50.04  Aligned_cols=36  Identities=19%  Similarity=0.254  Sum_probs=31.8

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHH
Q 004891          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEY  343 (725)
Q Consensus       308 ~~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~  343 (725)
                      +++|.|.|+ |.+|+.++..|++.|++|++.++++..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   38 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGN   38 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCc
Confidence            368999995 999999999999999999999998443

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=92.45  E-value=0.17  Score=53.52  Aligned_cols=33  Identities=21%  Similarity=0.409  Sum_probs=30.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCh
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~  341 (725)
                      .+|.|||+|..|+.+|..|+.+|. +++++|.+.
T Consensus       119 ~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          119 AKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            479999999999999999999998 899999863

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=92.39  E-value=0.37  Score=48.86  Aligned_cols=41  Identities=24%  Similarity=0.302  Sum_probs=34.8

Q ss_pred             ceEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 004891          309 RKVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (725)
Q Consensus       309 ~kIaVI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~  349 (725)
                      .||++| |+ +-+|.++|..|++.|.+|++.|++++.+++..+
T Consensus        29 gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~   71 (273)
T 4fgs_A           29 AKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIA   71 (273)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            377777 44 679999999999999999999999998876543

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=92.36  E-value=0.17  Score=51.78  Aligned_cols=42  Identities=17%  Similarity=0.196  Sum_probs=35.6

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  350 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~  350 (725)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.
T Consensus        27 k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~   69 (302)
T 1w6u_A           27 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQ   69 (302)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            56777776 8999999999999999999999999877665443

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=92.36  E-value=0.12  Score=52.44  Aligned_cols=41  Identities=22%  Similarity=0.137  Sum_probs=34.2

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~  349 (725)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus        23 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   64 (277)
T 2rhc_B           23 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLK   64 (277)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            45666665 899999999999999999999999987766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	725
d1mj3a_	260	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat	2e-40
d1wdka4	310	c.14.1.3 (A:1-310) Fatty oxidation complex alpha s	2e-36
d1wdka3	186	c.2.1.6 (A:311-496) Fatty oxidation complex alpha	2e-33
d1f0ya2	192	c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA	9e-30
d1wdka2	95	a.100.1.3 (A:621-715) Fatty oxidation complex alph	4e-21
d1wdka1	124	a.100.1.3 (A:497-620) Fatty oxidation complex alph	7e-21
d1uiya_	253	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {The	4e-20
d1dcia_	275	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	8e-17
d1hzda_	266	c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [T	2e-15
d1q52a_	297	c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacter	2e-14
d1nzya_	269	c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Ps	6e-13
d2f6qa1	245	c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-C	2e-12
d1pjha_	266	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	7e-12
d1f0ya1	99	a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl	8e-12
d1f0ya1	99	a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl	0.001
d1ef8a_	261	c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Esc	4e-10
d2b0ja2	242	c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt	2e-09
d1wz8a1	263	c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TT	2e-08
d1sg4a1	249	c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-d	7e-08
d2fw2a1	258	c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Hum	2e-06
d1szoa_	249	c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus	6e-06
d2a7ka1	230	c.14.1.3 (A:1-230) Carbapenem biosynthes protein C	2e-05

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 260

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  147 bits (371), Expect = 2e-40
 Identities = 69/173 (39%), Positives = 86/173 (49%), Gaps = 5/173 (2%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           N  V +I L  P   NAL   ++  L    E       V AIVLTG    F+ G DI   
Sbjct: 14  NSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEM 73

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
           Q        S           + I   KKP++AAV G ALGGG ELAM C    A  K Q
Sbjct: 74  QNRTFQDCYSGK----FLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQ 129

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
            G PE+ LG IPG GGTQRL R VG S A+EM+L    I++++  + GL+  +
Sbjct: 130 FGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKI 182

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 310

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score =  137 bits (345), Expect = 2e-36
 Identities = 75/301 (24%), Positives = 129/301 (42%), Gaps = 6/301 (1%)

Query: 6   VTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           +T+     G+  +        VN      +  L+   +   +   VK ++++     F  
Sbjct: 8   ITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIV 67

Query: 64  GFDINVFQKVHGAGDVSLMPDVSVEL-VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHA 122
           G DI  F +     D  L+        + +  ED   P VAA+ G+ALGGGLE+ +    
Sbjct: 68  GADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADF 127

Query: 123 RIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDA 182
           R+ A   ++GLPE+ LG+ PGFGGT RLPRL+G+  A+E +   K   +E+  K+  +DA
Sbjct: 128 RVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDA 187

Query: 183 VVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA---KKTAP 239
           VVT+++L   +        +    +        +   L+   +++     +     +  P
Sbjct: 188 VVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKGFVAGQAGP 247

Query: 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVT 299
           N P     +  I++    G    +  EA  F +L     S  L+ +F   +   K   V 
Sbjct: 248 NYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKKKAKVY 307

Query: 300 D 300
           D
Sbjct: 308 D 308

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} Length = 186

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

 Score =  124 bits (312), Expect = 2e-33
 Identities = 60/184 (32%), Positives = 109/184 (59%)

Query: 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT 365
           + V++ AV+G G+MG GIA         +++K++N   + +G+      + G V +G++T
Sbjct: 2   KDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMT 61

Query: 366 QDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425
             K    L  ++  L Y +F +VD+V+EAV+E+  +KQ + +E+E       ILA+NTST
Sbjct: 62  PAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST 121

Query: 426 IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVV 485
           I ++++ +     +  +G HFF+P H+MPL+E++R E++S   +   +   K + K P+V
Sbjct: 122 ISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIV 181

Query: 486 VGNC 489
           V +C
Sbjct: 182 VNDC 185

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (286), Expect = 9e-30
 Identities = 60/188 (31%), Positives = 96/188 (51%), Gaps = 6/188 (3%)

Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL--- 364
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 4   VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 63

Query: 365 --TQDKANNALKMLKGVLDYSE-FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
               +     L  +    D +      D+V+EA++E++ +K ++F  L+K    H I A+
Sbjct: 64  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 123

Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKK 481
           NTS++ +  +   T+ QDR  G HFF+P  VM L+E+++T  TS +    L+   K + K
Sbjct: 124 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 183

Query: 482 VPVVVGNC 489
            PV   + 
Sbjct: 184 HPVSCKDT 191

>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 95

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 86.4 bits (214), Expect = 4e-21
 Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 619 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGAN 678
           VT+++I+  ++ P+  E+ R LE+GIV  A++ D   V G+ FP +RGG + + D++G  
Sbjct: 2   VTDEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVA 61

Query: 679 YVYTSLKKWSQLYGNFFKPSRFLEERATKG 708
                  ++++  G  + P+  L E A  G
Sbjct: 62  EFVALADQYAE-LGALYHPTAKLREMAKNG 90

>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 124

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 86.4 bits (213), Expect = 7e-21
 Identities = 50/124 (40%), Positives = 60/124 (48%), Gaps = 10/124 (8%)

Query: 491 GFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEF 550
           GF VNR  FPY      LVS GVD  RID  +  FG P+GP  L+D+ G           
Sbjct: 1   GFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVM 60

Query: 551 DKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTYEKGSKPKP----DPSVL----PII 600
            + FPDR        +D L ++ R G+ NGKG Y YE   K K     D SVL    PI+
Sbjct: 61  AEGFPDRMKDDRRSAIDALYEAKRLGQKNGKGFYAYEADKKGKQKKLVDSSVLEVLKPIV 120

Query: 601 EECR 604
            E R
Sbjct: 121 YEQR 124

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} Length = 253

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

 Score = 88.2 bits (217), Expect = 4e-20
 Identities = 56/229 (24%), Positives = 99/229 (43%), Gaps = 5/229 (2%)

Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           V +E G+  VA++ L +P   N L+  +   L    ++  +   V+A+VLTG G  FS G
Sbjct: 2   VQVEKGH--VAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAG 59

Query: 65  FDINVFQKVHGAGDVSLMPDVSVEL-VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
            D+   ++V   G           + + + +    KP VAAV G A+ GG  LA+ C   
Sbjct: 60  ADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLV 119

Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           +   + +LG  E           +  L R VG   A +++L  + + + E   LGL++ +
Sbjct: 120 VMDEEARLGYTE-VKIGFVAALVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRI 178

Query: 184 VTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARL 232
               + L+ ++  A ++A      +R               +  +LA L
Sbjct: 179 APPGKALEEAKALAEEVAKNAPTSLRLTKELLLALPGMGLEDGFRLAAL 227

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 275

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 79.0 bits (193), Expect = 8e-17
 Identities = 46/242 (19%), Positives = 96/242 (39%), Gaps = 15/242 (6%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
              V  + L  P   NA+       L + F++ +   D +A+V++G G  F+ G D+   
Sbjct: 11  QKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDM 70

Query: 71  ---------QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
                      V              +    +IE C KP++AA+ G  +GGG++L   C 
Sbjct: 71  ASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACD 130

Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE-MMLLSKSITSEEGWKLGLI 180
            R         + E+ +G+    G  QRLP+++G    +  +   ++ + ++E    GL+
Sbjct: 131 IRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLV 190

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPW----IRSLHRTDKLGSLSEAREVLKLARLQAKK 236
             V   ++++  +        + + P      +      +  S+ E+ + +    +   +
Sbjct: 191 SRVFPDKDVMLNAAFALAADISSKSPVAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQ 250

Query: 237 TA 238
           T 
Sbjct: 251 TQ 252

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.8 bits (182), Expect = 2e-15
 Identities = 63/211 (29%), Positives = 103/211 (48%), Gaps = 2/211 (0%)

Query: 8   MEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFD 66
           +E  N G+ ++ +      N+L+  ++  L    +   S   V+ I++            
Sbjct: 9   LEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGA 68

Query: 67  INVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA 126
               +    + +V       +  V+N I +   P +AA++GLALGGGLELA+ C  R+AA
Sbjct: 69  DLKERAKMSSSEVGPFVSK-IRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAA 127

Query: 127 PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186
              ++GL E  L +IPG GGTQRLPR +G+S A E++  ++ +  +E   +GLI  V+  
Sbjct: 128 SSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQ 187

Query: 187 EELLKVSRLWALDIAARRKPWIRSLHRTDKL 217
            +    +   ALD+A    P      R  KL
Sbjct: 188 NQEGDAAYRKALDLAREFLPQGPVAMRVAKL 218

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 297

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 72.5 bits (176), Expect = 2e-14
 Identities = 43/183 (23%), Positives = 64/183 (34%), Gaps = 18/183 (9%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           +D    +    P V NA     V  L    + A    DV  ++LTGNG     G      
Sbjct: 27  DDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCS 86

Query: 71  QKVHGAGDVSLMPDVSVEL----------------VVNLIEDCKKPIVAAVEGLALGGGL 114
                    S     S +                 V  LI    K ++  V G A GGG 
Sbjct: 87  GGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGH 146

Query: 115 ELAMGCHARIAA-PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEE 173
            L + C   +A+    +    +  +G   G  G+  L R VG   A E+  L ++ T+E+
Sbjct: 147 SLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQ 206

Query: 174 GWK 176
             +
Sbjct: 207 MHQ 209

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} Length = 269

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

 Score = 67.5 bits (163), Expect = 6e-13
 Identities = 58/230 (25%), Positives = 102/230 (44%), Gaps = 5/230 (2%)

Query: 6   VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           +   V  DGVA IT+  P   NAL++  +  + D    A   D V A+++TG    F  G
Sbjct: 5   IGHRV-EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAG 63

Query: 65  FDINVFQKVHGAGDVSLMPDVSVEL---VVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
           F +       G   V     ++      +++ I   K+P++AA+ G+A GGGL +++   
Sbjct: 64  FYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASD 123

Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
             I A   +      T+G+      +  L R+VG+ +A+E+ML ++++  EE    GL+ 
Sbjct: 124 MAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVS 183

Query: 182 AVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLAR 231
            V   +E  +V+   A ++AA               G +    E  +   
Sbjct: 184 RVYPKDEFREVAWKVARELAAAPTHLQVMAKERFHAGWMQPVEECTEFEI 233

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} Length = 245

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.9 bits (159), Expect = 2e-12
 Identities = 52/195 (26%), Positives = 79/195 (40%), Gaps = 4/195 (2%)

Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
            DG+  I    P   NA+   +   +    + A S+DD    VLTGNG  +S G D+  F
Sbjct: 10  EDGITKIMFNRPKKKNAINTEMYHEIMRALKAA-SKDDSIITVLTGNGDYYSSGNDLTNF 68

Query: 71  QKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
             +   G      + +V L   V    D  KP++A V G A+G  + L     A  A+ +
Sbjct: 69  TDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDR 128

Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
                P   LG  P    +   P+++  +KA EM++  K +T+ E    GL+  V     
Sbjct: 129 ATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDST 188

Query: 189 LLKVSRLWALDIAAR 203
             K         A  
Sbjct: 189 FQKEVWTRLKAFAKL 203

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.3 bits (155), Expect = 7e-12
 Identities = 43/243 (17%), Positives = 75/243 (30%), Gaps = 22/243 (9%)

Query: 5   RVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           +++  +      II LINP   NAL       L +  E A    DV   ++  +G  FS 
Sbjct: 6   KISYRI-EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSS 64

Query: 64  GFDINVFQKVHGAGDVSLMPDVSVEL---------VVNLIEDCKKPIVAAVEGLALGGGL 114
           G D     K  G        + S  +         V +      K ++  + G A+G   
Sbjct: 65  GADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSA 124

Query: 115 ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLS-KSITSEE 173
            L   C    +       L       +   GGT     L   +      L+  K    + 
Sbjct: 125 ALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDI 184

Query: 174 GWKLGLIDAVVTSEELL--KVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLAR 231
             + G I              +     ++  +    ++ L+      S    +++LK   
Sbjct: 185 MCENGFISKNFNMPSSNAEAFNAKVLEELREK----VKGLYLP----SCLGMKKLLKSNH 236

Query: 232 LQA 234
           + A
Sbjct: 237 IDA 239

>d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (144), Expect = 8e-12
 Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 4/99 (4%)

Query: 491 GFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFG--LPIGPFQLLDLAGYGVAAATSK 548
           GF VNR   PY   A  L   G             G   P+GPF+LLD  G         
Sbjct: 1   GFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVD 60

Query: 549 EFDKAFPD--RSFQSPLVDLLLKSGRNGKANGKGLYTYE 585
            + +   +      SP ++ L+   + GK  G+G Y Y+
Sbjct: 61  GWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 99

>d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 624 IVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTS 683
           IV  +L P + E+ R+ E G      D+D A  LG  +P    G     D VG +     
Sbjct: 3   IVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPM---GPFELLDYVGLDTTKFI 58

Query: 684 LKKWSQLYGN--FFKPSRFLEERATKG 708
           +  W ++       +PS  L +   + 
Sbjct: 59  VDGWHEMDAENPLHQPSPSLNKLVAEN 85

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} Length = 261

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

 Score = 58.7 bits (140), Expect = 4e-10
 Identities = 51/235 (21%), Positives = 93/235 (39%), Gaps = 4/235 (1%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           M+   V +    + VA+I        NAL+   +  L     +  +R +++ I+L    G
Sbjct: 1   MSYQYVNVVT-INKVAVIEFNYGRKLNALSKVFIDDLMQALSDL-NRPEIRCIILRAPSG 58

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
                   ++ +   G  D     D   ++    I+   KPI++ VEG   GG  E+ M 
Sbjct: 59  SKVFSAGHDIHELPSGGRDPLSYDDPLRQITRM-IQKFPKPIISMVEGSVWGGAFEMIMS 117

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
               IAA  +   +  + LGV     G   L R  G     E++  +  IT++    +G+
Sbjct: 118 SDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGI 177

Query: 180 IDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA 234
           ++ VV  EEL   +   A  I+ +    I  +    ++   +      +  R+Q 
Sbjct: 178 LNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEELRVLGEAHTMNSDEFERIQG 232

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

 Score = 56.5 bits (136), Expect = 2e-09
 Identities = 31/226 (13%), Positives = 66/226 (29%), Gaps = 31/226 (13%)

Query: 286 FFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHIL--------NNIYVVLK 337
           F      +K     +I L           G  L+        ++            VV+ 
Sbjct: 22  FMRACEVAKEVGKPEIAL----THSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVID 77

Query: 338 EVNSEYLLKGIKT-----IEANVRGLV-TRGKLTQDKANNALKMLKG-------VLDYSE 384
           E + + +++   +     I   +R +V  + K         + ++           D  E
Sbjct: 78  EFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIHLVHPEDVGLKVTSDDRE 137

Query: 385 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQD-R 440
             +  D+VI  + +    +  I  +   A P   I+    +        + +    +D  
Sbjct: 138 AVEGADIVITWLPKG-NKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLN 196

Query: 441 IIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV 486
           I   H      +   + I     +   V   L  +GKI +     +
Sbjct: 197 ITSYHPGCVPEMKGQVYIAEGYASEEAVNK-LYEIGKIARGKAFKM 241

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} Length = 263

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

 Score = 53.7 bits (127), Expect = 2e-08
 Identities = 32/118 (27%), Positives = 56/118 (47%)

Query: 4   PRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           P +       GV  IT     +NA+   +  GL   + +  + + V+A++L G GG FS 
Sbjct: 9   PGLAFAWPRPGVLEITFRGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSA 68

Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
           G    + +++  + +  L        +V    +  +P+VAAVE +A+G GL LA+   
Sbjct: 69  GGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAAD 126

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 249

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score = 51.8 bits (122), Expect = 7e-08
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 5  RVTMEV-GNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
          RV +E     GVA++   NPPVN+L++  +  L    E+  +    + ++LT +    
Sbjct: 3  RVLVEPDAGAGVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGV 60

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 2e-06
 Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 5/155 (3%)

Query: 13  DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFD--IN 68
           DG   I L       NAL   ++  + +    A + DD K ++ +  G  F  G D    
Sbjct: 10  DGFTQIVLSTRSTEKNALNTEVIKEMVNALNSA-AADDSKLVLFSAAGSVFCCGLDFGYF 68

Query: 69  VFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
           V    +     SL    +++  VN     KKPIV +V G A+G G  +   C    A  K
Sbjct: 69  VRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEK 128

Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM 163
                P  T G  P    +   P+++G + A EM+
Sbjct: 129 AWFQTPYTTFGQSPDGCSSITFPKMMGKASANEML 163

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} Length = 249

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

 Score = 45.9 bits (107), Expect = 6e-06
 Identities = 39/213 (18%), Positives = 75/213 (35%), Gaps = 13/213 (6%)

Query: 1   MAAP---------RVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVK 50
           +A P          + +E  + GV ++T+                L   F +     + K
Sbjct: 1   LATPFQEYSQKYENIRLER-DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENK 59

Query: 51  AIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL 110
             V+   G   S   +I+      G            + ++N +   + P++AAV G   
Sbjct: 60  --VVILTGTGPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVT 117

Query: 111 GGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSIT 170
                  M      A   T    P    G++PG G     P ++G ++    +L  + + 
Sbjct: 118 NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELD 177

Query: 171 SEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR 203
           +      G ++ V++ +ELL  +   A  IA +
Sbjct: 178 ARTALDYGAVNEVLSEQELLPRAWELARGIAEK 210

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} Length = 230

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

 Score = 44.4 bits (103), Expect = 2e-05
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 6  VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVK 50
          +  E  +D V +ITL +P   N  +  +   +KD    A + D V+
Sbjct: 1  MVFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVR 46

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	725
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	100.0
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	100.0
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	100.0
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	100.0
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	100.0
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	100.0
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	100.0
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	100.0
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	100.0
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	100.0
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	100.0
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	100.0
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	100.0
d1wdka2	95	Fatty oxidation complex alpha subunit, C-terminal	99.93
d1wdka1	124	Fatty oxidation complex alpha subunit, C-terminal	99.92
d1f0ya1	99	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.91
d1f0ya1	99	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.79
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.75
d1wdka2	95	Fatty oxidation complex alpha subunit, C-terminal	99.71
d1wdka1	124	Fatty oxidation complex alpha subunit, C-terminal	99.69
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.68
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.6
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	99.58
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	99.57
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	99.55
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.5
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	99.49
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.25
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	99.19
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.17
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	99.14
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	99.12
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	99.09
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	99.0
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.99
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	98.85
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	98.67
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	98.64
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	98.64
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	98.63
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	98.61
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.56
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	98.52
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	98.5
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	98.48
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	98.47
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	98.44
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	98.35
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	98.31
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	98.3
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	98.3
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	98.25
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	98.11
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	98.09
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	97.97
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.94
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	97.88
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	97.87
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.82
d2cbya1	179	Clp protease, ClpP subunit {Mycobacterium tubercul	97.76
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	97.75
d1y7oa1	192	Clp protease, ClpP subunit {Streptococcus pneumoni	97.66
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	97.66
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.65
d1yg6a1	183	Clp protease, ClpP subunit {Escherichia coli [TaxI	97.65
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	97.65
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	97.64
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.63
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	97.58
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.57
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	97.52
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	97.45
d2f6ia1	190	Clp protease, ClpP subunit {Plasmodium falciparum	97.45
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.44
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	97.37
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	97.35
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	97.31
d1tg6a1	193	Clp protease, ClpP subunit {Human (Homo sapiens),	97.27
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	97.25
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	97.2
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.12
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	97.1
d1on3a1	253	Methylmalonyl-CoA carboxyltransferase (transcarbox	97.05
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	97.04
d2f9yb1	263	Acetyl-coenzyme A carboxylase carboxyl transferase	96.98
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	96.98
d1pixa2	287	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	96.96
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.92
d1vrga1	251	Propionyl-CoA carboxylase complex B subunit, PccB	96.91
d2f9ya1	316	Acetyl-coenzyme A carboxylase carboxyl transferase	96.9
d2a7sa1	258	Propionyl-CoA carboxylase complex B subunit, PccB	96.81
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.81
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	96.71
d1xnya1	258	Propionyl-CoA carboxylase complex B subunit, PccB	96.68
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.67
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	96.57
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.54
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.48
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	96.41
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.28
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.15
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.15
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	96.11
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.08
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	96.07
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.04
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	96.02
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	96.0
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	95.96
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	95.95
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	95.91
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	95.87
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	95.87
d1vrga2	264	Propionyl-CoA carboxylase complex B subunit, PccB	95.71
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	95.71
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	95.66
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	95.65
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	95.56
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	95.55
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	95.51
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	95.38
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	95.34
d2a7sa2	271	Propionyl-CoA carboxylase complex B subunit, PccB	95.34
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	95.31
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.29
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.26
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	95.14
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	95.07
d1xnya2	263	Propionyl-CoA carboxylase complex B subunit, PccB	95.06
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	95.01
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.0
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.99
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	94.97
d1on3a2	264	Methylmalonyl-CoA carboxyltransferase (transcarbox	94.89
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	94.89
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.82
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	94.81
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	94.76
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	94.67
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	94.65
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	94.61
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.6
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	94.51
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	94.47
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	94.43
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	94.4
d1uyra1	333	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	94.38
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	94.36
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	94.32
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	94.32
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.29
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.29
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	94.26
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	94.12
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	94.11
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.04
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	93.97
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	93.92
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	93.9
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	93.87
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	93.87
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	93.86
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	93.86
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	93.86
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	93.85
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	93.84
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	93.82
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	93.79
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	93.77
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	93.64
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	93.64
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	93.63
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	93.61
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	93.59
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	93.57
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	93.57
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	93.56
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.54
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	93.51
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	93.44
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.39
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	93.34
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	93.33
d1pixa3	299	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	93.3
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	93.18
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	93.16
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	93.07
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	93.06
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	93.01
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	92.9
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	92.9
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	92.89
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	92.84
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	92.83
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	92.73
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	92.7
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	92.63
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	92.6
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	92.48
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	92.39
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	92.35
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	92.28
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	92.16
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	92.12
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	92.09
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	92.07
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	92.06
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	92.0
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	91.82
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	91.76
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	91.68
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	91.67
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	91.59
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	91.49
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	91.48
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	91.43
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	91.4
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	91.35
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	91.22
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	91.0
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	90.99
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	90.97
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	90.89
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	90.85
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.81
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	90.69
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	90.66
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	90.46
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	90.43
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	90.37
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	90.29
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	89.82
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	89.77
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	89.7
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	89.67
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	89.61
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	89.58
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	89.55
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	89.53
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	89.41
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	89.38
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	89.2
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	88.73
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	88.7
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	88.68
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	88.54
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	88.46
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	88.18
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	88.03
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	87.9
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	87.87
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	87.28
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	87.13
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	87.1
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	87.05
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	87.05
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	87.02
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	87.02
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	86.78
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	86.78
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	86.58
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	86.57
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	86.48
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	86.36
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	86.24
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	86.11
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	85.94
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	85.75
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	85.57
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	85.53
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	85.47
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	85.23
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	84.94
d1uyra2	404	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	84.65
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	84.58
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	84.57
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	84.24
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	84.03
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	83.94
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	83.74
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	83.61
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	83.61
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	83.47
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	83.47
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	83.38
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	83.2
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	83.19
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	83.11
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	82.89
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	82.61
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	82.49
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	82.49
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	82.05
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	81.91
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	81.87
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	81.83
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	81.56
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	81.22
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	80.74
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	80.65
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	80.43
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	80.4
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	80.22
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	80.12

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=2.1e-52  Score=439.54  Aligned_cols=297  Identities=26%  Similarity=0.370  Sum_probs=253.1

Q ss_pred             CCC--CcEEEEEecCcEEEEEeC-CCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCC
Q 004891            1 MAA--PRVTMEVGNDGVAIITLI-NPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA   76 (725)
Q Consensus         1 M~~--~~i~~~~~~~~v~~i~l~-~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~   76 (725)
                      |.|  +.++++..++||++|+|| +|+ .|+||.+|+++|.++++.++.|+++++|||||.|++||+|+|++++......
T Consensus         1 M~~~~~~i~~~~~~~gva~i~ln~~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~   80 (310)
T d1wdka4           1 MIYEGKAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKL   80 (310)
T ss_dssp             CCEECSSEEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSSBBCCCHHHHHHHTTS
T ss_pred             CCcCCceEEEEEecCCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccchhhhhhhhhcccc
Confidence            564  589998867899999998 674 7999999999999999999999999999999999999999999998764433


Q ss_pred             Ccc--cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhh
Q 004891           77 GDV--SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV  154 (725)
Q Consensus        77 ~~~--~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~v  154 (725)
                      .+.  .......++++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++
T Consensus        81 ~~~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~elal~cD~ria~~~a~f~~pe~~~Gl~P~~gg~~~L~r~i  159 (310)
T d1wdka4          81 PDAELIAGNLEANKIF-SDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLI  159 (310)
T ss_dssp             CHHHHHHHHHHHHHHH-HHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHH
T ss_pred             cchhhhhhhhHHHHHH-HHhhcCCccceeeccccccccccccchhhhhhhccccceecccccccCCCccccchhhhhhhh
Confidence            221  11122344566 679999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCC--ChHHHHHHHHHHHH
Q 004891          155 GLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLG--SLSEAREVLKLARL  232 (725)
Q Consensus       155 G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  232 (725)
                      |..++++|+++|++++|+||+++||||+|||++++.+.+.++|+++++.+..............  +.......+...+.
T Consensus       160 G~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (310)
T d1wdka4         160 GVDNAVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKG  239 (310)
T ss_dssp             CHHHHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSCHHHHHGGGGSCCSCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhccccccCHHHHhhccCccEEccHHHHHHHHHHHHHHHHhcccchhhhhhhhcccccccchhhhHHHHHhhh
Confidence            9999999999999999999999999999999999999999999999988765433322211111  22222223333333


Q ss_pred             -HHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCCCCC
Q 004891          233 -QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNV  298 (725)
Q Consensus       233 -~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~~~  298 (725)
                       ..+++.++|||+.+++++++.+...+++++|+.|++.|.+++.|++++++|++|++||+.+|.++.
T Consensus       240 ~~~~~~~~~~pA~~~~l~~v~~~~~~~~~~~L~~E~~~f~~l~~t~~a~~~i~aF~~kr~~~k~a~~  306 (310)
T d1wdka4         240 FVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKKKAKV  306 (310)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCCCC
Confidence             345889999999999999999999999999999999999999999999999999999999986643

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.7e-50  Score=413.10  Aligned_cols=254  Identities=33%  Similarity=0.429  Sum_probs=228.8

Q ss_pred             CCCcEEEEEe--cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc
Q 004891            2 AAPRVTMEVG--NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (725)
Q Consensus         2 ~~~~i~~~~~--~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~   78 (725)
                      +|++|.+++.  +++|++||||||+ .|+||.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++....... 
T Consensus         2 ~~~~i~~e~~g~~~~I~~itlnrP~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~-   80 (260)
T d1mj3a_           2 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQD-   80 (260)
T ss_dssp             CCSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCCHHH-
T ss_pred             CCeEEEEEEEcCCCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCcceEEEecccccccccchhhhhhccchhh-
Confidence            5889999984  3689999999995 79999999999999999999999999999999999999999999986532211 


Q ss_pred             ccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHH
Q 004891           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (725)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~  158 (725)
                        .+......++ ..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|.++
T Consensus        81 --~~~~~~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~ig~~~  157 (260)
T d1mj3a_          81 --CYSGKFLSHW-DHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSL  157 (260)
T ss_dssp             --HHHC--CCGG-GGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHHH
T ss_pred             --hhHHHHHHHH-HHhccCCCeEEEEEcCeEeHHHHHHHHHCCEEEEcCCCEEECchhccCcCCcccHHHHHHHHhCHHH
Confidence              1111222344 5688999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 004891          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (725)
Q Consensus       159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (725)
                      |++|+++|++++|+||+++|||++|++.+++.+.+.+++.+++..++.++                              
T Consensus       158 a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~a~~~a~~i~~~~~~a~------------------------------  207 (260)
T d1mj3a_         158 AMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIV------------------------------  207 (260)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHHHSCHHHH------------------------------
T ss_pred             HHHHHHcCcccCchhhccCCCceeeecccccccccccccccccchhhHHH------------------------------
Confidence            99999999999999999999999999999999999999999999887533                              


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCC
Q 004891          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (725)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  295 (725)
                            ..+|+.++.....+++++++.|.+.+..++.|+|+++++++|++||+|+..
T Consensus       208 ------~~~K~~l~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egi~aFleKR~P~f~  258 (260)
T d1mj3a_         208 ------AMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANFK  258 (260)
T ss_dssp             ------HHHHHHHHGGGSSCHHHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCCC
T ss_pred             ------HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCC
Confidence                  356888999999999999999999999999999999999999999998853

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-49  Score=406.75  Aligned_cols=252  Identities=20%  Similarity=0.296  Sum_probs=226.4

Q ss_pred             CCcEEEEEecCcEEEEEeC-CC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc--
Q 004891            3 APRVTMEVGNDGVAIITLI-NP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD--   78 (725)
Q Consensus         3 ~~~i~~~~~~~~v~~i~l~-~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~--   78 (725)
                      |++|.+++ +++|++||+| || +.|++|.+|+.+|.++++.++.| ++++|||||.|++||+|+|++++........  
T Consensus         1 y~~i~v~~-~~gi~~i~l~~rp~~~Nals~~~~~el~~al~~~~~d-~~~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~   78 (258)
T d2fw2a1           1 YRDIVVKK-EDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAAD-DSKLVLFSAAGSVFCCGLDFGYFVRHLRNDRNT   78 (258)
T ss_dssp             CCSEEEEE-ETTEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHS-SCSEEEEEECSSCSBCCBCHHHHHHHHHHCHHH
T ss_pred             CceEEEEE-ECCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCccccccccccchhhhcccccccc
Confidence            67899999 8999999997 57 47999999999999999999987 5799999999999999999999865322111  


Q ss_pred             -ccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHH
Q 004891           79 -VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (725)
Q Consensus        79 -~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~  157 (725)
                       ...+.....+++ ..+.++||||||+|||+|+|||++++++||+||++++++|++||+++|++|++|++++|+|++|..
T Consensus        79 ~~~~~~~~~~~~~-~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~ig~~  157 (258)
T d2fw2a1          79 ASLEMVDTIKNFV-NTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKA  157 (258)
T ss_dssp             HHHHHHHHHHHHH-HHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHH
T ss_pred             hhhHHHHHHHHHH-HhhhccceeeeeecccccccccccccccccccceecccceeeccccccccccccccccchhhcCcc
Confidence             123334455666 679999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 004891          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (725)
Q Consensus       158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (725)
                      ++++|+++|++++|+||+++||||+|||++++.+++.++++++++.|+.+++                            
T Consensus       158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a~~----------------------------  209 (258)
T d2fw2a1         158 SANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNAIVLE----------------------------  209 (258)
T ss_dssp             HHHHHHTTCCEEEHHHHHHTTSCSEEECSTTHHHHHHHHHHHHTTSCHHHHH----------------------------
T ss_pred             ccchhhccCcccccccccccccccccccccccccccchhhhhhhhhhHHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999998875433                            


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhc
Q 004891          238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS  293 (725)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~  293 (725)
                              .+|+.++.....+++++++.|.+.+..++.|+|++|++++|++||+|+
T Consensus       210 --------~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~Egi~af~EKR~p~  257 (258)
T d2fw2a1         210 --------ECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVENKIDE  257 (258)
T ss_dssp             --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHSSCCC
T ss_pred             --------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCC
Confidence                    457778888888899999999999999999999999999999999876

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=100.00  E-value=3.4e-49  Score=407.94  Aligned_cols=257  Identities=23%  Similarity=0.311  Sum_probs=231.3

Q ss_pred             CCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc---
Q 004891            3 APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD---   78 (725)
Q Consensus         3 ~~~i~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~---   78 (725)
                      |++|.+++ +|||++|||||| +.|+||.+|+.+|.++++.+++|+++++|||||.|++||+|+|++++........   
T Consensus         2 y~~i~~~i-~dgVa~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~i~~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~   80 (269)
T d1nzya_           2 YEAIGHRV-EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRD   80 (269)
T ss_dssp             CSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHH
T ss_pred             CCceEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCcccccchhhHHHHhhcccccchhh
Confidence            57899999 799999999999 6899999999999999999999999999999999999999999999854221111   


Q ss_pred             -ccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHH
Q 004891           79 -VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (725)
Q Consensus        79 -~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~  157 (725)
                       ........+.++ ..|.++||||||+|||+|+|||++|+++|||||++++++|++||.++|+.|++|+++++++++|..
T Consensus        81 ~~~~~~~~~~~~~-~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~~~~~g~~~~~g~~~~l~~~ig~~  159 (269)
T d1nzya_          81 HFRIAALWWHQMI-HKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMR  159 (269)
T ss_dssp             HHHHHHHHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HHHHhhcchhehhhhhhcCCCceeeeecccHhhhhhhhhhcccccccccccccccccccccccChh
Confidence             111122234455 669999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 004891          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (725)
Q Consensus       158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (725)
                      +|++++++|+.++|+||+++||||+|||++++.+++.++|+++++.|+.+++                            
T Consensus       160 ~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------  211 (269)
T d1nzya_         160 RAMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVARELAAAPTHLQV----------------------------  211 (269)
T ss_dssp             HHHHHHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHHHHHHHHHHSCHHHHH----------------------------
T ss_pred             hhhhccccccccchhHHHHcCCccccccccccccchhhhhhhhhhhhHHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999998875332                            


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCCCC
Q 004891          238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPN  297 (725)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~~  297 (725)
                              .+|+.++.....+++++++.|.+.+..++.++++++++++|++||+|++.+.
T Consensus       212 --------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~e~v~aflekrkp~~~~~  263 (269)
T d1nzya_         212 --------MAKERFHAGWMQPVEECTEFEIQNVIASVTHPHFMPCLTRFLDGHRADRPQV  263 (269)
T ss_dssp             --------HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHSTTHHHHHHHHHTTCCTTCCSS
T ss_pred             --------HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHCCCCCCcCCC
Confidence                    5678888888999999999999999999999999999999999999987553

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.7e-49  Score=402.53  Aligned_cols=254  Identities=21%  Similarity=0.283  Sum_probs=221.8

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC--CCCCcCCCCchhhhhccCCC
Q 004891            1 MAAPRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--GGRFSGGFDINVFQKVHGAG   77 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~--g~~F~aG~Dl~~~~~~~~~~   77 (725)
                      |+|++|.+++ +++|++|||||| +.|+||.+|+++|.+++++++ ++++++|||+|.  |++||+|+||+++...... 
T Consensus         1 M~~~~i~~~~-~~~v~~Itlnrp~~~Nal~~~~~~~l~~al~~~~-~~~~~~vVl~g~~g~~~F~aG~Dl~~~~~~~~~-   77 (261)
T d1ef8a_           1 MSYQYVNVVT-INKVAVIEFNYGRKLNALSKVFIDDLMQALSDLN-RPEIRCIILRAPSGSKVFSAGHDIHELPSGGRD-   77 (261)
T ss_dssp             CCCSSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTC-STTCCEEEEECCTTCSEEECCSCSTTC-----C-
T ss_pred             CCCCEEEEEE-ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEeccccchhhcccccccccccCCcc-
Confidence            9999999999 899999999999 579999999999999999997 468999999986  5789999999998764322 


Q ss_pred             cccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHH
Q 004891           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (725)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~  157 (725)
                       ...+......++ +.|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++++|++|..
T Consensus        78 -~~~~~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~~~~pe~~~Gl~~~~~~~~~l~r~~g~~  155 (261)
T d1ef8a_          78 -PLSYDDPLRQIT-RMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFH  155 (261)
T ss_dssp             -TTCTTSHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHH
T ss_pred             -ccccccchhhhH-HHHHhCchhhhhcccccccchhhhhhhhhhhhhhhHhHHHhhhhcccccccccccccccccccCcc
Confidence             223344566677 779999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 004891          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (725)
Q Consensus       158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (725)
                      ++++++++|+.++|+||+++||||+|+|++++.+++.++++++++.+|.+++                            
T Consensus       156 ~a~~~~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~~~a~~----------------------------  207 (261)
T d1ef8a_         156 IVKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIA----------------------------  207 (261)
T ss_dssp             HHHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHTTSCHHHHH----------------------------
T ss_pred             ccccccccCceEcHHHHHHcCCcceeeechhhhhhhHHHHHHHHhcCcHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999998875433                            


Q ss_pred             CCCChhHHHHHHHHHHhhcCCH--HHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCC
Q 004891          238 APNMPQHQACLDVIEEGIVHGG--YSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (725)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~--~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  295 (725)
                              .+|+.++.......  ...++.+...+..++.|+|++|++++|++||+|.++
T Consensus       208 --------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~D~~Egi~AfleKR~P~f~  259 (261)
T d1ef8a_         208 --------VIKEELRVLGEAHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKRKPNFV  259 (261)
T ss_dssp             --------HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred             --------HHHHHHHHHHhcCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCcCC
Confidence                    45666666555443  455666677788999999999999999999998854

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=6.6e-49  Score=404.03  Aligned_cols=253  Identities=23%  Similarity=0.249  Sum_probs=225.5

Q ss_pred             CCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCC-ccc
Q 004891            3 APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-DVS   80 (725)
Q Consensus         3 ~~~i~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~-~~~   80 (725)
                      |+.+.++.+++||++||| || +.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++....... ...
T Consensus         8 ~~~i~~~~~~~gV~~itl-rp~~~Nal~~~m~~el~~~~~~~~~d~~vr~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~   86 (263)
T d1wz8a1           8 YPGLAFAWPRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMRASHEALL   86 (263)
T ss_dssp             CTTEEEEEEETTEEEEEE-CCSGGGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHHHHHHHHHCHHHHH
T ss_pred             CCeEEEEEcCCCEEEEEE-CCCCCCCCCHHHHHHHHHHHHHHhhCCCCeEEEEecccccccccchhhhhhhhcccccccc
Confidence            788999987789999999 66 689999999999999999999999999999999999999999999986542221 122


Q ss_pred             ccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHH
Q 004891           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (725)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~  160 (725)
                      .+.....+++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..+|+
T Consensus        87 ~~~~~~~~~~-~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~~G~~~a~  165 (263)
T d1wz8a1          87 RVFWEARDLV-LGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAK  165 (263)
T ss_dssp             HHHHHHHHHH-HHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHHHH
T ss_pred             cchhhhhHHH-HHhhhhhcceeeeccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence            3334455666 679999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCC
Q 004891          161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  240 (725)
Q Consensus       161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (725)
                      +|+++|++++|+||+++||||+|||++++.+++.++|+++++.|+.+++                               
T Consensus       166 ~l~l~g~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~al~-------------------------------  214 (263)
T d1wz8a1         166 YHLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERLAQGPKEALH-------------------------------  214 (263)
T ss_dssp             HHHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH-------------------------------
T ss_pred             hhcccccccchhHHHhcCCcccccchhhhhHHHHHHHHHhhccHHHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999875443                               


Q ss_pred             ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcC
Q 004891          241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (725)
Q Consensus       241 ~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  294 (725)
                           .+|++++....... +.++.|.+.+..++.|+|++|++++|++||+|+.
T Consensus       215 -----~~K~~l~~~~~~~~-~~~~~e~~~~~~~~~s~d~~Egi~Af~eKR~P~f  262 (263)
T d1wz8a1         215 -----HTKHALNHWYRSFL-PHFELSLALEFLGFSGKELEEGLKALKEKRPPEF  262 (263)
T ss_dssp             -----HHHHHHHHHHHTTH-HHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCC
T ss_pred             -----HHHHHHHHHHhChH-HHHHHHHHHHHHHccCHHHHHHHHHHhCCCCCCC
Confidence                 45667776665544 5689999999999999999999999999998874

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.2e-47  Score=398.22  Aligned_cols=258  Identities=19%  Similarity=0.307  Sum_probs=226.0

Q ss_pred             CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccc
Q 004891            2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (725)
Q Consensus         2 ~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~   80 (725)
                      +|+++.++..+++|++||||||+ .|+||.+|+.+|.++++.+++|+++++|||||.|++||+|+|+.++..........
T Consensus         1 ~y~~l~~~~~~~~I~~itlnrP~~~Nals~~m~~el~~~l~~~~~d~~v~~vvltg~~~~F~aG~dl~~~~~~~~~~~~~   80 (275)
T d1dcia_           1 AYESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGD   80 (275)
T ss_dssp             CCSSEEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCS
T ss_pred             CCceEEEEEccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccCccHHHhhhcccccccc
Confidence            58899987657899999999994 79999999999999999999999999999999999999999999887543322111


Q ss_pred             c----------cchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchH
Q 004891           81 L----------MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRL  150 (725)
Q Consensus        81 ~----------~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l  150 (725)
                      .          .......++ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|+++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~-~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~~~~~~~  159 (275)
T d1dcia_          81 DVARIAWYLRDLISRYQKTF-TVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRL  159 (275)
T ss_dssp             SHHHHHHHHHHHHHHHHHHH-HHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHG
T ss_pred             cccchhhhhccchhhhHHHH-HHHHhcCCCEEEEEeeEeehhhHHHHhhcCchhhccCccccchhccccccccccccccc
Confidence            1          111233445 56899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhCHH-HHHHHHHcCCCCCHHHHHHcCCcceecCcch-HHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHH
Q 004891          151 PRLVGLS-KAIEMMLLSKSITSEEGWKLGLIDAVVTSEE-LLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLK  228 (725)
Q Consensus       151 ~r~vG~~-~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~-l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (725)
                      ++++|.. .+++++++|+.++|+||+++||||+|+|.++ +.+++.++++++++.+|.+++                   
T Consensus       160 ~~~~g~~~~~~~ll~~g~~~~a~eA~~~Glv~~v~~~~~~l~~~~~~~a~~i~~~~p~a~~-------------------  220 (275)
T d1dcia_         160 PKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQ-------------------  220 (275)
T ss_dssp             GGTCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHHSCHHHHH-------------------
T ss_pred             ccccccccccccccccccccchhhhccCCCceeeeehhhhhhhcccccccccccccHHHHH-------------------
Confidence            9999954 5668999999999999999999999998654 678889999999998875433                   


Q ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCCC
Q 004891          229 LARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (725)
Q Consensus       229 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  296 (725)
                                       .+|+.++.+...+++++++.|...+..++.|+|++|++++|++||+|++.+
T Consensus       221 -----------------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~Egi~AfleKR~pk~~~  271 (275)
T d1dcia_         221 -----------------GSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKKDSKSIT  271 (275)
T ss_dssp             -----------------HHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSHHHHHHHHHHHTTCCGGGCC
T ss_pred             -----------------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCCC
Confidence                             457788888889999999999999999999999999999999999998643

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.5e-47  Score=392.55  Aligned_cols=247  Identities=23%  Similarity=0.328  Sum_probs=220.5

