Citrus Sinensis ID: 004893

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720----
Protein Sequence
MILRTPPPKRPRDAAGEPIIECPPTAGGSDRRLVIYEDPSPAGRESSHQPSDHLLCTYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQLLKEVDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLSDSIEREKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREARKLKASYENTELLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLGHGDFSSENTKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQAVEELKSQSGDTGKLVDSYISGKITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKIVMDEHQRANGIPVTHFTLQSIYAQGDDEKLEFEYESSNTNIMVNDYTSQPEISRQVDIFVRKMNSIPAFTANLTVESFNRRTLS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEccHHHHccccccccHHHHcccccccccccEEEEEcccccEEEcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHcccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEcccccccccccEEEEEEEEEccccccEEEEEEcccccEEEcccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
milrtpppkrprdaagepiiecpptaggsdrrlviyedpspagresshqpsdhllCTYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQLLKEVDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLSDSIEREKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKlssstfqefsttdSNILVKHLQEEIRNYEAEVREARKLKASYENTELLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLirdipgvscsediPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEfkkpkndgggderanLTLTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLEsklghgdfssenTKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQAVEELKsqsgdtgklVDSYISGKITQLKEQIATLEKREERYKTVFADRISVFRRACCELFgykivmdehqrangipvthfTLQSiyaqgddeklefeyessntnimvndytsqpeisrQVDIFVRKMnsipaftanlTVESFNRRTLS
Flexible Loop (DISEMBL)
milrtpppkrprdaagepiiecpptaggsdrrLVIYEDPSpagresshqpSDHLLCTYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAaakgregvlqEQLLKEVDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKasllegklthlsdsierekkrlnnevtqlkreskssisrigadlEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKklssstfqefsttdsnILVKHLQEEIRNYEAEVREARklkasyentellkeklleeksrRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALvkekeevsksevkriesmlsvvteerdklrnvvnefkkpkndgggderanlTLTKELESSLAKKEEFIEELESNlhaqqeinsrqrdeikslseklnneerrikslerendrlRSEISllesklghgdfssentKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQAVEelksqsgdtgklvdSYISGKITQLKEQIATLEKREERYKtvfadrisVFRRACCELFGYKIVMDEHQRANGIPVTHFTLQSIYAQGDDEKLEFEYESSNTNIMVNDYTSQPEISRQVDIFVRKMNSipaftanltvesfnrrtls
Low Complexity Region (SEG)
MILRTPPPKRPRDAAGEPIIECPPTAGGSDRRLVIYEDPSPAGRESSHQPSDHLLCTYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQLLKEVDDSRERLKKQIQLCSELEAKHRNELNLRRkaesaaasaeekasLLEGKLTHLSDSIEREKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREARKLKASYENTellkeklleekSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSaeteaalvkekeevsksevkriesMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTkelesslakkeeFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLGHGDFSSENTKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQAVEELKSQSGDTGKLVDSYISGKITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKIVMDEHQRANGIPVTHFTLQSIYAQGDDEKLEFEYESSNTNIMVNDYTSQPEISRQVDIFVRKMNSIPAFTANLTVESFNRRTLS
Disordered region (IsUnstruct)
****************************************************HLLCTYQCRQMVKSDFLDALTNVEKQ****************************FLYA*******************************************************************************************************************************************************************ILVKHL*************************************************************LSSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKL*********************************************************************************************************************************************************************VLRMVNTLAV*************************************LVDSYISGKITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKIVMDEHQRANGIPVTHFTLQSIYAQGDDEKLEFEYESSNTNIMVNDYTSQPEISRQVDIFVRKMNSIPAFTANLTV*********
Disordered Region (DISOPRED)
*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************RACCELFGYKIV*****************************************************QVDIFVRKMNSIPAFTANLTVESFNRRTL*
Disordered Region (DISEMBL)
*************AAGEPIIECPPTAGGSDRRLVIYEDP***********SDHLLCTYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQLLKEVDDSRERLKKQIQLCSELEAKHRNELNLR**************SLLEGKLTHLSDSIEREKKRLNNE************SRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQ***************FSTTDSNILVKHLQEEIRNYEAEVREARKLKASYENTELLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQ***********************VKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLGHGDFSSENTKVLRMVNTLAVDNEAKQTIEALQTELQKT*****************GKLVDSYISGKITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKIVMDEHQRANGIPVTHFTLQSIYAQGDDEKLEFEYESSNTNIMVNDYTSQPEISRQVDIFVRKMNSIPAFTANLTVESFNRRTLS
Disordered Region (DISPRO)
******************************RRLV*YEDPS*******HQPSDHLLCTYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQLLKEVDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLSDSIEREKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREARKLKASYENTELLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLGHGDFSSENTKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQAVEEL************SYISGKITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKIVMDEHQRANGIPVTHFTLQSIYAQGDDEKLEFEYESSNTNIMVNDYTSQPEISRQVDIFVRKMNSIPAFTANLTVESFNRR***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MILRTPPPKRPRDAAGEPIIECPPTAGGSDRRLVIYEDPSPAGRESSHQPSDHLLCTYQCRQMVKSDFLDAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFLYAEQELAAAKGREGVLQEQLLKExxxxxxxxxxxxxxxxxxxxxHRNELNLxxxxxxxxxxxxxxxxxxxxxLTHLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLSSSTFQEFSTTDSNILxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQxxxxxxxxxxxxxxxxxxxxxAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLGHGDFSSENTKVLRMVNTLAVxxxxxxxxxxxxxxxxxxxxxxxxxxxxKSQSGDTGKLVDSYISGKxxxxxxxxxxxxxxxxxxxxxFADRISVFRRACCELFGYKIVMDEHQRANGIPVTHFTLQSIYAQGDDEKLEFEYESSNTNIMVNDYTSQPEISRQVDIFVRKMNSIPAFTANLTVESFNRRTLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	724	2.2.26 [Sep-21-2011]
Q9Y6D9	718	Mitotic spindle assembly	yes	no	0.712	0.718	0.246	4e-16
Q80YF0	717	Mitotic spindle assembly	yes	no	0.708	0.715	0.247	2e-12
Q9WTX8	717	Mitotic spindle assembly	yes	no	0.703	0.709	0.247	2e-11
Q6C452	704	Spindle assembly checkpoi	yes	no	0.153	0.157	0.297	9e-05
O08638	1972	Myosin-11 OS=Mus musculus	no	no	0.559	0.205	0.258	0.0004

>sp|Q9Y6D9|MD1L1_HUMAN Mitotic spindle assembly checkpoint protein MAD1 OS=Homo sapiens GN=MAD1L1 PE=1 SV=2

 Score = 87.0 bits (214), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 153/621 (24%), Positives = 293/621 (47%), Gaps = 105/621 (16%)

Query: 161 RKAESAAASAEEKASLLEGKLTHLSDSI---EREKKRLNNEVTQLKRESKSSISRIGADL 217
           R+ E + A A E  + L+G+++ L  S+   E   KRL +E  +L+ +          DL
Sbjct: 146 REKEDSLAQAGETINALKGRISELQWSVMDQEMRVKRLESEKQELQEQ---------LDL 196

Query: 218 EKMECRAQN-------AEKESEM-LKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFST 269
           +  +C+  N       A +E+    + Q+KDL+++L+    Q + + K + S        
Sbjct: 197 QHKKCQEANQKIQELQASQEARADHEQQIKDLEQKLS-LQEQDAAIVKNMKSEL------ 249

Query: 270 TDSNILVKHLQEEIRNYEAEVREARKLKASYENTELLKEKLLEEKSRRERVEQELAKLRE 329
               + +  L+ E++    E    R+++   E   LL+E+L       E ++++L +  +
Sbjct: 250 ----VRLPRLERELKQLREESAHLREMR---ETNGLLQEEL-------EGLQRKLGRQEK 295

Query: 330 VQQSMDQLEDE-------LSSWKFLIRDIP-GVSCSEDIPVKFAALQKEVIDSMMKLGEA 381
           +Q+++  LE E       L SW+ L + +   +   ED+      LQ+  +     L + 
Sbjct: 296 MQETLVGLELENERLLAKLQSWERLDQTMGLSIRTPEDLSRFVVELQQREL----ALKDK 351

Query: 382 NAQLKQMEVALDAA--QLGKQSAETEAALVKE--KEEVSKSEVKRIESMLSVVTEERDKL 437
           N+ +      L+ A  QL ++  +    L++E  K E  ++  +R++  + ++T+ERD +
Sbjct: 352 NSAVTSSARGLEKARQQLQEELRQVSGQLLEERKKRETHEALARRLQKRVLLLTKERDGM 411

Query: 438 RNVVNEFKKPKNDGGGDERANLTL-TKELESSLAKKEEFIEELESNL-HAQQEINS-RQR 494
           R ++  +         +    LT   +E E  + K      E+E+ L  A +E+   +QR
Sbjct: 412 RAILGSYDSELTPA--EYSPQLTRRMREAEDMVQKVHSHSAEMEAQLSQALEELGGQKQR 469