Q ss_pred             EEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc--ccccchh
Q 004891            9 EVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD--VSLMPDV   85 (725)
Q Consensus         9 ~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~--~~~~~~~   85 (725)
                      ++++++|++||||||+ .|+||.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++........  .......
T Consensus         3 ~ie~G~va~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~v~~vvl~g~g~~f~aG~dl~~~~~~~~~~~~~~~~~~~~   82 (253)
T d1uiya_           3 QVEKGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRHSLS   82 (253)
T ss_dssp             EEECSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred             EEeeCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEecccccccccchhHHhhhccccCcccccchhhh
Confidence            4435679999999995 799999999999999999999999999999999999999999998875433221  1122233


Q ss_pred             HHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHc
Q 004891           86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL  165 (725)
Q Consensus        86 ~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~  165 (725)
                      ...++ ..|.++||||||+|||+|+|||++|+++|||||++++++|++||.++|++| +|++++|++++|..+|++|+++
T Consensus        83 ~~~~~-~~i~~~~kpvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~e~~~g~~~-~~~~~~l~~~~g~~~a~~l~l~  160 (253)
T d1uiya_          83 LMRLF-HRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVA-ALVSVILVRAVGEKAAKDLLLT  160 (253)
T ss_dssp             HHHHH-HHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCC-HHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hhhhh-hHHhcCCCCEEEEeCeEEehhhHHHHhhhhhhhhhhhhHHhhhhccccccc-ccchhhhhcccCHHHHHHHhhc
Confidence            34455 668999999999999999999999999999999999999999999999877 5678899999999999999999


Q ss_pred             CCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhHH
Q 004891          166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ  245 (725)
Q Consensus       166 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  245 (725)
                      |++++|+||+++||||+|+|.+++.+.+.++++++++.++.+.                                    .
T Consensus       161 g~~~~a~eA~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a~------------------------------------~  204 (253)
T d1uiya_         161 GRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKNAPTSL------------------------------------R  204 (253)
T ss_dssp             CCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHHHSCHHHH------------------------------------H
T ss_pred             CcCCCHHHHHHhCCCcccccccccchhHHHHHHhhcccchHHH------------------------------------H
Confidence            9999999999999999999999999999999999999887533                                    2


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhc
Q 004891          246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS  293 (725)
Q Consensus       246 ~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~  293 (725)
                      .+|+.++.....++++++..|.+.+..++.|+|++|++++|++||+|+
T Consensus       205 ~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~af~eKR~P~  252 (253)
T d1uiya_         205 LTKELLLALPGMGLEDGFRLAALANAWVRETGDLAEGIRAFFEKRPPR  252 (253)
T ss_dssp             HHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCC
Confidence            567889999999999999999999999999999999999999999876

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-47  Score=395.47  Aligned_cols=248  Identities=26%  Similarity=0.398  Sum_probs=217.0

Q ss_pred             EecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-CCcCCCCchhhhhccCCCcccccchhHH
Q 004891           10 VGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVFQKVHGAGDVSLMPDVSV   87 (725)
Q Consensus        10 ~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~-~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   87 (725)
                      .+++||++||||||+ .|++|.+|+++|.++++.++.|+++++|||||.|+ +||+|.|++++...... +...+.....
T Consensus        11 ~~~~gI~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~~g~d~~~~~~~~~~-~~~~~~~~~~   89 (266)
T d1hzda_          11 EENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSS-EVGPFVSKIR   89 (266)
T ss_dssp             GGGTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHH-HHHHHHHHHH
T ss_pred             EecCCEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhCCCcceEEEeccccccccccccccccccccch-hhhhhhhHHH
Confidence            345789999999995 79999999999999999999999999999999885 79999999988753321 2223344455


Q ss_pred             HHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCC
Q 004891           88 ELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSK  167 (725)
Q Consensus        88 ~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~  167 (725)
                      .++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+++|+
T Consensus        90 ~~~-~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~ig~~~a~~l~ltg~  168 (266)
T d1hzda_          90 AVI-NDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSAR  168 (266)
T ss_dssp             HHH-HHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHTC
T ss_pred             HHH-HHHhcCCcccccccccccccccceeccccceeeecCCcEEeecccceeecCCccceeeehhhhHHHHHHhhhccCC
Confidence            666 6799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHcCCcceecCcchHHHHHHH----HHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChh
Q 004891          168 SITSEEGWKLGLIDAVVTSEELLKVSRL----WALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ  243 (725)
Q Consensus       168 ~~~a~eA~~~Glv~~vv~~~~l~~~a~~----~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  243 (725)
                      +++|+||+++||||+|||++++.+++.+    ++++++..||.+                                    
T Consensus       169 ~~~a~eA~~~Glv~~vv~~~~l~~~~~~~a~~~a~~i~~~~p~a------------------------------------  212 (266)
T d1hzda_         169 VLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVA------------------------------------  212 (266)
T ss_dssp             EEEHHHHHHHTSCSEEECCCTTSCHHHHHHHHHHHTTTTSCHHH------------------------------------
T ss_pred             ccCHHHhhcccccccccChhhhhhHHHHHHHHHHHhcccCChHH------------------------------------
Confidence            9999999999999999998776555444    445555555532                                    


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCC
Q 004891          244 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (725)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  295 (725)
                      ...+|+.++.+...+++++++.|...+..++.|+|++|++++|++||+|+++
T Consensus       213 ~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~f~  264 (266)
T d1hzda_         213 MRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRYK  264 (266)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTTSCCCCC
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCC
Confidence            3356888999999999999999999999999999999999999999998853

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-46  Score=379.13  Aligned_cols=240  Identities=23%  Similarity=0.285  Sum_probs=212.2

Q ss_pred             CCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc---
Q 004891            3 APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD---   78 (725)
Q Consensus         3 ~~~i~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~---   78 (725)
                      |++|.+++ +++|++|||||| +.|++|.+|+.+|.+++++++.|+.+ +||++|.|++||+|+|++++........   
T Consensus         2 ~~~i~~~~-~~gi~~Itlnrp~~~Nals~~~~~~l~~~l~~~~~d~~v-~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   79 (245)
T d2f6qa1           2 FETLVVTS-EDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPGGVEEK   79 (245)
T ss_dssp             CSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCTTHHHHH
T ss_pred             cceEEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCce-EEeecCCCccccCCccchhhhcccccccccc
Confidence            67899999 789999999999 68999999999999999999999877 8999999999999999999876433221   


Q ss_pred             ccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHH
Q 004891           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (725)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~  158 (725)
                      .........+++ ++|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus        80 ~~~~~~~~~~~~-~~i~~~~kpvIa~v~G~a~GgG~~la~~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~g~~~  158 (245)
T d2f6qa1          80 AKNNAVLLREFV-GCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAK  158 (245)
T ss_dssp             HHHHHHHHHHHH-HHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHHH
T ss_pred             cchhhhHHHHHH-hhhhhcCCceEEEECCccccccccchhhhhhhhhhccCeEecccccCCCCccccchhhcccccccch
Confidence            112222334555 6799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 004891          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (725)
Q Consensus       159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (725)
                      |++|+++|+.++|+||+++||||+|+|++++.+++.++|+++++.||.+++                             
T Consensus       159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-----------------------------  209 (245)
T d2f6qa1         159 ATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALR-----------------------------  209 (245)
T ss_dssp             HHHHHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHH-----------------------------
T ss_pred             hhhhcccccccccccccccccccccCCcchHHHHHHHHHHHHHcCCHHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999998875433                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHH
Q 004891          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRG  281 (725)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~  281 (725)
                             .+|++++.....++++.++.|.+.+..++.|+|+++
T Consensus       210 -------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~n  245 (245)
T d2f6qa1         210 -------ISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTN  245 (245)
T ss_dssp             -------HHHHHHHGGGHHHHHHHHHHHHHHHHHHHTSHHHHC
T ss_pred             -------HHHHHHHhhhhcCHHHHHHHHHHHHHHHhcCcccCC
Confidence                   467888888888899999999999999999999975

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=2e-45  Score=385.19  Aligned_cols=257  Identities=24%  Similarity=0.267  Sum_probs=209.2

Q ss_pred             CCCcEEEEEe-cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-------CCCcCCCCchhhhh
Q 004891            2 AAPRVTMEVG-NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-------GRFSGGFDINVFQK   72 (725)
Q Consensus         2 ~~~~i~~~~~-~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-------~~F~aG~Dl~~~~~   72 (725)
                      +...|.++.+ ++||++||||||+ .|+||.+|+.+|.++++++++|+++|+|||||.|       ..||+|.|++....
T Consensus        16 ~~~~i~~~~~~~~gi~~ItlnRP~~~NAl~~~m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG~~f~ag~Dl~~~~~   95 (297)
T d1q52a_          16 DLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGR   95 (297)
T ss_dssp             TCSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCC-------
T ss_pred             CCcceEEEEEccCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCccEEEEecCCCcccchhhhhhhcchhhhhcc
Confidence            4566888874 6899999999995 6999999999999999999999999999999984       45777778776543


Q ss_pred             ccCCC----------cccccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCC-ceEeCcccccCCC
Q 004891           73 VHGAG----------DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVI  141 (725)
Q Consensus        73 ~~~~~----------~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~-a~~~~pe~~~Gl~  141 (725)
                      .....          ...........++ +.|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~kPvIaav~G~a~GGG~~lal~~D~~ia~~~~~~f~~pe~~~Gl~  174 (297)
T d1q52a_          96 SGYQYASGDTADTVDVARAGRLHILEVQ-RLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSF  174 (297)
T ss_dssp             ----------------------CHHHHH-HHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCGGGGTCC
T ss_pred             cccccccccccchhhhHHHHHHHHHHHH-HHHHhcCCeEEEEEcceeeeccchhhhhhhccccccccccceeeeeccccc
Confidence            21110          0111122234555 6789999999999999999999999999999999865 5799999999999


Q ss_pred             CCchhhchHhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChH
Q 004891          142 PGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLS  221 (725)
Q Consensus       142 p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~  221 (725)
                      |+++++++|+|++|.++|++++++|++++|+||+++||||+|||++++.+.+.++++++++.|+.+++            
T Consensus       175 p~~~~~~~L~r~iG~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~el~~~~~~~a~~l~~~~~~a~~------------  242 (297)
T d1q52a_         175 DGGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAKSPQAQR------------  242 (297)
T ss_dssp             CCSTTTHHHHHHHCHHHHHHHHHHCCEECHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH------------
T ss_pred             cccccccccccccCccceeeccccccccchHhhhhhccccccCchHHhhHHHHHHhhhhccCCHHHHH------------
Confidence            99999999999999999999999999999999999999999999999999999999999998875433            


Q ss_pred             HHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhhhhhcCCC
Q 004891          222 EAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (725)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  296 (725)
                                              .+|+.++.. ...+.+....|.+.+..++.|+|++|++++|++||+|+..|
T Consensus       243 ------------------------~~K~~~~~~-~~~~~~~~~~~~~~~~~~~~s~d~~Egv~AF~eKR~P~f~~  292 (297)
T d1q52a_         243 ------------------------MLKFAFNLL-DDGLVGQQLFAGEATRLAYMTDEAVEGRDAFLQKRPPDWSP  292 (297)
T ss_dssp             ------------------------HHHHHHHHT-TTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCTT
T ss_pred             ------------------------HHHHHHHHh-hcChHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCCC
Confidence                                    345555543 34455566678888999999999999999999999998755

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=5.8e-45  Score=371.22  Aligned_cols=243  Identities=21%  Similarity=0.288  Sum_probs=215.3

Q ss_pred             CcEEEEEe-cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-CCcCCCCchhhhhccCCCcccc
Q 004891            4 PRVTMEVG-NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVFQKVHGAGDVSL   81 (725)
Q Consensus         4 ~~i~~~~~-~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~-~F~aG~Dl~~~~~~~~~~~~~~   81 (725)
                      +.|.++.+ ++||++||||||+.|+||.+|+++|.++++.++.|+++++|||+|.|+ +||+|+|++++..... .....
T Consensus         2 ~~ilve~~~~~gIa~itln~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~~Fs~G~Dl~~~~~~~~-~~~~~   80 (249)
T d1sg4a1           2 QRVLVEPDAGAGVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSP-AHYAG   80 (249)
T ss_dssp             CSEEEEEETTTTEEEEEECCTTTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCH-HHHHH
T ss_pred             CcEEEEEECCCCEEEEEECCCCcCCCCHHHHHHHHHHHHHHHhCCCccEEEEEeccceeEeccccccccccccc-ccccc
Confidence            45777774 578999999999999999999999999999999999999999999886 6999999999864321 22333


Q ss_pred             cchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceE--eCcccccCCCCCchhhchHhhhhCHHHH
Q 004891           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL--GLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (725)
Q Consensus        82 ~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~--~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  159 (725)
                      +.....+++ ++|.++||||||+|||+|+|||++|+++||+||++++++|  ++||+++|++|++|++++|++++|..++
T Consensus        81 ~~~~~~~~~-~~l~~~~kpvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~pe~~~Gl~p~~g~~~~l~~~iG~~~a  159 (249)
T d1sg4a1          81 YWKAVQELW-LRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAA  159 (249)
T ss_dssp             HHHHHHHHH-HHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHH
T ss_pred             cchhhHHHH-HhhhcCccccchhhcccccccccccccccccceeeccccccccccccccccccccccccccccccccccc
Confidence            444555666 6799999999999999999999999999999999999876  7899999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 004891          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (725)
Q Consensus       160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (725)
                      ++|+++|++++|++|+++||||+|+|++++.+++.++++++++.|+.+++                              
T Consensus       160 ~~lll~g~~~~a~~A~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------  209 (249)
T d1sg4a1         160 ERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAIPDHARQ------------------------------  209 (249)
T ss_dssp             HHHHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH------------------------------
T ss_pred             cccccccccccHHHHHhhccccccCChHHHHHHHHHHHHHHHcCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998875433                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHhHHHHHH
Q 004891          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVH  284 (725)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~  284 (725)
                            .+|+.++......+.+.++.|.+.+...+.+++++++++
T Consensus       210 ------~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~~e~~~~~le  248 (249)
T d1sg4a1         210 ------LTKAMMRKATASRLVTQRDADVQNFVSFISKDSIQKSLQ  248 (249)
T ss_dssp             ------HHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSHHHHHHHT
T ss_pred             ------HHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHhcC
Confidence                  456677777777888899999999999999999998874

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=100.00  E-value=5.4e-44  Score=359.57  Aligned_cols=224  Identities=25%  Similarity=0.331  Sum_probs=194.5

Q ss_pred             EEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCcccccch
Q 004891            7 TMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSLMPD   84 (725)
Q Consensus         7 ~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~   84 (725)
                      .++.++|+|++|||||| +.|++|.+|+.+|.+++++++.|+++|+|||+|.| ++||+|+|++++.......+...+..
T Consensus         2 ~~~~~~d~I~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~i~~vVl~~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~   81 (230)
T d2a7ka1           2 VFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWID   81 (230)
T ss_dssp             EEEEEETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHH
T ss_pred             EEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCcccccceeccchhhhhhhcccccccccccccccccchh
Confidence            45555889999999999 68999999999999999999999999999999876 78999999999976543333344445


Q ss_pred             hHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHH
Q 004891           85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML  164 (725)
Q Consensus        85 ~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l  164 (725)
                      ...+++ +.+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+ .+|++++|..+++++++
T Consensus        82 ~~~~~~-~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~-~~l~~~iG~~~a~~l~l  159 (230)
T d2a7ka1          82 RVIDLY-QAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGA-AILGFTHGFSTMQEIIY  159 (230)
T ss_dssp             HHHHHH-HHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHH-HHHHHHHCHHHHHHHHH
T ss_pred             hhhhhh-hcccchhcceeeecccccccccccchhccchhhccccchhhhccccccccccccc-ccccccccccccccccc
Confidence            556666 6799999999999999999999999999999999999999999999999988765 57999999999999999


Q ss_pred             cCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhH
Q 004891          165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH  244 (725)
Q Consensus       165 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  244 (725)
                      +|++++|+||+++||||+|||++++.+++.++|+++++.|+.+++                                   
T Consensus       160 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~-----------------------------------  204 (230)
T d2a7ka1         160 QCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASYPASAFI-----------------------------------  204 (230)
T ss_dssp             HCCCBCHHHHHHHTCCSEEECHHHHHHHHHHHHHHHHTSCHHHHH-----------------------------------
T ss_pred             ccccchHHHHHHhhhcccCCChHHHHHHHHHHHHHHHcCCHHHHH-----------------------------------
Confidence            999999999999999999999999999999999999999875443                                   


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHH
Q 004891          245 QACLDVIEEGIVHGGYSGVLKEAK  268 (725)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~l~~E~~  268 (725)
                       .+|+.+++.....+++.++.|+.
T Consensus       205 -~~K~~l~~~~~~~l~~~~~~~~a  227 (230)
T d2a7ka1         205 -NTKRAVNKPFIHLLEQTRDASKA  227 (230)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhccHHHHHHHHHH
Confidence             45667777666666776666543

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-42  Score=356.65  Aligned_cols=185  Identities=24%  Similarity=0.282  Sum_probs=162.5

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc--
Q 004891            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV--   79 (725)
Q Consensus         3 ~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~--   79 (725)
                      ++.|.+++ +++|++||||||+ .|++|.+|+.+|.+++++++.|+++++|||||.|++||+|+||+++.........  
T Consensus         4 ~e~i~~~~-~~~v~~Itlnrp~~~Na~~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~   82 (266)
T d1pjha_           4 NEKISYRI-EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKY   82 (266)
T ss_dssp             BTTEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------CC
T ss_pred             CCeEEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccchhHHHHHhccccccccc
Confidence            57899999 8999999999995 7999999999999999999999999999999999999999999998754322111  


Q ss_pred             --------cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEee-CCceEeCcccccCCCCCchhhchH
Q 004891           80 --------SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVIPGFGGTQRL  150 (725)
Q Consensus        80 --------~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~-~~a~~~~pe~~~Gl~p~~g~~~~l  150 (725)
                              ..+......++ ..+.++||||||+|||+|+|||++|+++||+|||+ +.++|++||+++|++|++|++++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~-~~l~~~~kP~IAav~G~a~GgG~~lal~~D~~ia~~~~~~~~~pe~~lGl~p~~g~~~~l  161 (266)
T d1pjha_          83 PSETSKWVSNFVARNVYVT-DAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSL  161 (266)
T ss_dssp             SSHHHHHHHHTHHHHHHHH-HHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHH-HHHHhcchhhhhhhhcccccccccchhccchhhhhhcccccccccccccccccccccccc
Confidence                    11222333455 66999999999999999999999999999999997 557899999999999999999999


Q ss_pred             hhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchH
Q 004891          151 PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL  189 (725)
Q Consensus       151 ~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l  189 (725)
                      +|++|..+|++|+++|++++|+||+++||||+|++.++.
T Consensus       162 ~r~~g~~~a~~llltg~~~~a~eA~~~Glv~~v~~~~~~  200 (266)
T d1pjha_         162 PLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSS  200 (266)
T ss_dssp             HHHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTT
T ss_pred             ccccccchhhhhhccCCcCCHHHHHHCCCEeEeeCchhh
Confidence            999999999999999999999999999999999976543

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=3.4e-42  Score=350.42  Aligned_cols=205  Identities=20%  Similarity=0.291  Sum_probs=184.4

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 004891            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (725)
Q Consensus         1 M~~~~i~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (725)
                      |.|++|.+++ +++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++..... .+.
T Consensus        10 ~~y~~i~~~~-~~~v~~itln~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vvl~g~g~~FsaG~Dl~~~~~~~~-~~~   87 (249)
T d1szoa_          10 QKYENIRLER-DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLGTP-HDW   87 (249)
T ss_dssp             TSCTTEEEEE-ETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCSSH-HHH
T ss_pred             CCCCeEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcceEeeecccccccccchhhhhhcccc-cch
Confidence            4588899999 7899999999996 699999999999999999999999999999999999999999999854322 223


Q ss_pred             cccchhHHHHHHHHHhhCCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEe-CcccccCCCCCchhhchHhhhhCHHH
Q 004891           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLG-LPELTLGVIPGFGGTQRLPRLVGLSK  158 (725)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~-~pe~~~Gl~p~~g~~~~l~r~vG~~~  158 (725)
                      ..+....+.++ +.+.++||||||+|||+|.| |++|+++||+||++++++|. +||+++|++|++|++++|+|++|..+
T Consensus        88 ~~~~~~~~~l~-~~i~~~~~pvIa~v~g~~~G-G~~l~l~~D~ria~~~a~f~~~pe~~~g~~p~~g~~~~l~r~ig~~~  165 (249)
T d1szoa_          88 DEIIFEGQRLL-NNLLSIEVPVIAAVNGPVTN-APEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNR  165 (249)
T ss_dssp             HHHHHHHHHHH-HHHHHCCSCEEEEECSCBCS-STHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHH
T ss_pred             hhhhhhhhhhh-hhcccCcccceeeecccccc-ccccccccccccccCCcEEEEeeccccccccccccccccccccCccc
Confidence            33344455666 67999999999999998854 77999999999999999995 79999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhh
Q 004891          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR  209 (725)
Q Consensus       159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~  209 (725)
                      +++|+++|++++++||+++||||+|||++++.+++.++|+++++.|+.+++
T Consensus       166 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~  216 (249)
T d1szoa_         166 GRYFLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEKPLLARR  216 (249)
T ss_dssp             HHHHHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             eeeecccCCCCCHHHHHHhCCcCcccCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            999999999999999999999999999999999999999999999886543

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=5.5e-38  Score=304.44  Aligned_cols=185  Identities=32%  Similarity=0.626  Sum_probs=180.9

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccc
Q 004891          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (725)
Q Consensus       306 ~~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l  385 (725)
                      ++|+||+|||+|+||++||..++++|++|++||++++.++++.+++.+.+.+...++.+++...+..++++..+++++++
T Consensus         2 ~~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   81 (186)
T d1wdka3           2 KDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDF   81 (186)
T ss_dssp             CCCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTG
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccccccc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCC
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS  465 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~  465 (725)
                      .+||+||||+||++++|+++|++|++++++++||+||||+++++++++.+.+|+||+|+|||+|++.+|+|||++|+.|+
T Consensus        82 ~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~~~~~p~r~~g~Hf~nP~~~~~lVEiv~~~~T~  161 (186)
T d1wdka3          82 GNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSS  161 (186)
T ss_dssp             GGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEEEECSSCC
T ss_pred             cccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHHhccCchheEeeccccCcccCCeEEECCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCeeEEEcCCc
Q 004891          466 AQVILDLMTVGKIIKKVPVVVGNCT  490 (725)
Q Consensus       466 ~e~~~~~~~l~~~lGk~~v~v~d~~  490 (725)
                      +++++.+..+++.+||.||+++|+|
T Consensus       162 ~~~~~~~~~~~~~lgk~pv~v~d~P  186 (186)
T d1wdka3         162 DLAVATTVAYAKKMGKNPIVVNDCP  186 (186)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred             HHHHHHHHHHHHHcCCEEEEEeccC
Confidence            9999999999999999999999987

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-37  Score=303.36  Aligned_cols=185  Identities=33%  Similarity=0.521  Sum_probs=175.7

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCC-----HHHHHHhhcCccccc
Q 004891          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT-----QDKANNALKMLKGVL  380 (725)
Q Consensus       306 ~~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~-----~~~~~~~~~~i~~~~  380 (725)
                      +.|+||+|||+|.||++||..++++|++|++||++++.++++.+++++.+...++++...     .+..+..++++..++
T Consensus         2 ~~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~   81 (192)
T d1f0ya2           2 IIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST   81 (192)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES
T ss_pred             ceeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccc
Confidence            468999999999999999999999999999999999999999999999999999988874     445566778999888


Q ss_pred             Cc-ccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEe
Q 004891          381 DY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV  459 (725)
Q Consensus       381 ~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii  459 (725)
                      ++ +++++||+||||+||++++|+++|++|++.+++++|++||||++++++++..+.+|+||+|+|||||++.+|+|||+
T Consensus        82 d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~HffnP~~~~~lVEIv  161 (192)
T d1f0ya2          82 DAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVI  161 (192)
T ss_dssp             CHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEE
T ss_pred             hhHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccchhhhhccCHhHEEeeccccccCcccEEEEc
Confidence            87 66999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCc
Q 004891          460 RTERTSAQVILDLMTVGKIIKKVPVVVGNCT  490 (725)
Q Consensus       460 ~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~  490 (725)
                      +|+.|++++++.+..|++.+||.||+++|.|
T Consensus       162 ~g~~T~~~~i~~~~~~~~~lgk~pV~v~D~P  192 (192)
T d1f0ya2         162 KTPMTSQKTFESLVDFSKALGKHPVSCKDTP  192 (192)
T ss_dssp             CCTTCCHHHHHHHHHHHHHTTCEEEEECSCT
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCEEEEeeccC
Confidence            9999999999999999999999999999987

>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.93  E-value=1.2e-26  Score=196.30  Aligned_cols=94  Identities=30%  Similarity=0.588  Sum_probs=90.6

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCCCCCCC
Q 004891          619 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPS  698 (725)
Q Consensus       619 ~~~~~i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~  698 (725)
                      +++++|+||++++++|||++|+++||+.|++|||.++++|+|||+|+||||+|+|.+|+++++++++.+. +++++|+|+
T Consensus         2 ~~d~~IvnRll~~~~nEa~~~leeGia~~~~diD~~~~~g~GfP~~~gGp~~~~D~~G~~~~~~~~~~l~-~~g~r~~p~   80 (95)
T d1wdka2           2 VTDEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQYA-ELGALYHPT   80 (95)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHCHHHHHHHHHHTG-GGCGGGCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHccCChhhCcHHHHHHHHCHHHHHHHHHHHH-hhCCCCCCC
Confidence            6899999999999999999999999998999999999999999999999999999999999999999985 589999999


Q ss_pred             HHHHHHHHcCCCCCC
Q 004891          699 RFLEERATKGIPLSA  713 (725)
Q Consensus       699 ~~l~~~~~~g~gf~~  713 (725)
                      ++|++|+|+|+|||-
T Consensus        81 ~~L~~~~~~g~~Fyg   95 (95)
T d1wdka2          81 AKLREMAKNGQSFFG   95 (95)
T ss_dssp             HHHHHHHHTTCCSCC
T ss_pred             HHHHHHHHhCcCCCC
Confidence            999999999999993

>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.92  E-value=9.3e-26  Score=201.63  Aligned_cols=106  Identities=41%  Similarity=0.696  Sum_probs=91.2

Q ss_pred             chhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHhhCCCC--CCCcHHHHHHH
Q 004891          491 GFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLL  568 (725)
Q Consensus       491 Gfi~nRl~~a~~~Ea~~l~~~Gv~~~dID~~~~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~--~~~~~~l~~~v  568 (725)
                      |||+||++.++++||++++++|++|++||.++..+|+|+|||+++|.+|||+++++.+.+.+.++++  ..+++++++||
T Consensus         1 GFi~NRi~~~~~~ea~~ll~eG~~~~~ID~a~~~~G~p~Gpf~l~D~vGLd~~~~v~~~~~~~~~~~~~~~~~~~l~~mv   80 (124)
T d1wdka1           1 GFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALY   80 (124)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHHHHHCHHHHCCSSCCHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCCCHHHHHHhcchHHHHHHHHHHHHhcCcccccCcchHHHHHH
Confidence            8999999999999999999999999999999988999999999999999999999999999988764  23778999999


Q ss_pred             HcCCCccccCceeeeccCCCCCCCCCCc
Q 004891          569 KSGRNGKANGKGLYTYEKGSKPKPDPSV  596 (725)
Q Consensus       569 ~~g~~G~k~g~Gfy~y~~~~~~~~~~~~  596 (725)
                      ++|++|+|||+|||+|+++++..+++..
T Consensus        81 ~~g~lG~Ktg~GFY~y~~~~~~~~~~~~  108 (124)
T d1wdka1          81 EAKRLGQKNGKGFYAYEADKKGKQKKLV  108 (124)
T ss_dssp             HTTCCBTTTTBSSSEEC-------CEEC
T ss_pred             HcCCccccCCcEeeEcCCCCCCCCCCCC
Confidence            9999999999999999875544443333

>d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.5e-25  Score=190.08  Aligned_cols=95  Identities=33%  Similarity=0.562  Sum_probs=89.5

Q ss_pred             chhhhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHHHHhhCCCC--CCCcHHHHH
Q 004891          491 GFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDL  566 (725)
Q Consensus       491 Gfi~nRl~~a~~~Ea~~l~~~Gv-~~~dID~~~-~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~--~~~~~~l~~  566 (725)
                      |||+||++.++++||++++++|+ +|++||.++ .++|+|+|||+++|.+|||++.++++.+.+.++++  +.|++++++
T Consensus         1 GFi~NRil~~~~~ea~~ll~eG~a~~~~iD~~~~~~~G~p~Gpf~~~D~vGld~~~~v~~~~~~~~~~~~~~~~~~~l~~   80 (99)
T d1f0ya1           1 GFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSPSLNK   80 (99)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCSSCHHHHHHHHCHHHHHHHHHHHHHTTTTCGGGCCCHHHHH
T ss_pred             CeehHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcccCCCCchHHHHHhhcHHHHHHHHHHHHHhcccccccCCCHHHHH
Confidence            89999999999999999999997 999999999 78999999999999999999999999998887663  348899999


Q ss_pred             HHHcCCCccccCceeeecc
Q 004891          567 LLKSGRNGKANGKGLYTYE  585 (725)
Q Consensus       567 ~v~~g~~G~k~g~Gfy~y~  585 (725)
                      |+++|++|+|||+|||+|+
T Consensus        81 mv~~g~lG~ksg~GfY~Y~   99 (99)
T d1f0ya1          81 LVAENKFGKKTGEGFYKYK   99 (99)
T ss_dssp             HHHTTCCBTTTTBSSSBCC
T ss_pred             HHHcCCCcccCCCcccccC
Confidence            9999999999999999995

>d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=8.7e-20  Score=156.57  Aligned_cols=88  Identities=26%  Similarity=0.389  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCC--CCCCCHHH
Q 004891          624 IVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN--FFKPSRFL  701 (725)
Q Consensus       624 i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~--~~~p~~~l  701 (725)
                      |+||++.++++||++|+++|++ ||++||.+++.++|||+   |||+++|.+|+|++.++++.|.+..++  ++.|+++|
T Consensus         3 i~NRil~~~~~ea~~ll~eG~a-~~~~iD~~~~~~~G~p~---Gpf~~~D~vGld~~~~v~~~~~~~~~~~~~~~~~~~l   78 (99)
T d1f0ya1           3 IVNRLLVPYLMEAIRLYERGDA-SKEDIDTAMKLGAGYPM---GPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSPSL   78 (99)
T ss_dssp             THHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHCCSS---CHHHHHHHHCHHHHHHHHHHHHHTTTTCGGGCCCHHH
T ss_pred             ehHHHHHHHHHHHHHHHHHcCC-CHHHHHHHhhcccCCCC---chHHHHHhhcHHHHHHHHHHHHHhcccccccCCCHHH
Confidence            6899999999999999999998 89999999999999998   999999999999999999999987764  88999999


Q ss_pred             HHHH-------HcCCCCCCCC
Q 004891          702 EERA-------TKGIPLSAPV  715 (725)
Q Consensus       702 ~~~~-------~~g~gf~~~~  715 (725)
                      ++|+       |+|+|||+|.
T Consensus        79 ~~mv~~g~lG~ksg~GfY~Y~   99 (99)
T d1f0ya1          79 NKLVAENKFGKKTGEGFYKYK   99 (99)
T ss_dssp             HHHHHTTCCBTTTTBSSSBCC
T ss_pred             HHHHHcCCCcccCCCcccccC
Confidence            9999       7799999994

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.75  E-value=1.1e-17  Score=157.79  Aligned_cols=153  Identities=17%  Similarity=0.177  Sum_probs=118.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  388 (725)
                      +||+|||+|.||++||..|.++|++|++||++++.++++.+           .+.++           ...++.+.+++|
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~-----------~~~~~-----------~~~~~~~~~~~~   58 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE-----------RQLVD-----------EAGQDLSLLQTA   58 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TTSCS-----------EEESCGGGGTTC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHH-----------hhccc-----------eeeeeccccccc
Confidence            47999999999999999999999999999999998777542           22211           234556889999


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCC------------CCee
Q 004891          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHV------------MPLL  456 (725)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~------------~~lv  456 (725)
                      |+||.|+|  .....++++++.+.++++++|++.+|. .............++++.|++.++..            ...+
T Consensus        59 DiIilavp--~~~~~~vl~~l~~~l~~~~iv~~~~s~-~~~~~~~~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~  135 (165)
T d2f1ka2          59 KIIFLCTP--IQLILPTLEKLIPHLSPTAIVTDVASV-KTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPY  135 (165)
T ss_dssp             SEEEECSC--HHHHHHHHHHHGGGSCTTCEEEECCSC-CHHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEE
T ss_pred             ccccccCc--Hhhhhhhhhhhhhhcccccceeecccc-chHHHHHHHHhhcccccceeeecccccchhhhcccccCCCeE
Confidence            99999999  778889999999999999999765544 33322222222347899999765422            2345


Q ss_pred             eEecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q 004891          457 EIVRTERTSAQVILDLMTVGKIIKKVPVVV  486 (725)
Q Consensus       457 eii~~~~t~~e~~~~~~~l~~~lGk~~v~v  486 (725)
                      -+++...+++++++.++++++.+|.++++|
T Consensus       136 il~~~~~~~~~~~~~v~~l~~~lG~~v~~c  165 (165)
T d2f1ka2         136 VLTPTEYTDPEQLACLRSVLEPLGVKIYLC  165 (165)
T ss_dssp             EEEECTTCCHHHHHHHHHHHGGGTCEEEEC
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHhCCEEEeC
Confidence            577888899999999999999999998764

>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.71  E-value=6.9e-18  Score=142.02  Aligned_cols=82  Identities=15%  Similarity=0.324  Sum_probs=76.0

Q ss_pred             hhhhhhHHHHHHHHHHHHcCC--CHHHHHHHH-HhcCCCc---cHHHHHHhhchHHHHHHHHHHHhhCCCCCCCcHHHHH
Q 004891          493 AVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDL  566 (725)
Q Consensus       493 i~nRl~~a~~~Ea~~l~~~Gv--~~~dID~~~-~~~G~p~---Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~~~~l~~  566 (725)
                      |+||++.+++|||++++++|+  +++|||.++ .++|||+   |||+++|.+|+|+++++++.+. ++++++.|++++++
T Consensus         7 IvnRll~~~~nEa~~~leeGia~~~~diD~~~~~g~GfP~~~gGp~~~~D~~G~~~~~~~~~~l~-~~g~r~~p~~~L~~   85 (95)
T d1wdka2           7 IINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQYA-ELGALYHPTAKLRE   85 (95)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHCHHHHHHHHHHTG-GGCGGGCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHccCChhhCcHHHHHHHHCHHHHHHHHHHHH-hhCCCCCCCHHHHH
Confidence            899999999999999999996  899999999 9999999   9999999999999999999874 58887779999999


Q ss_pred             HHHcCCCccccCceee
Q 004891          567 LLKSGRNGKANGKGLY  582 (725)
Q Consensus       567 ~v~~g~~G~k~g~Gfy  582 (725)
                      |+++|       +|||
T Consensus        86 ~~~~g-------~~Fy   94 (95)
T d1wdka2          86 MAKNG-------QSFF   94 (95)
T ss_dssp             HHHTT-------CCSC
T ss_pred             HHHhC-------cCCC
Confidence            98654       6999

>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.69  E-value=1.6e-17  Score=147.70  Aligned_cols=90  Identities=14%  Similarity=0.227  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchhHHHHHhCHHHHHHHHHHHHHHhCC--CCCCCHHH
Q 004891          624 IVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN--FFKPSRFL  701 (725)
Q Consensus       624 i~~r~~~~~~~ea~~~l~~gi~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~--~~~p~~~l  701 (725)
                      |.||++.++++||++++++|+  ++++||.++. ++|||+   |||+++|.+|+|++.++++.+.+.+++  .+.|++++
T Consensus         3 i~NRi~~~~~~ea~~ll~eG~--~~~~ID~a~~-~~G~p~---Gpf~l~D~vGLd~~~~v~~~~~~~~~~~~~~~~~~~l   76 (124)
T d1wdka1           3 LVNRVLFPYFGGFAKLVSAGV--DFVRIDKVME-KFGWPM---GPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAI   76 (124)
T ss_dssp             THHHHHHHHHHHHHHHHHTTC--CHHHHHHHHH-HHTCSS---CHHHHHHHHCHHHHHHHHHHHHHHCHHHHCCSSCCHH
T ss_pred             hHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHh-hccCCC---CHHHHHHhcchHHHHHHHHHHHHhcCcccccCcchHH
Confidence            689999999999999999996  5999999985 899998   999999999999999999999888764  57888999


Q ss_pred             HHHH-------HcCCCCCCCCCCCh
Q 004891          702 EERA-------TKGIPLSAPVSSSS  719 (725)
Q Consensus       702 ~~~~-------~~g~gf~~~~~~~~  719 (725)
                      ++|+       |+|+|||+|++..+
T Consensus        77 ~~mv~~g~lG~Ktg~GFY~y~~~~~  101 (124)
T d1wdka1          77 DALYEAKRLGQKNGKGFYAYEADKK  101 (124)
T ss_dssp             HHHHHTTCCBTTTTBSSSEEC----
T ss_pred             HHHHHcCCccccCCcEeeEcCCCCC
Confidence            9999       78999999976543

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.68  E-value=1.6e-16  Score=150.63  Aligned_cols=153  Identities=16%  Similarity=0.162  Sum_probs=116.9

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc--c
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--S  383 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~--~  383 (725)
                      |+||+|||+|.||++||..|.+.|+  +|++||++++.++.+.+           .+.++           ...++.  .
T Consensus         1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~-----------~~~~~-----------~~~~~~~~~   58 (171)
T d2g5ca2           1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD-----------LGIID-----------EGTTSIAKV   58 (171)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH-----------TTSCS-----------EEESCGGGG
T ss_pred             CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHH-----------hhcch-----------hhhhhhhhh
Confidence            5789999999999999999999996  78999999999887642           22211           112222  3


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhcccCCCCcEEEEecCCCCC----------
Q 004891          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSSQDRIIGAHFFSPAH----------  451 (725)
Q Consensus       384 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~~~~r~ig~h~~~p~~----------  451 (725)
                      ...++|+||.|+|  ++...+++.++.+++++++++++.+|+...  ..+...+  +.+|++.||.....          
T Consensus        59 ~~~~~dlIila~p--~~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~--~~~~i~~hPm~G~e~sG~~~a~~~  134 (171)
T d2g5ca2          59 EDFSPDFVMLSSP--VRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENIL--GKRFVGGHPIAGTEKSGVEYSLDN  134 (171)
T ss_dssp             GGTCCSEEEECSC--HHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHH--GGGEECEEEECCCSCCSGGGCCSS
T ss_pred             hccccccccccCC--chhhhhhhhhhhccccccccccccccccHHHHHHHHHhh--cccccccccccccccccHHHHHHH
Confidence            3468999999999  777888999999999999999887775443  2333322  45899999964321          


Q ss_pred             --CCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q 004891          452 --VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV  486 (725)
Q Consensus       452 --~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v  486 (725)
                        .++.+-++++..++++.++.++.|++.+|..++.+
T Consensus       135 Lf~g~~~il~p~~~~~~~~~~~v~~~~~~lG~~v~~M  171 (171)
T d2g5ca2         135 LYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYM  171 (171)
T ss_dssp             TTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEEEC
T ss_pred             hhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEeC
Confidence              23445678898999999999999999999887753

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.60  E-value=6.3e-16  Score=144.79  Aligned_cols=152  Identities=17%  Similarity=0.186  Sum_probs=106.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      +||||||+|.||.+||.+|+++||+|++||+++++++...+           .+             .....+. +.+++
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~-----------~~-------------~~~~~~~~e~~~~   56 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIA-----------AG-------------AETASTAKAIAEQ   56 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TT-------------CEECSSHHHHHHH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHH-----------hh-------------hhhcccHHHHHhC
Confidence            47999999999999999999999999999999998776532           11             2233444 66889


Q ss_pred             CCEEEEeccCChHHHHHHH--HHHHHhCCCCeEEEecCCCCChH--HHhcccC-CCCcEEEEecCCCC---CCCCeeeEe
Q 004891          388 VDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEIV  459 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~-~~~r~ig~h~~~p~---~~~~lveii  459 (725)
                      ||+||.|||++.+++..++  ..+.+.++++++|++.+++.+-.  ++++.+. ..-+|+..+....+   ..+++.-++
T Consensus        57 ~d~ii~~v~~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapv~gg~~~a~~g~l~~~~  136 (161)
T d1vpda2          57 CDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMV  136 (161)
T ss_dssp             CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEE
T ss_pred             CCeEEEEcCCHHHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceecccccCChhHHhcCCeEEEE
Confidence            9999999998777766665  34888899999988655444322  3333332 22344443222111   122334344


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004891          460 RTERTSAQVILDLMTVGKIIKKVPVVVG  487 (725)
Q Consensus       460 ~~~~t~~e~~~~~~~l~~~lGk~~v~v~  487 (725)
                      .|   +++++++++++++.+|++.++++
T Consensus       137 gG---~~~~~~~~~~il~~~~~~i~~~G  161 (161)
T d1vpda2         137 GG---DKAIFDKYYDLMKAMAGSVVHTG  161 (161)
T ss_dssp             ES---CHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             cC---CHHHHHHHHHHHHHhcCceEECC
Confidence            44   58999999999999999988874

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=99.58  E-value=6.6e-15  Score=136.33  Aligned_cols=148  Identities=12%  Similarity=0.065  Sum_probs=120.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCC-CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      +||+|||+|.||.+|+..|.++| ++|++||+++++++...++                       ..+...++.+.+.+
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~-----------------------~~~~~~~~~~~v~~   57 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKE-----------------------LGVETSATLPELHS   57 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHH-----------------------TCCEEESSCCCCCT
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhh-----------------------cccccccccccccc
Confidence            48999999999999999998887 8999999999987765321                       12455667778899


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEe-cCCCCCH
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTERTSA  466 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii-~~~~t~~  466 (725)
                      ||+||.||+  ++...++++++   .+.+.+++|..++.+++.+.+.+....+++..+|+.|......+..+ .+...++
T Consensus        58 ~Div~lavk--P~~~~~v~~~l---~~~~~~viS~~ag~~~~~l~~~l~~~~~iir~mpn~p~~~~~g~t~~~~~~~~~~  132 (152)
T d1yqga2          58 DDVLILAVK--PQDMEAACKNI---RTNGALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVSE  132 (152)
T ss_dssp             TSEEEECSC--HHHHHHHHTTC---CCTTCEEEECCTTCCHHHHHHHTTSCCCEEEEECCGGGGGTCEEEEEECCTTSCH
T ss_pred             cceEEEecC--HHHHHHhHHHH---hhcccEEeecccCCCHHHHHHHhCcCcceEeecccchhHhcCCcEEEEeCCCCCH
Confidence            999999997  55445555444   34578888999999999999988777789999999999888777655 5666789


Q ss_pred             HHHHHHHHHHHHcCCeeE
Q 004891          467 QVILDLMTVGKIIKKVPV  484 (725)
Q Consensus       467 e~~~~~~~l~~~lGk~~v  484 (725)
                      +..+.+++++..+|+...
T Consensus       133 ~~~~~v~~l~~~~G~~~~  150 (152)
T d1yqga2         133 TDRRIADRIMKSVGLTVW  150 (152)
T ss_dssp             HHHHHHHHHHHTTEEEEE
T ss_pred             HHHHHHHHHHHhCCCEEE
Confidence            999999999999996643

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=99.57  E-value=4e-15  Score=137.88  Aligned_cols=142  Identities=15%  Similarity=0.100  Sum_probs=109.8

Q ss_pred             CCCCCCcceEEEEc-CCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccccc
Q 004891          302 GLKPRGVRKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  380 (725)
Q Consensus       302 ~~~~~~~~kIaVIG-~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~  380 (725)
                      .++...|+||+||| +|.||++||.+|.++||+|++||++++....                                  
T Consensus         3 ~~~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~----------------------------------   48 (152)
T d2pv7a2           3 KTINSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAE----------------------------------   48 (152)
T ss_dssp             CCSCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHH----------------------------------
T ss_pred             cccCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccc----------------------------------
Confidence            45667899999999 8999999999999999999999998754222                                  