Query: 495 D-----EIKSLSEKLNNEER--------------RIKSLERENDRLRSEISLLESKLG-- 533
                 E+K L  + ++ E+              +++ LE E  RL  E  +LE++L   
Sbjct: 470 ADMLEMELKMLKSQSSSAEQSFLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERR 529

Query: 534 --HGDFSSENTKVLRM-VNTLAVDNEAKQTIE----ALQTELQKTKEKLQAVEELKSQSG 586
              GD+    TKVL M +N  +V   A+Q +      LQ E ++ +  L+A+E   +   
Sbjct: 530 ALQGDYDQSRTKVLHMSLNPTSV---ARQRLREDHSQLQAECERLRGLLRAMERGGTVPA 586

Query: 587 DTGKLVDSYISGK-ITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKI-VMDE 644
           D      S  S K + +LK+Q+ + E + +R K VF  +I  FR+AC  L GY+I +  E
Sbjct: 587 DLEAAAASLPSSKEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACYTLTGYQIDITTE 646

Query: 645 HQRANGIPVTHFTLQSIYAQGDDEKLEFEYES-SNTNIMVNDYTSQPEISRQVDIFVRKM 703
           +Q         + L S+YA+   + L F+  S S + + + +      +   +++ +R+ 
Sbjct: 647 NQ---------YRLTSLYAEHPGDCLIFKATSPSGSKMQLLETEFSHTVGELIEVHLRRQ 697

Query: 704 NSIPAFTANLTVESFNRRTLS 724
           +SIPAF ++LT+E F+R+T++
Sbjct: 698 DSIPAFLSSLTLELFSRQTVA 718

Component of the spindle-assembly checkpoint that prevents the onset of anaphase until all chromosomes are properly aligned at the metaphase plate. May recruit MAD2L1 to unattached kinetochores. Has a role in the correct positioning of the septum. Required for anchoring MAD2L1 to the nuclear periphery. Binds to the TERT promoter and represses telomerase expression, possibly by interfering with MYC binding.
Homo sapiens (taxid: 9606)

>sp|Q80YF0|MD1L1_CRIGR Mitotic spindle assembly checkpoint protein MAD1 OS=Cricetulus griseus GN=MAD1L1 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 153/619 (24%), Positives = 289/619 (46%), Gaps = 106/619 (17%)

Query: 161 RKAESAAASAEEKASLLEGKLTHLSDSIEREK---KRLNNEVTQLKRESKSSISRIGADL 217
           R+ E   A+A E  S L+G+++ +  +   +K   KRL +E  +LK +          +L
Sbjct: 146 REREDGLAAARETISSLKGRVSEMQLNAMDQKVQVKRLESEKQELKEQ---------LEL 196

Query: 218 EKMECR--------AQNAEKESEMLKNQMKDLKEQLNECLN-QKSEVEKKLSSSTFQEFS 268
           ++ +C+         Q +++E    + ++KDL+++L  CL  Q + V K + S   +   
Sbjct: 197 QQRKCQEASQKIQELQASQEERADHEQKIKDLEQKL--CLQEQDAAVVKNMKSELLR--- 251

Query: 269 TTDSNILVKHLQEEIRNYEAEVREARKLKASYENTELLKEKLLEEKSRRERVEQELAKLR 328
                  +  ++ E++    E    R++K   E   LL E+L       E ++++L +  
Sbjct: 252 -------LPRMERELKRLREENTHLREMK---ETNGLLTEEL-------EGLQRKLGRQE 294

Query: 329 EVQQSMDQLEDE-------LSSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEA 381
           ++Q+++  LE E       L SW+ L + + GV+     P   +    E+    + L E 
Sbjct: 295 KMQEALVDLELEKEKLLAKLQSWEKLDQTM-GVNLR--TPEDLSRFVVELQQRELTLKEK 351

Query: 382 NAQLKQMEVALDAAQ--LGKQSAETEAALVKE--KEEVSKSEVKRIESMLSVVTEERDKL 437
           N  +      L+ AQ  L  +  +  A L++E  K E+ ++  +R++  + ++T+ERD +
Sbjct: 352 NNTITSSARGLEKAQQQLQDEVRQVSAQLLEERKKREIHEALARRLQKRIVLLTKERDGM 411

Query: 438 RNVVNEFKKPKNDGGGDERANLT-LTKELESSLAKKEEFIEELESNL-HAQQEIN-SRQR 494
           R ++  +         +  A LT    E E  + K      E+E+ L  A +E+   +QR
Sbjct: 412 RAILGSYDSELTQA--EYSAQLTQRMWEAEDMVQKVHAHSSEMETQLSQALEELGVQKQR 469

Query: 495 D-----EIKSLSEKLNNEER--------------RIKSLERENDRLRSEISLLESKLG-- 533
                 E+K L  + ++ E               +++ LE E  RL  E   LE ++   
Sbjct: 470 ADTLEMELKMLRAQTSSAETSFPFCKEEVDALRLKVEELEGERSRLEQEKQALEMQMERL 529

Query: 534 --HGDFSSENTKVLRM-VNTLAVDNEAKQTIEA-LQTELQKTKEKLQAVEELKSQSGDTG 589
              GD++   TKVL M +N  ++  + +Q   A LQ E ++ +  + A+E       D  
Sbjct: 530 TLQGDYNQSRTKVLHMSLNPASMARKRQQEDHARLQGECERLRGLVHALERGGPIPADL- 588

Query: 590 KLVDSYISGK-ITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKI-VMDEHQR 647
           ++  S  S K + +L++Q+ + E + +R K VF  +I  FR+ C  L GY+I V  E+Q 
Sbjct: 589 EVASSLPSSKEVAELRKQVESAELKNQRLKEVFQTKIQEFRKVCYTLTGYQIDVTTENQ- 647

Query: 648 ANGIPVTHFTLQSIYAQGDDEKLEFEY---ESSNTNIMVNDYT-SQPEISRQVDIFVRKM 703
                   + L S YA+   + L F+      S   ++  +++ S PE+   +++ + + 
Sbjct: 648 --------YRLTSRYAEHQSDCLIFKATGPSGSKMQLLETEFSRSVPEL---IELHLLQQ 696

Query: 704 NSIPAFTANLTVESFNRRT 722
           +SIPAF + LT+E F+R+T
Sbjct: 697 DSIPAFLSALTIELFSRQT 715

Component of the spindle-assembly checkpoint that prevents the onset of anaphase until all chromosomes are properly aligned at the metaphase plate. May recruit MAD2L1 to unattached kinetochores. Has a role in the correct positioning of the septum. Required for anchoring MAD2L1 to the nuclear periphery. Binds to the TERT promoter and represses telomerase expression, possibly by interfering with MYC binding.

Cricetulus griseus (taxid: 10029)

>sp|Q9WTX8|MD1L1_MOUSE Mitotic spindle assembly checkpoint protein MAD1 OS=Mus musculus GN=Mad1l1 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 154/623 (24%), Positives = 292/623 (46%), Gaps = 114/623 (18%)

Query: 161 RKAESAAASAEEKASLLEGKLTHLSDSIEREK---KRLNNEVTQLK----------RESK 207
           R+ E + ASA E  S L+G+++ L  S   +K   KRL +E  +LK          +E+ 
Sbjct: 146 REQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEAN 205

Query: 208 SSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLN-QKSEVEKKLSSSTFQE 266
             I  + A  ++   RA++ +K        +KDL+++L  CL  Q + V K + S   + 
Sbjct: 206 QKIQELQASQDE---RAEHEQK--------IKDLEQKL--CLQEQDAAVVKSMKSELMR- 251

Query: 267 FSTTDSNILVKHLQEEIRNYEAEVREARKLKASYENTELLKEKL--LEEK-SRRERVEQE 323
                    +  ++ E++    E    R++K   E   LL E+L  L+ K SR+E++++ 
Sbjct: 252 ---------MPRMERELKRLHEENTHLREMK---ETNGLLTEELEGLQRKLSRQEKMQEA 299

Query: 324 LAKLREVQQSMDQLEDELSSWKFLIRDIP-GVSCSEDIPVKFAALQKEVIDSMMKLGEAN 382
           L  L E+++  ++L  +L SW+ L + +   +   ED+      LQ+  +     L E N
Sbjct: 300 LVDL-ELEK--EKLLAKLQSWENLDQTMGLNLRTPEDLSRFVVELQQRELT----LKEKN 352

Query: 383 AQLKQMEVALDAAQ--LGKQSAETEAALVKE--KEEVSKSEVKRIESMLSVVTEERDKLR 438
             +      L+  Q  L  +  +  A L++E  K E  ++  +R++   +++T+ERD +R
Sbjct: 353 NSITSSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQKRNALLTKERDGMR 412

Query: 439 NVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEFIE-------ELESNL-HAQQEIN 490
            ++  +          E      + +L   L + E+ ++       E+E+ L  A +E+ 
Sbjct: 413 AILGSY--------DSELTQTEYSTQLTQRLWEAEDMVQKVHAHSSEMEAQLSQALEELG 464

Query: 491 -SRQRD-----EIKSLSEKLNNEER--------------RIKSLERENDRLRSEISLLES 530
             +QR      E+K L  + ++ E               +++ LE E  RL  E  +LE 
Sbjct: 465 VQKQRADTLEMELKMLKAQTSSAESSFSFCKEEVDALRLKVEELEGERSRLEQEKQVLEM 524

Query: 531 KLG----HGDFSSENTKVLRM-VNTLAVDNEAK-QTIEALQTELQKTKEKLQAVEELKSQ 584
           ++      GD++   TKVL M +N +++  + + +  + LQ E ++ +  + A+E     
Sbjct: 525 QMEKLTLQGDYNQSRTKVLHMSLNPISMARQRQHEDHDRLQEECERLRGLVHALERGGPI 584

Query: 585 SGDTGKLVDSYISGKITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKI-VMD 643
             D         S ++ +L++Q+ + E + +R K VF  +I  FR+ C  L GY+I V  
Sbjct: 585 PADLEAASSLPSSKEVAELRKQVESAELKNQRLKEVFQTKIQEFRKVCYTLTGYQIDVTT 644

Query: 644 EHQRANGIPVTHFTLQSIYAQGDDEKLEFEY---ESSNTNIMVNDYT-SQPEISRQVDIF 699
           E Q         + L S YA+   + L F+      S   ++  +++ S PE+   +++ 
Sbjct: 645 ESQ---------YRLTSRYAEHQTDCLIFKATGPSGSKMQLLETEFSRSVPEL---IELH 692

Query: 700 VRKMNSIPAFTANLTVESFNRRT 722
           + + +SIPAF + LT+E F+R+T
Sbjct: 693 LLQQDSIPAFLSALTIELFSRQT 715

Component of the spindle-assembly checkpoint that prevents the onset of anaphase until all chromosomes are properly aligned at the metaphase plate. May recruit MAD2L1 to unattached kinetochores. Has a role in the correct positioning of the septum. Required for anchoring MAD2L1 to the nuclear periphery. Binds to the TERT promoter and represses telomerase expression, possibly by interfering with MYC binding.

Mus musculus (taxid: 10090)

>sp|Q6C452|MAD1_YARLI Spindle assembly checkpoint component MAD1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=MAD1 PE=3 SV=1

 Score = 49.7 bits (117), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 10/121 (8%)

Query: 603 LKEQIATLEKREERYKTVFADRISVFRRACCELFGYKIVMDEHQRANGIPVTHFTLQSIY 662
           +++++A+ EK  +R K VF+ +   FR A   L GY+I +    R   + VT     S+Y
Sbjct: 584 VRDKLASTEKSYQRLKEVFSVKSLEFREAVYALTGYQIDI---LRNKKVKVT-----SMY 635

Query: 663 AQGDDEKLEFEYESSNTNIM--VNDYTSQPEISRQVDIFVRKMNSIPAFTANLTVESFNR 720
           AQ D++   F  + ++      V D     E S  VD +V+     P F A L +E + R
Sbjct: 636 AQSDEDSFTFLPDPNHKGQFAGVIDSPLTDEFSNIVDYWVKDKKDFPCFLAALNLELYER 695

Query: 721 R 721
           +
Sbjct: 696 K 696

Central component of the spindle assembly checkpoint.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|O08638|MYH11_MOUSE Myosin-11 OS=Mus musculus GN=Myh11 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 124/479 (25%), Positives = 222/479 (46%), Gaps = 74/479 (15%)

Query: 96   AEAERKKFRDQFLYAEQELAAAKGREGVLQEQ---LLKEVDDSRERLK-------KQIQL 145
            AEA+ KK  D  L  + + +       +L+E+   L   + +  E+ K       K   +
Sbjct: 976  AEAKIKKLEDDILVMDDQNSKLSKERKLLEERVSDLTTNLAEEEEKAKNLTKLKSKHESM 1035

Query: 146  CSELEA------KHRNEL-NLRRKAESAAASAEEKASLLEGKLTHLSDSIEREKK----- 193
             SELE       K R EL  L+RK E  A+   E+ + L+ ++  L   + ++++     
Sbjct: 1036 ISELEVRLKKEEKSRQELEKLKRKLEGDASDFHEQIADLQAQIAELKMQLAKKEEELQAA 1095

Query: 194  --RLNNEVTQ----LK--RESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQL 245
              RL+ E+ Q    LK  RE +  IS +  DL+        AEK+   L  +++ LK +L
Sbjct: 1096 LARLDEEIAQKNNALKKIRELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTEL 1155

Query: 246  NECLNQKSEVEKKLSSSTFQEFSTT---DSNILVKHLQEEIRNYEAEVREARK--LKASY 300
             + L+         S++T QE       +  +L K L EE R++EA+V+E R+   +A  
Sbjct: 1156 EDTLD---------STATQQELRAKREQEVTVLKKALDEETRSHEAQVQEMRQKHTQAVE 1206

Query: 301  ENTELLKEKLLEEKSRRERVEQELAK--------LREVQQSMDQLEDELSSWKFLIRDIP 352
            E TE L E+    K+  ++ +Q L K        LR + Q+  ++E +    +  ++D+ 
Sbjct: 1207 ELTEQL-EQFKRAKANLDKSKQTLEKENADLAGELRVLGQAKQEVEHKKKKLEVQLQDLQ 1265

Query: 353  GVSCSE------DIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEA 406
               CS+      ++  K   LQ EV      L EA    K +++A D A LG Q  +T+ 
Sbjct: 1266 S-KCSDGERARAELSDKVHKLQNEVESVTGMLNEAEG--KAIKLAKDVASLGSQLQDTQE 1322

Query: 407  ALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELE 466
             L    +E ++ ++  + + L  + +ER+ L++ ++E  + K +    ER   TL  +L 
Sbjct: 1323 LL----QEETRQKLN-VSTKLRQLEDERNSLQDQLDEEMEAKQNL---ERHVSTLNIQLS 1374

Query: 467  SSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEI 525
             S  K ++F     S +   +E   R + E++ LS++   +      LE+  +RL+ E+
Sbjct: 1375 DSKKKLQDFA----STIEVMEEGKKRLQKEMEGLSQQYEEKAAAYDKLEKTKNRLQQEL 1429

Muscle contraction.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	724
255573824	728	Spindle assembly checkpoint component ma	0.993	0.987	0.756	0.0
225465267	717	PREDICTED: uncharacterized protein LOC10	0.987	0.997	0.751	0.0
224120018	729	predicted protein [Populus trichocarpa]	0.990	0.983	0.745	0.0
449449214	727	PREDICTED: uncharacterized protein LOC10	0.995	0.991	0.719	0.0
356563527	703	PREDICTED: spindle assembly checkpoint c	0.953	0.981	0.712	0.0
356522119	701	PREDICTED: spindle assembly checkpoint c	0.950	0.981	0.727	0.0
15240571	726	mitotic spindle assembly checkpoint prot	0.995	0.993	0.656	0.0
297792269	726	mitotic checkpoint family protein [Arabi	0.995	0.993	0.656	0.0
125572840	724	hypothetical protein OsJ_04275 [Oryza sa	0.984	0.984	0.540	0.0
115441387	720	Os01g0877300 [Oryza sativa Japonica Grou	0.979	0.984	0.540	0.0

>gi|255573824|ref|XP_002527831.1| Spindle assembly checkpoint component mad1, putative [Ricinus communis] gi|223532755|gb|EEF34534.1| Spindle assembly checkpoint component mad1, putative [Ricinus communis]

 Score = 1066 bits (2756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/731 (75%), Positives = 629/731 (86%), Gaps = 12/731 (1%)

Query: 1   MILRTPPPKRPRDAAGEPIIECPPTAGGSDRR--LVIYEDPSPA------GRESSHQPSD 52
           MILRTPPPKRPRD      IE  P   GSDRR  L+IYEDP+             HQPSD
Sbjct: 1   MILRTPPPKRPRDDV--KAIETSPV--GSDRRQPLIIYEDPAVIVQHPDDSSHEPHQPSD 56

Query: 53  HLLCTYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQ 112
           H+LCTYQCRQMVKSDF DAL+N EKQ  DYQSKLE LNENFSKA+AERKKFRDQFLYAEQ
Sbjct: 57  HMLCTYQCRQMVKSDFFDALSNAEKQASDYQSKLETLNENFSKADAERKKFRDQFLYAEQ 116