Q ss_pred             CcccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhcccCCCCcEEEEecCCCCCCC----C
Q 004891          381 DYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSSQDRIIGAHFFSPAHVM----P  454 (725)
Q Consensus       381 ~~~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~~~~r~ig~h~~~p~~~~----~  454 (725)
                        +.+.++|+++.++|  ......++.++.+.+++++++++.+|+.+.  ..+.+.  .+.+|++.||...+...    +
T Consensus        49 --~~~~~~~~v~~~~~--~~~~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~--~~~~~v~~hP~~Gp~~~~~~g~  122 (152)
T d2pv7a2          49 --SILANADVVIVSVP--INLTLETIERLKPYLTENMLLADLTSVKREPLAKMLEV--HTGAVLGLHPMFGADIASMAKQ  122 (152)
T ss_dssp             --HHHTTCSEEEECSC--GGGHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHH--CSSEEEEEEECSCTTCSCCTTC
T ss_pred             --hhhhhccccccccc--hhhheeeeecccccccCCceEEEecccCHHHHHHHHHH--ccCCEEEecccCCCcccccCCc
Confidence              23567999999998  677778999999999999999876654332  233232  35689999997665443    3


Q ss_pred             eeeEecCCCCCHHHHHHHHHHHHHcCCeeEE
Q 004891          455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVV  485 (725)
Q Consensus       455 lveii~~~~t~~e~~~~~~~l~~~lGk~~v~  485 (725)
                      .+.++++.  +++.++++.++++.+|.+++.
T Consensus       123 ~~v~~~g~--~~~~~~~~~~ll~~~Ga~v~e  151 (152)
T d2pv7a2         123 VVVRCDGR--FPERYEWLLEQIQIWGAKIYQ  151 (152)
T ss_dssp             EEEEEEEE--CGGGTHHHHHHHHHTTCEEEE
T ss_pred             EEEEecCC--CHHHHHHHHHHHHHhCCEEEe
Confidence            44445554  577899999999999998875

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.55  E-value=9e-15  Score=135.26  Aligned_cols=146  Identities=13%  Similarity=0.079  Sum_probs=116.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      +||+|||+|.||++|+..|.++|++|++|++++++.++..+.+                       .+..+.+. +.+++
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~-----------------------g~~~~~~~~~~~~~   57 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL-----------------------ALPYAMSHQDLIDQ   57 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH-----------------------TCCBCSSHHHHHHT
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhcccc-----------------------ceeeechhhhhhhc
Confidence            4899999999999999999999999999999998876543210                       12334444 66789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeee-EecCCCCCH
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTERTSA  466 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lve-ii~~~~t~~  466 (725)
                      ||+||.||+  ++...++    .+.+.++.+|+|.++++.++.+.+.+....+++.++|+.|........ +..+..+++
T Consensus        58 ~dvIilavk--p~~~~~v----l~~l~~~~~iis~~agi~~~~l~~~l~~~~~ivr~mPN~~~~v~~g~~~~~~~~~~~~  131 (152)
T d2ahra2          58 VDLVILGIK--PQLFETV----LKPLHFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVSQ  131 (152)
T ss_dssp             CSEEEECSC--GGGHHHH----HTTSCCCSCEEECCTTCCHHHHHHHHCTTSCEEEEECCGGGGGTCEEEEEEECTTCCH
T ss_pred             cceeeeecc--hHhHHHH----hhhcccceeEecccccccHHHHHhhhcccccchhhccchhhhcCccceEEEeCCCCCH
Confidence            999999997  4444444    445677888889999999999998887777899999988777665544 556777899


Q ss_pred             HHHHHHHHHHHHcCCee
Q 004891          467 QVILDLMTVGKIIKKVP  483 (725)
Q Consensus       467 e~~~~~~~l~~~lGk~~  483 (725)
                      +..+.++++++.+|+..
T Consensus       132 ~~~~~v~~l~~~~G~~~  148 (152)
T d2ahra2         132 ELQARVRDLTDSFGSTF  148 (152)
T ss_dssp             HHHHHHHHHHHTTEEEE
T ss_pred             HHHHHHHHHHHhCCCEE
Confidence            99999999999999653

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.50  E-value=4.5e-14  Score=132.03  Aligned_cols=151  Identities=14%  Similarity=0.145  Sum_probs=104.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      |+||+|||+|.||++||.+|+++||+|.+||+++++.+...+           .+             .....+. +.+.
T Consensus         1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~-----------~~-------------~~~~~~~~e~~~   56 (162)
T d3cuma2           1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVA-----------AG-------------ASAARSARDAVQ   56 (162)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHH-----------TT-------------CEECSSHHHHHT
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhh-----------hh-------------ccccchhhhhcc
Confidence            679999999999999999999999999999999988766432           11             1222333 6788


Q ss_pred             CCCEEEEeccCChHHHHHHHH---HHHHhCCCCeEEEecCCCCChH---HHhcccC-CCCcEEEEecCCCC---CCCCee
Q 004891          387 DVDMVIEAVIESVPLKQKIFS---ELEKACPPHCILATNTSTIDLN---IVGEKTS-SQDRIIGAHFFSPA---HVMPLL  456 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~---~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~-~~~r~ig~h~~~p~---~~~~lv  456 (725)
                      .+|+|+.|+|.+.... +++.   .+...+.++.+|+..++ ..++   ++.+.+. ..-+|+..+....|   ..+.+.
T Consensus        57 ~~diii~~v~~~~~~~-~v~~~~~~~~~~l~~g~iiid~st-~~p~~~~~~~~~~~~~gi~~~dapv~Gg~~~a~~G~l~  134 (162)
T d3cuma2          57 GADVVISMLPASQHVE-GLYLDDDGLLAHIAPGTLVLECST-IAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLT  134 (162)
T ss_dssp             SCSEEEECCSCHHHHH-HHHHSTTCHHHHSCTTCEEEECSC-CCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEE
T ss_pred             ccCeeeecccchhhHH-HHHhccccccccCCCCCEEEECCC-CCHHHHHHHHHHHHHCCCcEEecccccCccccccCCeE
Confidence            9999999999766554 4443   36777888888875444 3333   3333332 33344444322222   223344


Q ss_pred             eEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004891          457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVG  487 (725)
Q Consensus       457 eii~~~~t~~e~~~~~~~l~~~lGk~~v~v~  487 (725)
                      -++.|   +++++++++++++.+|+..++++
T Consensus       135 ~~~gG---~~~~~~~~~~il~~~~~~v~~~G  162 (162)
T d3cuma2         135 FMVGG---DAEALEKARPLFEAMGRNIFHAG  162 (162)
T ss_dssp             EEEES---CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             EEecC---CHHHHHHHHHHHHHHcCccEECc
Confidence            44454   58999999999999999988874

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=99.49  E-value=7.3e-16  Score=151.62  Aligned_cols=198  Identities=15%  Similarity=0.126  Sum_probs=137.7

Q ss_pred             HhHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcceEEEEcCCC--CcHHHHH------HHHHCCCcEEEEeCChHHH-HHH
Q 004891          277 DTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGL--MGSGIAT------AHILNNIYVVLKEVNSEYL-LKG  347 (725)
Q Consensus       277 ~~~~~~i~aF~~~r~~~~~~~~~~~~~~~~~~~kIaVIG~G~--mG~~iA~------~l~~~G~~V~~~d~~~e~~-~~~  347 (725)
                      .++..++..|..-....+..+.+.    ....+++.++|+|+  ||.+|++      +|++.|+.|++.|.+++.+ +..
T Consensus        13 ~~~a~gi~~f~~~~~~~~~~~~~~----~a~~~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~   88 (242)
T d2b0ja2          13 THAAAGITNFMRACEVAKEVGKPE----IALTHSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAH   88 (242)
T ss_dssp             HHHHHSSCCCHHHHHHHHHHTCGG----GGGCCHHHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHH
T ss_pred             chhhhccHHHHHHHhhhccCCCCc----cceeeeeeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHH
Confidence            456667777766555444333322    12356788999997  9999988      7899999999999997764 333


Q ss_pred             HHH--------HHHHHHhhHHcCC---------CCHHHHHHhhcCcccccCc-ccccCCCEEEEeccCChHHHHHHHHHH
Q 004891          348 IKT--------IEANVRGLVTRGK---------LTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSEL  409 (725)
Q Consensus       348 ~~~--------i~~~l~~~~~~g~---------~~~~~~~~~~~~i~~~~~~-~~l~~aDlVIeavpe~~~~k~~v~~~l  409 (725)
                      ...        ++..+.+..+...         +++++     ..+++++|. +++++||+||+|+|++ +.+.+++++|
T Consensus        89 ~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~~~~pEe-----~Gv~v~~d~~Eav~~ADiII~~vP~~-~~v~~Vi~~I  162 (242)
T d2b0ja2          89 LSGNPESIMPKIREVVKAKAKELPKPPKACIHLVHPED-----VGLKVTSDDREAVEGADIVITWLPKG-NKQPDIIKKF  162 (242)
T ss_dssp             HTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEESSCGGG-----GTCEEESCHHHHHTTCSEEEECCTTC-TTHHHHHHHH
T ss_pred             hcCCchhhcchHHHHHHHHHHhccCCccchhhcCCHHH-----CCCEEECCHHHHHhcCCeEEEeeecH-HHHHHHHHHH
Confidence            321        2222333333322         22221     124455665 8899999999999955 6778899999


Q ss_pred             HHhCCCCeEEEecCCCCChH---HHhcccC-CCCcEEEEecCCCCCCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEE
Q 004891          410 EKACPPHCILATNTSTIDLN---IVGEKTS-SQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVV  485 (725)
Q Consensus       410 ~~~~~~~~ii~s~tS~~~~~---~l~~~~~-~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~  485 (725)
                      .+++++++||++. ||.+..   .+.+.+. ...+|++.||..++.......++.+ .+++|.+++++++++.+|+.+++
T Consensus       163 ~~~l~~g~Iiid~-STi~~~~~~~l~e~l~~kgi~vi~~hp~a~pe~~g~~li~~~-~aseE~iekv~elles~Gk~~~v  240 (242)
T d2b0ja2         163 ADAIPEGAIVTHA-CTIPTTKFAKIFKDLGREDLNITSYHPGCVPEMKGQVYIAEG-YASEEAVNKLYEIGKIARGKAFK  240 (242)
T ss_dssp             GGGSCTTCEEEEC-SSSCHHHHHHHHHHTTCTTSEEEECBCSSCTTTCCCEEEEES-SSCHHHHHHHHHHHHHHHSCEEE
T ss_pred             HhhCCCCcEEEec-CCCcHHHHHHHHHhcccCCCEEECCCccCcCccccceEEecC-CCCHHHHHHHHHHHHHHCCCeEe
Confidence            9999999998654 444443   4444454 3568999999998876665555544 47899999999999999999887


Q ss_pred             E
Q 004891          486 V  486 (725)
Q Consensus       486 v  486 (725)
                      +
T Consensus       241 v  241 (242)
T d2b0ja2         241 M  241 (242)
T ss_dssp             E
T ss_pred             C
Confidence            5

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.25  E-value=6.9e-13  Score=125.61  Aligned_cols=154  Identities=10%  Similarity=0.019  Sum_probs=98.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      .+|||||+|.||.+||.+|+++||+|++|||++++++...+           .+...    ....+ .....+. +.+.+
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~~~~~----~~~~~-a~~~~~~~~~~~~   66 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLA-----------NEAKG----TKVLG-AHSLEEMVSKLKK   66 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHH-----------TTTTT----SSCEE-CSSHHHHHHHBCS
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------hcccc----ccccc-hhhhhhhhhhhcc
Confidence            47999999999999999999999999999999999876532           11000    00000 1111122 56788


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhcccC-CCCcEEEEecCCCC---CCCCeeeEecC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEIVRT  461 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~-~~~r~ig~h~~~p~---~~~~lveii~~  461 (725)
                      +|.+|.+++....+ .+++..+.+.++++.+++..++..+..  ++++.+. ...+++.......+   ..+. .-++.|
T Consensus        67 ~~~ii~~~~~~~~v-~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ldapvsGg~~~A~~G~-~~~~gG  144 (176)
T d2pgda2          67 PRRIILLVKAGQAV-DNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGP-SLMPGG  144 (176)
T ss_dssp             SCEEEECSCTTHHH-HHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEE
T ss_pred             cceEEEecCchHHH-HHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceeccccccCcccccCCc-EEEcCC
Confidence            99999999976554 456788999999999887655444333  3333332 22334433221111   1111 123334


Q ss_pred             CCCCHHHHHHHHHHHHHcCCee
Q 004891          462 ERTSAQVILDLMTVGKIIKKVP  483 (725)
Q Consensus       462 ~~t~~e~~~~~~~l~~~lGk~~  483 (725)
                         +++++++++++++.+++++
T Consensus       145 ---~~~~~~~~~~il~~~~~kv  163 (176)
T d2pgda2         145 ---NKEAWPHIKAIFQGIAAKV  163 (176)
T ss_dssp             ---CTTTHHHHHHHHHHHSCBC
T ss_pred             ---CHHHHHHHHHHHHHHhccc
Confidence               5778999999999999875

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=99.19  E-value=1.5e-12  Score=120.20  Aligned_cols=143  Identities=8%  Similarity=-0.066  Sum_probs=91.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCCCE
Q 004891          311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM  390 (725)
Q Consensus       311 IaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDl  390 (725)
                      |+|||+|+||.+|+..|.+.++.+.+|+|+++++++..+.           +           + ....+..+.++++|+
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~-----------~-----------~-~~~~~~~~~~~~~Di   58 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEV-----------Y-----------G-GKAATLEKHPELNGV   58 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHH-----------T-----------C-CCCCSSCCCCC---C
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhc-----------c-----------c-ccccchhhhhccCcE
Confidence            7999999999999999876555567999999998775431           1           1 222344477899999


Q ss_pred             EEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCe-------eeEecCCC
Q 004891          391 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPL-------LEIVRTER  463 (725)
Q Consensus       391 VIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~l-------veii~~~~  463 (725)
                      ||.|||++  ...+++.++   ..++.++++.+++.+...+..     ....+.||..++.....       +-+.-+  
T Consensus        59 Vil~v~d~--~i~~v~~~l---~~~~~ivi~~s~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  126 (153)
T d2i76a2          59 VFVIVPDR--YIKTVANHL---NLGDAVLVHCSGFLSSEIFKK-----SGRASIHPNFSFSSLEKALEMKDQIVFGLE--  126 (153)
T ss_dssp             EEECSCTT--THHHHHTTT---CCSSCCEEECCSSSCGGGGCS-----SSEEEEEECSCC--CTTGGGCGGGCCEEEC--
T ss_pred             EEEeccch--hhhHHHhhh---cccceeeeecccchhhhhhhh-----hccccceeeeecccccchhhhccCcEEEEe--
Confidence            99999954  334554443   247888887777777654432     23457787654322111       112112  


Q ss_pred             CCHHHHHHHHHHHHHcCCeeEEEcC
Q 004891          464 TSAQVILDLMTVGKIIKKVPVVVGN  488 (725)
Q Consensus       464 t~~e~~~~~~~l~~~lGk~~v~v~d  488 (725)
                      .++++++.++++++.+|..++++.+
T Consensus       127 gd~~~~~~~~~l~~~lG~~~~~i~~  151 (153)
T d2i76a2         127 GDERGLPIVKKIAEEISGKYFVIPS  151 (153)
T ss_dssp             CCTTTHHHHHHHHHHHCSCEEECCG
T ss_pred             CCHHHHHHHHHHHHHHCCcEEEeCC
Confidence            2578899999999999999998854

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.17  E-value=3e-11  Score=111.74  Aligned_cols=145  Identities=13%  Similarity=0.100  Sum_probs=100.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  388 (725)
                      .||||||+|.||.+||.+|+++|+.| +|+++.++..+..+..                        .......+.+.++
T Consensus         1 ekIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~   55 (156)
T d2cvza2           1 EKVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEF------------------------GSEAVPLERVAEA   55 (156)
T ss_dssp             CCEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHH------------------------CCEECCGGGGGGC
T ss_pred             CeEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHc------------------------CCcccccccccce
Confidence            37999999999999999999999865 6788877655433210                        1123344677889


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH---HHhcccCCCCcEEEEecCCCCCC--------CCeee
Q 004891          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHV--------MPLLE  457 (725)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~p~~~--------~~lve  457 (725)
                      |++|.++|.+.++. .....+.....++.+++.. |+..++   ++++.+...    +++|.+.|..        +.+.-
T Consensus        56 ~~~i~~~~~~~~v~-~~~~~l~~~~~~~~~iid~-sT~~p~~~~~~~~~~~~~----gi~~ldapVsGg~~~A~~G~L~~  129 (156)
T d2cvza2          56 RVIFTCLPTTREVY-EVAEALYPYLREGTYWVDA-TSGEPEASRRLAERLREK----GVTYLDAPVSGGTSGAEAGTLTV  129 (156)
T ss_dssp             SEEEECCSSHHHHH-HHHHHHTTTCCTTEEEEEC-SCCCHHHHHHHHHHHHTT----TEEEEECCEESHHHHHHHTCEEE
T ss_pred             eEEEecccchhhhh-hhhcccccccccccccccc-ccCCHHHHHHHHHHHHHc----CCeEEeccccCchhhhccCCEEE
Confidence            99999999766554 4567788888899988754 444443   343444322    4566554432        23444


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004891          458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGN  488 (725)
Q Consensus       458 ii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  488 (725)
                      ++.|   ++++++++++++ .++++++++++
T Consensus       130 ~vgG---~~~~~~~~~p~L-~~~~~v~~~GP  156 (156)
T d2cvza2         130 MLGG---PEEAVERVRPFL-AYAKKVVHVGP  156 (156)
T ss_dssp             EEES---CHHHHHHHGGGC-TTEEEEEEEES
T ss_pred             EEeC---CHHHHHHHHHHH-HhcCcCEEeCc
Confidence            4455   599999999999 58999888863

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.14  E-value=1.3e-11  Score=113.67  Aligned_cols=147  Identities=12%  Similarity=0.028  Sum_probs=92.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      +||+|||+|.||++||.+|+++|++|++||++++...+....                        .+....+. +.+++
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~------------------------~~~~~~~~~e~~~~   56 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERAR------------------------TVGVTETSEEDVYS   56 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHH------------------------HHTCEECCHHHHHT
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhh------------------------cccccccHHHHHhh
Confidence            489999999999999999999999999999887765443210                        01112233 67899


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhcccCCCCcEEEEecCCCCCC--CCeeeEecCCC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAHV--MPLLEIVRTER  463 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~p~~~--~~lveii~~~~  463 (725)
                      ||+||.|||.+..  .++..++....  +.+++..++..+  ...+++.+.. .+++..+...++..  ....-++.|+ 
T Consensus        57 ~diIi~~v~~~~~--~~~~~~~~~~~--~~~~id~st~~p~~~~~l~~~~~~-~~~~d~~v~g~~~~~~~~~~~~~~G~-  130 (152)
T d1i36a2          57 CPVVISAVTPGVA--LGAARRAGRHV--RGIYVDINNISPETVRMASSLIEK-GGFVDAAIMGSVRRKGADIRIIASGR-  130 (152)
T ss_dssp             SSEEEECSCGGGH--HHHHHHHHTTC--CSEEEECSCCCHHHHHHHHHHCSS-SEEEEEEECSCHHHHGGGCEEEEEST-
T ss_pred             cCeEEEEecCchH--HHHHHhhcccC--CceeeccCcCCHHHHHHHHHHHhc-cCCCcccccCCcccccCCcEEEEECC-
Confidence            9999999995543  35555565554  334443332222  3355555543 35666665544311  1122245565 


Q ss_pred             CCHHHHHHHHHHHHHcCCeeEEEcCCc
Q 004891          464 TSAQVILDLMTVGKIIKKVPVVVGNCT  490 (725)
Q Consensus       464 t~~e~~~~~~~l~~~lGk~~v~v~d~~  490 (725)
                       +.+.++    .++.+|..+.++++.|
T Consensus       131 -~~~~~~----~l~~~g~~i~~~G~~P  152 (152)
T d1i36a2         131 -DAEEFM----KLNRYGLNIEVRGREP  152 (152)
T ss_dssp             -THHHHH----GGGGGTCEEEECSSST
T ss_pred             -CHHHHH----HHHHcCCeeeEcCCCC
Confidence             344444    3678898888888765

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.12  E-value=1.1e-11  Score=117.27  Aligned_cols=155  Identities=13%  Similarity=0.034  Sum_probs=99.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccC----ccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD----YSE  384 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~----~~~  384 (725)
                      +||||||+|.||.+||.+|+++||+|++||+++++.+...+.           +.....     ........+    ...
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~-----------~~~~~~-----~~~~~~~~~~~~~~~~   65 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKA-----------NASAPF-----AGNLKAFETMEAFAAS   65 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH-----------TTTSTT-----GGGEEECSCHHHHHHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc-----------CCcccc-----ccchhhhhhhhHHHHh
Confidence            479999999999999999999999999999999998775431           111000     000111111    134


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhcccC-CCCcEEEEecCCCC---CCCCeeeE
Q 004891          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEI  458 (725)
Q Consensus       385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~-~~~r~ig~h~~~p~---~~~~lvei  458 (725)
                      +..++.++++++....+. .++..+...+.++++++..++..+..  .+.+.+. ..-.++.......+   ..+ ..-+
T Consensus        66 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~~~~a~~g-~~~m  143 (178)
T d1pgja2          66 LKKPRKALILVQAGAATD-STIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKG-PAFF  143 (178)
T ss_dssp             BCSSCEEEECCCCSHHHH-HHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHC-CEEE
T ss_pred             cccceEEEEeecCcchhh-hhhhhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccCCcchhcCC-cEEE
Confidence            577888888888655554 55677788888998887544433322  3333332 33455555433222   111 1223


Q ss_pred             ecCCCCCHHHHHHHHHHHHHcCCeeE
Q 004891          459 VRTERTSAQVILDLMTVGKIIKKVPV  484 (725)
Q Consensus       459 i~~~~t~~e~~~~~~~l~~~lGk~~v  484 (725)
                      +.|   +++++++++++++.+++.+.
T Consensus       144 vgG---~~~~~~~v~pil~~~~~~~~  166 (178)
T d1pgja2         144 PGG---TLSVWEEIRPIVEAAAAKAD  166 (178)
T ss_dssp             EEE---CHHHHHHHHHHHHHHSCBCT
T ss_pred             eeC---CHHHHHHHHHHHHHHhcccc
Confidence            444   68999999999999998765

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.09  E-value=7.6e-10  Score=106.64  Aligned_cols=159  Identities=14%  Similarity=0.120  Sum_probs=96.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHH--------HHHHHHhhHHcCCCCHHHHHHhhcCccccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT--------IEANVRGLVTRGKLTQDKANNALKMLKGVL  380 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~--------i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~  380 (725)
                      +||+|||+|.+|.++|..|+++|++|++||.|++.++...+.        ....+...            ...+++..++
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~------------~~~~~~~~~~   68 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQG------------RQTGRLSGTT   68 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHH------------HHTTCEEEES
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhh------------hcccccccCC
Confidence            589999999999999999999999999999999988765321        11111111            1223566777


Q ss_pred             Cc-ccccCCCEEEEeccCC--------hHHHHHHHHHHHH---hCCCCeEEEecCCCCChHHHh--------cccC--CC
Q 004891          381 DY-SEFKDVDMVIEAVIES--------VPLKQKIFSELEK---ACPPHCILATNTSTIDLNIVG--------EKTS--SQ  438 (725)
Q Consensus       381 ~~-~~l~~aDlVIeavpe~--------~~~k~~v~~~l~~---~~~~~~ii~s~tS~~~~~~l~--------~~~~--~~  438 (725)
                      +. +++.+||+++.|||.+        ......+.+.+..   ...++++|+.. |+.++....        ....  ..
T Consensus        69 ~~~~~i~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~-STv~pGtt~~~~~~~l~~~~~~~~~  147 (202)
T d1mv8a2          69 DFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVR-STVLPGTVNNVVIPLIEDCSGKKAG  147 (202)
T ss_dssp             CHHHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEEC-SCCCTTHHHHTHHHHHHHHHSCCBT
T ss_pred             CHHHHHhhCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeec-cccCCcchhhhhhhhhhcccccccc
Confidence            77 6689999999999863        3334445544443   34566666543 333332111        1111  11


Q ss_pred             CcE-EEEecCCCCCCCCe----------eeEecCCCCCHHHHHHHHHHHHHcCCeeEE
Q 004891          439 DRI-IGAHFFSPAHVMPL----------LEIVRTERTSAQVILDLMTVGKIIKKVPVV  485 (725)
Q Consensus       439 ~r~-ig~h~~~p~~~~~l----------veii~~~~t~~e~~~~~~~l~~~lGk~~v~  485 (725)
                      ..| +..   +|-...+.          .-|+.+.  +++..+.++++++.+....+.
T Consensus       148 ~~~~~~~---~PE~~~~G~a~~d~~~~~~iViG~~--~~~~~~~~~~ly~~i~~~ii~  200 (202)
T d1mv8a2         148 VDFGVGT---NPEFLRESTAIKDYDFPPMTVIGEL--DKQTGDLLEEIYRELDAPIIR  200 (202)
T ss_dssp             TTBEEEE---CCCCCCTTSHHHHHHSCSCEEEEES--SHHHHHHHHHHHTTSSSCEEE
T ss_pred             ccccchh---hhhhhcccchhhhhcCCCeEEEEeC--CHHHHHHHHHHHHhcCCCeEe
Confidence            112 222   22222211          0144443  689999999999998766554

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=99.00  E-value=5.1e-10  Score=105.91  Aligned_cols=103  Identities=16%  Similarity=0.092  Sum_probs=73.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      +||+|||+|.||.++|..|+++|++|++||++++.++...+...    ........     .........+++. +.+++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~e~~~~   72 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGA----IIAEGPGL-----AGTAHPDLLTSDIGLAVKD   72 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTS----EEEESSSC-----CEEECCSEEESCHHHHHTT
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCC----Cchhhhhh-----hhhhhhhhhhhhhHhHhcC
Confidence            68999999999999999999999999999999998776542100    00000000     0000112224444 66899


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEec
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATN  422 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~  422 (725)
                      ||+||.|+|  ......+++++.+++.++++|+..
T Consensus        73 aD~iii~v~--~~~~~~~~~~i~~~l~~~~~iv~~  105 (184)
T d1bg6a2          73 ADVILIVVP--AIHHASIAANIASYISEGQLIILN  105 (184)
T ss_dssp             CSEEEECSC--GGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             CCEEEEEEc--hhHHHHHHHHhhhccCCCCEEEEe
Confidence            999999998  555678999999999999987643

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.99  E-value=6.4e-11  Score=112.79  Aligned_cols=109  Identities=13%  Similarity=0.089  Sum_probs=79.9

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcC-CCCHHHHHHhhcCcccccCc-c
Q 004891          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRG-KLTQDKANNALKMLKGVLDY-S  383 (725)
Q Consensus       306 ~~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g-~~~~~~~~~~~~~i~~~~~~-~  383 (725)
                      +.|+||+|||+|.||+++|..|++.|++|++|+++++.++...+.        .... .+...   .....+.+++++ +
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~--------~~n~~yl~~~---~l~~~i~~t~~l~~   73 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEK--------RENVLFLKGV---QLASNITFTSDVEK   73 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHH--------TBCTTTSTTC---BCCTTEEEESCHHH
T ss_pred             ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhc--------cccccccccc---ccccccccchhhhh
Confidence            467899999999999999999999999999999999887764321        1100 01000   112457778887 6


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHHh-----CCCCeEEEecCCCCC
Q 004891          384 EFKDVDMVIEAVIESVPLKQKIFSELEKA-----CPPHCILATNTSTID  427 (725)
Q Consensus       384 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~-----~~~~~ii~s~tS~~~  427 (725)
                      ++++||+||.|||  ....+.+++++.+.     .+++.++++.+.++.
T Consensus        74 a~~~ad~iiiavP--s~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie  120 (189)
T d1n1ea2          74 AYNGAEIILFVIP--TQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIE  120 (189)
T ss_dssp             HHTTCSCEEECSC--HHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCC
T ss_pred             ccCCCCEEEEcCc--HHHHHHHHHHHHhhhhhhhccCCcEEEEEECCCc
Confidence            6899999999999  88888888887553     345666666666654

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.85  E-value=6.3e-10  Score=105.09  Aligned_cols=100  Identities=15%  Similarity=0.077  Sum_probs=71.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCC--hHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN--SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~--~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      +||+|||+|.||.++|..|+++|++|++|.|+  ++.++...+        ......+.   .......+..+++. +++
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~--------~~~~~~~~---~~~~~~~i~~~~~~~~~~   69 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISA--------GREHPRLG---VKLNGVEIFWPEQLEKCL   69 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHT--------TCCBTTTT---BCCCSEEEECGGGHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhh--------hhhhhhhc---chhccccccccccHHHHH
Confidence            58999999999999999999999999999885  333333211        11100000   00001234455666 568


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEe
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT  421 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s  421 (725)
                      +++|+||.|||  ....+.+++++.++++++.+++.
T Consensus        70 ~~ad~Ii~avp--s~~~~~~~~~l~~~l~~~~ii~~  103 (180)
T d1txga2          70 ENAEVVLLGVS--TDGVLPVMSRILPYLKDQYIVLI  103 (180)
T ss_dssp             TTCSEEEECSC--GGGHHHHHHHHTTTCCSCEEEEC
T ss_pred             hccchhhcccc--hhhhHHHHHhhccccccceeccc
Confidence            99999999999  88889999999999988877653

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.67  E-value=1.1e-08  Score=92.82  Aligned_cols=122  Identities=20%  Similarity=0.281  Sum_probs=78.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      +||+|||+|.+|+++|..++..|+  +++++|++++.++.....+.+..   ....          ......+.++++++
T Consensus         7 ~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~---~~~~----------~~~~~~~~d~~~l~   73 (148)
T d1ldna1           7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGK---VFAP----------KPVDIWHGDYDDCR   73 (148)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHT---TSSS----------SCCEEEECCGGGTT
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCc---cccC----------CCeEEEECCHHHhc
Confidence            699999999999999999999887  89999999987654332222110   0000          01223456779999


Q ss_pred             CCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecCCCCC-hH-HHhcccC-CCCcEEEE
Q 004891          387 DVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTID-LN-IVGEKTS-SQDRIIGA  444 (725)
Q Consensus       387 ~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~-~~-~l~~~~~-~~~r~ig~  444 (725)
                      +||+||.+..              ++..+.+++.++|.++++. ++++..|.... ++ .+.+... .+.|++|+
T Consensus        74 daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~-a~~ivvtNPvd~~t~~~~k~sg~p~~rViG~  147 (148)
T d1ldna1          74 DADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQ-GLFLVATNPVDILTYATWKFSGLPHERVIGS  147 (148)
T ss_dssp             TCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCC-SEEEECSSSHHHHHHHHHHHHTCCGGGEEEC
T ss_pred             cceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCC-ceEEEecCccHHHHHHHHHHHCcChhheecC
Confidence            9999999873              2355667777888888755 44443322211 12 2223333 34677774

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=98.64  E-value=1.7e-08  Score=91.22  Aligned_cols=122  Identities=20%  Similarity=0.203  Sum_probs=77.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l  385 (725)
                      -+||+|||+|.+|.++|..|+..|.  +|+++|++++.++.-...+.+.   ....+           .....+.+++++
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a---~~~~~-----------~~~~~~~d~~~~   70 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDA---QAFTA-----------PKKIYSGEYSDC   70 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGG---GGGSC-----------CCEEEECCGGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhcc---ccccC-----------CceEeeccHHHh
Confidence            4699999999999999999999884  8999999998754322112111   01111           123456688999


Q ss_pred             cCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhcccCC-CCcEEEE
Q 004891          386 KDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGA  444 (725)
Q Consensus       386 ~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~-~~r~ig~  444 (725)
                      ++||+||.++..              +..+.+++..+|.++.+ +++++..|..  .....+...... +.|++|+
T Consensus        71 ~~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p-~aivivvtNPvdv~t~~~~k~sg~p~~rViG~  145 (146)
T d1ez4a1          71 KDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGF-DGIFLVAANPVDILTYATWKFSGFPKERVIGS  145 (146)
T ss_dssp             TTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTC-CSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             ccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCC-CcEEEEeCCccHHHHHHHHHHHCcCccceecC
Confidence            999999998731              24466677777888764 5554433322  111233333343 4577764

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=98.64  E-value=2e-08  Score=90.54  Aligned_cols=121  Identities=19%  Similarity=0.214  Sum_probs=78.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      +||+|||+|.+|.++|..++..|.  +++++|++++.++.....+.......            .....+..++++++++
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~------------~~~~~i~~~~~~~~~~   68 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVG------------LFDTKVTGSNDYADTA   68 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHH------------TCCCEEEEESCGGGGT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchh------------cccceEEecCCHHHhc
Confidence            489999999999999999999985  89999999987654332221111100            0112345567789999


Q ss_pred             CCCEEEEecc--C------------ChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHh----cccC-CCCcEEEE
Q 004891          387 DVDMVIEAVI--E------------SVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG----EKTS-SQDRIIGA  444 (725)
Q Consensus       387 ~aDlVIeavp--e------------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~----~~~~-~~~r~ig~  444 (725)
                      +||+||.+.-  .            +..+.+++.+.+.+++ |+++++..|  .|+..+.    .... .+.|++|+
T Consensus        69 dadvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~-p~aivivvt--NPvd~~~~~~~~~sg~p~~rviG~  142 (142)
T d1guza1          69 NSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVVS--NPLDIMTHVAWVRSGLPKERVIGM  142 (142)
T ss_dssp             TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEECC--SSHHHHHHHHHHHHCSCGGGEEEE
T ss_pred             CCeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccC-CCeEEEEec--CChHHHHHHHHHHhCCChHhEeeC
Confidence            9999999962  1            3445666777888887 555554332  3443332    2223 34677774

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.63  E-value=3.3e-08  Score=88.83  Aligned_cols=123  Identities=17%  Similarity=0.314  Sum_probs=78.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      +||+|||+|.+|+++|..++..|.  +++++|++++.++.-...+.+.......            ...+..++++++++
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~------------~~~i~~~~d~~~~~   68 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDK------------YPKIVGGADYSLLK   68 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTC------------CCEEEEESCGGGGT
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCC------------CCccccCCCHHHhc
Confidence            589999999999999999998886  7999999998865432223222111100            02355567889999


Q ss_pred             CCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecCCCCCh-H-HHhcccC-CCCcEEEE
Q 004891          387 DVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTIDL-N-IVGEKTS-SQDRIIGA  444 (725)
Q Consensus       387 ~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~-~l~~~~~-~~~r~ig~  444 (725)
                      +||+||.+..              .+..+.+++..++.++. |+++++..|....+ + .+.+... .+.|++|+
T Consensus        69 ~adiVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-p~aivivvtNPvD~~t~~~~k~sg~p~~rViG~  142 (142)
T d1ojua1          69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTNPMDVMTYIMWKESGKPRNEVFGM  142 (142)
T ss_dssp             TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECSSSHHHHHHHHHHHSCCCTTSEEEC
T ss_pred             cccEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhC-CCcEEEEecCChHHHHHHHHHHHCCChhcEecC
Confidence            9999998873              13335555556677665 56666554443222 1 1223333 45677774

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=98.61  E-value=3.2e-08  Score=88.91  Aligned_cols=120  Identities=26%  Similarity=0.341  Sum_probs=78.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      +||+|||+|.+|+++|..++..|+  +++++|++++.++.-...+.+...   -.+          ...+..++++++++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~---~~~----------~~~i~~~~~~~~~~   68 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSS---FYP----------TVSIDGSDDPEICR   68 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGG---GST----------TCEEEEESCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccc---cCC----------CceeecCCCHHHhh
Confidence            589999999999999999999987  899999999876432222222100   001          02344567788999


Q ss_pred             CCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHH----hcccC-CCCcEEEE
Q 004891          387 DVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV----GEKTS-SQDRIIGA  444 (725)
Q Consensus       387 ~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l----~~~~~-~~~r~ig~  444 (725)
                      +||+||.+.-              .+..+.+++..+|.++.+. .+++..|  -|+..+    .+... .+.|++|+
T Consensus        69 daDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~-ai~ivvt--NPvDvmt~~~~~~sg~p~~rViG~  142 (143)
T d1llda1          69 DADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPN-AIYMLIT--NPVDIATHVAQKLTGLPENQIFGS  142 (143)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTT-SEEEECC--SSHHHHHHHHHHHHTCCTTSEEEC
T ss_pred             CCcEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCC-eEEEEeC--CchHHHHHHHHHHHCCChhhccCC
Confidence            9999999872              2455677777788888654 4444333  233322    22333 35677774

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.56  E-value=4.9e-09  Score=97.25  Aligned_cols=104  Identities=12%  Similarity=-0.057  Sum_probs=73.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  388 (725)
                      +||+|||+|.||+.+|..|+++|++|++++|+++..+...           ..+.-.     ........+++.+.+.++
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~-----------~~~~~~-----~~~~~~~~~~~~~~~~~~   64 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVN-----------LVETDG-----SIFNESLTANDPDFLATS   64 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEE-----------EECTTS-----CEEEEEEEESCHHHHHTC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhc-----------cccCCc-----cccccccccchhhhhccc
Confidence            5899999999999999999999999999999986533210           001000     000111223334667899


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHH
Q 004891          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI  430 (725)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~  430 (725)
                      |+||.|++  ..-...+++.+.+.+.++++|++...++...+
T Consensus        65 D~iii~vk--a~~~~~~~~~l~~~~~~~~~Iv~~qNG~~~~~  104 (167)
T d1ks9a2          65 DLLLVTLK--AWQVSDAVKSLASTLPVTTPILLIHNGMGTIE  104 (167)
T ss_dssp             SEEEECSC--GGGHHHHHHHHHTTSCTTSCEEEECSSSCTTG
T ss_pred             ceEEEeec--ccchHHHHHhhccccCcccEEeeccCcccHHH
Confidence            99999998  55567888999999999988877666665443

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=98.52  E-value=8.7e-08  Score=86.37  Aligned_cols=121  Identities=19%  Similarity=0.295  Sum_probs=75.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      +||+|||+|.+|+++|..++..|.  +++++|++++.++.....+.+...   ...          ......+.++++++
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~---~~~----------~~~~~~~~d~~~l~   68 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMA---NLE----------AHGNIVINDWAALA   68 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG---GSS----------SCCEEEESCGGGGT
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhcccc---ccC----------CccceeccCHHHhc
Confidence            799999999999999999998875  899999999876543322222111   111          01122356778999


Q ss_pred             CCCEEEEeccC------------------ChHHHHHHHHHHHHhCCCCeEEEecCCCCCh-HH-HhcccC-CCCcEEE
Q 004891          387 DVDMVIEAVIE------------------SVPLKQKIFSELEKACPPHCILATNTSTIDL-NI-VGEKTS-SQDRIIG  443 (725)
Q Consensus       387 ~aDlVIeavpe------------------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~-l~~~~~-~~~r~ig  443 (725)
                      +||+||.+...                  +..+.+++.+.+.+++ |+++++..|....+ +. +.+... .+.|++|
T Consensus        69 ~adiVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~-p~aivivvtNPvD~~t~~~~k~sg~p~~rViG  145 (146)
T d1hyha1          69 DADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPVDVITALFQHVTGFPAHKVIG  145 (146)
T ss_dssp             TCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred             cccEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcC-CCeEEEEecCcHHHHHHHHHHHhCCCccceeC
Confidence            99999998631                  2234555556677765 56666544333221 22 223333 3456766

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=98.50  E-value=7.8e-08  Score=86.42  Aligned_cols=101  Identities=14%  Similarity=0.227  Sum_probs=69.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      +||+|||+|.+|+++|..++..+. ++.++|++++.++.....+.....            .......+..+++++++++
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~------------~~~~~~~i~~~~d~~~~~~   69 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASP------------IEGFDVRVTGTNNYADTAN   69 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHH------------HHTCCCCEEEESCGGGGTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhcccc------------ccCCCCEEEecCcHHHhcC
Confidence            599999999999999999998876 999999998875543322221110            0011123556778899999


Q ss_pred             CCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEec
Q 004891          388 VDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATN  422 (725)
Q Consensus       388 aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~  422 (725)
                      +|+||.+...              +..+.+++..+|.++++ +++++..
T Consensus        70 advvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p-~aivivv  117 (142)
T d1uxja1          70 SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSP-NAVIIMV  117 (142)
T ss_dssp             CSEEEECCSCC---------CHHHHHHHHHHHHHHHGGGCT-TCEEEEC
T ss_pred             CCEEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCC-CceEEEe
Confidence            9999999831              23355666677877755 5555443

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.48  E-value=1.1e-07  Score=85.16  Aligned_cols=118  Identities=19%  Similarity=0.282  Sum_probs=75.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      +||+|||+|.+|.++|..++..+.  +++++|++++.++.....+.+..   .-..           .....++++++++
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~---~~~~-----------~~~~~~~~~~~~~   66 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGT---PFTR-----------RANIYAGDYADLK   66 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHG---GGSC-----------CCEEEECCGGGGT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccc---cccc-----------cccccCCcHHHhc
Confidence            489999999999999999998875  89999999987654332222211   0001           1122355678999


Q ss_pred             CCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHh----cccC-CCCcEEE
Q 004891          387 DVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG----EKTS-SQDRIIG  443 (725)
Q Consensus       387 ~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~----~~~~-~~~r~ig  443 (725)
                      +||+||.+..              .+..+.+++.+.+.++++ +++++..|  .|+..+.    +... .+.|++|
T Consensus        67 ~adivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p-~aivivvt--NPvd~~t~~~~k~sg~p~~rViG  139 (140)
T d1a5za1          67 GSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAP-DSIVIVVT--NPVDVLTYFFLKESGMDPRKVFG  139 (140)
T ss_dssp             TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEECS--SSHHHHHHHHHHHHTCCTTTEEE
T ss_pred             CCCEEEEecccccCCCcchhhhhccccchHHHHHHHHHhcCC-CcEEEEeC--CcHHHHHHHHHHHHCcCccceeC
Confidence            9999999972              144456667777888875 55554333  3333222    2233 3457776

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=98.47  E-value=1.5e-07  Score=85.88  Aligned_cols=102  Identities=19%  Similarity=0.259  Sum_probs=69.3

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l  385 (725)
                      -+||+|||+|.+|+++|..++..|+  +++++|++++.++.-...+.+.   ....+.          ..+....+++++
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~---~~~~~~----------~~~~~~~d~~~~   86 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHG---SLFLQT----------PKIVADKDYSVT   86 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHT---GGGCCC----------SEEEECSSGGGG
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhcc---ccccCC----------CeEEeccchhhc
Confidence            3699999999999999999999998  8999999988764332222211   111110          123345677999


Q ss_pred             cCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891          386 KDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNT  423 (725)
Q Consensus       386 ~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (725)
                      ++||+||.+..              .+..+.+++..+|.+..+ +.+++..|
T Consensus        87 ~~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p-~aiiivvt  137 (160)
T d1i0za1          87 ANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSP-DCIIIVVS  137 (160)
T ss_dssp             TTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TCEEEECS
T ss_pred             ccccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEeC
Confidence            99999998762              134466666777888754 55544333

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=98.44  E-value=1.4e-07  Score=85.86  Aligned_cols=126  Identities=20%  Similarity=0.302  Sum_probs=77.8

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-c
Q 004891          306 RGVRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (725)
Q Consensus       306 ~~~~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (725)
                      +.-+||+|||+|.+|+++|..++..++ +++++|++++.++.....+.+..... ...           ..+..++++ +
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~-~~~-----------~~~~~~~~~~~   72 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVV-DTN-----------VSVRAEYSYEA   72 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHT-TCC-----------CCEEEECSHHH
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhcccc-CCe-----------eEEeccCchhh
Confidence            445799999999999999999998886 89999999987665443333321111 000           123344554 5


Q ss_pred             cccCCCEEEEeccC-------------------ChHHHHHHHHHHHHhCCCCeEEEecCCCCC-hH-HHhcccC-CCCcE
Q 004891          384 EFKDVDMVIEAVIE-------------------SVPLKQKIFSELEKACPPHCILATNTSTID-LN-IVGEKTS-SQDRI  441 (725)
Q Consensus       384 ~l~~aDlVIeavpe-------------------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~-~~-~l~~~~~-~~~r~  441 (725)
                      ++++||+||.+...                   +..+.+++..++.++++. ++++..|.... ++ .+.+... .+.|+
T Consensus        73 ~~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~-aiviivsNPvd~lt~~~~~~sg~p~~rV  151 (154)
T d1pzga1          73 ALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK-TFIIVVTNPLDCMVKVMCEASGVPTNMI  151 (154)
T ss_dssp             HHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTT-CEEEECCSSHHHHHHHHHHHHCCCGGGE
T ss_pred             hhcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCC-cEEEEeCCcHHHHHHHHHHHhCcChhcE
Confidence            78999999998721                   223566677778887654 55544333221 11 2222333 34577


Q ss_pred             EEE
Q 004891          442 IGA  444 (725)
Q Consensus       442 ig~  444 (725)
                      +|+
T Consensus       152 iG~  154 (154)
T d1pzga1         152 CGM  154 (154)
T ss_dssp             EEC
T ss_pred             ecC
Confidence            774