Query: 113 ELAAAKGREGVLQEQLLKEVDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEE 172
           ELAAAKGRE  LQEQLLKE++DS+ERLKKQ++ CS+LE K  NE+ LR+KAES+A SAEE
Sbjct: 117 ELAAAKGREKALQEQLLKEINDSQERLKKQLESCSKLEIKLENEMKLRKKAESSATSAEE 176

Query: 173 KASLLEGKLTHLSDSIEREKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESE 232
           KAS+LEGKL HLS+SIE+EKKRLNNE+ QL+R+SK S+SRI AD EKMECRA+NAEKESE
Sbjct: 177 KASVLEGKLAHLSESIEKEKKRLNNELVQLQRDSKLSVSRITADHEKMECRAKNAEKESE 236

Query: 233 MLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVRE 292
           +LK Q++DLK QL+ECL+QK E+EKKLSS   QE S+T+ NILVKHLQEE+RN E+EVRE
Sbjct: 237 LLKAQLEDLKLQLSECLHQKGELEKKLSSFAIQEGSSTEGNILVKHLQEELRNCESEVRE 296

Query: 293 ARKLKASYENTELLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIP 352
           ARKLK+SYEN ELLKEKLLEEKSRRER E EL+K +E++ +M  LEDELSSWK LI++IP
Sbjct: 297 ARKLKSSYENVELLKEKLLEEKSRRERAESELSKFQELELNMRNLEDELSSWKSLIKEIP 356

Query: 353 GVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEK 412
            VSC +DIP+KFAALQKE+ID+MMK+GEANA++KQMEVALDAA LGKQ+AETE A  KEK
Sbjct: 357 NVSCCDDIPLKFAALQKEMIDNMMKVGEANARVKQMEVALDAAHLGKQNAETEVASAKEK 416

Query: 413 EEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKK 472
            +  K EV +IE ML  VTEERD L+N+V+E ++ KN+  GDE A+ TL +E ESSL KK
Sbjct: 417 AKRLKLEVNQIELMLCTVTEERDGLKNIVDELRRSKNEQAGDESASGTLLQEFESSLLKK 476

Query: 473 EEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKL 532
           E +I+ELESNLH Q+E ++RQ DEIK L+++LNNE RR KSLERE+DRLRSEISLLESKL
Sbjct: 477 ECYIKELESNLHEQKEASNRQLDEIKLLNDRLNNEARRFKSLERESDRLRSEISLLESKL 536

Query: 533 GHGDFSSENTKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQAVEELKSQSGDTGKLV 592
           GHGDFS+ NTKVLRMVNTL VDN+AKQTIEAL+TEL+KTKEKLQAVEELKSQSGD GKLV
Sbjct: 537 GHGDFSAANTKVLRMVNTLGVDNDAKQTIEALRTELEKTKEKLQAVEELKSQSGDAGKLV 596

Query: 593 DSYISGKITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKIVMDEHQRANGIP 652
           DSYISGKITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKIVMDEHQR+NGIP
Sbjct: 597 DSYISGKITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKIVMDEHQRSNGIP 656

Query: 653 VTHFTLQSIYAQGDDEKLEFEYESSNTNIMVNDYTSQPEISRQVDIFVRKMNSIPAFTAN 712
           VT FTLQSIYAQ +DEKLEFEYES NTNI+ N YTSQ EISRQVDIF+ KMNSIPAFTAN
Sbjct: 657 VTRFTLQSIYAQSEDEKLEFEYESGNTNILANAYTSQSEISRQVDIFIHKMNSIPAFTAN 716

Query: 713 LTVESFNRRTL 723
           LTVESFN+RTL
Sbjct: 717 LTVESFNKRTL 727

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465267|ref|XP_002269253.1| PREDICTED: uncharacterized protein LOC100262667 [Vitis vinifera]

 Score = 1033 bits (2671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/724 (75%), Positives = 619/724 (85%), Gaps = 9/724 (1%)

Query: 1   MILRTPPPKRPRDAAGEPIIECPPTAGGSDRRLVIYEDPSPAGRESSHQPSDHLLCTYQC 60
           MILRTPPP++ R           P + GSDRRLVIYEDP P   ESSH PS+ +LCTYQC
Sbjct: 1   MILRTPPPRKRRADDSRA-----PESPGSDRRLVIYEDPVP---ESSHGPSEQMLCTYQC 52

Query: 61  RQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGR 120
           RQMVK++FL++L + EKQVRDYQS+LE  NENF KAEA+RKKFRDQF YAEQELAA KGR
Sbjct: 53  RQMVKAEFLESLNSAEKQVRDYQSRLEASNENFCKAEADRKKFRDQFFYAEQELAAVKGR 112

Query: 121 EGVLQEQLLKEVDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGK 180
           E  LQEQLLKEV+DS+ R KKQIQ  SELE K +NE+NLR+ AES+AA AEEKAS LEGK
Sbjct: 113 EKALQEQLLKEVNDSKGRFKKQIQSYSELEGKLQNEMNLRKNAESSAALAEEKASALEGK 172

Query: 181 LTHLSDSIEREKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKD 240
           L+  S+SIEREKKRL  E+ QLKRESK S+SRI ADLE+MECRA NAEKESE+LK Q+++
Sbjct: 173 LSQFSESIEREKKRLQYELAQLKRESKLSVSRISADLERMECRANNAEKESELLKEQLEE 232

Query: 241 LKEQLNECLNQKSEVEKKLSSSTFQEFSTT-DSNILVKHLQEEIRNYEAEVREARKLKAS 299
           LK QLNECL+QKSE EKKLSS T QE +T+ +S+ILVKHLQEE+RNY  EVREARKLK+S
Sbjct: 233 LKSQLNECLHQKSEAEKKLSSCTSQEVTTSMESDILVKHLQEELRNYGFEVREARKLKSS 292

Query: 300 YENTELLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGVSCSED 359
           +EN ELLKEKLLEEK RRER E EL KL E+Q SM +LEDEL SWK +++DIPGVSCS+D
Sbjct: 293 HENIELLKEKLLEEKGRRERAESELLKLPEIQLSMKKLEDELLSWKLMVKDIPGVSCSDD 352

Query: 360 IPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEEVSKSE 419
           +P+KFAALQKEVI+ MMKLGEANA+LKQMEV+LDAA+  KQ+AETEAA  KE  EVSKSE
Sbjct: 353 VPMKFAALQKEVIEGMMKLGEANARLKQMEVSLDAAEHAKQNAETEAASAKESSEVSKSE 412

Query: 420 VKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEFIEEL 479
           VKRIE ML +VTEERD+LRN +NE KK KN   GDE  N TL +E E SLAKKE  I+EL
Sbjct: 413 VKRIELMLGLVTEERDQLRNAINELKKQKNVEAGDETKNGTLLQEFELSLAKKENCIKEL 472

Query: 480 ESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLGHGDFSS 539
           E+NL  Q+E+N+R+ +EIK L+EKLNNE RRIKSLERE DRLRSEISLLESKLGHGDFS+
Sbjct: 473 ENNLCEQKEVNNRRFNEIKLLNEKLNNEARRIKSLEREGDRLRSEISLLESKLGHGDFSA 532

Query: 540 ENTKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQAVEELKSQSGDTGKLVDSYISGK 599
            NTKVLRMVNTLAVDNEAKQTIEALQTELQK KEKL+A+EELK+QS D+GKLVDSY++GK
Sbjct: 533 TNTKVLRMVNTLAVDNEAKQTIEALQTELQKAKEKLEAIEELKTQSADSGKLVDSYVAGK 592

Query: 600 ITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKIVMDEHQRANGIPVTHFTLQ 659
           I Q KEQIATLEKREERYKTVFADRISVFRRACCELFGYKIVMD+HQR NGIPVT FTLQ
Sbjct: 593 IVQFKEQIATLEKREERYKTVFADRISVFRRACCELFGYKIVMDDHQRPNGIPVTRFTLQ 652

Query: 660 SIYAQGDDEKLEFEYESSNTNIMVNDYTSQPEISRQVDIFVRKMNSIPAFTANLTVESFN 719
           SIYAQ DDEKLEFEYES NTNI+ N YTSQPEIS+QV+IF++K+NSIPAFTANLTVESFN
Sbjct: 653 SIYAQSDDEKLEFEYESGNTNILANAYTSQPEISQQVEIFIQKLNSIPAFTANLTVESFN 712

Query: 720 RRTL 723
           +RTL
Sbjct: 713 KRTL 716

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120018|ref|XP_002331116.1| predicted protein [Populus trichocarpa] gi|222872844|gb|EEF09975.1| predicted protein [Populus trichocarpa]

 Score =  999 bits (2582), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/736 (74%), Positives = 625/736 (84%), Gaps = 19/736 (2%)

Query: 1   MILRTPPPKRPR----DAAGEPIIECPPTAGGSDRRLVIYEDPSPAGRESSHQPSDH--L 54
           MILRTPP KR R    DA   PIIE P +    D  LVIYED +         P  H   
Sbjct: 1   MILRTPPAKRARGGAADANARPIIESPQSEHHRDNHLVIYEDNNTP-------PLQHEQF 53

Query: 55  LCTYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQEL 114
           LCTYQCRQ+VKSDF+DAL++ EKQV+DYQSKL+E+NENF+ +E ERKKFRD+ L  EQ+L
Sbjct: 54  LCTYQCRQLVKSDFIDALSSAEKQVQDYQSKLQEINENFTISEGERKKFRDKLLQTEQQL 113

Query: 115 AAAKGREGVLQEQLLKEVDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKA 174
           AAAKGRE  LQ+QLLKEV+ ++ER KKQ++  + LE K  NE NLR+KAES+AASAEEKA
Sbjct: 114 AAAKGREHALQQQLLKEVNVNQERFKKQLESHANLEVKLENEKNLRQKAESSAASAEEKA 173

Query: 175 SLLEGKLTHLSDSIEREKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEML 234
           S+LEGKL HLS+SIEREKKRLN E+ QL RESK S+SRI ADLEKMECRA++AEKESE+ 
Sbjct: 174 SVLEGKLGHLSESIEREKKRLNTELAQLNRESKHSVSRIRADLEKMECRAKHAEKESELW 233

Query: 235 KNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREAR 294
           K Q++DLK QL EC +Q+SE+EKKLSS TFQE S+TDSNILVKHLQEE+RN+E EVREAR
Sbjct: 234 KEQLEDLKRQLTECSHQRSELEKKLSSFTFQEGSSTDSNILVKHLQEELRNFETEVREAR 293

Query: 295 KLKASYENTELLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGV 354
           K+++S+E+ ELLKEKLLEEK RRER E E +KL E + +M +LEDE+SSWK  I DIPGV
Sbjct: 294 KIRSSHESIELLKEKLLEEKGRRERAESESSKLLEFELNMKKLEDEMSSWKLAIEDIPGV 353

Query: 355 SCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEE 414
           S  +DIPVKFAALQKEVID+MMK GEANA  KQMEVAL+ AQLGKQ+AE EAAL KEK E
Sbjct: 354 SSYDDIPVKFAALQKEVIDNMMKAGEANAHFKQMEVALETAQLGKQNAEAEAALAKEKAE 413

Query: 415 VSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEE 474
             K EVK+IE MLS+VTEERD+L+NVVNE K+PKND GGDE A+  L +ELESSLA+KE 
Sbjct: 414 ALKLEVKQIELMLSMVTEERDRLKNVVNELKRPKNDQGGDEAASGVLLQELESSLAQKEF 473

Query: 475 FIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLGH 534
            I+ELESNLHAQ+E+NSRQ +EIK+L++ L+NE RRIKSLERE+DRLR+EISLLESKLGH
Sbjct: 474 CIKELESNLHAQKEVNSRQLEEIKTLNDMLHNEARRIKSLERESDRLRAEISLLESKLGH 533

Query: 535 GDFSSENTKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQAVEELKSQSGDTGKLVDS 594
           GDFS+ NTKVLRMVNTLAVDNEAKQTIEAL+TELQKTKEKLQAVEELKSQSGD GKLVDS
Sbjct: 534 GDFSAANTKVLRMVNTLAVDNEAKQTIEALRTELQKTKEKLQAVEELKSQSGDAGKLVDS 593

Query: 595 YISGKITQLKEQIATLEKREER------YKTVFADRISVFRRACCELFGYKIVMDEHQRA 648
           YISGKITQLKEQIATLEKREER      YKTVFADRISVFRRACCELFGYKIVMDEHQR+
Sbjct: 594 YISGKITQLKEQIATLEKREERRVMFTKYKTVFADRISVFRRACCELFGYKIVMDEHQRS 653

Query: 649 NGIPVTHFTLQSIYAQGDDEKLEFEYESSNTNIMVNDYTSQPEISRQVDIFVRKMNSIPA 708
           NGIPVT FTLQS+YAQ DDEKLEFEYES NTNI+ NDYTSQP+ISRQVDIF+RKMNSIPA
Sbjct: 654 NGIPVTRFTLQSVYAQSDDEKLEFEYESGNTNILANDYTSQPDISRQVDIFIRKMNSIPA 713

Query: 709 FTANLTVESFNRRTLS 724
           FTANLTVESFNRRTLS
Sbjct: 714 FTANLTVESFNRRTLS 729

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449214|ref|XP_004142360.1| PREDICTED: uncharacterized protein LOC101211260 [Cucumis sativus] gi|449492707|ref|XP_004159077.1| PREDICTED: uncharacterized protein LOC101227800 [Cucumis sativus]

 Score =  998 bits (2580), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/730 (71%), Positives = 611/730 (83%), Gaps = 9/730 (1%)

Query: 1   MILRTPPPKRPR-DAAGEPIIECPPTAGGSDRRLVIYEDP---SPAGRE--SSHQPSDHL 54
           MI+RTPPPK+ R D    P  +  P A  SD  LVIYEDP    PA  E  SSH+PSDH+
Sbjct: 1   MIVRTPPPKKQRSDVTSLP--DSSP-AAASDLPLVIYEDPLPLVPATTEPASSHEPSDHM 57

Query: 55  LCTYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQEL 114
           LCTYQCRQMVKSDFLDAL+N EKQV DY+ KL  LNEN SK E+ERKKF DQ LY EQEL
Sbjct: 58  LCTYQCRQMVKSDFLDALSNAEKQVHDYELKLGVLNENLSKVESERKKFLDQLLYTEQEL 117

Query: 115 AAAKGREGVLQEQLLKEVDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKA 174
           AAA+ RE VLQEQL+KE+ DS ERLKKQ+Q+ SELE + +NE NLR KAES+ AS+EEKA
Sbjct: 118 AAARRREKVLQEQLIKEISDSGERLKKQMQISSELEVRLQNESNLRIKAESSIASSEEKA 177

Query: 175 SLLEGKLTHLSDSIEREKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEML 234
            LLE KL HLS+SIERE+K L+ E+ QLK ESK S+SRI ADLEKM CRA NAEKESE+L
Sbjct: 178 RLLEDKLNHLSESIERERKHLDTELAQLKGESKLSVSRINADLEKMVCRASNAEKESELL 237

Query: 235 KNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREAR 294
           K Q++DLK QLNECL QKSE+EKKL+S T  E +  +SNIL+KHLQEE+RNYE+EV+EAR
Sbjct: 238 KGQLEDLKNQLNECLCQKSELEKKLASFTVNEGTGKESNILIKHLQEELRNYESEVKEAR 297

Query: 295 KLKASYENTELLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGV 354
           KLK+S  +  LLKEKLLEEK+RRER + EL+KL+++Q S+  LEDEL+    LI  IPG+
Sbjct: 298 KLKSSLGDIGLLKEKLLEEKARRERADSELSKLQDIQLSVKNLEDELTRRDLLINSIPGI 357

Query: 355 SCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEE 414
           S  EDIP K ++LQKEVID+ +K+GE NA+LKQ+EVALDAAQ+ KQ AE+EA LV+EK E
Sbjct: 358 STYEDIPTKISSLQKEVIDNTIKMGEVNARLKQLEVALDAAQIDKQKAESEATLVEEKIE 417

Query: 415 VSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEE 474
             K EVK+ E +LSV TEERDKL+++VNE K  KND    +    TL++EL+ +LAKK+ 
Sbjct: 418 ALKLEVKQNELLLSVATEERDKLKSLVNELKTLKNDDAEAKETKETLSQELDLTLAKKDW 477

Query: 475 FIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLGH 534
           +I+ELESNLH Q+E+NSRQ DE+K L+E+LNN+ +RIKSLER+ DRLRSEISLLESK+GH
Sbjct: 478 YIKELESNLHEQKEVNSRQHDELKLLNERLNNDAKRIKSLERDCDRLRSEISLLESKIGH 537

Query: 535 GDFSSENTKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQAVEELKSQSGDTGKLVDS 594
           GDFSS NTKVLRMVNTLAVDNEAKQTIEAL++ELQKTKEKLQAVEELK+ SGD GKLVDS
Sbjct: 538 GDFSSTNTKVLRMVNTLAVDNEAKQTIEALKSELQKTKEKLQAVEELKAPSGDAGKLVDS 597

Query: 595 YISGKITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKIVMDEHQRANGIPVT 654
           YISGKI QLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKIVMDEHQRA+GIPVT
Sbjct: 598 YISGKIMQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKIVMDEHQRADGIPVT 657

Query: 655 HFTLQSIYAQGDDEKLEFEYESSNTNIMVNDYTSQPEISRQVDIFVRKMNSIPAFTANLT 714
            FTLQSIYAQ DDEKL+FEYES NTNI+VN+YTSQPE+SRQV+IF+RKMNSIPAFTANLT
Sbjct: 658 RFTLQSIYAQSDDEKLQFEYESGNTNILVNNYTSQPELSRQVEIFIRKMNSIPAFTANLT 717