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.35  E-value=2.4e-07  Score=83.25  Aligned_cols=101  Identities=18%  Similarity=0.144  Sum_probs=63.7

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCC--cEEEEeCChHH--HHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcc
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~e~--~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (725)
                      +||+|||+ |.+|.++|..++..|.  ++.++|++++.  ++.....+.+...   ......       .-.+..+.+++
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~---~~~~~~-------~~~~~~~~d~~   70 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALA---GTRSDA-------NIYVESDENLR   70 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHT---TSCCCC-------EEEEEETTCGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhccc---ccccCC-------ccccCCcchHH
Confidence            48999996 9999999999999995  99999998643  2221111221110   001000       00122344678


Q ss_pred             cccCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEE
Q 004891          384 EFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILA  420 (725)
Q Consensus       384 ~l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~  420 (725)
                      ++++||+||.+..              .+..+.+++..++.++++ +.+++
T Consensus        71 ~l~~aDvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~-~~iiv  120 (145)
T d1hyea1          71 IIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICD-TKIFV  120 (145)
T ss_dssp             GGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCC-CEEEE
T ss_pred             HhccceEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccCC-CeEEE
Confidence            9999999999862              134456666677888864 55554

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=98.31  E-value=1.2e-07  Score=85.15  Aligned_cols=118  Identities=22%  Similarity=0.330  Sum_probs=70.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcC-cccccCcccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKM-LKGVLDYSEF  385 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~-i~~~~~~~~l  385 (725)
                      +||+|||+|.+|+++|..++..|.  +++++|++++.++.-...+.        ....       .... ...+.+++++
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~--------~~~~-------~~~~~~~~~~~~~~~   66 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDIN--------HGLP-------FMGQMSLYAGDYSDV   66 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHT--------TSCC-------CTTCEEEC--CGGGG
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeec--------cCcc-------cCCCeeEeeCcHHHh
Confidence            589999999999999999999987  89999999986533211111        1100       0011 1224567889


Q ss_pred             cCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecCCCCChH---H-HhcccC-CCCcEEEE
Q 004891          386 KDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTIDLN---I-VGEKTS-SQDRIIGA  444 (725)
Q Consensus       386 ~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~-l~~~~~-~~~r~ig~  444 (725)
                      ++||+||.+..              .+..+.+++.+++.++.+ +++++..|.  |+.   . +.+... .+.|++|+
T Consensus        67 ~~adivvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p-~ai~ivvtN--Pvdv~t~~~~k~sg~p~~rViG~  141 (142)
T d1y6ja1          67 KDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYN-HGVILVVSN--PVDIITYMIQKWSGLPVGKVIGS  141 (142)
T ss_dssp             TTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCC-SCEEEECSS--SHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             CCCceEEEecccccCcCcchhHHhhHHHHHHHHHHHHhhccCC-CceEEEecC--hHHHHHHHHHHHHCCCccceecC
Confidence            99999999852              134455666677888765 444443322  332   2 223333 34677774

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.30  E-value=4.9e-07  Score=85.93  Aligned_cols=110  Identities=19%  Similarity=0.251  Sum_probs=68.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHH----HHHHHhhHHcCCCCHHHHHHhhcCcccccCc-c
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i----~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (725)
                      +||+|||+|.+|.++|..++ .|++|++||++++.++......    +..++.+.+..          ...+..+++. .
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~----------~~~~~~~~~~~~   69 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSK----------QLSIKATLDSKA   69 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHS----------CCCEEEESCHHH
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhh----------hhhhhccchhhh
Confidence            58999999999999998776 6999999999999987754220    11111111111          1223333333 4


Q ss_pred             cccCCCEEEEeccCCh---------HHHHHHHHHHHHhCCCCeEEEecCCCCChHHH
Q 004891          384 EFKDVDMVIEAVIESV---------PLKQKIFSELEKACPPHCILATNTSTIDLNIV  431 (725)
Q Consensus       384 ~l~~aDlVIeavpe~~---------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l  431 (725)
                      ...++|+++.|+|.+.         .......+.+... .++.+++. .|+.++...
T Consensus        70 ~~~~~~ii~v~vpt~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~iii-~Stv~pgt~  124 (196)
T d1dlja2          70 AYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLSV-NSHATLII-KSTIPIGFI  124 (196)
T ss_dssp             HHHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHHH-CSSCEEEE-CSCCCTTHH
T ss_pred             hhhccccccccCCccccccCCCcceeEEeehhhhhhhc-ccceeEEe-eeecCceee
Confidence            5689999999998533         2334444555554 45555543 445554433

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.30  E-value=8.5e-07  Score=80.03  Aligned_cols=121  Identities=19%  Similarity=0.308  Sum_probs=76.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      .||+|||+|..|+++|..++..+. +++++|++++.++.....+.+....  ..          ....+..+.+++++++
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~--~~----------~~~~v~~~~~~~~~~~   71 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVM--AY----------SNCKVSGSNTYDDLAG   71 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHH--HT----------CCCCEEEECCGGGGTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccc--cC----------CCcEEEecccccccCC
Confidence            599999999999999999888876 8999999998765443333221110  00          0112444566789999


Q ss_pred             CCEEEEeccC-------------------ChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHh----cccC-CCCcEEE
Q 004891          388 VDMVIEAVIE-------------------SVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG----EKTS-SQDRIIG  443 (725)
Q Consensus       388 aDlVIeavpe-------------------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~----~~~~-~~~r~ig  443 (725)
                      ||+||.+...                   +..+.+++..++.+++ |+++++..|.  |+..+.    +... .+.|++|
T Consensus        72 advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~-p~aivivvtN--PvD~~t~~~~~~sg~p~~rViG  148 (150)
T d1t2da1          72 ADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTN--PVDVMVQLLHQHSGVPKNKIIG  148 (150)
T ss_dssp             CSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSS--SHHHHHHHHHHHHCCCGGGEEE
T ss_pred             CcEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcC-CCeEEEEecC--chHHHHHHHHHHHCCCchheec
Confidence            9999998731                   1224555566677776 5566554333  333222    2222 3467776


Q ss_pred             E
Q 004891          444 A  444 (725)
Q Consensus       444 ~  444 (725)
                      +
T Consensus       149 ~  149 (150)
T d1t2da1         149 L  149 (150)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=3.7e-07  Score=83.15  Aligned_cols=102  Identities=18%  Similarity=0.241  Sum_probs=67.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      .||+|||+|.+|.++|..++..|+  +++++|++++.+..-...+.+.   ....+          ...+...+++++++
T Consensus        20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~---~~~~~----------~~~~~~~~d~~~~~   86 (159)
T d2ldxa1          20 CKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHG---SLFLS----------TPKIVFGKDYNVSA   86 (159)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHT---TTTCS----------CCEEEEESSGGGGT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCc---chhcC----------CCeEEeccchhhhc
Confidence            599999999999999999999987  8999999988765432222211   00101          01233456788999


Q ss_pred             CCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891          387 DVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTS  424 (725)
Q Consensus       387 ~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS  424 (725)
                      +||+||.+..              .+..+.+++..++.+.. ++.+++..|.
T Consensus        87 ~adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~-p~~ivivvtN  137 (159)
T d2ldxa1          87 NSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNS-PDCKIIVVTN  137 (159)
T ss_dssp             TEEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHS-TTCEEEECSS
T ss_pred             cccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccC-CCeEEEEeCC
Confidence            9999998872              13344555555566664 5565554433

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=98.11  E-value=6.1e-06  Score=76.15  Aligned_cols=75  Identities=17%  Similarity=0.201  Sum_probs=51.0

Q ss_pred             ceEEEEcCCCCcHHHHH--HHHHC----CCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc
Q 004891          309 RKVAVIGGGLMGSGIAT--AHILN----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~--~l~~~----G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (725)
                      .||+|||+|..|.+.+.  .++..    +.+++++|+++++++.....+.+.....-..            -++..++|.
T Consensus         3 mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~------------~~i~~~td~   70 (171)
T d1obba1           3 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGAD------------LKFEKTMNL   70 (171)
T ss_dssp             CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCC------------CEEEEESCH
T ss_pred             cEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCC------------eEEEEeCCh
Confidence            59999999999976543  34432    4699999999998876544444333221111            245556666


Q ss_pred             -ccccCCCEEEEec
Q 004891          383 -SEFKDVDMVIEAV  395 (725)
Q Consensus       383 -~~l~~aDlVIeav  395 (725)
                       +++++||+||.++
T Consensus        71 ~eaL~dad~Vv~~~   84 (171)
T d1obba1          71 DDVIIDADFVINTA   84 (171)
T ss_dssp             HHHHTTCSEEEECC
T ss_pred             hhcccCCCeEeeec
Confidence             7899999999875

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.97  E-value=1.6e-06  Score=80.91  Aligned_cols=109  Identities=11%  Similarity=0.040  Sum_probs=76.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||.|.+|..+|..+..-|.+|++||+++..                              .......++ +.+++
T Consensus        43 k~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~------------------------------~~~~~~~~l~ell~~   92 (181)
T d1qp8a1          43 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE------------------------------GPWRFTNSLEEALRE   92 (181)
T ss_dssp             CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC------------------------------SSSCCBSCSHHHHTT
T ss_pred             ceEEEeccccccccceeeeeccccccccccccccc------------------------------cceeeeechhhhhhc
Confidence            68999999999999999999999999999997532                              011223445 66899


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhcccC-CCCcEEEEecC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS-SQDRIIGAHFF  447 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~-~~~r~ig~h~~  447 (725)
                      ||+|+.++|-..+.+.-+=.+..+.++++++++..+-+  +....+.+.+. .+..-.++..+
T Consensus        93 sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~~aalDV~  155 (181)
T d1qp8a1          93 ARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVW  155 (181)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCC
T ss_pred             cchhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcccCcEEEEEEecC
Confidence            99999999977665444445677788999998754333  44445555544 23344555543

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.94  E-value=1.5e-05  Score=71.12  Aligned_cols=102  Identities=14%  Similarity=0.139  Sum_probs=64.8

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCC--cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccc
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l  385 (725)
                      .||+|||+ |.+|+++|..++..|+  +++++|+++...+. .       +-..... ..     .....+...+.++++
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a-~-------Dl~~~~~-~~-----~~~~~~~~~~~~~~~   66 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVA-A-------DLSHIET-RA-----TVKGYLGPEQLPDCL   66 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHH-H-------HHTTSSS-SC-----EEEEEESGGGHHHHH
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhh-H-------HHhhhhh-hc-----CCCeEEcCCChHHHh
Confidence            38999995 9999999999999987  79999998754222 1       1110000 00     000122223334778


Q ss_pred             cCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004891          386 KDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTST  425 (725)
Q Consensus       386 ~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~  425 (725)
                      ++||+||.+..              .+..+.+++..++.++. |+++++..|..
T Consensus        67 ~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~-p~~iiivvtNP  119 (144)
T d1mlda1          67 KGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHC-PDAMICIISNP  119 (144)
T ss_dssp             TTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSC
T ss_pred             CCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcC-CCeEEEEecCc
Confidence            99999998863              24456677777888885 55665544443

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=97.88  E-value=4e-05  Score=69.99  Aligned_cols=101  Identities=17%  Similarity=0.092  Sum_probs=64.7

Q ss_pred             ceEEEEcCCCCcHHHH--HHHHHC----CCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc
Q 004891          309 RKVAVIGGGLMGSGIA--TAHILN----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA--~~l~~~----G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (725)
                      .||+|||+|..|.+.+  ..+...    +-+++++|+++++++.....+.......   +         ....+..++|.
T Consensus         4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~---~---------~~~~~~~~~d~   71 (167)
T d1u8xx1           4 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREK---A---------PDIEFAATTDP   71 (167)
T ss_dssp             EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHH---C---------TTSEEEEESCH
T ss_pred             ceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHh---C---------CCcceEecCCh
Confidence            6899999999998744  333222    2389999999998775443333221111   1         01234556665


Q ss_pred             -ccccCCCEEEEeccC----------------------------------ChHHHHHHHHHHHHhCCCCeEEEec
Q 004891          383 -SEFKDVDMVIEAVIE----------------------------------SVPLKQKIFSELEKACPPHCILATN  422 (725)
Q Consensus       383 -~~l~~aDlVIeavpe----------------------------------~~~~k~~v~~~l~~~~~~~~ii~s~  422 (725)
                       +++++||+||.++--                                  +..+..++.+.+.+++ |+++++.-
T Consensus        72 ~eal~~AD~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~-P~A~li~~  145 (167)
T d1u8xx1          72 EEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYS-PDAWMLNY  145 (167)
T ss_dssp             HHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEC
T ss_pred             hhccCCCCEEEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhC-CCeEEEEe
Confidence             789999999999731                                  1345567777888887 66666543

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=97.87  E-value=1.9e-05  Score=70.13  Aligned_cols=100  Identities=19%  Similarity=0.273  Sum_probs=63.2

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHHCCC--cEEEEeCCh--HHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcc
Q 004891          309 RKVAVIG-GGLMGSGIATAHILNNI--YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (725)
Q Consensus       309 ~kIaVIG-~G~mG~~iA~~l~~~G~--~V~~~d~~~--e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (725)
                      .||+||| +|.+|+++|..++..|+  +++++|++.  +.++.....+.+...   -...          ..+ .+.+++
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~---~~~~----------~~i-~~~~~~   66 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIA---YDSN----------TRV-RQGGYE   66 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHT---TTCC----------CEE-EECCGG
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhccc---ccCC----------ceE-eeCCHH
Confidence            4899999 69999999999999987  899999853  222211111221110   0010          112 345678


Q ss_pred             cccCCCEEEEecc-----C---------ChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891          384 EFKDVDMVIEAVI-----E---------SVPLKQKIFSELEKACPPHCILATNT  423 (725)
Q Consensus       384 ~l~~aDlVIeavp-----e---------~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (725)
                      ++++||+||.+.-     .         +..+.+++..+|.++. |+.+++..|
T Consensus        67 ~~~~aDiVvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~-p~~i~ivvt  119 (142)
T d1o6za1          67 DTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHN-DDYISLTTS  119 (142)
T ss_dssp             GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTC-SCCEEEECC
T ss_pred             HhhhcCEEEEecccccccCCchhhHHHHHHHHHHHHHHHHHhcC-CCceEEEec
Confidence            8999999998862     1         3445666666777766 455555443

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.82  E-value=7.3e-06  Score=76.87  Aligned_cols=44  Identities=20%  Similarity=0.219  Sum_probs=39.5

Q ss_pred             ceEEEE-cCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHH
Q 004891          309 RKVAVI-GGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE  352 (725)
Q Consensus       309 ~kIaVI-G~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~  352 (725)
                      +||+|| |+|.||.+||..|+++|++|++|+|++++++...+.+.
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~   45 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYR   45 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            489999 78999999999999999999999999999887766543

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.76  E-value=5.9e-05  Score=69.84  Aligned_cols=134  Identities=16%  Similarity=0.172  Sum_probs=91.1

Q ss_pred             CCHHHHHHHHHHHHHHhcC---CCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEE
Q 004891           28 LAIPIVAGLKDKFEEATSR---DDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (725)
Q Consensus        28 l~~~~~~~l~~~l~~~~~~---~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (725)
                      ++.++..++...|..++.+   +.+. |.|.+.      |+|+..                ...++ +.|..++.||...
T Consensus        22 I~~~~~~~~i~~l~~l~~~~~~~~I~-l~InS~------GG~v~~----------------gl~i~-d~i~~~~~~v~t~   77 (179)
T d2cbya1          22 VNDEIANRLCAQILLLAAEDASKDIS-LYINSP------GGSISA----------------GMAIY-DTMVLAPCDIATY   77 (179)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEE-EEEEEC------CBCHHH----------------HHHHH-HHHHHCSSCEEEE
T ss_pred             ECHHHHHHHHHHHHHHhccCCCCeEE-EEeeCC------CCCHHH----------------HHHHH-HHHHhhccceeee
Confidence            7888888888877655433   2333 334443      344322                22455 6688899999999


Q ss_pred             EcccccchhhHHhhhcC--EEEeeCCceEeCcccccCCCCCchhh----------------chHhhh--hCHHHHHHHHH
Q 004891          105 VEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGT----------------QRLPRL--VGLSKAIEMML  164 (725)
Q Consensus       105 v~G~a~GgG~~lalacD--~~ia~~~a~~~~pe~~~Gl~p~~g~~----------------~~l~r~--vG~~~a~~l~l  164 (725)
                      +.|.|.+.|.-+++++|  .|++.+.++|-+-....|.. +...-                ..+.+.  .......+++-
T Consensus        78 ~~G~aaS~a~~il~ag~k~~R~~~~~s~~miH~~~~~~~-G~~~~i~~~~~~l~~~~~~i~~i~a~~tg~~~~~i~~~~~  156 (179)
T d2cbya1          78 AMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVT-GSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSD  156 (179)
T ss_dssp             EEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC-----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHcCCCCceEECCchHhhcCCCchhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhc
Confidence            99999999999999999  89999999999887765542 11110                011111  23345556677


Q ss_pred             cCCCCCHHHHHHcCCcceecCc
Q 004891          165 LSKSITSEEGWKLGLIDAVVTS  186 (725)
Q Consensus       165 ~g~~~~a~eA~~~Glv~~vv~~  186 (725)
                      ....++|+||+++||||+|+.+
T Consensus       157 ~d~~l~a~EA~~~GliDeIi~~  178 (179)
T d2cbya1         157 RDRWFTAAEALEYGFVDHIITR  178 (179)
T ss_dssp             TTCEEEHHHHHHHTSCSEECSC
T ss_pred             CCceecHHHHHHcCCCcEEecC
Confidence            8889999999999999999854

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.75  E-value=6.1e-05  Score=69.06  Aligned_cols=123  Identities=18%  Similarity=0.219  Sum_probs=68.3

Q ss_pred             ceEEEEcCCCCcHH--HHHHHHHC----CCcEEEEeCChHHHHH-HHHHH-HHHHHhhHHcCCCCHHHHHHhhcCccccc
Q 004891          309 RKVAVIGGGLMGSG--IATAHILN----NIYVVLKEVNSEYLLK-GIKTI-EANVRGLVTRGKLTQDKANNALKMLKGVL  380 (725)
Q Consensus       309 ~kIaVIG~G~mG~~--iA~~l~~~----G~~V~~~d~~~e~~~~-~~~~i-~~~l~~~~~~g~~~~~~~~~~~~~i~~~~  380 (725)
                      .||+|||+|..|.+  ++..+...    +-+++++|++++..+. +.+.. .....   ..+.         .-.+..++
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~---~~~~---------~~~~~~~t   69 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVE---KAGV---------PIEIHLTL   69 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHH---HTTC---------CCEEEEES
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHH---hcCC---------CceeeecC
Confidence            58999999998854  33344432    2389999999865221 11111 11111   1110         01344455


Q ss_pred             Cc-ccccCCCEEEEeccC----------------------------------ChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004891          381 DY-SEFKDVDMVIEAVIE----------------------------------SVPLKQKIFSELEKACPPHCILATNTST  425 (725)
Q Consensus       381 ~~-~~l~~aDlVIeavpe----------------------------------~~~~k~~v~~~l~~~~~~~~ii~s~tS~  425 (725)
                      |. +++++||+||.++.-                                  +..+.+++.+++.+++ |+++++..|..
T Consensus        70 d~~~al~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~-pda~~i~vtNP  148 (169)
T d1s6ya1          70 DRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELC-PDAWLINFTNP  148 (169)
T ss_dssp             CHHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSS
T ss_pred             CchhhcCCCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcC-CCeEEEEeCCh
Confidence            55 778999999999841                                  2334567778888886 66666543332


Q ss_pred             CCh-HHHhcccCCCCcEEEE
Q 004891          426 IDL-NIVGEKTSSQDRIIGA  444 (725)
Q Consensus       426 ~~~-~~l~~~~~~~~r~ig~  444 (725)
                      ..+ +........+.|++|+
T Consensus       149 vdv~t~~~~k~~p~~kviGl  168 (169)
T d1s6ya1         149 AGMVTEAVLRYTKQEKVVGL  168 (169)
T ss_dssp             HHHHHHHHHHHCCCCCEEEC
T ss_pred             HHHHHHHHHHHCCCCCEEee
Confidence            221 2222222234577774

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.66  E-value=0.00017  Score=67.37  Aligned_cols=136  Identities=15%  Similarity=0.198  Sum_probs=91.9

Q ss_pred             CCCHHHHHHHHHHHHHHhcCC---CceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEE
Q 004891           27 ALAIPIVAGLKDKFEEATSRD---DVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA  103 (725)
Q Consensus        27 al~~~~~~~l~~~l~~~~~~~---~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia  103 (725)
                      .++.++...+...|..++.++   ++. +.|.+.|      +|+..                ...++ +.|..++.||..
T Consensus        32 ~I~~~~~~~~~~~l~~l~~~~~~~~I~-l~InS~G------G~v~~----------------glai~-d~i~~~~~~v~t   87 (192)
T d1y7oa1          32 PVEDNMANSVIAQLLFLDAQDSTKDIY-LYVNTPG------GSVSA----------------GLAIV-DTMNFIKADVQT   87 (192)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCTTSCEE-EEEEECC------BCHHH----------------HHHHH-HHHHHSSSCEEE
T ss_pred             EEchHHHHHHHHHHHHhhhhcccCcee-eeecCCC------CCHHH----------------HHHHH-HHHHhcCcceEE
Confidence            478888888888887665332   333 3445544      33221                23455 668889999999


Q ss_pred             EEcccccchhhHHhhh--cCEEEeeCCceEeCcccccCCCCCchhhc------hH-----------hhh--hCHHHHHHH
Q 004891          104 AVEGLALGGGLELAMG--CHARIAAPKTQLGLPELTLGVIPGFGGTQ------RL-----------PRL--VGLSKAIEM  162 (725)
Q Consensus       104 av~G~a~GgG~~lala--cD~~ia~~~a~~~~pe~~~Gl~p~~g~~~------~l-----------~r~--vG~~~a~~l  162 (725)
                      .+.|.|.+.|.-+++|  ||.|++.++++|-+-....|.........      .+           ...  .......+.
T Consensus        88 ~~~G~aaS~as~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~~~~~~~~~~el~~~~~~i~~i~~~~tg~~~~~i~~~  167 (192)
T d1y7oa1          88 IVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHAD  167 (192)
T ss_dssp             EEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             EeccccCCccceeeeecCCCccccchHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHh
Confidence            9999999999888775  68999999999999888766532211110      01           111  234555667


Q ss_pred             HHcCCCCCHHHHHHcCCcceecCc
Q 004891          163 MLLSKSITSEEGWKLGLIDAVVTS  186 (725)
Q Consensus       163 ~l~g~~~~a~eA~~~Glv~~vv~~  186 (725)
                      +-....++|+||++.||||+|+..
T Consensus       168 ~~rd~~lsa~EAleyGliD~Ii~~  191 (192)
T d1y7oa1         168 AERDNWMSAQETLEYGFIDEIMAN  191 (192)
T ss_dssp             HHSCCCBCHHHHHHHTSCSEECCC
T ss_pred             hcCCceecHHHHHHcCCCcEEecC
Confidence            778889999999999999999853

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.66  E-value=9e-05  Score=67.39  Aligned_cols=73  Identities=19%  Similarity=0.104  Sum_probs=47.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH--C----CCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccC-
Q 004891          309 RKVAVIGGGLMGSGIATAHIL--N----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD-  381 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~--~----G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~-  381 (725)
                      +||+|||+|..|.+.+.....  .    +-+++++|+++++++...+ +.+.   .....           ..+..+++ 
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d-~~~~---~~~~~-----------~~~~~t~~~   65 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVD-FVKR---LVKDR-----------FKVLISDTF   65 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHH-HHHH---HHTTS-----------SEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHH-HHHh---hhccC-----------ceEEEecCc
Confidence            489999999999888854332  2    3589999999998764332 2111   11111           12333333 


Q ss_pred             cccccCCCEEEEecc
Q 004891          382 YSEFKDVDMVIEAVI  396 (725)
Q Consensus       382 ~~~l~~aDlVIeavp  396 (725)
                      ++++++||+||.+.-
T Consensus        66 ~~~l~~aDvVVita~   80 (162)
T d1up7a1          66 EGAVVDAKYVIFQFR   80 (162)
T ss_dssp             HHHHTTCSEEEECCC
T ss_pred             ccccCCCCEEEEecc
Confidence            488999999999873

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.65  E-value=5.1e-05  Score=66.63  Aligned_cols=95  Identities=17%  Similarity=0.126  Sum_probs=61.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc--cccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--SEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~l~  386 (725)
                      |++.|+|+|.+|..+|..|.+.|++|+++|.|++.++.+.+           .+..      ...+..+-...+  ..+.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~-----------~~~~------~~~gd~~~~~~l~~a~i~   63 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS-----------YATH------AVIANATEENELLSLGIR   63 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT-----------TCSE------EEECCTTCTTHHHHHTGG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH-----------hCCc------ceeeecccchhhhccCCc
Confidence            47899999999999999999999999999999999876531           1210      000000000011  2368


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEe
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT  421 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s  421 (725)
                      +||.||.+++++.... .+...+.+..+...|++-
T Consensus        64 ~a~~vi~~~~~~~~~~-~~~~~~~~~~~~~~iiar   97 (134)
T d2hmva1          64 NFEYVIVAIGANIQAS-TLTTLLLKELDIPNIWVK   97 (134)
T ss_dssp             GCSEEEECCCSCHHHH-HHHHHHHHHTTCSEEEEE
T ss_pred             cccEEEEEcCchHHhH-HHHHHHHHHcCCCcEEee
Confidence            8999999998765542 223344455555556543

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

Probab=97.65  E-value=5.7e-05  Score=70.29  Aligned_cols=133  Identities=14%  Similarity=0.142  Sum_probs=92.4

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCce--EEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEE
Q 004891           28 LAIPIVAGLKDKFEEATSRDDVK--AIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (725)
Q Consensus        28 l~~~~~~~l~~~l~~~~~~~~v~--~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav  105 (725)
                      ++.++...+...+..++.++..+  .|.|.+.|      +|+.                ....++ +.|..++.|+...+
T Consensus        25 I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~G------G~v~----------------~g~~i~-d~i~~~~~~v~tv~   81 (183)
T d1yg6a1          25 VEDHMANLIVAQMLFLEAENPEKDIYLYINSPG------GVIT----------------AGMSIY-DTMQFIKPDVSTIC   81 (183)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC------BCHH----------------HHHHHH-HHHHHSSSCEEEEE
T ss_pred             ECHHHHHHHHHHHHHhhhhccCCceEEEEeCCC------ccHH----------------HHHHHH-HHHHhCCCCEEEEE
Confidence            78888889888888776433222  23334443      3432                123455 67889999999999


Q ss_pred             cccccchhhHHhhhcC--EEEeeCCceEeCcccccCCCCCchhhchH------------------hhh--hCHHHHHHHH
Q 004891          106 EGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQRL------------------PRL--VGLSKAIEMM  163 (725)
Q Consensus       106 ~G~a~GgG~~lalacD--~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l------------------~r~--vG~~~a~~l~  163 (725)
                      .|.|.+.|.-+.++||  .|++.+.++|-+-+...|..   |-..-+                  .+.  .......+++
T Consensus        82 ~G~aaS~a~~I~~ag~~~~R~~~~ns~~miH~~~~~~~---G~~~~i~~~~~~~~~~~~~~~~~~~~~tg~~~e~i~~~~  158 (183)
T d1yg6a1          82 MGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQ---GQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDT  158 (183)
T ss_dssp             EEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEE---EEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHT
T ss_pred             EEEeHHHHHHHHHcCCCCceeeCCCceEEecccccccc---cCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh
Confidence            9999999999999998  79999999998877765532   211111                  111  1334444555


Q ss_pred             HcCCCCCHHHHHHcCCcceecCc
Q 004891          164 LLSKSITSEEGWKLGLIDAVVTS  186 (725)
Q Consensus       164 l~g~~~~a~eA~~~Glv~~vv~~  186 (725)
                      -.-..++|+||++.|+||+|+..
T Consensus       159 ~~d~~lta~EAl~~GliD~Ii~~  181 (183)
T d1yg6a1         159 ERDRFLSAPEAVEYGLVDSILTH  181 (183)
T ss_dssp             SSCEEEEHHHHHHHTSSSEECCC
T ss_pred             ccCccccHHHHHHcCCCcEEecc
Confidence            45566799999999999999864

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.65  E-value=1.9e-05  Score=70.47  Aligned_cols=101  Identities=17%  Similarity=0.231  Sum_probs=62.4

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHH-C--CCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccc
Q 004891          309 RKVAVIG-GGLMGSGIATAHIL-N--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (725)
Q Consensus       309 ~kIaVIG-~G~mG~~iA~~l~~-~--G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (725)
                      +||+||| +|.+|+++|..|+. .  +.++.++|+++.....+. .+.+      ..-..       ....+..++++++
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~-Dl~h------~~~~~-------~~~~~~~~~~~~~   66 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAV-DLSH------IPTAV-------KIKGFSGEDATPA   66 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHH-HHHT------SCSSC-------EEEEECSSCCHHH
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHH-HHHC------Ccccc-------CCcEEEcCCCccc
Confidence            4899999 59999999998864 3  459999999754322211 1110      00000       0012233456688


Q ss_pred             ccCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891          385 FKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTS  424 (725)
Q Consensus       385 l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS  424 (725)
                      +++||+||.+.-              .+..+.+++.+++.++.+. ++++..|.
T Consensus        67 ~~~aDvvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~-aivivvtN  119 (145)
T d2cmda1          67 LEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPK-ACIGIITN  119 (145)
T ss_dssp             HTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTT-SEEEECSS
T ss_pred             cCCCCEEEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCC-cEEEEccC
Confidence            999999999872              1444666777788888755 44444433

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=97.64  E-value=1.2e-05  Score=75.77  Aligned_cols=111  Identities=16%  Similarity=0.096  Sum_probs=74.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|||||.|.+|..+|..+..-|.+|+.||+.......             ..             .. ...++ +.+++
T Consensus        44 k~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~-------------~~-------------~~-~~~~l~~~l~~   96 (197)
T d1j4aa1          44 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELE-------------KK-------------GY-YVDSLDDLYKQ   96 (197)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH-------------HT-------------TC-BCSCHHHHHHH
T ss_pred             CeEEEecccccchhHHHhHhhhcccccccCcccccccc-------------cc-------------ee-eeccccccccc
Confidence            68999999999999999999999999999987543111             00             11 12334 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC-C--CChHHHhcccCC-CCcEEEEecC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTSS-QDRIIGAHFF  447 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~~-~~r~ig~h~~  447 (725)
                      ||+|+.++|-..+.+.-+=.+..+.++++++++ |+| +  +....+.+.+.. .-.-.++..|
T Consensus        97 sDii~~~~plt~~T~~li~~~~l~~mk~~a~lI-N~sRG~ivde~aL~~aL~~~~i~~a~lDV~  159 (197)
T d1j4aa1          97 ADVISLHVPDVPANVHMINDESIAKMKQDVVIV-NVSRGPLVDTDAVIRGLDSGKIFGYAMDVY  159 (197)
T ss_dssp             CSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEE-ECSCGGGBCHHHHHHHHHHTSEEEEEESCC
T ss_pred             cccccccCCccccccccccHHHHhhhCCccEEE-ecCchhhhhhHHHHHHHhcccchheeeecc
Confidence            999999999766654444356667789999886 454 2  333445454432 2223445544

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.63  E-value=0.00018  Score=62.82  Aligned_cols=97  Identities=23%  Similarity=0.230  Sum_probs=61.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  388 (725)
                      +||.|+|+|.+|..+|..|.+.|++|+++|.|++.++++.+.+    ...+=.|..+..+.          -....++++
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~----~~~vi~Gd~~~~~~----------l~~~~i~~a   66 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI----DALVINGDCTKIKT----------LEDAGIEDA   66 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----SSEEEESCTTSHHH----------HHHTTTTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh----hhhhccCcccchhh----------hhhcChhhh
Confidence            5899999999999999999999999999999999987754210    00000111110000          000336889


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEe
Q 004891          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILAT  421 (725)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s  421 (725)
                      |.++.+.+++..  ..+...+.+...+..+++.
T Consensus        67 ~~vv~~t~~d~~--N~~~~~~~k~~~~~~iI~~   97 (132)
T d1lssa_          67 DMYIAVTGKEEV--NLMSSLLAKSYGINKTIAR   97 (132)
T ss_dssp             SEEEECCSCHHH--HHHHHHHHHHTTCCCEEEE
T ss_pred             hhhcccCCcHHH--HHHHHHHHHHcCCceEEEE
Confidence            999988775432  2233344455666666654

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=97.58  E-value=1.2e-05  Score=75.45  Aligned_cols=102  Identities=16%  Similarity=0.066  Sum_probs=70.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|||||+|.+|..+|..+..-|.+|..||+....-...            .             ..+....++ +.++.
T Consensus        50 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~------------~-------------~~~~~~~~l~~ll~~  104 (193)
T d1mx3a1          50 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVER------------A-------------LGLQRVSTLQDLLFH  104 (193)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHHH------------H-------------HTCEECSSHHHHHHH
T ss_pred             ceEEEeccccccccceeeeeccccceeeccCcccccchh------------h-------------hccccccchhhcccc
Confidence            689999999999999999999999999999864431110            0             012223445 55789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC-C--CChHHHhcccC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTS  436 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~  436 (725)
                      ||+|+.++|-..+.+.-+=.+..+.++++++++ |+| +  +....+.+.+.
T Consensus       105 sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lI-N~sRG~ivde~aL~~aL~  155 (193)
T d1mx3a1         105 SDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLV-NTARGGLVDEKALAQALK  155 (193)
T ss_dssp             CSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEE-ECSCTTSBCHHHHHHHHH
T ss_pred             CCEEEEeecccccchhhhhHHHHhccCCCCeEE-ecCCceEEcHHHHHHHHH
Confidence            999999999665554433356667789999886 444 3  33345555543

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.57  E-value=2.8e-05  Score=71.71  Aligned_cols=39  Identities=18%  Similarity=0.123  Sum_probs=36.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~  347 (725)
                      ++|.|||+|.||..+|..|++.|++|+++||+.++++..
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l   41 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKL   41 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHH
Confidence            789999999999999999999999999999999987764

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=5.7e-05  Score=67.95  Aligned_cols=88  Identities=13%  Similarity=0.064  Sum_probs=62.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  388 (725)
                      ++|+|+|.|.+|.++|..+...|.+|+++|++|-..-++.                        +.......-.+++..+
T Consensus        25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~------------------------~dG~~v~~~~~a~~~a   80 (163)
T d1li4a1          25 KVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAA------------------------MEGYEVTTMDEACQEG   80 (163)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH------------------------HTTCEECCHHHHTTTC
T ss_pred             CEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhh------------------------cCceEeeehhhhhhhc
Confidence            6799999999999999999999999999999985532221                        1122222223678899


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (725)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  424 (725)
                      |+||.|....-.+..+    -.+.+++++|++..++
T Consensus        81 divvtaTGn~~vI~~e----h~~~MKdgaIL~N~Gh  112 (163)
T d1li4a1          81 NIFVTTTGCIDIILGR----HFEQMKDDAIVCNIGH  112 (163)
T ss_dssp             SEEEECSSCSCSBCHH----HHTTCCTTEEEEECSS
T ss_pred             cEEEecCCCccchhHH----HHHhccCCeEEEEecc
Confidence            9999887643333333    3445789999976444

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=97.45  E-value=5.1e-05  Score=70.98  Aligned_cols=115  Identities=12%  Similarity=0.047  Sum_probs=76.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      -++|+|||.|.+|+.+|..+..-|.+|..||+..........                        .......++ +.++
T Consensus        47 g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~------------------------~~~~~~~~l~~ll~  102 (191)
T d1gdha1          47 NKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEAS------------------------YQATFHDSLDSLLS  102 (191)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHH------------------------HTCEECSSHHHHHH
T ss_pred             ccceEEeecccchHHHHHHHHhhccccccccccccccchhhc------------------------ccccccCCHHHHHh
Confidence            378999999999999999999999999999986543221100                        011223344 5678


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC-C--CChHHHhcccCC-CCcEEEEecC
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTSS-QDRIIGAHFF  447 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~~-~~r~ig~h~~  447 (725)
                      .||+|+.++|-..+.+.-+=++..+.++++++++ |+| +  +.-..+.+.+.. .-...++..|
T Consensus       103 ~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lI-N~sRG~ivde~aL~~aL~~g~i~~a~lDV~  166 (191)
T d1gdha1         103 VSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVV-NTARGDLVDNELVVAALEAGRLAYAGFDVF  166 (191)
T ss_dssp             HCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEE-ECSCGGGBCHHHHHHHHHHTSEEEEEESCC
T ss_pred             hCCeEEecCCCCchHhheecHHHhhCcCCccEEE-ecCCccchhhHHHHHHHHcCCceEEEEECC
Confidence            9999999999766654444456777889999886 555 2  333455554432 2233455544

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.45  E-value=0.00057  Score=63.56  Aligned_cols=132  Identities=16%  Similarity=0.181  Sum_probs=92.8

Q ss_pred             CCHHHHHHHHHHHHHHhcC--CCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEE
Q 004891           28 LAIPIVAGLKDKFEEATSR--DDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (725)
Q Consensus        28 l~~~~~~~l~~~l~~~~~~--~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav  105 (725)
                      ++.++..++...|..++..  +++. |.|.+.|      +|+..                ...++ +.|..++.||...+
T Consensus        27 Id~~~~~~~i~~l~~l~~~~~~~I~-l~INS~G------G~v~~----------------g~ai~-d~i~~~~~~v~tv~   82 (190)
T d2f6ia1          27 INKKTADELISQLLYLDNINHNDIK-IYINSPG------GSINE----------------GLAIL-DIFNYIKSDIQTIS   82 (190)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCCSCEE-EEEEECC------BCHHH----------------HHHHH-HHHHHSSSCEEEEE
T ss_pred             eCHHHHHHHHHHHHHHhccCCCCeE-EEEeCch------hhhhH----------------HHHHH-HHHHhhCCceEEEE
Confidence            7888888888888777543  3343 3334433      44321                22455 66888999999999


Q ss_pred             cccccchhhHHhhhcC--EEEeeCCceEeCcccccCCCCCchhhc------------------hHhhhhC--HHHHHHHH
Q 004891          106 EGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQ------------------RLPRLVG--LSKAIEMM  163 (725)
Q Consensus       106 ~G~a~GgG~~lalacD--~~ia~~~a~~~~pe~~~Gl~p~~g~~~------------------~l~r~vG--~~~a~~l~  163 (725)
                      .|.|.+.|.-+++++|  .|++.+.++|-+.....|..   |...                  .+.+.-|  .....+++
T Consensus        83 ~G~aaS~a~~i~~aG~kg~R~~~pns~imiH~~s~~~~---G~~~di~~~~~~l~~~~~~~~~i~a~~tg~~~~~i~~~~  159 (190)
T d2f6ia1          83 FGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAF---GHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDS  159 (190)
T ss_dssp             EEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC-----------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             eccccchhHHHHHhCCCCccccCCCcEEEEcccccccC---CcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhc
Confidence            9999999999999988  69999999999988877653   2211                  1122222  23444555


Q ss_pred             HcCCCCCHHHHHHcCCcceecCc
Q 004891          164 LLSKSITSEEGWKLGLIDAVVTS  186 (725)
Q Consensus       164 l~g~~~~a~eA~~~Glv~~vv~~  186 (725)
                      -.-..++|+||++.||||+|+..
T Consensus       160 ~~d~~l~a~EAl~~GliD~Ii~~  182 (190)
T d2f6ia1         160 DRDYYMNALEAKQYGIIDEVIET  182 (190)
T ss_dssp             HTTCEECHHHHHHHTSCSEECCC
T ss_pred             cCCeeecHHHHHHcCCCcEEccc
Confidence            56677999999999999999853

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.44  E-value=0.0001  Score=66.82  Aligned_cols=94  Identities=15%  Similarity=0.185  Sum_probs=63.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      -++|.|||+|.||..++.+|...|+ +|++++|+.++++...+.+          +           ......+++ +.+
T Consensus        24 ~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~----------~-----------~~~~~~~~~~~~l   82 (159)
T d1gpja2          24 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL----------G-----------GEAVRFDELVDHL   82 (159)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH----------T-----------CEECCGGGHHHHH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhh----------h-----------cccccchhHHHHh
Confidence            3689999999999999999999998 6999999988876543211          1           011112233 567


Q ss_pred             cCCCEEEEeccCC-hHHHHHHHHHHHHhCC--CCeEEEec
Q 004891          386 KDVDMVIEAVIES-VPLKQKIFSELEKACP--PHCILATN  422 (725)
Q Consensus       386 ~~aDlVIeavpe~-~~~k~~v~~~l~~~~~--~~~ii~s~  422 (725)
                      .++|+||.|++-+ .-+..+.++...+.-+  ...++++-
T Consensus        83 ~~~Divi~atss~~~ii~~~~i~~~~~~r~~~~~~~iiDl  122 (159)
T d1gpja2          83 ARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDI  122 (159)
T ss_dssp             HTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred             ccCCEEEEecCCCCccccHhhhHHHHHhcccCCCeEEEee
Confidence            8999999999633 2345566665444332  23466664

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=97.37  E-value=3.7e-05  Score=71.98  Aligned_cols=115  Identities=12%  Similarity=0.003  Sum_probs=76.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      -++|+|||.|.+|..+|..+..-|.+|..||+....-....                       . ..+....++ +.++
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~-----------------------~-~~~~~~~~l~~~l~   99 (188)
T d2naca1          44 AMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEK-----------------------E-LNLTWHATREDMYP   99 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHH-----------------------H-HTCEECSSHHHHGG
T ss_pred             ccceeeccccccchhhhhhhhccCceEEEEeeccccccccc-----------------------c-ccccccCCHHHHHH
Confidence            36899999999999999999999999999998642211110                       0 012223344 6789


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC-C--CChHHHhcccCCC-CcEEEEecC
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTSSQ-DRIIGAHFF  447 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~~~-~r~ig~h~~  447 (725)
                      +||+|+.++|-..+.+.-+=.+..+.++++++++ |+| +  +....+.+.+... -.-.++..|
T Consensus       100 ~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~ivd~~aL~~aL~~g~i~ga~lDV~  163 (188)
T d2naca1         100 VCDVVTLNCPLHPETEHMINDETLKLFKRGAYIV-NTARGKLCDRDAVARALESGRLAGYAGDVW  163 (188)
T ss_dssp             GCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEE-ECSCGGGBCHHHHHHHHHTTSEEEEEESCC
T ss_pred             hccchhhcccccccchhhhHHHHHHhCCCCCEEE-ecCchhhhhHHHHHHHHhCCCceeEEEeCC
Confidence            9999999999766654444466777889999886 454 2  4444555555432 222455443

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=97.35  E-value=2e-05  Score=74.42  Aligned_cols=99  Identities=17%  Similarity=0.082  Sum_probs=69.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|+|||.|.+|..+|..+..-|.+|++||+.......                           .... ..++ +.++.
T Consensus        46 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~---------------------------~~~~-~~~l~~l~~~   97 (199)
T d1dxya1          46 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDH---------------------------PDFD-YVSLEDLFKQ   97 (199)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSCC---------------------------TTCE-ECCHHHHHHH
T ss_pred             eeeeeeecccccccccccccccceeeeccCCccchhhh---------------------------cchh-HHHHHHHHHh
Confidence            68999999999999999999999999999987532000                           0111 1233 45688


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC-C--CChHHHhcccC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTS  436 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~  436 (725)
                      ||+|+.++|-..+.+.-+=++..+.++++++++ |++ +  +....+.+.+.
T Consensus        98 ~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lI-N~aRG~vvde~aL~~aL~  148 (199)
T d1dxya1          98 SDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVI-NTARPNLIDTQAMLSNLK  148 (199)
T ss_dssp             CSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEE-ECSCTTSBCHHHHHHHHH
T ss_pred             cccceeeecccccccccccHHHhhccCCceEEE-ecccHhhhhhHHHHHHHh
Confidence            999999999776654434356667789999886 454 3  33345555543

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.31  E-value=5.3e-05  Score=70.49  Aligned_cols=113  Identities=18%  Similarity=0.180  Sum_probs=76.3

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      -++|+|||.|.+|..+|..+..-|.+|+.||+.........                         ..+. ..++ +.++
T Consensus        44 ~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~-------------------------~~~~-~~~l~ell~   97 (184)
T d1ygya1          44 GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQ-------------------------LGIE-LLSLDDLLA   97 (184)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHH-------------------------HTCE-ECCHHHHHH
T ss_pred             ceeeeeccccchhHHHHHHhhhccceEEeecCCCChhHHhh-------------------------cCce-eccHHHHHh
Confidence            36899999999999999999999999999998754422110                         0112 1233 5678