Query: 715 VESFNRRTLS 724
           VESFNRRTLS
Sbjct: 718 VESFNRRTLS 727

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563527|ref|XP_003550013.1| PREDICTED: spindle assembly checkpoint component mad1-like [Glycine max]

 Score =  976 bits (2524), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/699 (71%), Positives = 588/699 (84%), Gaps = 9/699 (1%)

Query: 26  AGGSDRRLVIYEDPSPAGRESSHQPSDHLLCTYQCRQMVKSDFLDALTNVEKQVRDYQSK 85
           A G D +LVIYEDP       S  PS+ +LCTYQCRQMVKSDF+DAL+  E Q R YQSK
Sbjct: 14  ADGDDGQLVIYEDPP-----ESSPPSEQMLCTYQCRQMVKSDFIDALSKAENQARHYQSK 68

Query: 86  LEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQLLKEVDDSRERLKKQIQL 145
            E L  +F K E+ERKKF+DQFLYA+QELAAAKGRE  LQ+QLLKE   S+ERL+KQIQL
Sbjct: 69  FETLEPHFRKVESERKKFQDQFLYAQQELAAAKGREQALQDQLLKEATQSQERLRKQIQL 128

Query: 146 CSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLSDSIEREKKRLNNEVTQLKRE 205
            ++L+ K +NE +LR+KA+S AAS EEKA+ LEGKL HLS+SIEREKKRL++E +QLK +
Sbjct: 129 NTQLQVKLQNETDLRQKADSHAASTEEKAASLEGKLGHLSESIEREKKRLHDEHSQLKSD 188

Query: 206 SKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQ 265
           S  SISRI A+LE+MECRA NAEKE+E+LK Q+K LK+QL+ECL+QK EVEKKLS+   Q
Sbjct: 189 SNLSISRISANLEQMECRANNAEKEAELLKEQLKHLKDQLDECLHQKIEVEKKLSTLMSQ 248

Query: 266 EFSTTDSNILVKHLQEEIRNYEAEVREARKLKASYENTELLKEKLLEEKSRRERVEQELA 325
           E ++T+SN+LVKHLQ+E+RNYE+EVREARKL +S+EN ELLKEK+LEEKS RER E EL+
Sbjct: 249 EVASTESNVLVKHLQQELRNYESEVREARKLSSSHENIELLKEKILEEKSHRERAESELS 308

Query: 326 KLREVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQL 385
           KL+++Q +M +LED++SSW+ +I DIPGVSC ED+PVKFAALQKEVI    K GE  A+L
Sbjct: 309 KLQDIQLNMKKLEDQISSWRVMITDIPGVSCFEDLPVKFAALQKEVIYGTQKEGEITARL 368

Query: 386 KQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFK 445
           KQMEVALDAA++GKQ+AE EA L K+K EV KSE+K IE ML+VVTEER+KLRN  N   
Sbjct: 369 KQMEVALDAAEIGKQNAEAEAELAKDKAEVLKSEIKGIELMLAVVTEERNKLRNFAN--- 425

Query: 446 KPKNDGGGDERANLTLTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLN 505
             KND   D   N    +E ESSL KK++ +++LES LH Q+ +N+ Q +EIK L+EKL+
Sbjct: 426 -LKNDETLDASKNANSVQEPESSLMKKDDCVKDLESTLHEQRLVNNCQLEEIKLLNEKLH 484

Query: 506 NEERRIKSLERENDRLRSEISLLESKLGHGDFSSENTKVLRMVNTLAVDNEAKQTIEALQ 565
           +E RR+KSLERE+DRLRSEISLLE+KLGHGDFS+ NTKVLRMVNTL VDNEAKQTIEALQ
Sbjct: 485 SEARRVKSLERESDRLRSEISLLEAKLGHGDFSAANTKVLRMVNTLTVDNEAKQTIEALQ 544

Query: 566 TELQKTKEKLQAVEELKSQSGDTGKLVDSYISGKITQLKEQIATLEKREERYKTVFADRI 625
           TELQKTKEKL+A+EELKSQSG+ GKLVDSYIS K+ QLKEQIATLEKREERYKTVFADRI
Sbjct: 545 TELQKTKEKLKALEELKSQSGEAGKLVDSYISDKMLQLKEQIATLEKREERYKTVFADRI 604

Query: 626 SVFRRACCELFGYKIVMDEHQRANGIPVTHFTLQSIYAQGDDEKLEFEYESSNTNIMVND 685
           SVFRRACCELFGYKIVMDEHQR+NGIPVT FTLQSIYAQ DDEKLEFEYES NTNI+ N 
Sbjct: 605 SVFRRACCELFGYKIVMDEHQRSNGIPVTRFTLQSIYAQSDDEKLEFEYESGNTNILANH 664

Query: 686 YTSQPEISRQVDIFVRKMNSIPAFTANLTVESFNRRTLS 724
           YTSQPE+SRQV+IF+RKMNSIPAFTAN+TVESFNRRTLS
Sbjct: 665 YTSQPEVSRQVEIFIRKMNSIPAFTANITVESFNRRTLS 703

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522119|ref|XP_003529697.1| PREDICTED: spindle assembly checkpoint component mad1-like [Glycine max]

 Score =  957 bits (2475), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/698 (72%), Positives = 592/698 (84%), Gaps = 10/698 (1%)

Query: 27  GGSDRRLVIYEDPSPAGRESSHQPSDHLLCTYQCRQMVKSDFLDALTNVEKQVRDYQSKL 86
              D +LVIYEDP     ESS  PS+H+LCTYQCRQMVKSDF+DAL+  E Q R YQSK 
Sbjct: 14  ADGDGQLVIYEDPP----ESS--PSEHMLCTYQCRQMVKSDFIDALSKAENQARHYQSKF 67

Query: 87  EELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQLLKEVDDSRERLKKQIQLC 146
           E L  NF K E+ERKKF+DQFLYA+QELAAAKGRE  LQ+QLL EV  S+ERL+KQIQL 
Sbjct: 68  ETLEPNFHKLESERKKFQDQFLYAQQELAAAKGREQALQDQLLMEVTQSQERLRKQIQLN 127

Query: 147 SELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLSDSIEREKKRLNNEVTQLKRES 206
           ++L+ K +NE +LR+KAES AASAEEKA+  EGKL HLS+SIEREKKRL ++ +QLK +S
Sbjct: 128 TQLQVKLQNETDLRKKAESHAASAEEKATSFEGKLGHLSESIEREKKRLRDDHSQLKSDS 187

Query: 207 KSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQE 266
           K SISRI A LE+MECRA NAE+E+E+LK Q+K LK+QL+ECL+QK EVEKKLS+  FQE
Sbjct: 188 KLSISRISAKLEQMECRANNAEREAELLKEQLKLLKDQLDECLHQKIEVEKKLSTLMFQE 247

Query: 267 FSTTDSNILVKHLQEEIRNYEAEVREARKLKASYENTELLKEKLLEEKSRRERVEQELAK 326
            ++T+SN+LVKHLQ+E+RNYE+ VREARKL++S+EN ELLKEKLLEEKS RER E EL+K
Sbjct: 248 VASTESNVLVKHLQQELRNYESVVREARKLRSSHENVELLKEKLLEEKSHRERAESELSK 307

Query: 327 LREVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLK 386
           L ++Q +M +LED++SSW+ +I DIPGVSC ED+PVKFAALQKEVI S  K GE  A+LK
Sbjct: 308 LHDIQLNMKKLEDQISSWRVMITDIPGVSCFEDLPVKFAALQKEVIYSTQKEGEITARLK 367

Query: 387 QMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKK 446
           QMEVALDAA++GKQ+AE EAAL K+K EV KSE+KRIE ML+VVTEER+KLRNV N    
Sbjct: 368 QMEVALDAAEIGKQNAEAEAALAKDKAEVLKSEIKRIELMLAVVTEERNKLRNVAN---- 423

Query: 447 PKNDGGGDERANLTLTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNN 506
            KND   D   N    +E ESSL KK++ I++LES LH Q+ +N+RQ DE+K L+EKL+ 
Sbjct: 424 LKNDEALDASKNANPVQEPESSLMKKDDCIKDLESTLHEQRMVNNRQLDEMKLLNEKLHG 483

Query: 507 EERRIKSLERENDRLRSEISLLESKLGHGDFSSENTKVLRMVNTLAVDNEAKQTIEALQT 566
           E RR+KSLERE+DRLRSEISLLE+KLGHGDFS+ NTKVLRMVNTL VDNEAKQTIEALQT
Sbjct: 484 EARRVKSLERESDRLRSEISLLEAKLGHGDFSAANTKVLRMVNTLTVDNEAKQTIEALQT 543