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC-C--CChHHHhcccCCC-CcEEEEecC
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTSSQ-DRIIGAHFF  447 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~~~-~r~ig~h~~  447 (725)
                      .||+|+.++|-..+.+.-+=++....++++++++ |+| +  +.-..+.+.+... -...++..|
T Consensus        98 ~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lI-N~sRG~iVde~aL~~aL~~~~i~~a~lDV~  161 (184)
T d1ygya1          98 RADFISVHLPKTPETAGLIDKEALAKTKPGVIIV-NAARGGLVDEAALADAITGGHVRAAGLDVF  161 (184)
T ss_dssp             HCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEE-ECSCTTSBCHHHHHHHHHTSSEEEEEESSC
T ss_pred             hCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEE-EecchhhhhhHHHHHHHhcCcEeEEEEeCC
Confidence            9999999999766654433356777889999886 454 3  3344555555433 233455544

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=97.27  E-value=0.00091  Score=62.23  Aligned_cols=133  Identities=15%  Similarity=0.204  Sum_probs=92.5

Q ss_pred             CCCHHHHHHHHHHHHHHhcC---CCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEE
Q 004891           27 ALAIPIVAGLKDKFEEATSR---DDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA  103 (725)
Q Consensus        27 al~~~~~~~l~~~l~~~~~~---~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia  103 (725)
                      .++.++...+...+..++..   .++.. .|.+.|+      |+.                ....++ +.|..++.||..
T Consensus        34 ~I~~~~~~~~i~~l~~l~~~~~~~~I~l-~InS~GG------~v~----------------~g~~i~-d~i~~~~~~V~t   89 (193)
T d1tg6a1          34 PIDDSVASLVIAQLLFLQSESNKKPIHM-YINSPGG------VVT----------------AGLAIY-DTMQYILNPICT   89 (193)
T ss_dssp             SBCHHHHHHHHHHHHHHHHHCSSSCEEE-EEEECCB------CHH----------------HHHHHH-HHHHHSCSCEEE
T ss_pred             EEchHHHHHHHHHHHHhcccCCCcEEEE-EeecCcc------cHH----------------HHHHHH-HHHHhhcCceEE
Confidence            47888888888777766633   23433 3355443      221                122455 678889999999


Q ss_pred             EEcccccchhhHHhhhcC--EEEeeCCceEeCcccccCCCCCchhhch-----------------Hhhh--hCHHHHHHH
Q 004891          104 AVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQR-----------------LPRL--VGLSKAIEM  162 (725)
Q Consensus       104 av~G~a~GgG~~lalacD--~~ia~~~a~~~~pe~~~Gl~p~~g~~~~-----------------l~r~--vG~~~a~~l  162 (725)
                      .+.|.|.+.|.-+.++||  .|++.++|+|-+-....|.. + -....                 +...  .......++
T Consensus        90 v~~G~aaS~a~~il~aG~~g~R~~~pns~~miHq~~~~~~-G-~~~di~~~~~el~~~~~~i~~i~a~~Tg~~~~~i~~~  167 (193)
T d1tg6a1          90 WCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGAR-G-QATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESA  167 (193)
T ss_dssp             EEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCC-S-SHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             EEccchHHHHHHHhhcCccCccccCcccHHHhcCCccCCC-c-CHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            999999999999999999  59999999999988776642 1 11111                 1111  133444555


Q ss_pred             HHcCCCCCHHHHHHcCCcceecC
Q 004891          163 MLLSKSITSEEGWKLGLIDAVVT  185 (725)
Q Consensus       163 ~l~g~~~~a~eA~~~Glv~~vv~  185 (725)
                      +-.-..++|+||++.||||+|+.
T Consensus       168 ~~rD~~lta~EAl~yGliD~Ii~  190 (193)
T d1tg6a1         168 MERDRYMSPMEAQEFGILDKVLV  190 (193)
T ss_dssp             HSSCEEECHHHHHHHTSCSEECS
T ss_pred             hccCccCCHHHHHHcCCCCEEcc
Confidence            55556699999999999999983

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=4.5e-05  Score=71.36  Aligned_cols=112  Identities=16%  Similarity=0.192  Sum_probs=75.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cccc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  386 (725)
                      -++|+|||.|.+|..+|..+...|.+|+.||+......                            .......++ +.++
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~----------------------------~~~~~~~~l~ell~   95 (188)
T d1sc6a1          44 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL----------------------------GNATQVQHLSDLLN   95 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC----------------------------TTCEECSCHHHHHH
T ss_pred             ceEEEEeecccchhhhhhhcccccceEeeccccccchh----------------------------hhhhhhhhHHHHHh
Confidence            36899999999999999999999999999998643200                            011112234 5678


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhcccC-CCCcEEEEecC
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS-SQDRIIGAHFF  447 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~-~~~r~ig~h~~  447 (725)
                      .||+|+.++|-..+.+.-+=++..+.++++++++..+-+  +....+.+.+. .....+++..|
T Consensus        96 ~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~~a~lDV~  159 (188)
T d1sc6a1          96 MSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVF  159 (188)
T ss_dssp             HCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC-
T ss_pred             hccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCceEEEEecC
Confidence            999999999977665544446677788999988743333  33445555553 33334455543

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.20  E-value=0.00026  Score=63.55  Aligned_cols=93  Identities=20%  Similarity=0.207  Sum_probs=68.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChH-HHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e-~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      ++|+|||.|.-|.+-|.+|..+|.+|++--|... ..+++.           +.|             ....+-.|+++.
T Consensus        17 k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~-----------~~G-------------f~v~~~~eA~~~   72 (182)
T d1np3a2          17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAE-----------AHG-------------LKVADVKTAVAA   72 (182)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHH-----------HTT-------------CEEECHHHHHHT
T ss_pred             CEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHh-----------hhc-------------cccccHHHHhhh
Confidence            6899999999999999999999999998776543 333322           222             333333377899


Q ss_pred             CCEEEEeccCChHHHHHHHH-HHHHhCCCCeEEEecCCCCCh
Q 004891          388 VDMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTSTIDL  428 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~-~l~~~~~~~~ii~s~tS~~~~  428 (725)
                      +|+|...+|  -+.-.+++. +|.++++++..+.- +.++.+
T Consensus        73 aDiim~L~P--D~~q~~vy~~~I~p~lk~g~~L~F-aHGfnI  111 (182)
T d1np3a2          73 ADVVMILTP--DEFQGRLYKEEIEPNLKKGATLAF-AHGFSI  111 (182)
T ss_dssp             CSEEEECSC--HHHHHHHHHHHTGGGCCTTCEEEE-SCCHHH
T ss_pred             cCeeeeecc--hHHHHHHHHHhhhhhcCCCcEEEE-eccceE
Confidence            999999999  445557885 69999999998753 334433

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.12  E-value=0.0002  Score=64.50  Aligned_cols=100  Identities=17%  Similarity=0.101  Sum_probs=61.3

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCC-------cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccccc
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  380 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~  380 (725)
                      .||+|||+ |.+|.++|..|++.+.       +++++|.++..... . .+    +.........      ....+...+
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~-~-~l----~~~~~~~~~~------~~~~~~~~~   71 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVL-D-GV----LMELQDCALP------LLKDVIATD   71 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHH-H-HH----HHHHHHTCCT------TEEEEEEES
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhh-h-hh----hhhhcccccc------cccccccCc
Confidence            49999995 9999999999987643       57888886543211 1 01    1000100000      011233333


Q ss_pred             C-cccccCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEE
Q 004891          381 D-YSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILA  420 (725)
Q Consensus       381 ~-~~~l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~  420 (725)
                      + ++++++||+||.+..              .+..+.+++..++.++++.+.+++
T Consensus        72 ~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~ii  126 (154)
T d5mdha1          72 KEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVI  126 (154)
T ss_dssp             CHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             ccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEE
Confidence            3 478999999998862              123566677778888888877543

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=97.10  E-value=0.00049  Score=64.00  Aligned_cols=100  Identities=15%  Similarity=0.122  Sum_probs=64.9

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCC------CcEEEEeC-ChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccc
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNN------IYVVLKEV-NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV  379 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G------~~V~~~d~-~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~  379 (725)
                      .++||+|||.|..|.+-|.+|..+|      ..|++-=+ .....+++.           +.|...        ......
T Consensus        43 g~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~-----------~dGf~v--------~~~~v~  103 (226)
T d1qmga2          43 GIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEAR-----------AAGFSE--------ENGTLG  103 (226)
T ss_dssp             TCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHH-----------HTTCCG--------GGTCEE
T ss_pred             CCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHH-----------HcCCcc--------CCCccc
Confidence            4589999999999999999999966      44654432 222333332           222100        001111


Q ss_pred             cCcccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh
Q 004891          380 LDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL  428 (725)
Q Consensus       380 ~~~~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~  428 (725)
                      +-.|+++.+|+|+..+|  -+.-.+++++|.++++++..+.- +-++.+
T Consensus       104 ~v~EAv~~ADiVmiLlP--De~Q~~vy~~I~p~Lk~G~~L~F-aHGFnI  149 (226)
T d1qmga2         104 DMWETISGSDLVLLLIS--DSAQADNYEKVFSHMKPNSILGL-SHGFLL  149 (226)
T ss_dssp             EHHHHHHTCSEEEECSC--HHHHHHHHHHHHHHSCTTCEEEE-SSSHHH
T ss_pred             CHHHHHhhCCEEEEecc--hHHHHHHHHHHHHhcCCCceeee-cchhhh
Confidence            22267899999999999  44445788999999999998754 234443

>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=97.05  E-value=0.0061  Score=58.86  Aligned_cols=140  Identities=16%  Similarity=0.087  Sum_probs=88.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEE
Q 004891           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (725)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (725)
                      --+++....+.+..+.+.+..+ .+-+|.+.-     |+|+.+.+-...     ...+...+ ..+ ..+. -..|+|++
T Consensus       102 GGS~g~~~~~K~~~a~e~A~~~-~lPlV~l~~-----sgG~r~~eg~~~-----l~~~~~~~-~~~-~~ls-~~vP~i~v  167 (253)
T d1on3a1         102 GGSAGETQSTKVVETMEQALLT-GTPFLFFYD-----SGGARIQEGIDS-----LSGYGKMF-FAN-VKLS-GVVPQIAI  167 (253)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEE-----ECSBCGGGTHHH-----HHHHHHHH-HHH-HHHT-TTSCEEEE
T ss_pred             cccceecccchhhhhHHHHhhc-CCCeEEEEe-----cCCCccccccee-----ccccceeh-HHH-HHHh-ccceEEEE
Confidence            4788999999999999888765 345666642     334444331110     00111111 112 2233 35899999


Q ss_pred             EcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHH-------HHc
Q 004891          105 VEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------WKL  177 (725)
Q Consensus       105 v~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA-------~~~  177 (725)
                      +.|+|+||+.....+||++|+.+.+.+++.                    |++...  ..+|+.++.+|.       ...
T Consensus       168 v~Gp~~GG~a~~~~~~d~vi~~~~a~i~~a--------------------GP~vVe--~~~ge~~~~eelGga~~h~~~s  225 (253)
T d1on3a1         168 IAGPCAGGASYSPALTDFIIMTKKAHMFIT--------------------GPQVIK--SVTGEDVTADELGGAEAHMAIS  225 (253)
T ss_dssp             EEEEEESGGGHHHHHSSEEEEETTCEEESS--------------------CHHHHH--HHHCCCCCHHHHHSHHHHHHTT
T ss_pred             EecCcccceeeccchhhheeccccceEEec--------------------Ccchhh--hhhCCcCChHhccCHHHhhhcc
Confidence            999999999999999999999998877753                    111111  135677776543       457


Q ss_pred             CCcceecCcchHHHHHHHHHHHHHhc
Q 004891          178 GLIDAVVTSEELLKVSRLWALDIAAR  203 (725)
Q Consensus       178 Glv~~vv~~~~l~~~a~~~a~~la~~  203 (725)
                      |+||.|++.++   .+.++++++.+.
T Consensus       226 G~iD~v~~~e~---~a~~~~r~lls~  248 (253)
T d1on3a1         226 GNIHFVAEDDD---AAELIAKKLLSF  248 (253)
T ss_dssp             CCCSEEESSHH---HHHHHHHHHHHT
T ss_pred             ccceEEECCHH---HHHHHHHHHHHh
Confidence            99999997764   455666555443

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=97.04  E-value=0.00032  Score=62.59  Aligned_cols=87  Identities=14%  Similarity=0.094  Sum_probs=63.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  388 (725)
                      +++.|+|.|..|.++|+.+...|..|+++++||-.+-++                        .++..+..+-.++++.+
T Consensus        24 k~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA------------------------~mdGf~v~~~~~a~~~a   79 (163)
T d1v8ba1          24 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQA------------------------VMEGFNVVTLDEIVDKG   79 (163)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHH------------------------HTTTCEECCHHHHTTTC
T ss_pred             CEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHH------------------------HhcCCccCchhHccccC
Confidence            689999999999999999999999999999999653222                        11223333333778999


Q ss_pred             CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (725)
Q Consensus       389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (725)
                      |++|.+....-.+..+    -.+.+++++||+...
T Consensus        80 Di~vTaTGn~~vI~~~----h~~~MKdgaIl~N~G  110 (163)
T d1v8ba1          80 DFFITCTGNVDVIKLE----HLLKMKNNAVVGNIG  110 (163)
T ss_dssp             SEEEECCSSSSSBCHH----HHTTCCTTCEEEECS
T ss_pred             cEEEEcCCCCccccHH----HHHHhhCCeEEEecc
Confidence            9999998754433333    344578999987543

>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.0029  Score=61.67  Aligned_cols=143  Identities=20%  Similarity=0.223  Sum_probs=88.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEE
Q 004891           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (725)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (725)
                      --+++....+.+..+.+.+.++ .+-.|.++-     |.|+.+.+-...     ...+.... ..+ ..+.....|+|++
T Consensus       109 gGS~g~~~~~Ki~~a~e~A~~~-~lPlI~~~~-----sgG~r~~e~~~s-----l~~~~~~~-~~~-~~~~~~~vP~I~v  175 (263)
T d2f9yb1         109 GGSMGSVVGARFVRAVEQALED-NCPLICFSA-----SGGARMQEALMS-----LMQMAKTS-AAL-AKMQERGLPYISV  175 (263)
T ss_dssp             TTCBCTHHHHHHHHHHHHHHHH-TCCEEEEEE-----ESSBCGGGTHHH-----HHHHHHHH-HHH-HHHHHTTCCEEEE
T ss_pred             ccccccchhhHHhHHHHHHHHc-CCCeEEEec-----CCCcccccccch-----hhcchhHH-HHH-HHHHhCCCceEEE
Confidence            4788888999999999888764 455666653     334444332110     00111111 122 3356688999999


Q ss_pred             Ecccccchhh-HHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCC-----CHHHHHHcC
Q 004891          105 VEGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI-----TSEEGWKLG  178 (725)
Q Consensus       105 v~G~a~GgG~-~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~-----~a~eA~~~G  178 (725)
                      +.|+|.||+. .+++++|++++.+.+.+++.                    |++.. + ..+|+.+     +++-..+.|
T Consensus       176 ~~g~~~GG~aa~~~~~~d~i~~~~~s~i~~a--------------------GP~vv-e-~~~ge~~~e~~g~a~~~~~~G  233 (263)
T d2f9yb1         176 LTDPTMGGVSASFAMLGDLNIAEPKALIGFA--------------------GPRVI-E-QTVREKLPPGFQRSEFLIEKG  233 (263)
T ss_dssp             EEEEEEHHHHTTGGGCCSEEEECTTCBEESS--------------------CHHHH-H-HHHTSCCCTTTTBHHHHGGGT
T ss_pred             ecCCcchHHHhhhhhcCceEeeecceeeecc--------------------CHHHH-h-hhcCCcCChhhccHHHHHhCC
Confidence            9999999986 57778888888888777653                    11111 1 1335444     344456789


Q ss_pred             CcceecCcchHHHHHHHHHHHHHh
Q 004891          179 LIDAVVTSEELLKVSRLWALDIAA  202 (725)
Q Consensus       179 lv~~vv~~~~l~~~a~~~a~~la~  202 (725)
                      +||.+++.++..++..++.+-|..
T Consensus       234 ~iD~vv~~ee~~~~l~~~l~~L~~  257 (263)
T d2f9yb1         234 AIDMIVRRPEMRLKLASILAKLMN  257 (263)
T ss_dssp             CCSEECCHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEECCHHHHHHHHHHHHHHhh
Confidence            999999877765555454444443

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=96.98  E-value=0.00061  Score=62.35  Aligned_cols=105  Identities=11%  Similarity=0.137  Sum_probs=64.7

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCC-------cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccc
Q 004891          308 VRKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV  379 (725)
Q Consensus       308 ~~kIaVIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~  379 (725)
                      .-||+|+|+ |.+|.+++..|++...       ++.++|+++..-.  .+.+.-.+.    ....      ........+
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~--l~g~~mdl~----d~a~------~~~~~~~~~   91 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQA--LEGVAMELE----DSLY------PLLREVSIG   91 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHH--HHHHHHHHH----TTTC------TTEEEEEEE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccch--hcchhhhhc----cccc------ccccCcccc
Confidence            458999996 9999999999998642       5677787654311  111111111    1100      011233334


Q ss_pred             c-CcccccCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891          380 L-DYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTS  424 (725)
Q Consensus       380 ~-~~~~l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS  424 (725)
                      + ++++++++|+||....              .+..+.+++...+.++++++++|+..+.
T Consensus        92 ~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N  151 (175)
T d7mdha1          92 IDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN  151 (175)
T ss_dssp             SCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             ccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC
Confidence            4 4588999999998862              1344566667778899988886654443

>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=96.96  E-value=0.0035  Score=61.76  Aligned_cols=161  Identities=14%  Similarity=0.062  Sum_probs=91.9

Q ss_pred             CCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCC
Q 004891           21 INPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCK   98 (725)
Q Consensus        21 ~~p~--~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   98 (725)
                      |++.  --++++...+.+.++++.+.+. .+-+|.|.-     |.|+.+.+-.....  ........+.+ + ..+....
T Consensus       111 ~D~t~~gGs~~~~~~~K~~r~~~lA~~~-~lP~I~l~d-----s~Ga~~~~~~e~~~--~~~~~g~~~~~-~-a~ls~~~  180 (287)
T d1pixa2         111 SDNKKLAGAWVPGQAECLLRASDTAKTL-HVPLVYVLN-----CSGVKFDEQEKVYP--NRRGGGTPFFR-N-AELNQLG  180 (287)
T ss_dssp             ECTTTTTTEECTTHHHHHHHHHHHHHHH-TCCEEEEEC-----CCEECGGGHHHHSS--STTSTTHHHHH-H-HHHHHTT
T ss_pred             eccccccccchhhHHHHHHHHHHhhhhc-CCCEEEEec-----CCcccCCcchhhcc--chhhHHHHHHH-H-HHHhhcC
Confidence            4443  3688888888888888877764 455666653     33444432211100  01111122212 2 2356678


Q ss_pred             CcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCccc--ccCCCCCchhhchHhhhhCHHHHHHH-HHcCCCC-----C
Q 004891           99 KPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL--TLGVIPGFGGTQRLPRLVGLSKAIEM-MLLSKSI-----T  170 (725)
Q Consensus        99 kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~--~~Gl~p~~g~~~~l~r~vG~~~a~~l-~l~g~~~-----~  170 (725)
                      +|+|++|.|.|.|||...+++||++++.+++.+.+.-.  --+..+..+.        ....+.++ ..+|+.+     .
T Consensus       181 VP~Isvv~G~~~gGgAy~~~~~~~i~~~~~a~i~~~Gp~vv~~~~~~~~~--------~~~~~~ei~~~~ge~~~~eeLG  252 (287)
T d1pixa2         181 IPVIVGIYGTNPAGGGYHSISPTVIIAHEKANMAVGGAGIMGGMNPKGHV--------DLEYANEIADMVDRTGKTEPPG  252 (287)
T ss_dssp             CCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESCCCTTCCSCCSSSSC--------CHHHHHHHHHHHHTTCCCCCSS
T ss_pred             CCeEEEecCCccccceeccccceeEEecCCeEEEEECHHHhcccchhhhh--------hhhhHHHHHhhhcccccccccc
Confidence            99999999999999988888888888889888776322  2222222221        11111111 1234444     4


Q ss_pred             HHHH--HHcCCcceecCcchHHHHHHHHHHHHHh
Q 004891          171 SEEG--WKLGLIDAVVTSEELLKVSRLWALDIAA  202 (725)
Q Consensus       171 a~eA--~~~Glv~~vv~~~~l~~~a~~~a~~la~  202 (725)
                      ..+.  ...|++|.|++.+   +++.+.++++.+
T Consensus       253 Ga~~H~~~sG~~d~v~~~e---~~ai~~~r~~ls  283 (287)
T d1pixa2         253 AVDIHYTETGFMREVYASE---EGVLEGIKKYVG  283 (287)
T ss_dssp             BHHHHTTTSCCSCEEESSH---HHHHHHHHHHHH
T ss_pred             cHHHhhhhcccceeecCCH---HHHHHHHHHHHh
Confidence            4433  4579999999664   345555555443

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.92  E-value=0.00058  Score=61.35  Aligned_cols=94  Identities=18%  Similarity=0.209  Sum_probs=64.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      -||.|||+|..|..=+....+-|..|+++|.+++++++....    +...++....+.+             .+ +.+++
T Consensus        33 a~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~----~~~~~~~~~~~~~-------------~l~~~~~~   95 (168)
T d1pjca1          33 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETL----FGSRVELLYSNSA-------------EIETAVAE   95 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----HGGGSEEEECCHH-------------HHHHHHHT
T ss_pred             cEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHh----hcccceeehhhhh-------------hHHHhhcc
Confidence            689999999999999999999999999999999988765332    1111111101111             11 56789


Q ss_pred             CCEEEEec--cC---ChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891          388 VDMVIEAV--IE---SVPLKQKIFSELEKACPPHCILATNT  423 (725)
Q Consensus       388 aDlVIeav--pe---~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (725)
                      ||+||-++  |.   +.-+.    ++..+.++|+.+|++.+
T Consensus        96 aDivI~aalipG~~aP~lIt----~~mv~~Mk~GSVIVDva  132 (168)
T d1pjca1          96 ADLLIGAVLVPGRRAPILVP----ASLVEQMRTGSVIVDVA  132 (168)
T ss_dssp             CSEEEECCCCTTSSCCCCBC----HHHHTTSCTTCEEEETT
T ss_pred             CcEEEEeeecCCcccCeeec----HHHHhhcCCCcEEEEee
Confidence            99999998  21   12232    34456689999988643

>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.91  E-value=0.012  Score=56.71  Aligned_cols=146  Identities=11%  Similarity=0.083  Sum_probs=90.3

Q ss_pred             EEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004891           18 ITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (725)
Q Consensus        18 i~l~~p~--~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (725)
                      |.-+++.  --+++....+.+..+.+.+.+. .+-.|.|..     |+|+.+.+-...     ...+.... ... . ..
T Consensus        90 v~a~D~t~~gGs~g~~~~~K~~r~~e~A~~~-~~P~I~~~d-----sgG~r~~e~~~~-----l~~~~~~~-~~~-~-~~  155 (251)
T d1vrga1          90 VFSQDFTVMGGSLGEMHAKKIVKLLDLALKM-GIPVIGIND-----SGGARIQEGVDA-----LAGYGEIF-LRN-T-LA  155 (251)
T ss_dssp             EEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEE-----ECSBCGGGTHHH-----HHHHHHHH-HHH-H-HH
T ss_pred             EeeehhhhhhcccchHHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCccccccccc-----cccchHHH-HHH-H-HH
Confidence            3334443  4788888888899988877755 345666643     234444332110     00111111 112 2 33


Q ss_pred             hCCCcEEEEEcccccchhhHHhhhcCEEEeeCC-ceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHH
Q 004891           96 DCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG  174 (725)
Q Consensus        96 ~~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~-a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA  174 (725)
                      .-..|+|+++.|+|.||+......||++|+.+. +.+++.                    |+... + ..+|+.++.++.
T Consensus       156 s~~iP~I~vv~G~~~gG~a~~~~~~d~~im~~~~a~i~~a--------------------Gp~vv-~-~~~ge~~~~eel  213 (251)
T d1vrga1         156 SGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFIT--------------------GPNVI-K-AVTGEEISQEDL  213 (251)
T ss_dssp             TTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBSS--------------------CHHHH-H-HHHCCCCCHHHH
T ss_pred             CCCCCEEEEEccCccccceehhhhCceEEEEccceeEEec--------------------Cchhh-h-hhcCCcCChHHc
Confidence            457999999999999999999999999998754 443321                    11111 1 257788998875


Q ss_pred             -------HHcCCcceecCcchHHHHHHHHHHHHHh
Q 004891          175 -------WKLGLIDAVVTSEELLKVSRLWALDIAA  202 (725)
Q Consensus       175 -------~~~Glv~~vv~~~~l~~~a~~~a~~la~  202 (725)
                             ...|++|.+++.+   +.+.+.++++.+
T Consensus       214 Gga~~h~~~sG~~D~v~~de---~~a~~~ir~lLs  245 (251)
T d1vrga1         214 GGAMVHNQKSGNAHFLADND---EKAMSLVRTLLS  245 (251)
T ss_dssp             HBHHHHHHTSCCCSEEESSH---HHHHHHHHHHHT
T ss_pred             cchhhhhhccccceEEECCH---HHHHHHHHHHHH
Confidence                   4679999999765   344555555544

>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.0024  Score=63.53  Aligned_cols=136  Identities=14%  Similarity=0.037  Sum_probs=93.1

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEEc
Q 004891           27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE  106 (725)
Q Consensus        27 al~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~  106 (725)
                      .++++-+..-.+.++.++.- .+-+|-|--.+++| .|.+-.+.          -......+.+ ..+..+..|+|+.|-
T Consensus       131 ~~~p~~~rKa~r~~~~a~~~-~~Pii~~vDtpG~~-~g~~~E~~----------g~~~~~a~~~-~~~~~~~vP~i~vv~  197 (316)
T d2f9ya1         131 MPAPEGYRKALRLMQMAERF-KMPIITFIDTPGAY-PGVGAEER----------GQSEAIARNL-REMSRLGVPVVCTVI  197 (316)
T ss_dssp             CCCHHHHHHHHHHHHHHHHT-TCCEEEEEEESCSC-CSHHHHHT----------THHHHHHHHH-HHHHTCSSCEEEEEE
T ss_pred             cccHHHHHHHHHHHHHHHHc-CcceEEEEecCccc-CCcccccc----------cHHHHHHHHH-HHHHhCCCceEEEEE
Confidence            57888888888888887764 45555553333323 23222211          1223344555 568899999999999


Q ss_pred             ccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 004891          107 GLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT  185 (725)
Q Consensus       107 G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~  185 (725)
                      |-+.|||..-...+|.++|.++|.++.      +.|.++.+..+...--...|.+    ...+++++.+++|+||+|+|
T Consensus       198 g~g~~gga~a~~~~d~v~m~~~a~~sv------ispEg~AsILwkd~~~a~eaAe----alklta~dL~~lgiIDeII~  266 (316)
T d2f9ya1         198 GEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAPLAAE----AMGIIRPRLKELKLIDSIIP  266 (316)
T ss_dssp             EEEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHHHHHH----HHTCSHHHHHTTTSCSCCCC
T ss_pred             hhhhchhhhhhhhhhHHHHHhhhHHhh------ccchhhhhHhhccchhhcchHH----HHhhhhHHHHHcCchhhccc
Confidence            999999999889999999999999983      2455555544443322233333    23489999999999999995

>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.81  E-value=0.016  Score=55.89  Aligned_cols=139  Identities=15%  Similarity=0.077  Sum_probs=87.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEE
Q 004891           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (725)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (725)
                      .-+++....+.+..+.+.+.++ .+-+|.|.-     |+|+.+.+-..    . ...+.. .....  ....-..|+|++
T Consensus       102 gGS~g~~~g~K~~ra~e~A~~~-~lP~I~l~d-----sgGar~~eg~~----~-~~~~~~-~~~~~--~~~~~~vP~I~~  167 (258)
T d2a7sa1         102 GGSLGEVYGEKIVKVQELAIKT-GRPLIGIND-----GAGARIQEGVV----S-LGLYSR-IFRNN--ILASGVIPQISL  167 (258)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEC-----CCSBCGGGCTH----H-HHHHHH-HHHHH--HHHTTTSCEEEE
T ss_pred             CCccchhhhhHHHHHHHHHHhc-CCceEEEec-----cCCcccccccc----c-ccchhh-HHHHH--HHHcCCCCEEEE
Confidence            4788899999999999888765 355666653     33444432110    0 000111 11112  234567999999


Q ss_pred             EcccccchhhHHhhhcCEEEeeC-CceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHH-------HH
Q 004891          105 VEGLALGGGLELAMGCHARIAAP-KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------WK  176 (725)
Q Consensus       105 v~G~a~GgG~~lalacD~~ia~~-~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA-------~~  176 (725)
                      +.|+|.||+......||++|+.+ .+++++.                    |++..+  ..+|+.++.+|.       .+
T Consensus       168 v~G~~~gG~a~~~~~~d~~vm~~~~a~i~~a--------------------GP~vV~--~~~ge~~~~eeLGga~~h~~~  225 (258)
T d2a7sa1         168 IMGAAAGGHVYSPALTDFVIMVDQTSQMFIT--------------------GPDVIK--TVTGEEVTMEELGGAHTHMAK  225 (258)
T ss_dssp             ECSCCBSGGGHHHHHSSEEEEEBTTBBCBSS--------------------CHHHHH--HHHCCCCCHHHHHBHHHHHHT
T ss_pred             EecCcccHHHHHHHhccceEeecCceEEEcc--------------------ChhHHH--HhcCCccChhhccCHhHhhhh
Confidence            99999999999999999999874 4554432                    222222  247888988764       46


Q ss_pred             cCCcceecCcchHHHHHHHHHHHHHh
Q 004891          177 LGLIDAVVTSEELLKVSRLWALDIAA  202 (725)
Q Consensus       177 ~Glv~~vv~~~~l~~~a~~~a~~la~  202 (725)
                      .|++|.+++.+   +.+.+.++++.+
T Consensus       226 sG~~D~v~~de---~~a~~~~r~~Ls  248 (258)
T d2a7sa1         226 SGTAHYAASGE---QDAFDYVRELLS  248 (258)
T ss_dssp             SCCCSEEESSH---HHHHHHHHHHHH
T ss_pred             ccccceEeCCH---HHHHHHHHHHHH
Confidence            79999999654   344445554443

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00012  Score=69.19  Aligned_cols=39  Identities=23%  Similarity=0.297  Sum_probs=35.7

Q ss_pred             CCcceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHH
Q 004891          306 RGVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYL  344 (725)
Q Consensus       306 ~~~~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~  344 (725)
                      |.|+||.|+|+ |.+|+.++..|+++|++|++++|+++++
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~   40 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRL   40 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhc
Confidence            46899999995 9999999999999999999999998764

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=96.71  E-value=0.00033  Score=62.96  Aligned_cols=102  Identities=16%  Similarity=0.109  Sum_probs=60.9

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCC-------cEEEEeCC--hHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccc
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVN--SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG  378 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~--~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~  378 (725)
                      .||+|||+ |.+|..+|..|+..++       ...+++.+  .+.++.....    +    .....      .....+..
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~----~----~~~~~------~~~~~~~~   70 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVME----L----EDCAF------PLLAGLEA   70 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHH----H----HTTTC------TTEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhh----h----hcccc------cccccccc
Confidence            48999997 9999999999998764       13344443  3332221110    0    10000      00112232


Q ss_pred             c-cCcccccCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004891          379 V-LDYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTS  424 (725)
Q Consensus       379 ~-~~~~~l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS  424 (725)
                      + ++++++++||+||.+.-              .+..+.+++..++.++++++++++..|.
T Consensus        71 ~~~~~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN  131 (154)
T d1y7ta1          71 TDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN  131 (154)
T ss_dssp             ESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             CCchhhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC
Confidence            3 33478999999998872              1345666667778888888887654443

>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.68  E-value=0.017  Score=55.84  Aligned_cols=139  Identities=12%  Similarity=0.072  Sum_probs=88.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEE
Q 004891           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (725)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (725)
                      --+++....+.+..+.+.+..+ .+-.|.|.-.|     |+.+.+-...     ...+.. ..... . ...-..|+|++
T Consensus       101 gGS~g~~~~~K~~r~~e~A~~~-~lPlI~l~dsg-----Garm~e~~~~-----~~~~~~-~~~~~-~-~~s~~vP~I~v  166 (258)
T d1xnya1         101 GGALGEVYGQKIVKVMDFALKT-GCPVVGINDSG-----GARIQEGVAS-----LGAYGE-IFRRN-T-HASGVIPQISL  166 (258)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECCC-----SBCGGGTHHH-----HHHHHH-HHHHH-H-HTTTTSCEEEE
T ss_pred             cCccchhhHHHHHHHHHHHHHc-CCceEEEecCC-----CcccCccccc-----ccchhH-HHHHH-H-HHcCCCCEEEE
Confidence            4788899999999999888765 46677776433     3444332110     000111 11112 1 23456999999


Q ss_pred             EcccccchhhHHhhhcCEEEeeC-CceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCCCHHHH-------HH
Q 004891          105 VEGLALGGGLELAMGCHARIAAP-KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------WK  176 (725)
Q Consensus       105 v~G~a~GgG~~lalacD~~ia~~-~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA-------~~  176 (725)
                      +.|+|.||+......||++|+.+ .+.+++.                    |++...  ..+|+.++.+|+       ..
T Consensus       167 v~G~~~gG~a~~~~~~~~vim~~~~a~i~~a--------------------GP~vv~--~~~ge~i~~eelgga~~h~~~  224 (258)
T d1xnya1         167 VVGPCAGGAVYSPAITDFTVMVDQTSHMFIT--------------------GPDVIK--TVTGEDVGFEELGGARTHNST  224 (258)
T ss_dssp             ECSEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------CHHHHH--HHHCCCCCHHHHHBHHHHHHT
T ss_pred             EcCCcChhHHHHHHhccchhhcccceEEEec--------------------CHHHHH--HHhcCccChHHhccHHHHHhc
Confidence            99999999999999999999875 5555532                    111111  357888888885       46


Q ss_pred             cCCcceecCcchHHHHHHHHHHHHHh
Q 004891          177 LGLIDAVVTSEELLKVSRLWALDIAA  202 (725)
Q Consensus       177 ~Glv~~vv~~~~l~~~a~~~a~~la~  202 (725)
                      .|++|.+++.+   +.+.+.++++.+
T Consensus       225 sG~~d~v~~de---~ea~~~~r~~Ls  247 (258)
T d1xnya1         225 SGVAHHMAGDE---KDAVEYVKQLLS  247 (258)
T ss_dssp             SSCCSEEESSH---HHHHHHHHHHHH
T ss_pred             CCeeEEEeCCH---HHHHHHHHHHHH
Confidence            79999999654   344444444433

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.67  E-value=0.002  Score=58.40  Aligned_cols=39  Identities=21%  Similarity=0.093  Sum_probs=35.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKG  347 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~  347 (725)
                      ++|.|||+|-++.+++..|.+.|. +|++++|+.++.+..
T Consensus        18 ~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L   57 (167)
T d1npya1          18 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYL   57 (167)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHH
Confidence            689999999999999999999997 899999999987664

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=96.57  E-value=0.0031  Score=51.32  Aligned_cols=37  Identities=27%  Similarity=0.369  Sum_probs=33.1

Q ss_pred             CCcceEEEEcCCCCc-HHHHHHHHHCCCcEEEEeCChH
Q 004891          306 RGVRKVAVIGGGLMG-SGIATAHILNNIYVVLKEVNSE  342 (725)
Q Consensus       306 ~~~~kIaVIG~G~mG-~~iA~~l~~~G~~V~~~d~~~e  342 (725)
                      ..++||-|||.|-+| +++|+.|.+.|++|+++|....
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~   43 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG   43 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            457899999999999 7789999999999999998754

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.54  E-value=0.0013  Score=59.95  Aligned_cols=70  Identities=17%  Similarity=0.246  Sum_probs=51.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccc-ccCcccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~l~~  387 (725)
                      ++|.|+|+|-++.+++..|.+.+.+|++++|+.++++...+.+.       ..+            .+.. ..+...+.+
T Consensus        19 k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~-------~~~------------~~~~~~~~~~~~~~   79 (171)
T d1p77a1          19 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQ-------PYG------------NIQAVSMDSIPLQT   79 (171)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHG-------GGS------------CEEEEEGGGCCCSC
T ss_pred             CEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHh-------hcc------------ccchhhhccccccc
Confidence            68999999999999999999988899999999988777544321       111            1111 112234688


Q ss_pred             CCEEEEeccC
Q 004891          388 VDMVIEAVIE  397 (725)
Q Consensus       388 aDlVIeavpe  397 (725)
                      +|+||.|+|-
T Consensus        80 ~diiIN~tp~   89 (171)
T d1p77a1          80 YDLVINATSA   89 (171)
T ss_dssp             CSEEEECCCC
T ss_pred             cceeeecccc
Confidence            9999999983

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.48  E-value=0.0016  Score=59.20  Aligned_cols=40  Identities=13%  Similarity=0.121  Sum_probs=36.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~  348 (725)
                      ++|.|+|+|-.+.+++..|.+.|.+|++++|+.++++...
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~   58 (170)
T d1nyta1          19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELA   58 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHH
Confidence            6899999999999999999999999999999999877654

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=96.41  E-value=0.008  Score=54.10  Aligned_cols=77  Identities=21%  Similarity=0.174  Sum_probs=50.1

Q ss_pred             ceEEEEcCCCCcHH-HHHHHHHC-CCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccc-c
Q 004891          309 RKVAVIGGGLMGSG-IATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-F  385 (725)
Q Consensus       309 ~kIaVIG~G~mG~~-iA~~l~~~-G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l  385 (725)
                      .||||||+|.||.. ....+.+. +.+++++|++++.++...+.                      .+.....++++. +
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~----------------------~~~~~~~~~~~~ll   59 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATR----------------------YRVSATCTDYRDVL   59 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHH----------------------TTCCCCCSSTTGGG
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh----------------------cccccccccHHHhc
Confidence            48999999999976 45556554 56888999999887765321                      111222344433 3


Q ss_pred             -cCCCEEEEeccCChHHHHHHHHHH
Q 004891          386 -KDVDMVIEAVIESVPLKQKIFSEL  409 (725)
Q Consensus       386 -~~aDlVIeavpe~~~~k~~v~~~l  409 (725)
                       .+.|+|+.|+|.....  ++....
T Consensus        60 ~~~iD~V~I~tp~~~H~--~~~~~a   82 (167)
T d1xeaa1          60 QYGVDAVMIHAATDVHS--TLAAFF   82 (167)
T ss_dssp             GGCCSEEEECSCGGGHH--HHHHHH
T ss_pred             ccccceecccccccccc--cccccc
Confidence             4689999999955443  444443

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.28  E-value=0.002  Score=59.79  Aligned_cols=44  Identities=18%  Similarity=0.150  Sum_probs=38.4

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHH
Q 004891          309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE  352 (725)
Q Consensus       309 ~kIaVIG-~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~  352 (725)
                      ++|.|.| .|.+|..+|..|++.|.+|++.+|++++++...+.+.
T Consensus        24 K~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~   68 (191)
T d1luaa1          24 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVN   68 (191)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHH
Confidence            6788888 5999999999999999999999999999887765543

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.15  E-value=0.0071  Score=50.68  Aligned_cols=79  Identities=18%  Similarity=0.204  Sum_probs=54.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccccc---Ccccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL---DYSEF  385 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~---~~~~l  385 (725)
                      ++|.|||+|..|..-|..|.+.|.+|++++.....-..          .+.+.+            +++...   +.+.+
T Consensus        13 k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~----------~~~~~~------------~i~~~~~~~~~~dl   70 (113)
T d1pjqa1          13 RDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFT----------VWANEG------------MLTLVEGPFDETLL   70 (113)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHH----------HHHTTT------------SCEEEESSCCGGGG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHH----------HHHhcC------------CceeeccCCCHHHh
Confidence            68999999999999999999999999999876543111          112222            222222   22568


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHH
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELE  410 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~  410 (725)
                      .++++|+.|. ++..+...+++...
T Consensus        71 ~~~~lv~~at-~d~~~n~~i~~~a~   94 (113)
T d1pjqa1          71 DSCWLAIAAT-DDDTVNQRVSDAAE   94 (113)
T ss_dssp             TTCSEEEECC-SCHHHHHHHHHHHH
T ss_pred             CCCcEEeecC-CCHHHHHHHHHHHH
Confidence            8999999775 46666666655543

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.15  E-value=0.0025  Score=58.28  Aligned_cols=73  Identities=16%  Similarity=0.236  Sum_probs=51.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccccC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  387 (725)
                      ++|.|||+|-++.+++..|.+.| +|++++|+.++++...+.+...+.....             ..+. ..++ ....+
T Consensus        19 k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~-------------~~~~-~~~~~~~~~~   83 (177)
T d1nvta1          19 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFG-------------EEVK-FSGLDVDLDG   83 (177)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHH-------------HHEE-EECTTCCCTT
T ss_pred             CEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhh-------------hhhh-hhhhhhccch
Confidence            67999999999999999998777 9999999999988776554332111000             0011 1222 44677


Q ss_pred             CCEEEEecc
Q 004891          388 VDMVIEAVI  396 (725)
Q Consensus       388 aDlVIeavp  396 (725)
                      +|+||.|.|
T Consensus        84 ~dliIn~tp   92 (177)
T d1nvta1          84 VDIIINATP   92 (177)
T ss_dssp             CCEEEECSC
T ss_pred             hhhhccCCc
Confidence            899999887

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.11  E-value=0.007  Score=51.95  Aligned_cols=79  Identities=23%  Similarity=0.223  Sum_probs=54.6

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEE-EeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVL-KEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~-~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      +||+|+|+ |.||+.++..+.+.|++++. +|.+                                        ..+.+.
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~----------------------------------------~~~~~~   40 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVN----------------------------------------GVEELD   40 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETT----------------------------------------EEEECS
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCC----------------------------------------cHHHhc
Confidence            47999996 99999999999999998764 2322                                        114567


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHh
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG  432 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~  432 (725)
                      ++|+||+-..  ++...+.++...++   +.-+++.|+++.-+++.
T Consensus        41 ~~DVvIDFS~--p~~~~~~l~~~~~~---~~p~ViGTTG~~~~~~~   81 (128)
T d1vm6a3          41 SPDVVIDFSS--PEALPKTVDLCKKY---RAGLVLGTTALKEEHLQ   81 (128)
T ss_dssp             CCSEEEECSC--GGGHHHHHHHHHHH---TCEEEECCCSCCHHHHH
T ss_pred             cCCEEEEecC--HHHHHHHHHHHHhc---CCCEEEEcCCCCHHHHH
Confidence            8999998765  55545555544433   44566777887765444

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.08  E-value=0.0011  Score=53.75  Aligned_cols=34  Identities=18%  Similarity=0.290  Sum_probs=31.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e  342 (725)
                      +||.|+|+|..|.++|..|.+.|++|+++|.+..
T Consensus         6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            6899999999999999999999999999998654

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.07  E-value=0.011  Score=54.05  Aligned_cols=73  Identities=14%  Similarity=0.117  Sum_probs=49.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccc-c-
Q 004891          310 KVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-F-  385 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l-  385 (725)
                      ||||||+|.||...+..+... +++|+ ++|+++++++...+.          .+.         .......++++. + 
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~----------~~~---------~~~~~~~~~~~~ll~   63 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATA----------NNY---------PESTKIHGSYESLLE   63 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHH----------TTC---------CTTCEEESSHHHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhc----------ccc---------ccceeecCcHHHhhh
Confidence            799999999999999888776 66776 679999876554221          110         011233455533 2 


Q ss_pred             -cCCCEEEEeccCChHH
Q 004891          386 -KDVDMVIEAVIESVPL  401 (725)
Q Consensus       386 -~~aDlVIeavpe~~~~  401 (725)
                       .+.|+|+.|.|.+...
T Consensus        64 ~~~iD~v~I~tp~~~h~   80 (184)
T d1ydwa1          64 DPEIDALYVPLPTSLHV   80 (184)
T ss_dssp             CTTCCEEEECCCGGGHH
T ss_pred             ccccceeeecccchhhc
Confidence             5689999999855543

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.04  E-value=0.0017  Score=62.52  Aligned_cols=35  Identities=20%  Similarity=0.280  Sum_probs=32.3

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCh
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (725)
                      +-+||.|||+|.+|.+.|..|+++|++|+++|++.
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            45789999999999999999999999999999863

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=96.02  E-value=0.0039  Score=56.07  Aligned_cols=76  Identities=12%  Similarity=0.012  Sum_probs=48.8

Q ss_pred             ceEEEEcCCCCcHH-HHHHHHHC-CCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cc
Q 004891          309 RKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (725)
Q Consensus       309 ~kIaVIG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (725)
                      .||||||+|.||.. ....+... +++++ ++|+++++++...+..                       .+...++. +.
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~-----------------------~~~~~~~~~~l   58 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW-----------------------RIPYADSLSSL   58 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH-----------------------TCCBCSSHHHH
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcc-----------------------cccccccchhh
Confidence            37999999999986 45555544 66654 7899988766543211                       12233444 33


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHH
Q 004891          385 FKDVDMVIEAVIESVPLKQKIFSEL  409 (725)
Q Consensus       385 l~~aDlVIeavpe~~~~k~~v~~~l  409 (725)
                      +++.|+|++|.|.+...  ++....
T Consensus        59 ~~~~D~V~I~tp~~~h~--~~~~~a   81 (164)
T d1tlta1          59 AASCDAVFVHSSTASHF--DVVSTL   81 (164)
T ss_dssp             HTTCSEEEECSCTTHHH--HHHHHH
T ss_pred             hhhcccccccccchhcc--cccccc
Confidence            57899999999955443  444443

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=96.00  E-value=0.01  Score=55.08  Aligned_cols=39  Identities=18%  Similarity=0.273  Sum_probs=36.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~  347 (725)
                      ++|+|.|.|.+|..+|..|.+.|.+|+++|.+++.+...
T Consensus        28 k~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~   66 (201)
T d1c1da1          28 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHA   66 (201)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHH
Confidence            689999999999999999999999999999999887654

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.96  E-value=0.0083  Score=47.86  Aligned_cols=65  Identities=20%  Similarity=0.148  Sum_probs=46.0

Q ss_pred             ceEEEEcCCCCcH-HHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGGLMGS-GIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~mG~-~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      +||-|||.|-+|- ++|..|.+.|++|.++|+++...-+.          +.+.|.           .+....+.+.+.+
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~----------L~~~Gi-----------~i~~gh~~~~i~~   60 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAY----------LRKLGI-----------PIFVPHSADNWYD   60 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHH----------HHHTTC-----------CEESSCCTTSCCC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHH----------HHHCCC-----------eEEeeecccccCC
Confidence            5799999999986 78999999999999999986432221          223331           1222334466788


Q ss_pred             CCEEEEe
Q 004891          388 VDMVIEA  394 (725)
Q Consensus       388 aDlVIea  394 (725)
                      +|+||.+
T Consensus        61 ~d~vV~S   67 (89)
T d1j6ua1          61 PDLVIKT   67 (89)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEe
Confidence            9999865

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=95.95  E-value=0.0016  Score=65.21  Aligned_cols=59  Identities=14%  Similarity=0.153  Sum_probs=42.7

Q ss_pred             HHHhCCHhHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCh
Q 004891          271 KELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (725)
Q Consensus       271 ~~~~~s~~~~~~i~aF~~~r~~~~~~~~~~~~~~~~~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (725)
                      +.|...++..+.++-....-++.            ..-+||+|||+|.-|.+.|..|+++|++|+++|.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~------------~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1           5 AECFQENDYEEFLEIARNGLKAT------------SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             GGGGCCTTHHHHHHHHHHCSCCC------------SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             HhhcCCccHHHHHHHHhcCCCCC------------CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            45777777666544322211111            122689999999999999999999999999999864

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.91  E-value=0.0047  Score=54.38  Aligned_cols=99  Identities=15%  Similarity=0.227  Sum_probs=58.6

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHC-CC---cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc
Q 004891          308 VRKVAVIGG-GLMGSGIATAHILN-NI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (725)
Q Consensus       308 ~~kIaVIG~-G~mG~~iA~~l~~~-G~---~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (725)
                      |+||||||+ |..|.-+.+.|..+ .+   +++.+..+...-..            +..+.        .........+.
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~------------~~~~~--------~~~~~~~~~~~   60 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAA------------PSFGG--------TTGTLQDAFDL   60 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBC------------CGGGT--------CCCBCEETTCH
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccc------------ccccC--------Cceeeecccch
Confidence            579999999 99999999877664 33   45656554322000            00000        00001111222


Q ss_pred             ccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 004891          383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  429 (725)
Q Consensus       383 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~  429 (725)
                      +.++++|++|.|+|  .+..+++..++.+ ...+++|++++|...+.
T Consensus        61 ~~~~~~DivF~a~~--~~~s~~~~~~~~~-~g~~~~VID~Ss~fR~~  104 (146)
T d1t4ba1          61 EALKALDIIVTCQG--GDYTNEIYPKLRE-SGWQGYWIDAASSLRMK  104 (146)
T ss_dssp             HHHHTCSEEEECSC--HHHHHHHHHHHHH-TTCCCEEEECSSTTTTC
T ss_pred             hhhhcCcEEEEecC--chHHHHhhHHHHh-cCCCeecccCCcccccC
Confidence            45789999999998  5555565555544 23456788998876553

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.87  E-value=0.0031  Score=61.30  Aligned_cols=43  Identities=23%  Similarity=0.305  Sum_probs=36.8

Q ss_pred             ceEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHH
Q 004891          309 RKVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (725)
Q Consensus       309 ~kIaVI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i  351 (725)
                      |||++| |+ +-+|.++|..|++.|++|++.|++++.++...+.+
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i   45 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEI   45 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            588777 55 66999999999999999999999999988776544

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=95.87  E-value=0.028  Score=51.07  Aligned_cols=40  Identities=15%  Similarity=0.057  Sum_probs=35.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~  348 (725)
                      .+|.|+|+|.+|...++.+...|. +|++.|+++++++.++
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~   70 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE   70 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCccchhheecccccccccccccccccccccccc
Confidence            579999999999999999999998 7999999999987764

>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.71  E-value=0.062  Score=51.75  Aligned_cols=163  Identities=12%  Similarity=0.094  Sum_probs=102.2

Q ss_pred             EEeCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004891           18 ITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (725)
Q Consensus        18 i~l~~p~~--Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (725)
                      +.-|+|..  .+++.+-.+...+.++.++.. ++-.|.|.-. +.|..|.+-..          ........+++ .++.
T Consensus        71 vian~~~~~~G~~~~~~a~Kaa~fi~lc~~~-~iPli~l~Dt-pGf~~G~~~E~----------~g~~~~ga~~~-~a~a  137 (264)
T d1vrga2          71 IVANQPSVLAGVLDIDSSDKAARFIRFLDAF-NIPILTFVDT-PGYLPGVAQEH----------GGIIRHGAKLL-YAYS  137 (264)
T ss_dssp             EEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHH----------TTHHHHHHHHH-HHHH
T ss_pred             EEeccccccccchhhhhHHHHHHHHHHHHHh-CCceEEEeec-ccccccHHHHH----------HhHHHHHHHHH-HHHh
Confidence            33466654  679999999999988888764 5666666533 33555544321          22344555677 6799


Q ss_pred             hCCCcEEEEEcccccchhhHHhh----hcCEEEeeCCceEeCcccccCCCCCchhhchHhhh-h---C-H-HHHHHH--H
Q 004891           96 DCKKPIVAAVEGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL-V---G-L-SKAIEM--M  163 (725)
Q Consensus        96 ~~~kp~Iaav~G~a~GgG~~lal----acD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~-v---G-~-~~a~~l--~  163 (725)
                      ++..|.|..|-|.++|+|..-+.    .+|++++.+++.++.       ..+-+++..+-+. +   . . ..-.++  .
T Consensus       138 ~~~vP~i~viir~~yG~g~~am~~~~~~~d~~~awP~a~~~v-------m~pe~aa~v~~~~~l~~~~~~~~~~~~~~~~  210 (264)
T d1vrga2         138 EATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAV-------MGPEGAANIIFKREIEASSNPEETRRKLIEE  210 (264)
T ss_dssp             HCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTHHHHHHSSCHHHHHHHHHHH
T ss_pred             cCCCCEEEEEeCCcccHHhhhccCCccCCCeeeeccceeEEe-------cCHHHhhhhhhhhhhhhhhCcHHHHHHHHHH
Confidence            99999999999999998763332    488888887777664       3333333322211 1   0 0 000000  1


Q ss_pred             HcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHH
Q 004891          164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDI  200 (725)
Q Consensus       164 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l  200 (725)
                      +.-+.-++-.+.+.|++|.|+++.+.........+.+
T Consensus       211 ~~e~~~~~~~aa~~g~iD~VIdP~dTR~~L~~~Le~l  247 (264)
T d1vrga2         211 YKQQFANPYIAASRGYVDMVIDPRETRKYIMRALEVC  247 (264)
T ss_dssp             HHHHTSSHHHHHHTTSSSEECCGGGHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHcCCCCeeECHHHHHHHHHHHHHHH
Confidence            1112236788899999999999988777655555444

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=95.71  E-value=0.0018  Score=59.57  Aligned_cols=41  Identities=15%  Similarity=0.340  Sum_probs=36.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK  349 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~  349 (725)
                      ++|.|||+|-+|.+++..|.+.|. ++++++|+++.++++..
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~   60 (182)
T d1vi2a1          19 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALA   60 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHH
Confidence            689999999999999999999988 79999999988777653

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=95.66  E-value=0.02  Score=51.55  Aligned_cols=135  Identities=15%  Similarity=0.185  Sum_probs=77.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      .||+|||+|.||...+..+.+. +++++ ++|++++....                           .......+. +..
T Consensus         4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~---------------------------~~~~~~~~~~~~~   56 (170)
T d1f06a1           4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTK---------------------------TPVFDVADVDKHA   56 (170)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSS---------------------------SCEEEGGGGGGTT
T ss_pred             ceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccccc---------------------------cccccchhhhhhc
Confidence            4799999999999999988764 56655 67887653111                           112223333 456


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhcccCCCCcEEEEecCCCCCCCCeeeEecCCCCC
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS  465 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~  465 (725)
                      .++|+|++|.|.....  ++..   +.+..+.-+++..                         ++.           .++
T Consensus        57 ~~~D~Vvi~tp~~~h~--~~a~---~aL~aG~~vv~~~-------------------------~~~-----------~~~   95 (170)
T d1f06a1          57 DDVDVLFLCMGSATDI--PEQA---PKFAQFACTVDTY-------------------------DNH-----------RDI   95 (170)
T ss_dssp             TTCSEEEECSCTTTHH--HHHH---HHHTTTSEEECCC-------------------------CCG-----------GGH
T ss_pred             cccceEEEeCCCcccH--HHHH---HHHHCCCcEEEec-------------------------Ccc-----------ccC
Confidence            7899999999865432  2222   2233333222110                         010           123


Q ss_pred             HHHHHHHHHHHHHcCCeeEEE-cCCcchhhhhhhHHHHHHHHHHHHcC
Q 004891          466 AQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLG  512 (725)
Q Consensus       466 ~e~~~~~~~l~~~lGk~~v~v-~d~~Gfi~nRl~~a~~~Ea~~l~~~G  512 (725)
                      ++..+.+..+.+.-|+..++- +-.|||...|. .+....+-++.+.|
T Consensus        96 ~~~~~~l~~~A~~~~~~~~i~~g~~~~~~~~~~-~~~~~~~~~~~~~G  142 (170)
T d1f06a1          96 PRHRQVMNEAATAAGNVALVSTGRNPDFTASSQ-IAFGRAAHRMKQQG  142 (170)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCSCHHHHHHHHH-HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCceEEEeceeccchhHHHH-HHHHHHHHHHHhcC
Confidence            666677777777766554431 33556565554 33445566677766

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.65  E-value=0.006  Score=55.32  Aligned_cols=40  Identities=18%  Similarity=0.113  Sum_probs=36.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~  348 (725)
                      -||.|||+|..|..=+.....-|..|+++|++++++++..
T Consensus        30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~   69 (183)
T d1l7da1          30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVE   69 (183)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHH
T ss_pred             cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHH
Confidence            4899999999999999999999999999999999877654

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=95.56  E-value=0.0084  Score=53.43  Aligned_cols=98  Identities=19%  Similarity=0.239  Sum_probs=54.3

Q ss_pred             ceEEEEcCCCCcHH-HHHHHHHCC-CcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCC-CHHHHHHhhcCcccccCccc
Q 004891          309 RKVAVIGGGLMGSG-IATAHILNN-IYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKL-TQDKANNALKMLKGVLDYSE  384 (725)
Q Consensus       309 ~kIaVIG~G~mG~~-iA~~l~~~G-~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~  384 (725)
                      -||||||+|.+|.. +...+.+.. .+++ +.+++++.......         .+.+.- .....+..       .+...
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a---------~~~~i~~~~~~~d~l-------~~~~~   68 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARA---------QRMGVTTTYAGVEGL-------IKLPE   68 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHH---------HHTTCCEESSHHHHH-------HHSGG
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhh---------hhcCCcccccceeee-------eeccc
Confidence            47999999999986 455555443 3555 45887653221110         011110 00000000       00123


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004891          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (725)
Q Consensus       385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~  425 (725)
                      ..+.|+|+.|+|..........   ....+.++.++++++.
T Consensus        69 ~~~iDiVf~ATpag~h~~~~~~---~~aa~~G~~VID~s~a  106 (157)
T d1nvmb1          69 FADIDFVFDATSASAHVQNEAL---LRQAKPGIRLIDLTPA  106 (157)
T ss_dssp             GGGEEEEEECSCHHHHHHHHHH---HHHHCTTCEEEECSTT
T ss_pred             ccccCEEEEcCCchhHHHhHHH---HHHHHcCCEEEEcccc
Confidence            4679999999995555544432   2234678989999874

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=95.51  E-value=0.0053  Score=59.63  Aligned_cols=44  Identities=23%  Similarity=0.225  Sum_probs=37.4

Q ss_pred             ceEEEE-c-CCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHH
Q 004891          309 RKVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE  352 (725)
Q Consensus       309 ~kIaVI-G-~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~  352 (725)
                      .||++| | .+-||.++|..|++.|++|++.|++++.+++..+.++
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~   47 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELR   47 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            378877 4 4779999999999999999999999999888766553

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=95.38  E-value=0.0035  Score=60.56  Aligned_cols=36  Identities=22%  Similarity=0.263  Sum_probs=33.0

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChH
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e  342 (725)
                      ..+||+|||+|.-|.+.|..|+++|++|+++|++++
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            357999999999999999999999999999998754

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=95.34  E-value=0.043  Score=49.76  Aligned_cols=78  Identities=10%  Similarity=-0.011  Sum_probs=48.9

Q ss_pred             ceEEEEcCCCCcHH-HHHHHHHCC--CcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcc-
Q 004891          309 RKVAVIGGGLMGSG-IATAHILNN--IYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-  383 (725)
Q Consensus       309 ~kIaVIG~G~mG~~-iA~~l~~~G--~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-  383 (725)
                      -||||||+|.||.. ....+.+.+  ++|+ ++|+++++++...+.                      .+.....++++ 
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~----------------------~~~~~~~~~~~e   61 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKM----------------------VGNPAVFDSYEE   61 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHH----------------------HSSCEEESCHHH
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcc----------------------ccccceeeeeec
Confidence            37999999999987 466666543  3555 789999886654321                      12222345553 


Q ss_pred             cc--cCCCEEEEeccCChHHHHHHHHHHH
Q 004891          384 EF--KDVDMVIEAVIESVPLKQKIFSELE  410 (725)
Q Consensus       384 ~l--~~aDlVIeavpe~~~~k~~v~~~l~  410 (725)
                      .+  .+.|+|+.|.|.+..  .++...+.
T Consensus        62 ll~~~~id~v~I~tp~~~h--~~~~~~al   88 (181)
T d1zh8a1          62 LLESGLVDAVDLTLPVELN--LPFIEKAL   88 (181)
T ss_dssp             HHHSSCCSEEEECCCGGGH--HHHHHHHH
T ss_pred             cccccccceeecccccccc--cccccccc
Confidence            23  468999999985443  34444433

>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.34  E-value=0.055  Score=52.40  Aligned_cols=159  Identities=15%  Similarity=0.173  Sum_probs=100.0

Q ss_pred             eCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhC
Q 004891           20 LINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDC   97 (725)
Q Consensus        20 l~~p~~--Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   97 (725)
                      -|+|..  ..++.+-.+...+.++.++.. ++-.|.|.-. +.|..|-+-.+          ........+++ .++..+
T Consensus        76 an~~~~~~G~~~~~~~~Ka~rfi~lc~~~-~iPlv~l~dt-pGf~~G~~~E~----------~g~~~~ga~~~-~a~a~~  142 (271)
T d2a7sa2          76 ANQPTHFAGCLDINASEKAARFVRTCDCF-NIPIVMLVDV-PGFLPGTDQEY----------NGIIRRGAKLL-YAYGEA  142 (271)
T ss_dssp             EECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHH----------HCHHHHHHHHH-HHHHHC
T ss_pred             eccccccCCCcCHHHHHHHHHHHHHHHHh-CCceEEeech-hhhhhhccHHH----------hhHHHHHHHHH-HHHHhC
Confidence            356643  589999999999998888764 5777777543 33555544322          12334555677 679999


Q ss_pred             CCcEEEEEcccccchhhHHh----hhcCEEEeeCCceEeCcccccCCCCCchhhchHhh-hhCH-----------HHHHH
Q 004891           98 KKPIVAAVEGLALGGGLELA----MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPR-LVGL-----------SKAIE  161 (725)
Q Consensus        98 ~kp~Iaav~G~a~GgG~~la----lacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r-~vG~-----------~~a~~  161 (725)
                      ..|.|+.|-|.++|+|....    +.+|++++.++++++.       +++-++...+-+ .+..           .....
T Consensus       143 ~vP~isvi~~~~~G~~~~am~~~~~~~d~~~AwP~A~igv-------Mgpegaa~v~~~~~l~~~~~~~~~~~~~~~~~~  215 (271)
T d2a7sa2         143 TVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAV-------MGASGAVGFVYRQQLAEAAANGEDIDKLRLRLQ  215 (271)
T ss_dssp             CSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTTTTTTGGGTSSCCTTSSTTHHH
T ss_pred             CCCeEEEEeCCccchhhhhhcccccccceEEEecceeEee-------cCHHHHHHHHHHHhhhhhhhcccchHHHHHHHH
Confidence            99999999999999875433    2478888887777664       222232222221 1110           00111


Q ss_pred             HHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHH
Q 004891          162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWAL  198 (725)
Q Consensus       162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~  198 (725)
                      .-..-+.-++..+.+.|++|.|+++.+..+......+
T Consensus       216 ~e~~e~~~~p~~aa~~g~iD~VIdP~dTR~~L~~~L~  252 (271)
T d2a7sa2         216 QEYEDTLVNPYVAAERGYVDAVIPPSHTRGYIGTALR  252 (271)
T ss_dssp             HHHHTTTSBSHHHHHHTSSSEECCGGGHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHcCCCCeeECHHHHHHHHHHHHH
Confidence            1122333567788889999999999887665444443

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=95.31  E-value=0.049  Score=51.19  Aligned_cols=73  Identities=15%  Similarity=0.097  Sum_probs=46.5

Q ss_pred             eEEEEcCCCCcHH-HHHHHHHC-CCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcc-cc
Q 004891          310 KVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EF  385 (725)
Q Consensus       310 kIaVIG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l  385 (725)
                      ||||||+|.||.. +...+... +++|+ ++|+++++++...+.+          + +..       ..+...+|++ .+
T Consensus        35 riaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~----------~-i~~-------~~~~~~~d~~ell   96 (221)
T d1h6da1          35 GYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEY----------G-VDP-------RKIYDYSNFDKIA   96 (221)
T ss_dssp             EEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHT----------T-CCG-------GGEECSSSGGGGG
T ss_pred             EEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhh----------c-ccc-------ccccccCchhhhc
Confidence            7999999999975 45555544 66776 8899999877653211          1 110       0122235553 34


Q ss_pred             --cCCCEEEEeccCChH
Q 004891          386 --KDVDMVIEAVIESVP  400 (725)
Q Consensus       386 --~~aDlVIeavpe~~~  400 (725)
                        .+.|+|++|+|....
T Consensus        97 ~~~~iD~V~I~tp~~~H  113 (221)
T d1h6da1          97 KDPKIDAVYIILPNSLH  113 (221)
T ss_dssp             GCTTCCEEEECSCGGGH
T ss_pred             ccccceeeeeccchhhh
Confidence              468999999985554

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.29  E-value=0.033  Score=48.99  Aligned_cols=99  Identities=6%  Similarity=-0.036  Sum_probs=58.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhH--HcCCCCHHHHHHhhcCcccccCccccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLV--TRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~--~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      .+|-|+|.|.+|..++..|.+.|++|+++|.+++......+..   ....+  -.|..+..+.-          ....+.
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~---~~~~~~vi~Gd~~d~~~L----------~~a~i~   70 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQR---LGDNADVIPGDSNDSSVL----------KKAGID   70 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHH---HCTTCEEEESCTTSHHHH----------HHHTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHh---hcCCcEEEEccCcchHHH----------HHhccc
Confidence            3699999999999999999999999999999987644332211   00000  01111111000          003467


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEe
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT  421 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s  421 (725)
                      +||.||.+.+++...... ...+....+.-.+++-
T Consensus        71 ~a~~vi~~~~~d~~n~~~-~~~~r~~~~~~~iia~  104 (153)
T d1id1a_          71 RCRAILALSDNDADNAFV-VLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             TCSEEEECSSCHHHHHHH-HHHHHHHTSSSCEEEE
T ss_pred             cCCEEEEccccHHHHHHH-HHHHHHhCCCCceEEE
Confidence            899999998866543322 2233444444446654

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.065  Score=47.95  Aligned_cols=40  Identities=25%  Similarity=0.248  Sum_probs=36.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~  348 (725)
                      .+|.|+|+|.+|...++.+...|. +|++.|+++++++.++
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~   68 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK   68 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHH
Confidence            579999999999999999999998 7999999999988764

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.14  E-value=0.015  Score=58.35  Aligned_cols=89  Identities=16%  Similarity=0.056  Sum_probs=56.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC-C-CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891          309 RKVAVIGGGLMGSGIATAHILN-N-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~-G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      ++++|||+|.++...+..+... . -+|.+|++++++.+...++..       ..+            .....+..+++.
T Consensus       126 ~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~-------~~~------------~~~~~~~~~a~~  186 (320)
T d1omoa_         126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCE-------DRG------------ISASVQPAEEAS  186 (320)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHH-------HTT------------CCEEECCHHHHT
T ss_pred             cEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHH-------hcC------------Cccccchhhhhc
Confidence            5799999999999999888752 3 389999999998777654322       111            111123336678


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEec
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN  422 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~  422 (725)
                      +||+|+.|.+....+..      .+.+++++.|...
T Consensus       187 ~aDiV~taT~s~~P~~~------~~~l~~G~hv~~i  216 (320)
T d1omoa_         187 RCDVLVTTTPSRKPVVK------AEWVEEGTHINAI  216 (320)
T ss_dssp             SSSEEEECCCCSSCCBC------GGGCCTTCEEEEC
T ss_pred             cccEEEEeccCcccccc------hhhcCCCCeEeec
Confidence            89999888763332211      1245666655443

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.07  E-value=0.011  Score=57.18  Aligned_cols=43  Identities=30%  Similarity=0.325  Sum_probs=35.4

Q ss_pred             eEE-EEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHH
Q 004891          310 KVA-VIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE  352 (725)
Q Consensus       310 kIa-VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~  352 (725)
                      |++ |.|+ +-||.++|..|++.|++|++.|++++.+++..+.+.
T Consensus         6 K~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~   50 (251)
T d1vl8a_           6 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLT   50 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            455 4465 679999999999999999999999999887765543

>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=95.06  E-value=0.074  Score=51.14  Aligned_cols=162  Identities=15%  Similarity=0.186  Sum_probs=101.2

Q ss_pred             eCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhC
Q 004891           20 LINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDC   97 (725)
Q Consensus        20 l~~p~--~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   97 (725)
                      -|+|.  -.+++++-.+...+.++.++.. ++-.|.|.-. +.|-.|.+-.          .....+...+++ .++.++
T Consensus        71 a~~~~~~~G~~~~~~a~Ka~~fi~lc~~~-~iPli~l~d~-pGf~~G~~~E----------~~g~~~~ga~~~-~a~a~~  137 (263)
T d1xnya2          71 ANQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDV-PGFLPGVDQE----------HDGIIRRGAKLI-FAYAEA  137 (263)
T ss_dssp             EECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHH----------HTTHHHHHHHHH-HHHHHC
T ss_pred             ecccceecCCcchhhHHHHHHHHHHHHHh-CCceEEeecc-cccccchhHH----------HHhHHHHHHHHH-HHHHcc
Confidence            35664  3699999999999988888765 5666666533 2355554432          122344555677 679999


Q ss_pred             CCcEEEEEcccccchhhHHhh----hcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCH----------HHHHHHH
Q 004891           98 KKPIVAAVEGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL----------SKAIEMM  163 (725)
Q Consensus        98 ~kp~Iaav~G~a~GgG~~lal----acD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~----------~~a~~l~  163 (725)
                      ..|.|+.|-|.++|+|...+.    ..|+++|.+++.++.       +++-++...+-+.-..          ....+..
T Consensus       138 ~vPkitvi~~~~~Gga~~~m~~~~~~~d~~~awP~a~~gv-------m~pe~aa~il~~~~~~~a~~~~~~~~~~~~~~~  210 (263)
T d1xnya2         138 TVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQIAV-------MGAQGAVNILHRRTIADAGDDAEATRARLIQEY  210 (263)
T ss_dssp             CSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTHHHHHSCCTTCSSSHHHHHHHH
T ss_pred             CCCeEEEEecCccccceeccCCcccCCcEEEEcchhhhhc-------cCHHHHHHHHHHHHHhhhccchHHHHHHHHHHH
Confidence            999999999999998765433    368888887777764       3333333333221100          0000100


Q ss_pred             HcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHh
Q 004891          164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA  202 (725)
Q Consensus       164 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~  202 (725)
                       .-+..++..+...|.+|.|+++.+.........+.+..
T Consensus       211 -~~~~~~p~~aA~~g~iD~VIdP~dTR~~L~~~L~~l~~  248 (263)
T d1xnya2         211 -EDALLNPYTAAERGYVDAVIMPSDTRRHIVRGLRQLRT  248 (263)
T ss_dssp             -HHHHSSSHHHHHHTSSSEECCGGGHHHHHHHHHHHHTT
T ss_pred             -HHHhcCHHHHHHcccCCcccCHHHHHHHHHHHHHHHhc
Confidence             01123567788899999999999887666555555443

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=95.01  E-value=0.0061  Score=55.66  Aligned_cols=36  Identities=28%  Similarity=0.350  Sum_probs=33.1

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChH
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e  342 (725)
                      .-+||+|||+|..|.+-|..|++.||+|+++|.+++
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE   77 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence            347999999999999999999999999999999764

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.00  E-value=0.0041  Score=52.51  Aligned_cols=35  Identities=31%  Similarity=0.407  Sum_probs=32.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  343 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~  343 (725)
                      ++|.|||+|.+|.-+|..|.+.|.+|+++++.+.-
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~i   57 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI   57 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEeccee
Confidence            68999999999999999999999999999987653

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.99  E-value=0.014  Score=53.03  Aligned_cols=85  Identities=19%  Similarity=0.105  Sum_probs=46.8

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHC-CCcEEEE-eCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cc
Q 004891          308 VRKVAVIGGGLMGSGIATAHILN-NIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~-G~~V~~~-d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (725)
                      |-||||.|.|.||+.+++.+... .++|+.+ |+++........      ......+...+....-.-..+....+. +.
T Consensus         1 MIKVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~   74 (178)
T d1b7go1           1 MVNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAH------RRGIRIYVPQQSIKKFEESGIPVAGTVEDL   74 (178)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHH------HTTCCEECCGGGHHHHHTTTCCCCCCHHHH
T ss_pred             CeEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhc------ccCcceeccCccceeccccceecCCchhhh
Confidence            45899999999999999999976 4577654 565543222211      000000011111111111223333333 34


Q ss_pred             ccCCCEEEEeccCC
Q 004891          385 FKDVDMVIEAVIES  398 (725)
Q Consensus       385 l~~aDlVIeavpe~  398 (725)
                      ..++|+||||.|-.
T Consensus        75 ~~~vDiViecTG~f   88 (178)
T d1b7go1          75 IKTSDIVVDTTPNG   88 (178)
T ss_dssp             HHHCSEEEECCSTT
T ss_pred             hhcCCEEEECCCCc
Confidence            57899999999943

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=94.97  E-value=0.0048  Score=60.11  Aligned_cols=32  Identities=38%  Similarity=0.493  Sum_probs=30.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCh
Q 004891          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (725)
                      .|.|||+|.+|.++|..|++.|++|+++|+++
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            39999999999999999999999999999864

>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=94.89  E-value=0.095  Score=50.37  Aligned_cols=162  Identities=15%  Similarity=0.114  Sum_probs=100.9

Q ss_pred             CCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCC
Q 004891           21 INPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCK   98 (725)
Q Consensus        21 ~~p~--~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   98 (725)
                      |+|.  ..+++++-.+...+.++.++.. ++-.|.|.-. ..|..|-+-.+          ....+...+++ .++.++.
T Consensus        74 n~~~~~~G~~~~~~a~Kaarfi~lc~~~-~iPlv~l~D~-pGf~~G~~~E~----------~g~i~~ga~~~-~a~a~~~  140 (264)
T d1on3a2          74 NQPSVMSGCLDINASDKAAEFVNFCDSF-NIPLVQLVDV-PGFLPGVQQEY----------GGIIRHGAKML-YAYSEAT  140 (264)
T ss_dssp             ECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHH----------TTHHHHHHHHH-HHHHHCC
T ss_pred             ccchhcccccChHHHHHHHHHHHHHHhc-CCceEEEecc-ccccccHHHHH----------HHHHHHHHHHH-HHHHcCC
Confidence            5664  3789999999988888888764 5677777433 34655554321          22344555777 7799999


Q ss_pred             CcEEEEEcccccchhhHHhh----hcCEEEeeCCceEeCcccccCCCCCchhhchHhhh-hC---H---HHHHHH-HHcC
Q 004891           99 KPIVAAVEGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL-VG---L---SKAIEM-MLLS  166 (725)
Q Consensus        99 kp~Iaav~G~a~GgG~~lal----acD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~-vG---~---~~a~~l-~l~g  166 (725)
                      .|.|+.|-|.++|+|..-+.    .+|+++|.+++.++       .+++-++...+-+. +-   .   .+...+ -..-
T Consensus       141 vP~itvi~rkayG~g~~am~g~~~~~d~~~aWP~A~~~-------vMg~Egaa~v~~~~el~a~~~~~~~~~~~~~e~~~  213 (264)
T d1on3a2         141 VPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIA-------VMGAEGAANVIFRKEIKAADDPDAMRAEKIEEYQN  213 (264)
T ss_dssp             SCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeccccCccccccccccCChhheeeHHhhHhh-------hccHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHH
Confidence            99999999999998764443    35667666665554       44444444333221 10   0   001000 1111


Q ss_pred             CCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHh
Q 004891          167 KSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA  202 (725)
Q Consensus       167 ~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~  202 (725)
                      +.-++-.+.+.|.+|+|+++.+.........+.+..
T Consensus       214 ~~~~p~~aA~~g~iD~VIdP~eTR~~L~~aLe~~~~  249 (264)
T d1on3a2         214 AFNTPYVAAARGQVDDVIDPADTRRKIASALEMYAT  249 (264)
T ss_dssp             HHSSHHHHHHTTSSSEECCGGGHHHHHHHHHHHGGG
T ss_pred             HhcCHHHHHHcCCCCeeECHHHHHHHHHHHHHHHhc
Confidence            223567788899999999998876666555555443

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.011  Score=56.89  Aligned_cols=42  Identities=19%  Similarity=0.143  Sum_probs=35.1

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHH
Q 004891          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (725)
Q Consensus       310 kIaVI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i  351 (725)
                      |+++| |+ +-||..+|..|++.|++|+++|++++.++...+.+
T Consensus         8 kv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~   51 (244)
T d1yb1a_           8 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKC   51 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            55555 66 55999999999999999999999999988776543

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.82  E-value=0.0036  Score=53.40  Aligned_cols=34  Identities=21%  Similarity=0.448  Sum_probs=31.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e  342 (725)
                      +++.|||+|.+|.-+|..|++.|.+|+++++++.
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~   57 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ   57 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEeccc
Confidence            6899999999999999999999999999998763

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.81  E-value=0.0063  Score=55.88  Aligned_cols=34  Identities=18%  Similarity=0.145  Sum_probs=31.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE  342 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e  342 (725)
                      +||+|||+|..|...|..|++.|+ +|+++++++.
T Consensus         5 ~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           5 AKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            689999999999999999999999 5999998764

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.76  E-value=0.0098  Score=57.92  Aligned_cols=43  Identities=23%  Similarity=0.239  Sum_probs=37.1

Q ss_pred             ceEEEE--cCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHH
Q 004891          309 RKVAVI--GGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (725)
Q Consensus       309 ~kIaVI--G~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i  351 (725)
                      .||++|  |.+-+|.++|..|++.|++|++.+++++.+++..+.+
T Consensus         5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l   49 (264)
T d1spxa_           5 EKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQI   49 (264)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            478887  5588999999999999999999999999988776544

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=94.67  E-value=0.0047  Score=52.12  Aligned_cols=34  Identities=24%  Similarity=0.248  Sum_probs=31.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e  342 (725)
                      +||.|||+|..|.-+|..|++.|.+|+++++.+.
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   55 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA   55 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecch
Confidence            5899999999999999999999999999998753

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.65  E-value=0.005  Score=52.09  Aligned_cols=33  Identities=12%  Similarity=0.223  Sum_probs=31.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCh
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (725)
                      +||.|||+|.+|.-+|..|++.|.+|+++++.+
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             CEEEEECCchHHHHHHHHHHhccccceeeehhc
Confidence            689999999999999999999999999999864

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=94.61  E-value=0.012  Score=56.63  Aligned_cols=41  Identities=17%  Similarity=0.130  Sum_probs=34.7

Q ss_pred             ceEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 004891          309 RKVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (725)
Q Consensus       309 ~kIaVI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~  349 (725)
                      .|++|| |+ +-||.++|..|++.|++|++.|++++.++...+
T Consensus         4 gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~   46 (243)
T d1q7ba_           4 GKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISD   46 (243)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            367777 54 779999999999999999999999998877654

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.60  E-value=0.043  Score=49.08  Aligned_cols=40  Identities=25%  Similarity=0.205  Sum_probs=36.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~  348 (725)
                      .+|.|+|+|.+|...++.+...|.+|+++|+++++++.++
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~   67 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK   67 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHH
Confidence            4799999999999999999999999999999999987764

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=94.51  E-value=0.016  Score=56.09  Aligned_cols=42  Identities=26%  Similarity=0.326  Sum_probs=35.0

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHH
Q 004891          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (725)
Q Consensus       310 kIaVI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i  351 (725)
                      |++|| |+ +-||.++|..|++.|++|++.|++++.++...+.+
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~   48 (258)
T d1iy8a_           5 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAV   48 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            55555 55 67999999999999999999999999988765543

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.47  E-value=0.012  Score=57.01  Aligned_cols=44  Identities=18%  Similarity=0.237  Sum_probs=36.8

Q ss_pred             ceEEEE-c-CCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHH
Q 004891          309 RKVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE  352 (725)
Q Consensus       309 ~kIaVI-G-~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~  352 (725)
                      .|+++| | .+-+|.++|..|++.|++|++.+++++.++++.+.++
T Consensus        10 ~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~   55 (257)
T d1xg5a_          10 DRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECK   55 (257)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            366666 4 4889999999999999999999999999888765543

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.43  E-value=0.07  Score=52.52  Aligned_cols=43  Identities=23%  Similarity=0.305  Sum_probs=35.4

Q ss_pred             ceEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHH
Q 004891          309 RKVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (725)
Q Consensus       309 ~kIaVI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i  351 (725)
                      .|++|| |+ +-||.++|..|++.|++|++.+++++.++...+.+
T Consensus        12 gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el   56 (297)
T d1yxma1          12 GQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADEL   56 (297)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            356655 55 77999999999999999999999999988765543

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=94.40  E-value=0.018  Score=52.17  Aligned_cols=40  Identities=18%  Similarity=0.075  Sum_probs=35.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~  348 (725)
                      .+|.|+|+|.+|...++.+...|. +|++.|+++++++.++
T Consensus        29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~   69 (174)
T d1jqba2          29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAK   69 (174)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHH
T ss_pred             CEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHH
Confidence            469999999999999999988997 7999999999887764

>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.38  E-value=0.063  Score=53.05  Aligned_cols=69  Identities=16%  Similarity=0.156  Sum_probs=50.8

Q ss_pred             CCCcEEEEEcccccchhhHHhhhcCEEEeeCCceEeCcccccCCCCCchhhchHhhhhCHHHHHHHHHcCCCC--CHH--
Q 004891           97 CKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI--TSE--  172 (725)
Q Consensus        97 ~~kp~Iaav~G~a~GgG~~lalacD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~--~a~--  172 (725)
                      -..|+|++|.|.|+|+|..++..||++|+.+++.+.+.                    |+. +.+. .+|+.+  |.+  
T Consensus       239 ~~iptis~v~G~~vG~gAyl~~L~d~vIm~~~s~i~lt--------------------Gp~-~l~~-~lG~eVy~s~~eL  296 (333)
T d1uyra1         239 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILT--------------------GAP-AINK-MLGREVYTSNLQL  296 (333)
T ss_dssp             HHSCEEEEESSCEETHHHHHHHHTCCEEEETTCCEESS--------------------CHH-HHHH-HSSSCCCSCTHHH
T ss_pred             CCCCEEEEEeCCccccceeecccccEEEEeCCceEEee--------------------CHH-HHHH-hcCccccCChhHh
Confidence            56999999999999999999999999999988776543                    211 1121 245544  333  


Q ss_pred             ----HHHHcCCcceecCcc
Q 004891          173 ----EGWKLGLIDAVVTSE  187 (725)
Q Consensus       173 ----eA~~~Glv~~vv~~~  187 (725)
                          -..+.|++|.+++.|
T Consensus       297 GG~~i~~~nGv~h~~a~dd  315 (333)
T d1uyra1         297 GGTQIMYNNGVSHLTAVDD  315 (333)
T ss_dssp             HSHHHHHHHTSSSEEESSH
T ss_pred             CCHhHHhhCCCceEEeCCH
Confidence                335789999999765

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.36  E-value=0.0092  Score=59.73  Aligned_cols=34  Identities=18%  Similarity=0.312  Sum_probs=32.0

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCh
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (725)
                      .+||+|||+|.-|.+.|..|++.|++|+++|.+.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~   35 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD   35 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCC
Confidence            4799999999999999999999999999999875

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=94.32  E-value=0.011  Score=57.28  Aligned_cols=42  Identities=26%  Similarity=0.350  Sum_probs=35.0

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHH
Q 004891          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (725)
Q Consensus       310 kIaVI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i  351 (725)
                      |+++| |+ +-||.++|..|++.|++|++.|++++.+++..+.+
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~   49 (260)
T d1zema1           6 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASV   49 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            45555 66 66999999999999999999999999988776543

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.32  E-value=0.015  Score=56.31  Aligned_cols=42  Identities=26%  Similarity=0.370  Sum_probs=36.2

Q ss_pred             eEEEE--cCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHH
Q 004891          310 KVAVI--GGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (725)
Q Consensus       310 kIaVI--G~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i  351 (725)
                      |+++|  |.+-+|.++|..|++.|++|++.+++++.+++..+.+
T Consensus        12 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l   55 (255)
T d1fmca_          12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEI   55 (255)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            67777  4578999999999999999999999999988776554

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.29  E-value=0.013  Score=49.84  Aligned_cols=35  Identities=29%  Similarity=0.374  Sum_probs=32.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChH
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e  342 (725)
                      .++|+|||+|.+|.-+|..|++.|.+|+++++.+.
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~   64 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR   64 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCEEEEECChHHHHHHHHHhhccceEEEEEEecCc
Confidence            36899999999999999999999999999998754

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.29  E-value=0.029  Score=46.59  Aligned_cols=36  Identities=17%  Similarity=0.291  Sum_probs=33.0

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHH
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  343 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~  343 (725)
                      ..||+|||+|..|.-+|....+-|++|+++|.+++.
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence            358999999999999999999999999999998764

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.26  E-value=0.007  Score=46.82  Aligned_cols=36  Identities=25%  Similarity=0.303  Sum_probs=32.7

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHH
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  343 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~  343 (725)
                      |++|+|||.|-.|.-++....+-|++|+++|.+++.
T Consensus         1 ~k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~   36 (78)
T d3etja2           1 MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             CEEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence            589999999999999999999999999999987543

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=94.12  E-value=0.01  Score=57.95  Aligned_cols=33  Identities=30%  Similarity=0.463  Sum_probs=31.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCh
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (725)
                      |||+|||+|.-|.+-|..|+++|++|+++|.++
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            689999999999999999999999999999764

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.11  E-value=0.012  Score=56.74  Aligned_cols=40  Identities=28%  Similarity=0.286  Sum_probs=33.3

Q ss_pred             ceEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891          309 RKVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~  348 (725)
                      .|+++| |+ +-||.++|..|++.|++|++.|++++.++...
T Consensus         6 GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~   47 (250)
T d1ydea1           6 GKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALE   47 (250)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            355555 55 88999999999999999999999998876643

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.04  E-value=0.016  Score=49.15  Aligned_cols=36  Identities=22%  Similarity=0.488  Sum_probs=33.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL  344 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~  344 (725)
                      ++|.|||+|.+|.-+|..|++.|.+|+++++++.-+
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l   66 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLM   66 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT
T ss_pred             CeEEEECcchhHHHHHHHhhcccceEEEEeeccccc
Confidence            689999999999999999999999999999987544

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.97  E-value=0.0091  Score=50.99  Aligned_cols=34  Identities=12%  Similarity=0.133  Sum_probs=31.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e  342 (725)
                      ++|+|||+|.+|.-+|..|++.|.+|+++++++.
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~   56 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK   56 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc
Confidence            6899999999999999999999999999999753

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.92  E-value=0.0098  Score=58.37  Aligned_cols=34  Identities=26%  Similarity=0.238  Sum_probs=32.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHH
Q 004891          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  343 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~  343 (725)
                      +|.|||+|.-|..+|..|+++|++|+++|++++.
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~   37 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPD   37 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            7999999999999999999999999999998753

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=93.90  E-value=0.15  Score=49.77  Aligned_cols=42  Identities=29%  Similarity=0.321  Sum_probs=36.1

Q ss_pred             eEEEE--cCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHH
Q 004891          310 KVAVI--GGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (725)
Q Consensus       310 kIaVI--G~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i  351 (725)
                      |++||  |.|-+|.++|..|++.|++|++.|++.+.++...+.+
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l   69 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQI   69 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHH
Confidence            67766  5699999999999999999999999999888766544

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=93.87  E-value=0.011  Score=57.70  Aligned_cols=33  Identities=33%  Similarity=0.434  Sum_probs=30.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCh
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (725)
                      +||+|||+|.-|.+.|..|+++|++|+++|.++
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            479999999999999999999999999999864

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=93.87  E-value=0.013  Score=57.01  Aligned_cols=42  Identities=29%  Similarity=0.373  Sum_probs=34.8

Q ss_pred             ceEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHH
Q 004891          309 RKVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  350 (725)
Q Consensus       309 ~kIaVI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~  350 (725)
                      .|+++| |+ +-+|.++|..|++.|++|++.|++++.+++..+.
T Consensus         6 gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~   49 (268)
T d2bgka1           6 DKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNN   49 (268)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            356666 54 7799999999999999999999999988776543

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=93.86  E-value=0.041  Score=48.08  Aligned_cols=98  Identities=20%  Similarity=0.270  Sum_probs=57.3

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHC-CC---cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcc
Q 004891          309 RKVAVIGG-GLMGSGIATAHILN-NI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~-G~---~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (725)
                      +||||||+ |..|.-+.+.|.++ .|   ++..+..+... .+           ....+.        ....+....+.+
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~-gk-----------~~~~~~--------~~~~~~~~~~~~   60 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIG-VP-----------APNFGK--------DAGMLHDAFDIE   60 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCS-SB-----------CCCSSS--------CCCBCEETTCHH
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccc-cc-----------ccccCC--------cceeeecccchh
Confidence            47999998 99999999877764 33   44444433211 00           000000        000111112334