Query: 567 ELQKTKEKLQAVEELKSQSGDTGKLVDSYISGKITQLKEQIATLEKREERYKTVFADRIS 626
           ELQKTKEKL+AVEELKSQSG+ GKLVDSYIS K+ QLKEQIATLEKREERYKTVFADRIS
Sbjct: 544 ELQKTKEKLKAVEELKSQSGEAGKLVDSYISDKMLQLKEQIATLEKREERYKTVFADRIS 603

Query: 627 VFRRACCELFGYKIVMDEHQRANGIPVTHFTLQSIYAQGDDEKLEFEYESSNTNIMVNDY 686
           VFRRACCELFGYKIVMDEHQR+NGIPVT FTLQSIYAQ DDEKLEFEYES NTNI+ N Y
Sbjct: 604 VFRRACCELFGYKIVMDEHQRSNGIPVTRFTLQSIYAQSDDEKLEFEYESGNTNILANHY 663

Query: 687 TSQPEISRQVDIFVRKMNSIPAFTANLTVESFNRRTLS 724
           TSQPE+SRQV+IF+RKMNSIPAFTAN+TVESFNRRTLS
Sbjct: 664 TSQPEVSRQVEIFIRKMNSIPAFTANMTVESFNRRTLS 701

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240571|ref|NP_199799.1| mitotic spindle assembly checkpoint protein MAD1 [Arabidopsis thaliana] gi|8777419|dbj|BAA97009.1| mitotic checkpoint protein-like [Arabidopsis thaliana] gi|332008484|gb|AED95867.1| mitotic spindle assembly checkpoint protein MAD1 [Arabidopsis thaliana]

 Score =  949 bits (2454), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/727 (65%), Positives = 601/727 (82%), Gaps = 6/727 (0%)

Query: 1   MILRTPPPKRPRDAAGEPIIECPPTAGGSDRRLVIYED---PSPAGRESSHQPS-DHLLC 56
           MILRTP PKR R  AGE     P  A GS  +L+IYED   P+PA  ++SH  S D  LC
Sbjct: 1   MILRTPQPKRLRSDAGESPF--PTGATGSGNQLIIYEDSPLPAPAPLQTSHDHSADQHLC 58

Query: 57  TYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAA 116
           TYQCRQMVK+D LDAL+  EKQV + ++KL+ LN NF++A+AERK FRD+FLY+EQELAA
Sbjct: 59  TYQCRQMVKADVLDALSTAEKQVEESKTKLQTLNANFTEADAERKHFRDKFLYSEQELAA 118

Query: 117 AKGREGVLQEQLLKEVDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASL 176
           AK RE +LQEQLL E+++S+ER  K++Q C ELE K +NE+NLR+KAES+AA+AEEKA L
Sbjct: 119 AKAREKMLQEQLLMEINNSQERYTKELQSCHELEVKLQNEMNLRKKAESSAATAEEKAKL 178

Query: 177 LEGKLTHLSDSIEREKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKN 236
           LE KLT LS S++REKKRLNN++ QL +E+K S++RIGADLE+M+CRAQNAE ES +L++
Sbjct: 179 LEDKLTQLSGSVDREKKRLNNDIAQLGKEAKLSVARIGADLERMQCRAQNAETESNLLRS 238

Query: 237 QMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREARKL 296
           Q++ LK   +ECL +K+EV+KKLSS T +  S++D+++LVKHLQEE++ YEAEVREARKL
Sbjct: 239 QLEHLKLIFDECLQEKTEVDKKLSSFTSEAASSSDNSVLVKHLQEELKRYEAEVREARKL 298

Query: 297 KASYENTELLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGVSC 356
           K+ + + ELL   LLEE+SRRER E EL+K  ++Q SM++LE+ELSSWK L+ DIPGVSC
Sbjct: 299 KSRHLDAELLNVNLLEEQSRRERAESELSKFHDLQLSMEKLENELSSWKSLLNDIPGVSC 358

Query: 357 SEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEEVS 416
            +DI ++F+ LQ EV+ S MK+GEA+ ++KQ+E  L+A QLG+Q+A +EAAL KEK E  
Sbjct: 359 PDDIVMRFSVLQNEVVQSTMKIGEASTRIKQLEETLEAIQLGRQNAVSEAALAKEKSEAL 418

Query: 417 KSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEFI 476
           K++VKRIE ML++VTEE+++L+ VVNE +K  ++G     A+  L +  ESSLAKKE +I
Sbjct: 419 KTDVKRIEVMLTLVTEEKEQLKAVVNELRKSNSEGSVSGAADGALIQGFESSLAKKENYI 478

Query: 477 EELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLGHGD 536
           ++LE +L+  +++N+RQR EI+ L+EKL +E RR KSLER++DRLRSEISLLESKLGHGD
Sbjct: 479 KDLEQDLNQLKDVNNRQRTEIELLNEKLVDEARRNKSLERDSDRLRSEISLLESKLGHGD 538

Query: 537 FSSENTKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQAVEELKSQSGDTGKLVDSYI 596
           +S+ NT+VLRMVNTL V+NEAKQTIEALQ ELQKTKE+LQAVEELKSQSGD GKLVDS+I
Sbjct: 539 YSAANTRVLRMVNTLGVENEAKQTIEALQAELQKTKERLQAVEELKSQSGDAGKLVDSHI 598

Query: 597 SGKITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKIVMDEHQRANGIPVTHF 656
           +GKI QLKEQ ATLEKREERYKTVFADRISVFRRACCELFGYKIVMDEHQR NGIPVT F
Sbjct: 599 TGKIAQLKEQNATLEKREERYKTVFADRISVFRRACCELFGYKIVMDEHQRPNGIPVTRF 658

Query: 657 TLQSIYAQGDDEKLEFEYESSNTNIMVNDYTSQPEISRQVDIFVRKMNSIPAFTANLTVE 716
           TLQSIYAQ DDEKLEFEYES NT+I+ N+Y SQ +I++Q++IF+RK NSIPAFTANLT+E
Sbjct: 659 TLQSIYAQSDDEKLEFEYESGNTSILNNEYASQGDIAKQIEIFIRKFNSIPAFTANLTME 718

Query: 717 SFNRRTL 723
           SFNRRTL
Sbjct: 719 SFNRRTL 725

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792269|ref|XP_002864019.1| mitotic checkpoint family protein [Arabidopsis lyrata subsp. lyrata] gi|297309854|gb|EFH40278.1| mitotic checkpoint family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  946 bits (2446), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/727 (65%), Positives = 606/727 (83%), Gaps = 6/727 (0%)

Query: 1   MILRTPPPKRPRDAAGEPIIECPPTAGGSDRRLVIYED---PSPAGRESSHQPS-DHLLC 56
           MILRTPPPKR R  AG+  +  P +A GS  +L+IYED   P+ A  ++SH  S D  LC
Sbjct: 1   MILRTPPPKRLRSDAGDSPV--PTSATGSGNQLIIYEDSPLPASAPLQTSHDHSADQHLC 58

Query: 57  TYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAA 116
           TYQCRQMVK+D LDAL+  EKQV +YQ+KL+ LN NF++A+AERK FRD+FLY+EQELAA
Sbjct: 59  TYQCRQMVKADVLDALSTAEKQVEEYQTKLQTLNANFTEADAERKHFRDKFLYSEQELAA 118

Query: 117 AKGREGVLQEQLLKEVDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASL 176
           AKGRE +LQEQLL E+++++ER  K++Q C ELE K +NE+NLR+KAES+AA+AEEKA L
Sbjct: 119 AKGREKMLQEQLLMEINNAQERYTKELQSCHELEVKLQNEMNLRKKAESSAATAEEKAKL 178

Query: 177 LEGKLTHLSDSIEREKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKN 236
           LE KLTHLS S++REKKRLNN++ QL +E+K S+SRIGADLE+++CRA NAE ES +L++
Sbjct: 179 LEDKLTHLSGSVDREKKRLNNDIAQLGKEAKLSVSRIGADLERVQCRAHNAETESNLLRS 238

Query: 237 QMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREARKL 296
           Q++ LK + +ECL +K+EV+KKLSS + +  S++D+++LVKHLQEE++ YEAEVREARKL
Sbjct: 239 QLEHLKLKFDECLQEKTEVDKKLSSFSSEAASSSDNSVLVKHLQEELKRYEAEVREARKL 298

Query: 297 KASYENTELLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGVSC 356
           K+ + + ELL  KLLEE+SRRER E EL+K  ++Q S+++LE+ELSSWK L+ DIPGVSC
Sbjct: 299 KSRHLDAELLNVKLLEEQSRRERAESELSKFHDLQLSLEKLENELSSWKPLLNDIPGVSC 358

Query: 357 SEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEEVS 416
            +DI +KF+ALQ EV+ S MK+GEA+ ++K +E  L+A QLG+Q+A TEAAL KEK E  
Sbjct: 359 PDDIVMKFSALQNEVVQSTMKIGEASTRIKHLEETLEATQLGRQNAVTEAALAKEKSEAL 418