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 004891          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  429 (725)
Q Consensus       384 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~  429 (725)
                      .++++|+||.|+|  -.+..++..++.+. ...++|++++|.+.+.
T Consensus        61 ~~~~~DvvF~alp--~~~s~~~~~~l~~~-g~~~~VIDlSsdfR~~  103 (147)
T d1mb4a1          61 SLKQLDAVITCQG--GSYTEKVYPALRQA-GWKGYWIDAASTLRMD  103 (147)
T ss_dssp             HHTTCSEEEECSC--HHHHHHHHHHHHHT-TCCSEEEESSSTTTTC
T ss_pred             hhccccEEEEecC--chHHHHHhHHHHHc-CCceEEEeCCcccccc
Confidence            5789999999999  55555666666543 3446788998887644

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.86  E-value=0.021  Score=55.79  Aligned_cols=42  Identities=21%  Similarity=0.251  Sum_probs=35.3

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHH
Q 004891          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (725)
Q Consensus       310 kIaVI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i  351 (725)
                      |++|| |+ +-||.++|..|++.|++|++.|++++.+++..+.+
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i   48 (274)
T d1xhla_           5 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQI   48 (274)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            56666 44 77999999999999999999999999988776544

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.86  E-value=0.0092  Score=50.47  Aligned_cols=34  Identities=24%  Similarity=0.344  Sum_probs=31.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e  342 (725)
                      ++|.|||+|.+|.-+|..|++.|.+|+++.+++.
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence            7899999999999999999999999999997653

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=93.85  E-value=0.019  Score=55.57  Aligned_cols=43  Identities=14%  Similarity=0.163  Sum_probs=35.6

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHH
Q 004891          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE  352 (725)
Q Consensus       310 kIaVI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~  352 (725)
                      |+++| |+ +-+|.++|..|++.|++|++.+++++.+++..+.+.
T Consensus        10 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~   54 (260)
T d1h5qa_          10 KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVG   54 (260)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            66666 55 669999999999999999999999988877665543

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=93.84  E-value=0.062  Score=47.93  Aligned_cols=40  Identities=20%  Similarity=0.045  Sum_probs=35.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~  348 (725)
                      .+|.|+|+|.+|...++.+...|.+|++.|.++++.+.++
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~   71 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAK   71 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH
T ss_pred             CEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHh
Confidence            5799999999999999888889999999999998876553

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.82  E-value=0.12  Score=49.47  Aligned_cols=42  Identities=19%  Similarity=0.126  Sum_probs=35.7

Q ss_pred             ceEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHH
Q 004891          309 RKVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  350 (725)
Q Consensus       309 ~kIaVI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~  350 (725)
                      .||++| |+ +-||.++|..|++.|++|++.|++++.++...+.
T Consensus        10 nKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~   53 (251)
T d2c07a1          10 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDE   53 (251)
T ss_dssp             SCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHH
Confidence            577777 55 7799999999999999999999999988776543

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=93.79  E-value=0.03  Score=56.18  Aligned_cols=71  Identities=23%  Similarity=0.222  Sum_probs=49.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH-CCC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-ccc
Q 004891          309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~-~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  385 (725)
                      ++++|||+|.++..-+..+.. .++ +|.+||+++++.++..+++.       +...+          .+...++. +++
T Consensus       129 ~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~-------~~~g~----------~v~~~~s~~eav  191 (340)
T d1x7da_         129 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLK-------EYSGL----------TIRRASSVAEAV  191 (340)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHT-------TCTTC----------EEEECSSHHHHH
T ss_pred             ceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhh-------hccCC----------CceecCCHHHHH
Confidence            579999999999988877754 344 89999999998877654321       11000          23345555 678


Q ss_pred             cCCCEEEEecc
Q 004891          386 KDVDMVIEAVI  396 (725)
Q Consensus       386 ~~aDlVIeavp  396 (725)
                      ++||+|+.|.+
T Consensus       192 ~~ADIi~t~Ta  202 (340)
T d1x7da_         192 KGVDIITTVTA  202 (340)
T ss_dssp             TTCSEEEECCC
T ss_pred             hcCCceeeccc
Confidence            88999988774

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=93.77  E-value=0.077  Score=53.12  Aligned_cols=40  Identities=18%  Similarity=0.104  Sum_probs=35.0

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 004891          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (725)
Q Consensus       308 ~~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~  347 (725)
                      -++|.|.|+ |.+|+.++..|+++|++|++..|+.+..+..
T Consensus        11 gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~   51 (342)
T d1y1pa1          11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANL   51 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             cCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHH
Confidence            478999987 9999999999999999999999998775543

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.64  E-value=0.0079  Score=50.52  Aligned_cols=34  Identities=24%  Similarity=0.363  Sum_probs=31.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e  342 (725)
                      +++.|||+|..|.-+|..|++.|++|+++++.+.
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~   55 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER   55 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccceEEEeeecc
Confidence            6899999999999999999999999999998654

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=93.64  E-value=0.11  Score=49.79  Aligned_cols=41  Identities=22%  Similarity=0.175  Sum_probs=34.5

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHH
Q 004891          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  350 (725)
Q Consensus       310 kIaVI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~  350 (725)
                      |++|| |+ +-||.++|..|++.|++|++.|++++.++...+.
T Consensus         9 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~   51 (259)
T d2ae2a_           9 CTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQ   51 (259)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            55555 65 6799999999999999999999999998876544

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.63  E-value=0.017  Score=49.01  Aligned_cols=34  Identities=24%  Similarity=0.311  Sum_probs=31.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e  342 (725)
                      ++|.|||+|.+|.-+|..|++.|++|+++++++.
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence            5799999999999999999999999999998764

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.61  E-value=0.095  Score=49.90  Aligned_cols=39  Identities=28%  Similarity=0.291  Sum_probs=33.1

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (725)
Q Consensus       310 kIaVI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~  348 (725)
                      |+++| |+ +-||.++|..|++.|++|++.|++++.++...
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~   47 (244)
T d1nffa_           7 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMA   47 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            56655 65 67999999999999999999999998876654

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.59  E-value=0.017  Score=49.04  Aligned_cols=32  Identities=16%  Similarity=0.038  Sum_probs=30.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN  340 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~  340 (725)
                      ++++|||+|.+|.-+|..|.+.|.+|+++.++
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            57999999999999999999999999999876

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.57  E-value=0.068  Score=45.54  Aligned_cols=80  Identities=14%  Similarity=0.156  Sum_probs=57.7

Q ss_pred             ceEEEEcC----CCCcHHHHHHHHHCC-CcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcc
Q 004891          309 RKVAVIGG----GLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (725)
Q Consensus       309 ~kIaVIG~----G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (725)
                      ++|+|||+    |.+|..+.++|...| ++|+.++.+.+.+                             ..+.+..+++
T Consensus         9 ksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i-----------------------------~G~~~y~sl~   59 (129)
T d2csua1           9 KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-----------------------------QGVKAYKSVK   59 (129)
T ss_dssp             SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-----------------------------TTEECBSSTT
T ss_pred             CeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc-----------------------------CCeEeecchh
Confidence            68999997    788888999987766 6898888765331                             2344556665


Q ss_pred             cc-cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEE
Q 004891          384 EF-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCIL  419 (725)
Q Consensus       384 ~l-~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii  419 (725)
                      ++ ...|+++.++|  .+...++++++.+.=-+..++
T Consensus        60 dlp~~vDlvvi~vp--~~~~~~~~~~~~~~g~~~~vi   94 (129)
T d2csua1          60 DIPDEIDLAIIVVP--KRFVKDTLIQCGEKGVKGVVI   94 (129)
T ss_dssp             SCSSCCSEEEECSC--HHHHHHHHHHHHHHTCCEEEE
T ss_pred             hcCCCCceEEEecC--hHHhHHHHHHHHHcCCCEEEE
Confidence            65 46899999999  777778888876653343444

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=93.57  E-value=0.076  Score=50.90  Aligned_cols=40  Identities=20%  Similarity=0.234  Sum_probs=33.7

Q ss_pred             ceEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891          309 RKVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~  348 (725)
                      .|++|| |+ +-||.++|..|++.|++|++.|++++.+++..
T Consensus         6 gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~   47 (253)
T d1hxha_           6 GKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLA   47 (253)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            366666 54 67999999999999999999999998877654

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.56  E-value=0.16  Score=48.96  Aligned_cols=42  Identities=21%  Similarity=0.211  Sum_probs=35.3

Q ss_pred             ceEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHH
Q 004891          309 RKVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  350 (725)
Q Consensus       309 ~kIaVI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~  350 (725)
                      .|++|| |+ +-||.++|..|++.|++|++.|++++.+++..+.
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~   48 (272)
T d1xkqa_           5 NKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQI   48 (272)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            356666 44 7899999999999999999999999998876543

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=93.54  E-value=0.023  Score=51.14  Aligned_cols=35  Identities=23%  Similarity=0.369  Sum_probs=27.6

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCC-CcEEE-EeCChH
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNN-IYVVL-KEVNSE  342 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G-~~V~~-~d~~~e  342 (725)
                      |.||||-|.|.+|+.+.+.+...+ .+|+. -|+++.
T Consensus         1 M~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~   37 (171)
T d1cf2o1           1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPD   37 (171)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCS
T ss_pred             CeEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcH
Confidence            679999999999999999888765 56654 455543

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.51  E-value=0.19  Score=43.17  Aligned_cols=86  Identities=13%  Similarity=0.042  Sum_probs=62.0

Q ss_pred             ceEEEEcC----CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccc
Q 004891          309 RKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (725)
Q Consensus       309 ~kIaVIG~----G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (725)
                      ++|+|||+    +..|..++..|.+.||+|+.++...+.+                             ....+..++++
T Consensus        20 ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i-----------------------------~G~~~~~sl~d   70 (139)
T d2d59a1          20 KKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEV-----------------------------LGRKCYPSVLD   70 (139)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----------------------------TTEECBSSGGG
T ss_pred             CeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccccc-----------------------------CCCcccccccc
Confidence            68999997    5689999999999999999888764321                             12344556655


Q ss_pred             c-cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 004891          385 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID  427 (725)
Q Consensus       385 l-~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~  427 (725)
                      + ...|+|+.++|  .+...++++++.+. ....+++ ..++..
T Consensus        71 lp~~iD~v~i~vp--~~~~~~~~~e~~~~-g~k~v~~-~~G~~~  110 (139)
T d2d59a1          71 IPDKIEVVDLFVK--PKLTMEYVEQAIKK-GAKVVWF-QYNTYN  110 (139)
T ss_dssp             CSSCCSEEEECSC--HHHHHHHHHHHHHH-TCSEEEE-CTTCCC
T ss_pred             cCccceEEEEEeC--HHHHHHHHHHHHHh-CCCEEEE-eccccC
Confidence            5 46899999999  78888888887665 3445443 444444

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.44  E-value=0.008  Score=51.21  Aligned_cols=36  Identities=28%  Similarity=0.363  Sum_probs=32.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL  344 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~  344 (725)
                      +++.|||+|.+|.-+|..|.+.|.+|+++++++.-+
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l   61 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV   61 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC
Confidence            689999999999999999999999999999876543

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.39  E-value=0.02  Score=49.29  Aligned_cols=36  Identities=33%  Similarity=0.575  Sum_probs=32.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL  344 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~  344 (725)
                      ++|.|||+|.+|.-+|..|++.|.+|+++++.+.-+
T Consensus        36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l   71 (133)
T d1q1ra2          36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVL   71 (133)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred             CEEEEECCchHHHHHHHHHHhhCcceeeeeeccccc
Confidence            689999999999999999999999999999876543

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.34  E-value=0.016  Score=58.17  Aligned_cols=36  Identities=33%  Similarity=0.376  Sum_probs=32.1

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCC--CcEEEEeCChH
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSE  342 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G--~~V~~~d~~~e  342 (725)
                      .|+||+|||+|.-|...|..|++.|  ++|++++++..
T Consensus         3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            5899999999999999999998876  59999999853

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=93.33  E-value=0.042  Score=53.04  Aligned_cols=42  Identities=33%  Similarity=0.318  Sum_probs=32.9

Q ss_pred             ceEEEE-c-CCCCcHHHHHHHHHCCCcEEEEeCC-hHHHHHHHHH
Q 004891          309 RKVAVI-G-GGLMGSGIATAHILNNIYVVLKEVN-SEYLLKGIKT  350 (725)
Q Consensus       309 ~kIaVI-G-~G~mG~~iA~~l~~~G~~V~~~d~~-~e~~~~~~~~  350 (725)
                      .|+++| | .+-||.++|..|++.|++|++.+++ ++.++...+.
T Consensus         4 gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~   48 (260)
T d1x1ta1           4 GKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAG   48 (260)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHH
Confidence            367777 4 4679999999999999999999997 4556655443

>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=93.30  E-value=0.6  Score=45.33  Aligned_cols=161  Identities=11%  Similarity=0.104  Sum_probs=98.1

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEE
Q 004891           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (725)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav  105 (725)
                      -+++++-.+...+.++.++.. ++-+|.|.-. ..|-.|-+-.          .....+...+++ .++.++..|.|+.|
T Consensus        97 G~l~~~~a~K~~rfi~lc~~~-~iPlv~l~D~-pGf~~g~~~E----------~~g~~r~ga~~~-~a~~~~~VP~isvi  163 (299)
T d1pixa3          97 GKLYRQGLVKMNEFVTLCARD-RLPIVWIQDT-TGIDVGNDAE----------KAELLGLGQSLI-YSIQTSHIPQFEIT  163 (299)
T ss_dssp             TEECHHHHHHHHHHHHHHHHT-TCCEEEEECC-CEECCSHHHH----------HTTHHHHHHHHH-HHHHTCCCCEEEEE
T ss_pred             CccCHHHHHHHHHHHHHHHHc-CCeEEEEEeC-CCcccchHHH----------hhhHHHHHHHHH-HHHHhhcceeEEEE
Confidence            468899999999999888765 5666666432 3355553321          122344555677 67899999999999


Q ss_pred             cccccchhhHHhhh----cCEEEeeCCceEeCcccccCCCCCchhhchHh-hhhCHH------------HHHHHHH-cCC
Q 004891          106 EGLALGGGLELAMG----CHARIAAPKTQLGLPELTLGVIPGFGGTQRLP-RLVGLS------------KAIEMML-LSK  167 (725)
Q Consensus       106 ~G~a~GgG~~lala----cD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~-r~vG~~------------~a~~l~l-~g~  167 (725)
                      -|.++|+|...+..    .|++++     +..|...+|.+++-++...+- +.+...            .-.++.- .-+
T Consensus       164 ~r~~~G~a~~am~g~~~~~~~~~~-----~awP~aeigvMg~E~aa~vl~~~el~~~~~~~~~~~e~~e~~~~~~~~~~~  238 (299)
T d1pixa3         164 LRKGTAAAHYVLGGPQGNDTNAFS-----IGTAATEIAVMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQAFYT  238 (299)
T ss_dssp             CSEEETTHHHHTTCTTCTTTEEEE-----EECTTCEEESSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred             ecccccccccccccCccCccccee-----cCCCccccccccchhhheeehhhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            99999988654332    343331     233555566665544444332 222110            0011110 012


Q ss_pred             CCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcC
Q 004891          168 SITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR  204 (725)
Q Consensus       168 ~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~  204 (725)
                      ..++-.+.+.|+||+|+++.+.........+.+.+.+
T Consensus       239 ~~sp~~aAs~~~iD~IIDP~dTR~~L~~~Le~~~~~~  275 (299)
T d1pixa3         239 KSRPKVCAELGLVDEIVDMNKIRGYVEAFTEAAYQNP  275 (299)
T ss_dssp             TTSHHHHHHHTSSSEECCTTTHHHHHHHHHHHHTTSC
T ss_pred             hcCHHHHHHhCCcCeeECHHHHHHHHHHHHHHHHhCc
Confidence            3477788899999999999888777766665544443

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=93.18  E-value=0.22  Score=47.70  Aligned_cols=41  Identities=20%  Similarity=0.090  Sum_probs=34.8

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~  349 (725)
                      |+|-|.|+ +-||.++|..|++.|++|++.+++++.++.+.+
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~   48 (258)
T d1ae1a_           7 TTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLE   48 (258)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            45666665 779999999999999999999999988877654

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.16  E-value=0.15  Score=49.19  Aligned_cols=40  Identities=23%  Similarity=0.210  Sum_probs=33.7

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 004891          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (725)
Q Consensus       310 kIaVI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~  349 (725)
                      |+++| |+ +-||.++|..|++.|++|++.+|+++.+++..+
T Consensus        15 K~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~   56 (269)
T d1xu9a_          15 KKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVS   56 (269)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            45544 66 569999999999999999999999999887654

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.07  E-value=0.023  Score=56.11  Aligned_cols=35  Identities=29%  Similarity=0.305  Sum_probs=31.9

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCh
Q 004891          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (725)
Q Consensus       307 ~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (725)
                      +-.||+|||+|.-|.+-|..|+++|++|++++.+.
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            34689999999999999999999999999999764

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=93.06  E-value=0.019  Score=56.55  Aligned_cols=32  Identities=16%  Similarity=0.491  Sum_probs=29.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCh
Q 004891          310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~  341 (725)
                      +|.|||+|.+|.++|..|++.|. +|+++|++.
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            69999999999999999999996 799999864

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.01  E-value=0.11  Score=43.23  Aligned_cols=80  Identities=23%  Similarity=0.223  Sum_probs=57.6

Q ss_pred             ceEEEEcC----CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccc
Q 004891          309 RKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (725)
Q Consensus       309 ~kIaVIG~----G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (725)
                      ++|+|||+    +..|..+...|.+.||+|+.++++.+.+                             ..+.+..++++
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i-----------------------------~G~~~y~sl~~   52 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----------------------------EGLKCYRSVRE   52 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----------------------------TTEECBSSGGG
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc-----------------------------cCccccccchh
Confidence            68999996    6779999999999999998887664331                             12444556655


Q ss_pred             c-cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEE
Q 004891          385 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  420 (725)
Q Consensus       385 l-~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~  420 (725)
                      + ...|+++.++|  .+...+++++..+. ....++.
T Consensus        53 lp~~~D~vvi~vp--~~~~~~~l~~~~~~-g~k~v~~   86 (116)
T d1y81a1          53 LPKDVDVIVFVVP--PKVGLQVAKEAVEA-GFKKLWF   86 (116)
T ss_dssp             SCTTCCEEEECSC--HHHHHHHHHHHHHT-TCCEEEE
T ss_pred             ccccceEEEEEeC--HHHHHHHHHHHHhc-CCceEEe
Confidence            5 45799999999  77777888876553 3334443

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=92.90  E-value=0.019  Score=48.37  Aligned_cols=35  Identities=14%  Similarity=0.093  Sum_probs=32.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  343 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~  343 (725)
                      ++|+|||+|.+|.-+|..|++.|.+|+++++.+.-
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~   57 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPL   57 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchhheEeeccchh
Confidence            68999999999999999999999999999987643

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=92.90  E-value=0.02  Score=54.20  Aligned_cols=32  Identities=25%  Similarity=0.387  Sum_probs=29.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCh
Q 004891          310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~  341 (725)
                      ||+|||+|.-|.+.|..|+++|+ +|+++|.++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            79999999999999999999997 699999864

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.89  E-value=0.055  Score=51.66  Aligned_cols=40  Identities=23%  Similarity=0.179  Sum_probs=33.7

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 004891          310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (725)
Q Consensus       310 kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~  349 (725)
                      ++-|.|+ +-||.++|..|++.|++|++.|++++.++...+
T Consensus         9 ~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~   49 (244)
T d1pr9a_           9 RVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVR   49 (244)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence            4555566 779999999999999999999999998877654

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.84  E-value=0.19  Score=47.99  Aligned_cols=40  Identities=30%  Similarity=0.312  Sum_probs=34.1

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 004891          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (725)
Q Consensus       310 kIaVI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~  349 (725)
                      |+++| |+ +-+|.++|..|++.|++|++.|++++.+++..+
T Consensus         4 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~   45 (254)
T d2gdza1           4 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKA   45 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            56655 65 679999999999999999999999998877654

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=92.83  E-value=0.038  Score=52.77  Aligned_cols=39  Identities=15%  Similarity=0.168  Sum_probs=32.8

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (725)
Q Consensus       310 kIaVI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~  348 (725)
                      |+++| |+ +-+|.++|..|++.|++|++.|++++.++...
T Consensus         6 K~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~   46 (242)
T d1ulsa_           6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAA   46 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            55555 65 66999999999999999999999998877654

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.73  E-value=0.054  Score=51.64  Aligned_cols=40  Identities=20%  Similarity=0.124  Sum_probs=33.1

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 004891          310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (725)
Q Consensus       310 kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~  349 (725)
                      ++-|.|+ +-+|.++|..|++.|++|++.+++++.+++..+
T Consensus         7 ~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~   47 (242)
T d1cyda_           7 RALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAK   47 (242)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            4445566 679999999999999999999999988776544

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=92.70  E-value=0.1  Score=48.98  Aligned_cols=40  Identities=18%  Similarity=0.211  Sum_probs=36.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~  348 (725)
                      ++|+|-|.|.+|..+|..|.+.|..|++.|.++..++...
T Consensus        40 ~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~   79 (230)
T d1leha1          40 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAV   79 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHH
Confidence            6899999999999999999999999999999998876653

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.63  E-value=0.057  Score=48.25  Aligned_cols=73  Identities=19%  Similarity=0.222  Sum_probs=55.0

Q ss_pred             ceEEEEcCC-CCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G-~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      ++|.|||-+ ..|.++|..|++.|..|++++.+...+.                                     +.+++
T Consensus        40 k~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~-------------------------------------~~~~~   82 (170)
T d1a4ia1          40 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLD-------------------------------------EEVNK   82 (170)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH-------------------------------------HHHTT
T ss_pred             ceEEEEecCCccchHHHHHHHhccCceEEEecccccHH-------------------------------------HHHhh
Confidence            689999995 5899999999999999999987643321                                     23567


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~  425 (725)
                      +|+||.++...--++       ...+++++++++...+
T Consensus        83 aDivi~a~G~~~~i~-------~~~vk~g~iviDvgi~  113 (170)
T d1a4ia1          83 GDILVVATGQPEMVK-------GEWIKPGAIVIDCGIN  113 (170)
T ss_dssp             CSEEEECCCCTTCBC-------GGGSCTTCEEEECCCB
T ss_pred             ccchhhccccccccc-------cccccCCCeEeccCcc
Confidence            999999986433332       3467899998876443

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.60  E-value=0.0068  Score=57.55  Aligned_cols=29  Identities=28%  Similarity=0.305  Sum_probs=25.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEE
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLK  337 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~  337 (725)
                      +||+|||+|.+|.+.|..|+++|++|+++
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~   29 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQP   29 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSS
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEE
Confidence            47999999999999999999999875443

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=92.48  E-value=0.06  Score=47.86  Aligned_cols=104  Identities=16%  Similarity=0.068  Sum_probs=59.0

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-c
Q 004891          308 VRKVAVIGG-GLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (725)
Q Consensus       308 ~~kIaVIG~-G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (725)
                      ..||+|+|+ |.||+.++..+.+. +++++ ++|+.....-            ....+.+...    ....+..+++. +
T Consensus         4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~------------g~d~~~~~~~----~~~~~~~~~~~~~   67 (162)
T d1diha1           4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLL------------GSDAGELAGA----GKTGVTVQSSLDA   67 (162)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTC------------SCCTTCSSSS----SCCSCCEESCSTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhc------------cchhhhhhcc----ccCCceeeccHHH
Confidence            468999996 99999999988875 66654 4555322100            0000100000    00123344555 4


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHh
Q 004891          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG  432 (725)
Q Consensus       384 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~  432 (725)
                      ....+|+||+-..  ++...+.++...   ..+.-+++.|+++...++.
T Consensus        68 ~~~~~DViIDFs~--p~~~~~~~~~a~---~~~~~~ViGTTG~~~~~~~  111 (162)
T d1diha1          68 VKDDFDVFIDFTR--PEGTLNHLAFCR---QHGKGMVIGTTGFDEAGKQ  111 (162)
T ss_dssp             TTTSCSEEEECSC--HHHHHHHHHHHH---HTTCEEEECCCCCCHHHHH
T ss_pred             HhcccceEEEecc--HHHHHHHHHHHH---hccceeEEecCCCcHHHHH
Confidence            5688999998765  554445444333   3455566778887765443

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.39  E-value=0.024  Score=56.07  Aligned_cols=34  Identities=24%  Similarity=0.281  Sum_probs=31.6

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCh
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (725)
                      |..|.|||+|.-|.++|..|++.|++|+++|.+.
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~   34 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRN   34 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence            5689999999999999999999999999999875

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=92.35  E-value=0.028  Score=54.57  Aligned_cols=31  Identities=23%  Similarity=0.323  Sum_probs=29.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCC
Q 004891          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVN  340 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~  340 (725)
                      -|.|||+|.+|.+.|..|+++|++|+++|..
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~   35 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAF   35 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            4899999999999999999999999999975

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=92.28  E-value=0.29  Score=46.49  Aligned_cols=41  Identities=32%  Similarity=0.289  Sum_probs=34.4

Q ss_pred             ceEEEE-c-CCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 004891          309 RKVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (725)
Q Consensus       309 ~kIaVI-G-~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~  349 (725)
                      .|+++| | .+-||.++|..|++.|++|++.+++++.++...+
T Consensus         6 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~   48 (251)
T d1zk4a1           6 GKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAK   48 (251)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            367777 4 4779999999999999999999999988776543

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=92.16  E-value=0.18  Score=47.58  Aligned_cols=72  Identities=24%  Similarity=0.215  Sum_probs=44.6

Q ss_pred             ceEEEEcCCCCcHHHHH----HHHH--CCCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccC
Q 004891          309 RKVAVIGGGLMGSGIAT----AHIL--NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~----~l~~--~G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (725)
                      -||||||+|.+|+-++.    .+.+  .+++|+ ++|++++.++...+..          + +         ......++
T Consensus        17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~----------~-~---------~~~~~~~~   76 (237)
T d2nvwa1          17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQL----------Q-L---------KHATGFDS   76 (237)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHT----------T-C---------TTCEEESC
T ss_pred             eEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhc----------c-c---------ccceeecc
Confidence            58999999998765554    3433  356776 7899998876653210          1 0         11222344


Q ss_pred             ccc-c--cCCCEEEEeccCChH
Q 004891          382 YSE-F--KDVDMVIEAVIESVP  400 (725)
Q Consensus       382 ~~~-l--~~aDlVIeavpe~~~  400 (725)
                      ++. +  .+.|+|+.|+|....
T Consensus        77 ~~~l~~~~~iD~V~i~tp~~~h   98 (237)
T d2nvwa1          77 LESFAQYKDIDMIVVSVKVPEH   98 (237)
T ss_dssp             HHHHHHCTTCSEEEECSCHHHH
T ss_pred             hhhcccccccceeeccCCCcch
Confidence            432 2  568999999984433

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=92.12  E-value=0.22  Score=47.55  Aligned_cols=38  Identities=26%  Similarity=0.267  Sum_probs=31.9

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 004891          310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (725)
Q Consensus       310 kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~  347 (725)
                      ++-|.|+ +-||.++|..|++.|++|++.|++++.+++.
T Consensus         7 ~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~   45 (254)
T d1hdca_           7 TVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAAT   45 (254)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             EEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            4445566 6799999999999999999999999887654

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.09  E-value=0.069  Score=51.45  Aligned_cols=43  Identities=16%  Similarity=0.109  Sum_probs=35.6

Q ss_pred             ceEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHH
Q 004891          309 RKVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (725)
Q Consensus       309 ~kIaVI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i  351 (725)
                      .|+++| |+ +-||.++|..|++.|++|++.+++++.+++..+.+
T Consensus         8 gK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~   52 (259)
T d1xq1a_           8 AKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKW   52 (259)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            356666 54 77999999999999999999999999988776543

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.07  E-value=0.19  Score=44.88  Aligned_cols=40  Identities=13%  Similarity=0.120  Sum_probs=34.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCc-EEEEeCChHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~-V~~~d~~~e~~~~~~  348 (725)
                      .+|.|+|+|.+|...++.+...|.+ |++.|.++++++.++
T Consensus        30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~   70 (174)
T d1f8fa2          30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAK   70 (174)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHH
Confidence            5799999999999999998888885 567799999887764

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.06  E-value=0.069  Score=47.41  Aligned_cols=40  Identities=18%  Similarity=0.091  Sum_probs=36.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~  348 (725)
                      ++|.|+|+|.+|...++.+...|.+|++.|+++++++.++
T Consensus        29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~   68 (166)
T d1llua2          29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELAR   68 (166)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhh
Confidence            5799999999999999999899999999999999987654

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=92.00  E-value=0.02  Score=48.75  Aligned_cols=34  Identities=24%  Similarity=0.340  Sum_probs=31.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e  342 (725)
                      +++.|||+|.+|.-+|..|.+.|.+|+++++.+.
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~   60 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG   60 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecc
Confidence            6899999999999999999999999999988654

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=91.82  E-value=0.044  Score=48.65  Aligned_cols=71  Identities=15%  Similarity=0.144  Sum_probs=52.4

Q ss_pred             ceEEEEcCCC-CcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCcccccC
Q 004891          309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (725)
Q Consensus       309 ~kIaVIG~G~-mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  387 (725)
                      ++|.|||-+. +|.++|..|.+.|..|++.+.....+.                                     +.+++
T Consensus        38 K~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l~-------------------------------------~~~~~   80 (166)
T d1b0aa1          38 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLR-------------------------------------HHVEN   80 (166)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHH-------------------------------------HHHHH
T ss_pred             ceEEEEeccccccHHHHHHHHHhhccccccccccchhH-------------------------------------HHHhh
Confidence            6899999865 899999999999999999886543321                                     23467


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004891          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (725)
Q Consensus       388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (725)
                      ||+||.|+.-.--++       .+.+++++++++..
T Consensus        81 ADivI~a~G~p~~i~-------~~~vk~g~vvIDvG  109 (166)
T d1b0aa1          81 ADLLIVAVGKPGFIP-------GDWIKEGAIVIDVG  109 (166)
T ss_dssp             CSEEEECSCCTTCBC-------TTTSCTTCEEEECC
T ss_pred             hhHhhhhccCccccc-------ccccCCCcEEEecC
Confidence            999999986322222       23578899888653

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.76  E-value=0.046  Score=52.17  Aligned_cols=40  Identities=28%  Similarity=0.204  Sum_probs=33.8

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 004891          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (725)
Q Consensus       310 kIaVI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~  349 (725)
                      ||+|| |+ +-+|.++|..|++.|++|++.|++++.++...+
T Consensus         6 KvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~   47 (248)
T d2o23a1           6 LVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAK   47 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH
Confidence            67766 44 779999999999999999999999988776543

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.68  E-value=0.057  Score=47.02  Aligned_cols=93  Identities=15%  Similarity=0.172  Sum_probs=57.6

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCC---cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcc-cccCcc
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK-GVLDYS  383 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~---~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~-~~~~~~  383 (725)
                      .||||||+ |..|.-+.+.|.+.+|   ++..+..+...-+            .+...          ...+. ...+.+
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk------------~i~~~----------~~~~~~~~~~~~   60 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQ------------RMGFA----------ESSLRVGDVDSF   60 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTC------------EEEET----------TEEEECEEGGGC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCc------------ceeec----------cccchhccchhh
Confidence            57999998 9999999999987665   5665543322100            00000          00111 111225


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCh
Q 004891          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL  428 (725)
Q Consensus       384 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~  428 (725)
                      .+.++|++|.|+|  ...-.++..++.   ..+++|++++|....
T Consensus        61 ~~~~~d~vf~a~p--~~~s~~~~~~~~---~~g~~VID~Ss~fR~  100 (144)
T d2hjsa1          61 DFSSVGLAFFAAA--AEVSRAHAERAR---AAGCSVIDLSGALEP  100 (144)
T ss_dssp             CGGGCSEEEECSC--HHHHHHHHHHHH---HTTCEEEETTCTTTT
T ss_pred             hhccceEEEecCC--cchhhhhccccc---cCCceEEeechhhcc
Confidence            6789999999998  444445555543   467888898887653

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=91.67  E-value=0.23  Score=47.45  Aligned_cols=40  Identities=25%  Similarity=0.287  Sum_probs=33.8

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 004891          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (725)
Q Consensus       310 kIaVI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~  349 (725)
                      |++|| |+ +-||.++|..|++.|++|++.|++++.++...+
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~   47 (256)
T d1k2wa_           6 KTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAA   47 (256)
T ss_dssp             EEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            56655 55 889999999999999999999999988776543

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=91.59  E-value=0.21  Score=48.30  Aligned_cols=38  Identities=18%  Similarity=0.319  Sum_probs=32.4

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 004891          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (725)
Q Consensus       310 kIaVI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~  347 (725)
                      |+++| |+ +-||.++|..|++.|++|++.|++++.+++.
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~   45 (276)
T d1bdba_           6 EAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAEL   45 (276)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            55555 55 8899999999999999999999999887654

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.49  E-value=0.047  Score=48.82  Aligned_cols=40  Identities=18%  Similarity=0.086  Sum_probs=35.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~  348 (725)
                      .+|.|+|+|.+|...++.+...|.+|+++|+++++++.++
T Consensus        29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~   68 (168)
T d1piwa2          29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAM   68 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH
T ss_pred             CEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhh
Confidence            5799999999999988888788999999999999887764

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=91.48  E-value=0.069  Score=51.49  Aligned_cols=40  Identities=23%  Similarity=0.192  Sum_probs=31.8

Q ss_pred             eEEEE--cCCCCcHHHHHHHHHCCCcEEEEeCChH-HHHHHHH
Q 004891          310 KVAVI--GGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIK  349 (725)
Q Consensus       310 kIaVI--G~G~mG~~iA~~l~~~G~~V~~~d~~~e-~~~~~~~  349 (725)
                      |++||  |.+-+|.++|..|++.|++|++.+++.+ .++...+
T Consensus         8 K~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~   50 (261)
T d1geea_           8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLE   50 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHH
Confidence            67777  4578999999999999999999999854 4444433

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.43  E-value=0.042  Score=51.36  Aligned_cols=32  Identities=16%  Similarity=0.209  Sum_probs=30.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCh
Q 004891          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (725)
                      -|.|||+|.-|...|..|+++|++|+++|.++
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            38999999999999999999999999999975

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.40  E-value=0.051  Score=51.35  Aligned_cols=37  Identities=22%  Similarity=0.316  Sum_probs=33.7

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChH
Q 004891          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (725)
Q Consensus       306 ~~~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e  342 (725)
                      ..-+||.|||+|.-|...|..|++.|++|++++.+.+
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence            3558999999999999999999999999999998764

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=91.35  E-value=0.036  Score=50.02  Aligned_cols=40  Identities=20%  Similarity=0.263  Sum_probs=35.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~  348 (725)
                      .+|.|+|+|.+|...++.+...|. .|++.|+++++++.++
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~   70 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK   70 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHH
Confidence            579999999999999999999998 6889999999877764

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=91.00  E-value=0.33  Score=43.37  Aligned_cols=41  Identities=15%  Similarity=0.191  Sum_probs=36.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK  349 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~  349 (725)
                      .+|.|+|+|.+|...++.+...|. +|++.|+++++++.+++
T Consensus        31 ~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~   72 (176)
T d1d1ta2          31 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMA   72 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHh
Confidence            469999999999999999999995 79999999999888753

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.99  E-value=0.049  Score=52.29  Aligned_cols=34  Identities=32%  Similarity=0.330  Sum_probs=30.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE  342 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e  342 (725)
                      .+|.|||+|.-|...|..|+++|+ +|++++++++
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            379999999999999999999996 8999998764

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.97  E-value=0.043  Score=51.55  Aligned_cols=34  Identities=21%  Similarity=0.190  Sum_probs=30.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCChH
Q 004891          309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSE  342 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~--G~~V~~~d~~~e  342 (725)
                      .||+|||+|.-|.+-|..|.++  |++|+++|..+.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            4899999999999999999875  789999998864

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.89  E-value=0.23  Score=42.33  Aligned_cols=81  Identities=12%  Similarity=0.099  Sum_probs=50.0

Q ss_pred             eEEEEcC-CCCcHHHHHHHHH-CCCcEE-EEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccccc
Q 004891          310 KVAVIGG-GLMGSGIATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (725)
Q Consensus       310 kIaVIG~-G~mG~~iA~~l~~-~G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  386 (725)
                      ||+|+|+ |.||..++..+.+ .++++. .+|+.... ..                                    ....
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~~-~~------------------------------------~~~~   43 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPL-SL------------------------------------LTDG   43 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCCT-HH------------------------------------HHTT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCch-hh------------------------------------hccc
Confidence            7999995 9999999988766 466655 44543210 00                                    0124


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChHHHh
Q 004891          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG  432 (725)
Q Consensus       387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~  432 (725)
                      ++|+||+-..  ++...+.++...   ..++-++..|+++...++.
T Consensus        44 ~~DvvIDFS~--p~~~~~~~~~~~---~~~~~~ViGTTG~~~~~~~   84 (135)
T d1yl7a1          44 NTEVVIDFTH--PDVVMGNLEFLI---DNGIHAVVGTTGFTAERFQ   84 (135)
T ss_dssp             TCSEEEECCC--TTTHHHHHHHHH---HTTCEEEECCCCCCHHHHH
T ss_pred             cCCEEEEccc--HHHHHHHHHHHH---hcCCCEEEeccccchhHHH
Confidence            6899998765  444444444433   3455566778888765444

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=90.85  E-value=0.37  Score=45.43  Aligned_cols=38  Identities=13%  Similarity=0.165  Sum_probs=31.7

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 004891          310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (725)
Q Consensus       310 kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~  347 (725)
                      ++-|.|+ +.+|.++|..|++.|++|++.+++.+.+++.
T Consensus         7 ~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~   45 (241)
T d2a4ka1           7 TILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEA   45 (241)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            3445566 5699999999999999999999999887654

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=90.81  E-value=0.15  Score=45.71  Aligned_cols=35  Identities=23%  Similarity=0.418  Sum_probs=27.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCC-CcEE-EEeCChHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNN-IYVV-LKEVNSEY  343 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G-~~V~-~~d~~~e~  343 (725)
                      .||||.|.|.||+.+.+.+.... .+|+ +.|+++..
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~   39 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDF   39 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSH
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChH
Confidence            58999999999999999988654 5655 55666544

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=90.69  E-value=0.076  Score=50.76  Aligned_cols=36  Identities=25%  Similarity=0.250  Sum_probs=30.4

Q ss_pred             eEEEE-c-CCCCcHHHHHHHHHCCCcEEEEeCChHHHH
Q 004891          310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLL  345 (725)
Q Consensus       310 kIaVI-G-~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~  345 (725)
                      |+++| | .+-||.++|..|++.|++|++.|++++..+
T Consensus         6 K~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~   43 (248)
T d2d1ya1           6 KGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKE   43 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            45555 5 588999999999999999999999987644

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=90.66  E-value=0.14  Score=45.72  Aligned_cols=40  Identities=18%  Similarity=0.214  Sum_probs=35.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~  348 (725)
                      .+|.|+|+|-+|...++.++..|. .|++.|+++++.+.+.
T Consensus        30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~   70 (176)
T d2jhfa2          30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK   70 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHH
Confidence            579999999999999999999885 8999999999977764

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=90.46  E-value=0.39  Score=42.75  Aligned_cols=40  Identities=18%  Similarity=0.146  Sum_probs=35.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~  348 (725)
                      .+|.|+|+|.+|...++.+...|. +|++.|+++++++.++
T Consensus        29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~   69 (174)
T d1p0fa2          29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI   69 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHH
Confidence            579999999999999999988886 7999999999988764

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=90.43  E-value=0.48  Score=44.59  Aligned_cols=41  Identities=22%  Similarity=0.173  Sum_probs=34.2

Q ss_pred             ceEEEE-cC-CCCcHHHHHHHHHCCCc-------EEEEeCChHHHHHHHH
Q 004891          309 RKVAVI-GG-GLMGSGIATAHILNNIY-------VVLKEVNSEYLLKGIK  349 (725)
Q Consensus       309 ~kIaVI-G~-G~mG~~iA~~l~~~G~~-------V~~~d~~~e~~~~~~~  349 (725)
                      |+|.+| |+ +-+|.++|..|++.|++       |++++++++.++...+
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~   50 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISL   50 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHH
Confidence            467666 66 66999999999999997       9999999998877643

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.37  E-value=0.1  Score=45.66  Aligned_cols=35  Identities=11%  Similarity=0.018  Sum_probs=29.7

Q ss_pred             eEEEE--cCCCCcHHHHHHHHHCCCcEEEEeCChHHH
Q 004891          310 KVAVI--GGGLMGSGIATAHILNNIYVVLKEVNSEYL  344 (725)
Q Consensus       310 kIaVI--G~G~mG~~iA~~l~~~G~~V~~~d~~~e~~  344 (725)
                      .|.|+  |.|.||..+|..|++.|.+|+++++.+.-+
T Consensus        41 ~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~   77 (156)
T d1djqa2          41 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLAN   77 (156)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTT
T ss_pred             ceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccc
Confidence            44454  999999999999999999999999876443

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.29  E-value=0.14  Score=48.96  Aligned_cols=44  Identities=14%  Similarity=0.144  Sum_probs=36.9

Q ss_pred             ceEEEE-cC-CCCcHHHHHHHHH---CCCcEEEEeCChHHHHHHHHHHH
Q 004891          309 RKVAVI-GG-GLMGSGIATAHIL---NNIYVVLKEVNSEYLLKGIKTIE  352 (725)
Q Consensus       309 ~kIaVI-G~-G~mG~~iA~~l~~---~G~~V~~~d~~~e~~~~~~~~i~  352 (725)
                      .||+|| |+ +-+|.++|..|++   .|++|++.+|+++.++...+.+.
T Consensus         6 gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~   54 (259)
T d1oaaa_           6 CAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELG   54 (259)
T ss_dssp             SEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHH
Confidence            589999 55 6789999999986   79999999999999888765543

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=89.82  E-value=1.1  Score=39.15  Aligned_cols=40  Identities=15%  Similarity=0.155  Sum_probs=34.3

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~  348 (725)
                      .+|.|+|+ |.+|...++.+...|. +|++.++++++++.++
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~   70 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK   70 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH
T ss_pred             CEEEEEeccccceeeeeecccccccccccccccchhhHHHHH
Confidence            57999995 9999998888888885 8999999999877764

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.77  E-value=0.12  Score=50.02  Aligned_cols=43  Identities=19%  Similarity=0.131  Sum_probs=36.6

Q ss_pred             ceEEEE--cCCCCcHHHHHHHHHC-CCcEEEEeCChHHHHHHHHHH
Q 004891          309 RKVAVI--GGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTI  351 (725)
Q Consensus       309 ~kIaVI--G~G~mG~~iA~~l~~~-G~~V~~~d~~~e~~~~~~~~i  351 (725)
                      ++|+||  |.+-+|..+|..|++. |..|++.+|++++++.+.+.+
T Consensus         3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l   48 (275)
T d1wmaa1           3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQL   48 (275)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHH
Confidence            579998  5688999999999975 999999999999988876543

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=89.70  E-value=0.49  Score=39.63  Aligned_cols=37  Identities=14%  Similarity=-0.029  Sum_probs=31.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~  347 (725)
                      +.|-|+|.|.+|..++..|  .|++|+++|.+++..+..
T Consensus         1 kHivI~G~g~~g~~l~~~L--~~~~i~vi~~d~~~~~~~   37 (129)
T d2fy8a1           1 RHVVICGWSESTLECLREL--RGSEVFVLAEDENVRKKV   37 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTS--CGGGEEEEESCTTHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHH--cCCCCEEEEcchHHHHHH
Confidence            3588999999999999998  477899999999987654

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=89.67  E-value=0.37  Score=45.93  Aligned_cols=37  Identities=19%  Similarity=0.154  Sum_probs=30.8

Q ss_pred             ceEEEEcC-CC--CcHHHHHHHHHCCCcEEEEeCChHHHH
Q 004891          309 RKVAVIGG-GL--MGSGIATAHILNNIYVVLKEVNSEYLL  345 (725)
Q Consensus       309 ~kIaVIG~-G~--mG~~iA~~l~~~G~~V~~~d~~~e~~~  345 (725)
                      |+|-|.|+ |.  ||.++|+.|++.|++|++.+++.+++.
T Consensus         7 K~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~   46 (268)
T d2h7ma1           7 KRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLI   46 (268)
T ss_dssp             CEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHH
Confidence            45666685 55  999999999999999999999987653

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=89.61  E-value=0.21  Score=42.71  Aligned_cols=82  Identities=12%  Similarity=0.009  Sum_probs=58.8

Q ss_pred             ceEEEEcC----CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCccc
Q 004891          309 RKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (725)
Q Consensus       309 ~kIaVIG~----G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (725)
                      ++|+|||+    +..|..+...|.+.||+++.+..++..-                           ......+..++.+
T Consensus        14 ksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~---------------------------~i~g~~~~~~l~~   66 (136)
T d1iuka_          14 KTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGE---------------------------ELFGEEAVASLLD   66 (136)
T ss_dssp             CEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTS---------------------------EETTEECBSSGGG
T ss_pred             CeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccc---------------------------eeeceecccchhh
Confidence            57999998    7789999999999999999999875320                           0112344555555


Q ss_pred             c-cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEE
Q 004891          385 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  420 (725)
Q Consensus       385 l-~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~  420 (725)
                      + ...|+|+.++|  .+...+++++..+. ...++++
T Consensus        67 i~~~iD~v~v~~p--~~~v~~~v~~~~~~-g~k~i~~  100 (136)
T d1iuka_          67 LKEPVDILDVFRP--PSALMDHLPEVLAL-RPGLVWL  100 (136)
T ss_dssp             CCSCCSEEEECSC--HHHHTTTHHHHHHH-CCSCEEE
T ss_pred             ccCCCceEEEecc--HHHHHHHHHHHHhh-CCCeEEE
Confidence            5 45799999998  77667778776654 3445554

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=89.58  E-value=0.17  Score=48.05  Aligned_cols=42  Identities=19%  Similarity=0.102  Sum_probs=32.3

Q ss_pred             eEEEE--cCCCCcHHHHHHHHHCCCcEEEEe-CChHHHHHHHHHH
Q 004891          310 KVAVI--GGGLMGSGIATAHILNNIYVVLKE-VNSEYLLKGIKTI  351 (725)
Q Consensus       310 kIaVI--G~G~mG~~iA~~l~~~G~~V~~~d-~~~e~~~~~~~~i  351 (725)
                      +|++|  |.+-+|.++|..|++.|++|++.+ ++++.++...+.+
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~   46 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQI   46 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHH
Confidence            36777  457899999999999999998865 5677766655443

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=89.55  E-value=0.11  Score=50.21  Aligned_cols=36  Identities=22%  Similarity=0.252  Sum_probs=32.5

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHH
Q 004891          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEY  343 (725)
Q Consensus       308 ~~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~  343 (725)
                      -+||.|+|+ |.+|+.++..|.++|++|++++|+...
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            378999997 999999999999999999999997554

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.53  E-value=0.11  Score=49.58  Aligned_cols=38  Identities=21%  Similarity=0.274  Sum_probs=33.2

Q ss_pred             ceEEEE--cCCCCcHHHHHHHHHCCCcEEEEeCChHHHHH
Q 004891          309 RKVAVI--GGGLMGSGIATAHILNNIYVVLKEVNSEYLLK  346 (725)
Q Consensus       309 ~kIaVI--G~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~  346 (725)
                      .|+++|  |.+.+|.++|+.|++.|++|++.|++++.++.
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~   45 (245)
T d2ag5a1           6 GKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQE   45 (245)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGG
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            467777  66999999999999999999999999887654

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.41  E-value=0.24  Score=43.62  Aligned_cols=40  Identities=23%  Similarity=0.148  Sum_probs=35.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~  348 (725)
                      ++|.|+|+|.+|...++.+...|.+|++.+.++++++.++
T Consensus        29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k   68 (168)
T d1rjwa2          29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK   68 (168)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             CEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhh
Confidence            5799999999999988888889999999999999877653

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.38  E-value=0.15  Score=45.96  Aligned_cols=104  Identities=15%  Similarity=0.190  Sum_probs=56.5

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHC-CCcEEEE-eCChH-HHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-
Q 004891          308 VRKVAVIGG-GLMGSGIATAHILN-NIYVVLK-EVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (725)
Q Consensus       308 ~~kIaVIG~-G~mG~~iA~~l~~~-G~~V~~~-d~~~e-~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (725)
                      |.||+|||+ |..|.-+.+.|.++ .+++.-. -.+.+ ..-+   .+.......  .+...        .......+. 
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk---~~~~~~~~~--~~~~~--------~~~~~~~~~~   67 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGK---LISDLHPQL--KGIVD--------LPLQPMSDVR   67 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTC---BHHHHCGGG--TTTCC--------CBEEEESCGG
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccc---ccccccccc--ccccc--------cccccchhhh
Confidence            679999997 99999999999997 5566543 22211 1000   000000000  00000        001111122 


Q ss_pred             ccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 004891          383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  429 (725)
Q Consensus       383 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~  429 (725)
                      ....++|+||.|+|  .....++...+.   ..++.++++++.....
T Consensus        68 ~~~~~~dvvf~alp--~~~s~~~~~~~~---~~~~~vIDlSadfRl~  109 (179)
T d2g17a1          68 DFSADVDVVFLATA--HEVSHDLAPQFL---QAGCVVFDLSGAFRVN  109 (179)
T ss_dssp             GTCTTCCEEEECSC--HHHHHHHHHHHH---HTTCEEEECSSTTSSS
T ss_pred             hhhcccceeecccc--chhHHHHhhhhh---hcCceeeccccccccc
Confidence            33578999999999  444444444443   4677888887765543

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.20  E-value=0.08  Score=52.45  Aligned_cols=31  Identities=32%  Similarity=0.463  Sum_probs=29.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCCcEEEEeCCh
Q 004891          311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (725)
Q Consensus       311 IaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (725)
                      |.|||+|.-|.+-|..|+++|++|+++|.+.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            7899999999999999999999999999764

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=88.73  E-value=0.62  Score=44.43  Aligned_cols=35  Identities=17%  Similarity=0.257  Sum_probs=29.2

Q ss_pred             ceEEEEcC-C--CCcHHHHHHHHHCCCcEEEEeCChHH
Q 004891          309 RKVAVIGG-G--LMGSGIATAHILNNIYVVLKEVNSEY  343 (725)
Q Consensus       309 ~kIaVIG~-G--~mG~~iA~~l~~~G~~V~~~d~~~e~  343 (725)
                      |++-|.|+ |  -||.++|..|++.|++|++.+++++.
T Consensus         6 K~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~   43 (274)
T d2pd4a1           6 KKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESL   43 (274)
T ss_dssp             CEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTT
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            45666676 5  49999999999999999999999653

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=88.70  E-value=0.77  Score=43.52  Aligned_cols=91  Identities=15%  Similarity=0.116  Sum_probs=61.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-c--cc
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S--EF  385 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~--~l  385 (725)
                      ++|.=+|+|. | .++..+++.|.+|+.+|++++.++.+++..+.       .+. .        .++ ...+. +  .-
T Consensus       122 ~~VLDiGcGs-G-~l~i~aa~~g~~V~gvDis~~av~~A~~na~~-------n~~-~--------~~~-~~~d~~~~~~~  182 (254)
T d2nxca1         122 DKVLDLGTGS-G-VLAIAAEKLGGKALGVDIDPMVLPQAEANAKR-------NGV-R--------PRF-LEGSLEAALPF  182 (254)
T ss_dssp             CEEEEETCTT-S-HHHHHHHHTTCEEEEEESCGGGHHHHHHHHHH-------TTC-C--------CEE-EESCHHHHGGG
T ss_pred             CEEEEcccch-h-HHHHHHHhcCCEEEEEECChHHHHHHHHHHHH-------cCC-c--------eeE-Eeccccccccc
Confidence            4788899997 4 35667788899999999999999988754321       121 1        011 11121 1  12


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEE
Q 004891          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  420 (725)
Q Consensus       386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~  420 (725)
                      ...|+|+-.+.  ......++.++...++|+..++
T Consensus       183 ~~fD~V~ani~--~~~l~~l~~~~~~~LkpGG~li  215 (254)
T d2nxca1         183 GPFDLLVANLY--AELHAALAPRYREALVPGGRAL  215 (254)
T ss_dssp             CCEEEEEEECC--HHHHHHHHHHHHHHEEEEEEEE
T ss_pred             cccchhhhccc--cccHHHHHHHHHHhcCCCcEEE
Confidence            45799987765  5666778888888888877654

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=88.68  E-value=0.14  Score=49.63  Aligned_cols=35  Identities=23%  Similarity=0.269  Sum_probs=31.5

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChH
Q 004891          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSE  342 (725)
Q Consensus       308 ~~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e  342 (725)
                      -+||.|+|+ |.+|+.++..|.+.|++|++.+|++.
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            368999996 99999999999999999999998754

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=88.54  E-value=0.47  Score=44.80  Aligned_cols=35  Identities=26%  Similarity=0.407  Sum_probs=29.2

Q ss_pred             ceEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCChHH
Q 004891          309 RKVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEY  343 (725)
Q Consensus       309 ~kIaVI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~  343 (725)
                      .|+++| |+ +-||.++|..|++.|++|++.|++++.
T Consensus         5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~   41 (247)
T d2ew8a1           5 DKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP   41 (247)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH
Confidence            356666 55 679999999999999999999998753

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.46  E-value=0.063  Score=50.33  Aligned_cols=34  Identities=18%  Similarity=0.156  Sum_probs=30.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCC-------CcEEEEeCChH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNN-------IYVVLKEVNSE  342 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G-------~~V~~~d~~~e  342 (725)
                      .||+|||+|.-|.+-|..|+++|       ++|++||.++.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            48999999999999999999988       47999998763

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=88.18  E-value=0.86  Score=43.48  Aligned_cols=38  Identities=29%  Similarity=0.274  Sum_probs=30.3

Q ss_pred             eEEEE-c-CCCCcHHHHHHHHHCCCcEEEEeCCh-HHHHHH
Q 004891          310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNS-EYLLKG  347 (725)
Q Consensus       310 kIaVI-G-~G~mG~~iA~~l~~~G~~V~~~d~~~-e~~~~~  347 (725)
                      |+++| | .+-+|.+||..|++.|++|++.+++. +.++..
T Consensus        19 K~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~   59 (272)
T d1g0oa_          19 KVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEV   59 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHH
Confidence            66666 5 58899999999999999999998874 444443

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=88.03  E-value=0.1  Score=46.23  Aligned_cols=33  Identities=42%  Similarity=0.483  Sum_probs=29.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCh
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNS  341 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~--~V~~~d~~~  341 (725)
                      +||.|||+|..|..+|..|.+.|.  +|+++++++
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            689999999999999999999875  789999876

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=87.90  E-value=0.12  Score=48.87  Aligned_cols=33  Identities=30%  Similarity=0.349  Sum_probs=30.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChH
Q 004891          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e  342 (725)
                      -|.|||+|.-|...|..|+++|++|+++|.++.
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            489999999999999999999999999998754

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.87  E-value=0.066  Score=50.83  Aligned_cols=36  Identities=19%  Similarity=0.216  Sum_probs=29.7

Q ss_pred             ceEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCChHHH
Q 004891          309 RKVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYL  344 (725)
Q Consensus       309 ~kIaVI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~  344 (725)
                      .|+++| |+ +-||.++|..|++.|++|++.+++++..
T Consensus         7 gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~   44 (237)
T d1uzma1           7 SRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP   44 (237)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh
Confidence            355555 55 6799999999999999999999987654

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=87.28  E-value=0.76  Score=43.33  Aligned_cols=39  Identities=18%  Similarity=0.160  Sum_probs=29.5

Q ss_pred             ceEEEEcC-CC--CcHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 004891          309 RKVAVIGG-GL--MGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (725)
Q Consensus       309 ~kIaVIG~-G~--mG~~iA~~l~~~G~~V~~~d~~~e~~~~~  347 (725)
                      |+|-|.|+ |.  +|.++|..|++.|++|++.+++++..+.+
T Consensus         6 K~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~   47 (258)
T d1qsga_           6 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRV   47 (258)
T ss_dssp             CEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHH
T ss_pred             CEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            34555565 43  66999999999999999999997654443

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=87.13  E-value=1.2  Score=41.92  Aligned_cols=38  Identities=21%  Similarity=0.144  Sum_probs=30.1

Q ss_pred             ceEEEEcC-C--CCcHHHHHHHHHCCCcEEEEeCChHHHHH
Q 004891          309 RKVAVIGG-G--LMGSGIATAHILNNIYVVLKEVNSEYLLK  346 (725)
Q Consensus       309 ~kIaVIG~-G--~mG~~iA~~l~~~G~~V~~~d~~~e~~~~  346 (725)
                      |++-|.|+ |  -+|.++|..|++.|++|++.+++++..+.
T Consensus         9 K~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~   49 (256)
T d1ulua_           9 KKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPE   49 (256)
T ss_dssp             CEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHH
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHH
Confidence            34556676 4  49999999999999999999998765444

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=87.10  E-value=0.22  Score=44.76  Aligned_cols=40  Identities=15%  Similarity=-0.071  Sum_probs=34.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  350 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~  350 (725)
                      .+|-.||+|. | ..+..|++.|++|+++|++++.++.+.++
T Consensus        22 ~rvLd~GCG~-G-~~a~~la~~G~~V~gvD~S~~~i~~a~~~   61 (201)
T d1pjza_          22 ARVLVPLCGK-S-QDMSWLSGQGYHVVGAELSEAAVERYFTE   61 (201)
T ss_dssp             CEEEETTTCC-S-HHHHHHHHHCCEEEEEEECHHHHHHHHHH
T ss_pred             CEEEEecCcC-C-HHHHHHHHcCCceEeecccHHHHHHHHHH
Confidence            5899999998 3 57778999999999999999999988653

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=87.05  E-value=0.38  Score=42.60  Aligned_cols=40  Identities=15%  Similarity=0.221  Sum_probs=33.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~  348 (725)
                      .+|.|+|+|-+|...++.+...|. .|++.|+++++++.++
T Consensus        30 ~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak   70 (176)
T d2fzwa2          30 SVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAK   70 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred             CEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHH
Confidence            579999999998888888888886 6788899998877654

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.05  E-value=0.36  Score=44.45  Aligned_cols=38  Identities=18%  Similarity=0.072  Sum_probs=31.2

Q ss_pred             CcceEEEEcC-CCCcHHHHHHHHHCCCcEEEE--eCChHHH
Q 004891          307 GVRKVAVIGG-GLMGSGIATAHILNNIYVVLK--EVNSEYL  344 (725)
Q Consensus       307 ~~~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~--d~~~e~~  344 (725)
                      +|++|.|.|+ |.+|+.++..|++.|++|.++  .|+++..
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~   42 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGK   42 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHH
Confidence            4789999985 999999999999999876554  5676653

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=87.02  E-value=0.16  Score=45.62  Aligned_cols=98  Identities=11%  Similarity=0.135  Sum_probs=55.4

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccccCc-cc
Q 004891          308 VRKVAVIGG-GLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (725)
Q Consensus       308 ~~kIaVIG~-G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (725)
                      |.||||||+ |..|.-+.+.|.++-+ ++..+--+...-+.    +..........            ..+. ..+. +.
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~----i~~~~p~~~~~------------~~~~-~~~~~~~   63 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKK----LEEIFPSTLEN------------SILS-EFDPEKV   63 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSB----HHHHCGGGCCC------------CBCB-CCCHHHH
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCc----ccccCchhhcc------------cccc-ccCHhHh
Confidence            579999998 9999999999988643 55544322211011    11100000000            0011 1222 23


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 004891          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  429 (725)
Q Consensus       385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~  429 (725)
                      ..++|+|+.|+|.....  +..    +.. .++.|+++++.....
T Consensus        64 ~~~~dvvf~a~p~~~s~--~~~----~~~-~~~~VIDlSadfRl~  101 (176)
T d1vkna1          64 SKNCDVLFTALPAGASY--DLV----REL-KGVKIIDLGADFRFD  101 (176)
T ss_dssp             HHHCSEEEECCSTTHHH--HHH----TTC-CSCEEEESSSTTTCS
T ss_pred             ccccceEEEccccHHHH--HHH----Hhh-ccceEEecCcccccc
Confidence            46799999999966553  222    222 577888998877654

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=87.02  E-value=0.13  Score=48.88  Aligned_cols=32  Identities=16%  Similarity=0.305  Sum_probs=29.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN  340 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~  340 (725)
                      .||.|||+|.+|+.+|..|++.|. +++++|.+
T Consensus        31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            479999999999999999999998 88999865

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=86.78  E-value=0.14  Score=48.75  Aligned_cols=33  Identities=15%  Similarity=0.160  Sum_probs=27.8

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCChH
Q 004891          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSE  342 (725)
Q Consensus       310 kIaVI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e  342 (725)
                      ||.|| |+ +-||.++|..|++.|++|++.|++++
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            55555 65 77999999999999999999999764

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=86.78  E-value=0.3  Score=46.62  Aligned_cols=40  Identities=30%  Similarity=0.293  Sum_probs=30.9

Q ss_pred             eEEEE-c-CCCCcHHHHHHHHHCCCcEEEE-eCChHHHHHHHH
Q 004891          310 KVAVI-G-GGLMGSGIATAHILNNIYVVLK-EVNSEYLLKGIK  349 (725)
Q Consensus       310 kIaVI-G-~G~mG~~iA~~l~~~G~~V~~~-d~~~e~~~~~~~  349 (725)
                      |+++| | .+-+|.++|..|++.|++|++. +++++.++...+
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~   49 (259)
T d1ja9a_           7 KVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVA   49 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHH
Confidence            56666 4 4779999999999999999984 667666666544

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=86.58  E-value=0.17  Score=49.60  Aligned_cols=34  Identities=21%  Similarity=0.110  Sum_probs=31.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e  342 (725)
                      -.|.|||+|.-|..+|..|.+.|++|+++|.+++
T Consensus         8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD   41 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            4699999999999999999999999999998764

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=86.57  E-value=0.077  Score=44.23  Aligned_cols=35  Identities=23%  Similarity=0.265  Sum_probs=28.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH---CCCcEEEEeCChHH
Q 004891          309 RKVAVIGGGLMGSGIATAHIL---NNIYVVLKEVNSEY  343 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~---~G~~V~~~d~~~e~  343 (725)
                      ++|+|||+|.+|.-+|..+..   .|.+|+++++.+.-
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~i   58 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMI   58 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchh
Confidence            689999999999999976654   46689999986543

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=86.48  E-value=0.13  Score=50.95  Aligned_cols=35  Identities=20%  Similarity=0.197  Sum_probs=30.7

Q ss_pred             cceEEEEcCCCCcHHHHHHHH-----HCCCcEEEEeCChH
Q 004891          308 VRKVAVIGGGLMGSGIATAHI-----LNNIYVVLKEVNSE  342 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~-----~~G~~V~~~d~~~e  342 (725)
                      .--|.|||+|..|..+|..|+     ++|++|+++|+++.
T Consensus         7 ~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~   46 (360)
T d1pn0a1           7 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   46 (360)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence            356999999999999999996     58999999998753

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.36  E-value=0.27  Score=46.21  Aligned_cols=38  Identities=21%  Similarity=0.236  Sum_probs=31.8

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK  346 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~  346 (725)
                      |++-|.|+ +-||.++|..|++.|++|++.|++++.++.
T Consensus         5 K~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~   43 (234)
T d1o5ia_           5 KGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKR   43 (234)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHh
Confidence            44556666 679999999999999999999999887654

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=86.24  E-value=0.092  Score=43.67  Aligned_cols=34  Identities=18%  Similarity=0.175  Sum_probs=29.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH---CCCcEEEEeCChH
Q 004891          309 RKVAVIGGGLMGSGIATAHIL---NNIYVVLKEVNSE  342 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~---~G~~V~~~d~~~e  342 (725)
                      ++|+|||+|..|.-+|..+.+   .|.+|+++++.+.
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~   55 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM   55 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceeccccc
Confidence            689999999999999987654   4889999998754

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.11  E-value=0.35  Score=42.91  Aligned_cols=32  Identities=25%  Similarity=0.301  Sum_probs=28.6

Q ss_pred             ceEEEEcCC-CCcHHHHHHHHHCCCcEEEEeCC
Q 004891          309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVN  340 (725)
Q Consensus       309 ~kIaVIG~G-~mG~~iA~~l~~~G~~V~~~d~~  340 (725)
                      ++|.|||-+ ..|.++|..|++.|..|+..+.+
T Consensus        30 K~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~   62 (171)
T d1edza1          30 KKCIVINRSEIVGRPLAALLANDGATVYSVDVN   62 (171)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CEEEEECCccccHHHHHHHHHHCCCEEEEeccc
Confidence            689999976 56999999999999999998865

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=85.94  E-value=0.17  Score=50.51  Aligned_cols=36  Identities=19%  Similarity=0.225  Sum_probs=32.7

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYL  344 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~  344 (725)
                      ++|.|+|+ |.+|+.++..|++.|++|++..|++++.
T Consensus         4 ktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~   40 (350)
T d1xgka_           4 KTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL   40 (350)
T ss_dssp             CCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchh
Confidence            68999986 9999999999999999999999987653

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=85.75  E-value=1.5  Score=38.37  Aligned_cols=40  Identities=23%  Similarity=0.157  Sum_probs=33.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~  348 (725)
                      .+|.|+|+|.+|...++.+...|. .|++.|+++++++.++
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~   74 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE   74 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH
T ss_pred             CEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHh
Confidence            569999999999998888876665 7788999999877654

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.57  E-value=0.84  Score=44.44  Aligned_cols=34  Identities=24%  Similarity=0.447  Sum_probs=28.6

Q ss_pred             ceEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCChH
Q 004891          309 RKVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSE  342 (725)
Q Consensus       309 ~kIaVI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e  342 (725)
                      .|++|| |+ +-||.++|..|++.|++|++.|++.+
T Consensus         7 gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~   42 (302)
T d1gz6a_           7 GRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGD   42 (302)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence            367777 54 77999999999999999999988654

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=85.53  E-value=2  Score=39.87  Aligned_cols=92  Identities=20%  Similarity=0.127  Sum_probs=59.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccc-ccCccc---
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSE---  384 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~---  384 (725)
                      ++|-=||+|. | .++..|++.|++|+++|.+++-++.+.++...       .+.           ++.+ ..+.+.   
T Consensus        43 ~~iLDiGcGt-G-~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~-------~~~-----------~i~~~~~d~~~l~~  102 (251)
T d1wzna1          43 RRVLDLACGT-G-IPTLELAERGYEVVGLDLHEEMLRVARRKAKE-------RNL-----------KIEFLQGDVLEIAF  102 (251)
T ss_dssp             CEEEEETCTT-C-HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-------TTC-----------CCEEEESCGGGCCC
T ss_pred             CEEEEeCCCC-C-ccchhhcccceEEEEEeecccccccccccccc-------ccc-----------cchheehhhhhccc
Confidence            5899999998 4 55677889999999999999998887654321       110           1111 112211   


Q ss_pred             ccCCCEEEEec----cCChHHHHHHHHHHHHhCCCCeEEE
Q 004891          385 FKDVDMVIEAV----IESVPLKQKIFSELEKACPPHCILA  420 (725)
Q Consensus       385 l~~aDlVIeav----pe~~~~k~~v~~~l~~~~~~~~ii~  420 (725)
                      -...|+|+.+-    .-+..-.+.+++++..+++|+.+++
T Consensus       103 ~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~li  142 (251)
T d1wzna1         103 KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFI  142 (251)
T ss_dssp             CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             ccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEE
Confidence            13468877541    1123344678899999999987654

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.47  E-value=0.22  Score=49.90  Aligned_cols=34  Identities=24%  Similarity=0.374  Sum_probs=30.2

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCh
Q 004891          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS  341 (725)
Q Consensus       308 ~~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~  341 (725)
                      -+||.|.|+ |.+|+.++..|.+.|++|+++|+..
T Consensus        15 nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          15 NLKISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            357999976 9999999999999999999998753

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=85.23  E-value=0.48  Score=44.64  Aligned_cols=30  Identities=23%  Similarity=0.104  Sum_probs=27.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEe
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKE  338 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d  338 (725)
                      ++|+|-|.|.+|...|+.|.+.|.+|+.++
T Consensus        32 ~~v~IqGfGnVG~~~a~~L~~~Gakvv~vs   61 (242)
T d1v9la1          32 KTVAIQGMGNVGRWTAYWLEKMGAKVIAVS   61 (242)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEee
Confidence            689999999999999999999999988654

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=84.94  E-value=0.62  Score=41.80  Aligned_cols=30  Identities=20%  Similarity=0.341  Sum_probs=24.3

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCC-CcEEEEe
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNN-IYVVLKE  338 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G-~~V~~~d  338 (725)
                      -||||||+ |..|.-+.+.|.++- +++....
T Consensus         6 ikVaIlGATGyvG~elirLL~~HP~~ei~~l~   37 (183)
T d2cvoa1           6 VRIAVLGASGYTGAEIVRLLANHPQFRIKVMT   37 (183)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCceEEEEe
Confidence            58999998 999999999998863 3665554

>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.65  E-value=2.4  Score=42.22  Aligned_cols=109  Identities=16%  Similarity=0.142  Sum_probs=65.7

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHhhCCCcEEEEE-
Q 004891           27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV-  105 (725)
Q Consensus        27 al~~~~~~~l~~~l~~~~~~~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav-  105 (725)
                      .+.++-...-.+++..+.+.-++-.|+|.-. +.|+.|-+-          +.......+..++ .++.++..|+|..| 
T Consensus       109 v~~p~sA~K~A~~i~d~cd~~~lPLi~l~D~-pGF~~G~~~----------E~~gilr~GA~iv-~A~~~~~vP~i~vI~  176 (404)
T d1uyra2         109 VWHPNSAFKTAQAINDFNNGEQLPMMILANW-RGFSGGQRD----------MFNEVLKYGSFIV-DALVDYKQPIIIYIP  176 (404)
T ss_dssp             CBCHHHHHHHHHHHHHHHTTSCCCEEECCCC-CCBCC----------------CTHHHHHHHHH-HHHHTCCSCEEEEEC
T ss_pred             ccCchHHHHHHHHHHHhhhccccceEEeecC-CcccCcHHH----------HHHHHHHHHHHHH-HHHHhcCCCEEEEEe
Confidence            5667788888888887766556777777533 457776552          1233445666677 77999999999999 


Q ss_pred             -cccccchhhHHhh---hcCEEEeeCCceEeCcccccCCCCCchhhchHhh
Q 004891          106 -EGLALGGGLELAM---GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPR  152 (725)
Q Consensus       106 -~G~a~GgG~~lal---acD~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~r  152 (725)
                       .|.+.||.+..+-   ..|..     ..|..|...+|.+++-|+....-|
T Consensus       177 ~~g~~~GGa~vv~~~~~~~~~~-----~~yAwP~a~~gVm~pEGav~I~fr  222 (404)
T d1uyra2         177 PTGELRGGSWVVVDPTINADQM-----EMYADVNARAGVLEPQGMVGIKFR  222 (404)
T ss_dssp             TTCEEEHHHHHTTCGGGGTTTE-----EEEEETTCEEESSCHHHHHHHHSC
T ss_pred             CCcccchhhhhcccCccCCccc-----eEEECCccccccCChhhhhhheec
Confidence             5666665544331   11211     134555566666666666554433

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=84.58  E-value=0.19  Score=47.84  Aligned_cols=36  Identities=14%  Similarity=-0.109  Sum_probs=30.2

Q ss_pred             EEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 004891          312 AVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (725)
Q Consensus       312 aVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~  347 (725)
                      -|-|+ +-+|.++|..|++.|++|++.|++.+.++..
T Consensus         4 lVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~   40 (252)
T d1zmta1           4 IVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDEL   40 (252)
T ss_dssp             EESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHH
T ss_pred             EEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            34455 6699999999999999999999998876654

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=84.57  E-value=0.5  Score=44.80  Aligned_cols=34  Identities=35%  Similarity=0.353  Sum_probs=28.9

Q ss_pred             EEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCChHHH
Q 004891          311 VAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYL  344 (725)
Q Consensus       311 IaVI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~  344 (725)
                      |+|| |+ +-+|.++|..|+++|++|++.+++.+..
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~   38 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGA   38 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHH
Confidence            6666 44 6699999999999999999999986654

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=84.24  E-value=0.17  Score=48.38  Aligned_cols=33  Identities=24%  Similarity=0.388  Sum_probs=30.4

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCh
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS  341 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~  341 (725)
                      +||.|+|+ |.+|+.++..|.+.|++|+..|+++
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            57999997 9999999999999999999999864

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=84.03  E-value=0.2  Score=43.88  Aligned_cols=32  Identities=22%  Similarity=0.270  Sum_probs=27.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCh
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (725)
                      .||.|||+|..|..+|..|++ +.+|+++++.+
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP   32 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence            489999999999999998864 78999998753

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.94  E-value=0.39  Score=44.72  Aligned_cols=39  Identities=13%  Similarity=-0.170  Sum_probs=34.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~  349 (725)
                      .+|-.+|+|.  +..+..|++.|++|+++|.+++.++.+.+
T Consensus        47 ~rvLd~GCG~--G~~a~~LA~~G~~V~gvD~S~~ai~~a~~   85 (229)
T d2bzga1          47 LRVFFPLCGK--AVEMKWFADRGHSVVGVEISELGIQEFFT   85 (229)
T ss_dssp             CEEEETTCTT--CTHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             CEEEEeCCCC--cHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Confidence            4799999999  46688899999999999999999887754

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=83.74  E-value=0.61  Score=38.51  Aligned_cols=37  Identities=22%  Similarity=0.233  Sum_probs=32.0

Q ss_pred             CcceEEEEcCCCC-----------cHHHHHHHHHCCCcEEEEeCChHH
Q 004891          307 GVRKVAVIGGGLM-----------GSGIATAHILNNIYVVLKEVNSEY  343 (725)
Q Consensus       307 ~~~kIaVIG~G~m-----------G~~iA~~l~~~G~~V~~~d~~~e~  343 (725)
                      ..+||-|||+|..           +...+..|.+.|+++++++-|++.
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeT   50 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPET   50 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTS
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhh
Confidence            4589999999975           566778899999999999999976

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=83.61  E-value=0.53  Score=42.75  Aligned_cols=40  Identities=25%  Similarity=0.311  Sum_probs=33.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~  348 (725)
                      .+|.|+|+|.+|...++.+...|. +|++.|.++++++.+.
T Consensus        27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~   67 (195)
T d1kola2          27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAK   67 (195)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhh
Confidence            579999999999887877767776 7999999999988764

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.61  E-value=0.22  Score=45.10  Aligned_cols=33  Identities=15%  Similarity=0.126  Sum_probs=30.3

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCC
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVN  340 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~  340 (725)
                      .++|.|||+|.-|.+-|..+++.|.+|+++|..
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~   37 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGW   37 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCS
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEee
Confidence            478999999999999999999999999999854

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=83.47  E-value=0.26  Score=46.64  Aligned_cols=35  Identities=17%  Similarity=0.096  Sum_probs=32.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHH
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  343 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~  343 (725)
                      ..|.|||+|.-|..-|..++++|++|+++|.++..
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~   39 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI   39 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            46999999999999999999999999999998654

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=83.47  E-value=0.96  Score=43.13  Aligned_cols=38  Identities=21%  Similarity=0.141  Sum_probs=29.6

Q ss_pred             EEEE-cC-CCCcHHHHHHHHHCCCcEEEEeC-ChHHHHHHH
Q 004891          311 VAVI-GG-GLMGSGIATAHILNNIYVVLKEV-NSEYLLKGI  348 (725)
Q Consensus       311 IaVI-G~-G~mG~~iA~~l~~~G~~V~~~d~-~~e~~~~~~  348 (725)
                      |+|| |+ +-||.++|..|++.|++|++.++ +++.+++..
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~   44 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALS   44 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHH
Confidence            7888 44 67999999999999999998765 455555443

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=83.38  E-value=0.19  Score=47.10  Aligned_cols=34  Identities=26%  Similarity=0.338  Sum_probs=29.2

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCChHH
Q 004891          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEY  343 (725)
Q Consensus       310 kIaVI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~  343 (725)
                      |++|| |+ +-||.++|..|++.|++|++.|++++.
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            56666 54 889999999999999999999998764

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=83.20  E-value=0.22  Score=44.31  Aligned_cols=33  Identities=21%  Similarity=0.274  Sum_probs=29.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCh
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (725)
                      ++|.|||+|..|..+|..|.+.|.+|+++.+.+
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~   36 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGD   36 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCceEEEEecC
Confidence            689999999999999999999999988876654

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=83.19  E-value=0.43  Score=41.57  Aligned_cols=93  Identities=16%  Similarity=0.125  Sum_probs=54.9

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCC---cEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcc-cccCccc
Q 004891          310 KVAVIGG-GLMGSGIATAHILNNI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK-GVLDYSE  384 (725)
Q Consensus       310 kIaVIG~-G~mG~~iA~~l~~~G~---~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~  384 (725)
                      ||||||+ |..|.-+.+.|.++.+   ++..+.-+... .+           .+...          ..... .......
T Consensus         3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~-G~-----------~~~~~----------~~~~~~~~~~~~~   60 (154)
T d2gz1a1           3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSA-GK-----------SLKFK----------DQDITIEETTETA   60 (154)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGT-TC-----------EEEET----------TEEEEEEECCTTT
T ss_pred             EEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccc-cc-----------ccccc----------CCcccccccchhh
Confidence            7999999 9999999999998865   33444322111 00           00000          00111 1112245


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 004891          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  429 (725)
Q Consensus       385 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~  429 (725)
                      ..++|+++.|.|.  ....+...+.   ...++.|+++++.....
T Consensus        61 ~~~~d~~f~~~~~--~~s~~~~~~~---~~~~~~VIDlSsdfR~~  100 (154)
T d2gz1a1          61 FEGVDIALFSAGS--STSAKYAPYA---VKAGVVVVDNTSYFRQN  100 (154)
T ss_dssp             TTTCSEEEECSCH--HHHHHHHHHH---HHTTCEEEECSSTTTTC
T ss_pred             hhhhhhhhhccCc--cchhhHHhhh---ccccceehhcChhhhcc
Confidence            6889999999983  3333333333   34788899998876543

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=83.11  E-value=1.6  Score=38.71  Aligned_cols=93  Identities=14%  Similarity=0.054  Sum_probs=60.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccc-cCc----c
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY----S  383 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~----~  383 (725)
                      .+|.=||+|.=..  +..+++.+.+|+.+|++++.++.+++.+++       .|.-         .++++. .+.    .
T Consensus        35 ~~VLDiGcGsG~~--s~~lA~~~~~V~avD~~~~~l~~a~~n~~~-------~gl~---------~~v~~~~gda~~~~~   96 (186)
T d1l3ia_          35 DVAVDVGCGTGGV--TLELAGRVRRVYAIDRNPEAISTTEMNLQR-------HGLG---------DNVTLMEGDAPEALC   96 (186)
T ss_dssp             CEEEEESCTTSHH--HHHHHTTSSEEEEEESCHHHHHHHHHHHHH-------TTCC---------TTEEEEESCHHHHHT
T ss_pred             CEEEEEECCeEcc--cccccccceEEEEecCCHHHHHHHHHHHHH-------cCCC---------cceEEEECchhhccc
Confidence            5788899988444  445677788999999999999988765432       1110         122211 111    2


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEe
Q 004891          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT  421 (725)
Q Consensus       384 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s  421 (725)
                      .....|+|+...+  ..-..++++.+.+.++|+..++.
T Consensus        97 ~~~~~D~v~~~~~--~~~~~~~~~~~~~~LkpgG~lvi  132 (186)
T d1l3ia_          97 KIPDIDIAVVGGS--GGELQEILRIIKDKLKPGGRIIV  132 (186)
T ss_dssp             TSCCEEEEEESCC--TTCHHHHHHHHHHTEEEEEEEEE
T ss_pred             ccCCcCEEEEeCc--cccchHHHHHHHHHhCcCCEEEE
Confidence            3467898886654  33345778888888888775543

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=82.89  E-value=0.3  Score=48.49  Aligned_cols=35  Identities=17%  Similarity=0.102  Sum_probs=32.2

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEY  343 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~  343 (725)
                      +||-|.|+ |.+|+.++..|.+.|++|+++|++...
T Consensus         9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~   44 (356)
T d1rkxa_           9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPT   44 (356)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence            78999986 999999999999999999999998654

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=82.61  E-value=1.1  Score=42.28  Aligned_cols=36  Identities=14%  Similarity=0.103  Sum_probs=27.7

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHH
Q 004891          310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLL  345 (725)
Q Consensus       310 kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~  345 (725)
                      .|-|.|+ +-+|.++|..|++.|++|++.+++.+..+
T Consensus         7 ~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~   43 (254)
T d1sbya1           7 NVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPT   43 (254)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHH
T ss_pred             EEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHH
Confidence            3445555 56999999999999999988877655543

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=82.49  E-value=0.39  Score=40.19  Aligned_cols=37  Identities=16%  Similarity=0.293  Sum_probs=32.5

Q ss_pred             CcceEEEEcCCCC-----------cHHHHHHHHHCCCcEEEEeCChHH
Q 004891          307 GVRKVAVIGGGLM-----------GSGIATAHILNNIYVVLKEVNSEY  343 (725)
Q Consensus       307 ~~~kIaVIG~G~m-----------G~~iA~~l~~~G~~V~~~d~~~e~  343 (725)
                      ..+||.|||+|..           +...+..|.+.|+++++++-|++.
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~T   53 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPAT   53 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTC
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHh
Confidence            5789999999976           666778889999999999999976

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=82.49  E-value=0.28  Score=44.48  Aligned_cols=33  Identities=18%  Similarity=0.109  Sum_probs=28.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCCh
Q 004891          309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNS  341 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~--G~~V~~~d~~~  341 (725)
                      +||.|||+|..|..+|..|.+.  +.+|+++++++
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            5899999999999999999886  45899998764

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.05  E-value=0.43  Score=49.06  Aligned_cols=33  Identities=24%  Similarity=0.412  Sum_probs=30.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCh
Q 004891          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~G~-~V~~~d~~~  341 (725)
                      .||.|||+|.+|+.++..|+..|+ +++++|.+.
T Consensus        38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            489999999999999999999999 899999753

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=81.91  E-value=0.39  Score=42.61  Aligned_cols=40  Identities=20%  Similarity=0.219  Sum_probs=34.0

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~  348 (725)
                      ++|.|.|+ |.+|....+.+...|.+|+..+.++++.+.++
T Consensus        29 ~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~   69 (171)
T d1iz0a2          29 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL   69 (171)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHH
T ss_pred             CEEEEEeccccchhhhhhhhccccccccccccccccccccc
Confidence            57999996 99999888888888999999999988876653

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=81.87  E-value=0.3  Score=43.87  Aligned_cols=34  Identities=24%  Similarity=0.198  Sum_probs=30.7

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCh
Q 004891          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (725)
Q Consensus       308 ~~kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (725)
                      -++|.|||+|..|.+-|..+++.|.+|+++++..
T Consensus         5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence            4689999999999999999999999999998653

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.83  E-value=0.38  Score=47.66  Aligned_cols=31  Identities=29%  Similarity=0.386  Sum_probs=28.8

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeC
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEV  339 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~  339 (725)
                      +||.|.|+ |.+|+.++..|++.|++|+++|+
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            68999977 99999999999999999999984

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=81.56  E-value=0.37  Score=47.64  Aligned_cols=31  Identities=29%  Similarity=0.448  Sum_probs=28.7

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeC
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEV  339 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~  339 (725)
                      +||.|+|+ |.+|+.++..|++.|++|+++|+
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~   32 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDN   32 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            47999977 99999999999999999999986

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.22  E-value=0.51  Score=40.06  Aligned_cols=99  Identities=16%  Similarity=0.101  Sum_probs=56.6

Q ss_pred             ceEEEEcCCC----------CcHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCccc
Q 004891          309 RKVAVIGGGL----------MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG  378 (725)
Q Consensus       309 ~kIaVIG~G~----------mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~  378 (725)
                      +||+|+|+-.          -.-.++..|.+.|++|.+||+.-+..+.... ....+.....           . .....
T Consensus        14 kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~-~~~~~~~~~~-----------~-~~~~~   80 (136)
T d1mv8a3          14 RKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGA-NKEYIESKIP-----------H-VSSLL   80 (136)
T ss_dssp             CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSS-CHHHHHHTSH-----------H-HHTTB
T ss_pred             CEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhh-hhhhhhhccc-----------c-cccee
Confidence            6899999743          3567889999999999999974322110000 0000000000           0 01222


Q ss_pred             ccCc-ccccCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC
Q 004891          379 VLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI  426 (725)
Q Consensus       379 ~~~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~  426 (725)
                      .+++ +++.++|+||.+++-+.      |.++...+.++.+|.+....+
T Consensus        81 ~~~~~e~i~~~D~ivi~t~h~~------f~~l~~~~~~~~~I~D~~~~~  123 (136)
T d1mv8a3          81 VSDLDEVVASSDVLVLGNGDEL------FVDLVNKTPSGKKLVDLVGFM  123 (136)
T ss_dssp             CSCHHHHHHHCSEEEECSCCGG------GHHHHHSCCTTCEEEESSSCC
T ss_pred             ehhhhhhhhhceEEEEEeCCHH------HHHHHHHhcCCCEEEECCCCC
Confidence            3444 67899999999987332      344555566777777755443

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=80.74  E-value=0.26  Score=49.03  Aligned_cols=33  Identities=24%  Similarity=0.374  Sum_probs=28.4

Q ss_pred             CcceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeC
Q 004891          307 GVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEV  339 (725)
Q Consensus       307 ~~~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~  339 (725)
                      +|+||-|.|+ |.+|+.++..|.+.|++|.++.+
T Consensus         1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~   34 (346)
T d1oc2a_           1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVL   34 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEE
Confidence            4789999985 99999999999999998666654

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=80.65  E-value=0.32  Score=45.53  Aligned_cols=34  Identities=32%  Similarity=0.427  Sum_probs=30.6

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCChH
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSE  342 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e  342 (725)
                      .||-|.|+ +-+|.++|..|++.|++|++.|++++
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~   37 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   37 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            57878877 88999999999999999999999864

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.43  E-value=0.44  Score=46.61  Aligned_cols=31  Identities=19%  Similarity=0.524  Sum_probs=29.0

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeC
Q 004891          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEV  339 (725)
Q Consensus       309 ~kIaVIG~-G~mG~~iA~~l~~~G~~V~~~d~  339 (725)
                      +||-|.|+ |.+|+.++..|++.|++|+++|+
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            68999987 99999999999999999999986

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=80.40  E-value=0.39  Score=43.99  Aligned_cols=31  Identities=23%  Similarity=0.240  Sum_probs=29.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCC
Q 004891          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVN  340 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~  340 (725)
                      -|.|||+|.-|.+.|..+++.|.+|++++.+
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            4899999999999999999999999999986

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=80.22  E-value=0.39  Score=46.64  Aligned_cols=32  Identities=28%  Similarity=0.313  Sum_probs=29.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCh
Q 004891          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (725)
Q Consensus       310 kIaVIG~G~mG~~iA~~l~~~G~~V~~~d~~~  341 (725)
                      -|.|||+|.-|.+.|..+++.|.+|++++..+
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            59999999999999999999999999999754

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=80.12  E-value=0.93  Score=44.32  Aligned_cols=102  Identities=15%  Similarity=0.187  Sum_probs=61.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCChHHHHHHHHHHHHHHHhhHHcCCCCHHHHHHhhcCcccc-cCc-c-
Q 004891          309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY-S-  383 (725)
Q Consensus       309 ~kIaVIG~G~mG~~iA~~l~~~--G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~-  383 (725)
                      ++|.|||+|.-  +++..+++.  ..+|+++|++++.++.+.+.+...-....+..            +++.. .|. + 
T Consensus        79 k~VLiiG~G~G--~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~------------rv~i~~~Da~~~  144 (312)
T d1uira_          79 KRVLIVGGGEG--ATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDP------------RAVLVIDDARAY  144 (312)
T ss_dssp             CEEEEEECTTS--HHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCT------------TEEEEESCHHHH
T ss_pred             ceEEEeCCCch--HHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCC------------ceEEEEchHHHH
Confidence            68999999963  445555554  34899999999998887654322111111111            11111 111 1 


Q ss_pred             ---cccCCCEEEEeccCCh--------HHHHHHHHHHHHhCCCCeEEEecCC
Q 004891          384 ---EFKDVDMVIEAVIESV--------PLKQKIFSELEKACPPHCILATNTS  424 (725)
Q Consensus       384 ---~l~~aDlVIeavpe~~--------~~k~~v~~~l~~~~~~~~ii~s~tS  424 (725)
                         .-+.-|+||.-+++..        -...++++.+.+.++++.+++.+++
T Consensus       145 l~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~  196 (312)
T d1uira_         145 LERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG  196 (312)
T ss_dssp             HHHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hhhcCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecC
Confidence               1134788887664321        1246788899999999988876543