Query: 417 KSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEFI 476
           K++VKR E ML++VTEE+++L+ +VNE +K  ++G     A+ TL +  ESSLAKKE++I
Sbjct: 419 KTDVKRTEVMLTLVTEEKEQLKALVNELRKSNSEGSVPGAADGTLIQGFESSLAKKEKYI 478

Query: 477 EELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLGHGD 536
            +LE +L   +++N+RQR EI+ L+EKL +E RR KSLER++DRLRSEISLLESKLGHGD
Sbjct: 479 NDLEQDLSELKDVNNRQRTEIELLNEKLVDEARRNKSLERDSDRLRSEISLLESKLGHGD 538

Query: 537 FSSENTKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQAVEELKSQSGDTGKLVDSYI 596
           FS+ NT+VLRMVNTL V++EAKQTIEALQ ELQK KE+LQAVEELKSQ+GD GKLVDS+I
Sbjct: 539 FSAANTRVLRMVNTLGVEDEAKQTIEALQAELQKAKERLQAVEELKSQTGDAGKLVDSHI 598

Query: 597 SGKITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKIVMDEHQRANGIPVTHF 656
           +GKI QLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKIVMDEHQR NGIPVT F
Sbjct: 599 TGKIAQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKIVMDEHQRPNGIPVTRF 658

Query: 657 TLQSIYAQGDDEKLEFEYESSNTNIMVNDYTSQPEISRQVDIFVRKMNSIPAFTANLTVE 716
           TLQSIYAQ DDEKLEFEYES NT+I+ N+Y SQ +I++Q++IF+RK NSIPAFTANLT+E
Sbjct: 659 TLQSIYAQSDDEKLEFEYESGNTSILNNEYASQGDIAKQIEIFIRKFNSIPAFTANLTME 718

Query: 717 SFNRRTL 723
           SFNRRTL
Sbjct: 719 SFNRRTL 725

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125572840|gb|EAZ14355.1| hypothetical protein OsJ_04275 [Oryza sativa Japonica Group]

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/733 (54%), Positives = 539/733 (73%), Gaps = 20/733 (2%)

Query: 1   MILRTPPPKRPR-----DAAGEPIIECPPTAGGSDRRLVIYEDPS---PAGRESSHQPSD 52
           MILRTPP ++ R     DAA        P    SDRRLV+Y+ P+   PAG     +P D
Sbjct: 1   MILRTPPQRKRRADSDVDAAAATATTRSPV---SDRRLVLYDRPTALVPAG--VPGEPMD 55

Query: 53  HLLCTYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQ 112
            ++CTY CRQMVKS+F+ AL   EKQV++Y++ L+++ E  SK+E ER   +D+  Y EQ
Sbjct: 56  DMVCTYHCRQMVKSEFMVALDTAEKQVQEYRATLDDMEERLSKSEDERATCQDKLNYVEQ 115

Query: 113 ELAAAKGREGVLQEQLLKEVDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEE 172
           ELAA KGRE  +QE+LLKEV D +ER   QI+   ELE + + E++ R  AES++ASA+E
Sbjct: 116 ELAATKGRESAMQERLLKEVGDFQERYCDQIKKIGELETQLKKEIDSRIAAESSSASAKE 175

Query: 173 KASLLEGKLTHLSDSIEREKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESE 232
               LEG L  LS++ EREKK L  +++ L+ ++K SIS++ A+LE+M  RA N+E E++
Sbjct: 176 SVKELEGNLQRLSENSEREKKALKKKLSYLQDDTKLSISKLNAELERMRLRALNSEDEAK 235

Query: 233 MLKNQMKDLKEQLNECLNQKSEVEKKL--SSSTFQEFSTTDSNILVKHLQEEIRNYEAEV 290
           +L  Q++DLK+QL+E + + +E+E +L   SS   E + +D   L+K LQEE+RNYE EV
Sbjct: 236 LLNEQLEDLKKQLDESVRENNEMEHRLLNCSSLSYERTPSDDQKLIKLLQEELRNYEKEV 295

Query: 291 REARKLKASYENTELLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRD 350
            EAR+LK+S+ N ELLKEK+LEE+  RER E EL+KL+E++    +LE EL+S   L+ +
Sbjct: 296 DEARRLKSSHTNVELLKEKILEEQGCRERAEMELSKLQEIEAKAQKLELELASCTALLSN 355

Query: 351 IPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVK 410
           IP VS   DIP K A LQK+ + ++ K+GE  +QLK+++VAL+ A L KQ AE EA L K
Sbjct: 356 IPDVSSFGDIPQKIADLQKQALTNLNKVGEVTSQLKELKVALEFADLSKQRAEGEATLAK 415

Query: 411 EKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLA 470
           E+ E +  E+KR+E +L+ ++EERD+LR    +    K+  G D  + +T+ + +ES L+
Sbjct: 416 ERAESATREIKRLELLLAAISEERDRLRK---DHAVSKSRDGDDASSKVTI-QNMESDLS 471

Query: 471 KKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLES 530
           + E+ + ELES +  Q+E+ S+Q  E+  ++EKL+ E R+ KSLER+ D+LRS+++LLES
Sbjct: 472 RMEKVVTELESTIRDQRELISQQHTELNLMNEKLSIESRKAKSLERDGDQLRSQVALLES 531

Query: 531 KLGHGDFSSENTKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQAVEELKSQSGDTGK 590
           KLGHGD+S+ +TKVLRMVNTLAVDNEAKQTIEALQ EL+KTKE+LQAVEELK Q+ D G 
Sbjct: 532 KLGHGDYSASSTKVLRMVNTLAVDNEAKQTIEALQAELKKTKERLQAVEELKGQA-DVGT 590

Query: 591 LVDSYISGKITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKIVMDEHQRANG 650
           +VD  I+ K+ QLK QIATLEKREERYK VFA+RISVFR+ACC LFGYKIVM++ Q++NG
Sbjct: 591 VVDVNIAEKLAQLKNQIATLEKREERYKAVFAERISVFRKACCSLFGYKIVMNDQQQSNG 650

Query: 651 IPVTHFTLQSIYAQGDDEKLEFEYESSNTNIMVNDYTSQPEISRQVDIFVRKMNSIPAFT 710
           IPVT F L S+YAQ DDEKLEF+YES +TNI+VNDYTSQ EI++QVDIF+RKMNSIPAFT
Sbjct: 651 IPVTRFILHSVYAQSDDEKLEFDYESGSTNIVVNDYTSQHEIAQQVDIFIRKMNSIPAFT 710

Query: 711 ANLTVESFNRRTL 723
           ANLT+ESFN+R++
Sbjct: 711 ANLTMESFNKRSI 723

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115441387|ref|NP_001044973.1| Os01g0877300 [Oryza sativa Japonica Group] gi|56784734|dbj|BAD81883.1| putative mitotic checkpoint protein [Oryza sativa Japonica Group] gi|113534504|dbj|BAF06887.1| Os01g0877300 [Oryza sativa Japonica Group] gi|215706925|dbj|BAG93385.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/733 (54%), Positives = 536/733 (73%), Gaps = 24/733 (3%)

Query: 1   MILRTPPPKRPR-----DAAGEPIIECPPTAGGSDRRLVIYEDPS---PAGRESSHQPSD 52
           MILRTPP ++ R     DAA        P    SDRRLV+Y+ P+   PAG     +P D
Sbjct: 1   MILRTPPQRKRRADSDVDAAAATATTRSPV---SDRRLVLYDRPTALVPAG--VPGEPMD 55

Query: 53  HLLCTYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQ 112
            ++CTY CRQMVKS+F+ AL   EKQV++Y++ L+++ E  SK+E ER   +D+  Y EQ
Sbjct: 56  DMVCTYHCRQMVKSEFMVALDTAEKQVQEYRATLDDMEERLSKSEDERATCQDKLNYVEQ 115

Query: 113 ELAAAKGREGVLQEQLLKEVDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEE 172
           ELAA KGRE  +QE+LLKEV D +ER   QI+   ELE + + E++ R  AES++ASA+E
Sbjct: 116 ELAATKGRESAMQERLLKEVGDFQERYCDQIKKIGELETQLKKEIDSRIAAESSSASAKE 175

Query: 173 KASLLEGKLTHLSDSIEREKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESE 232
               LEG L  LS++ EREKK L  +++ L+ ++K SIS++ A+LE+M  RA N+E E++
Sbjct: 176 SVKELEGNLQRLSENSEREKKALKKKLSYLQDDTKLSISKLNAELERMRLRALNSEDEAK 235

Query: 233 MLKNQMKDLKEQLNECLNQKSEVEKKL--SSSTFQEFSTTDSNILVKHLQEEIRNYEAEV 290
           +L  Q++DLK+QL+E + + +E+E +L   SS   E + +D   L+K LQEE+RNYE EV
Sbjct: 236 LLNEQLEDLKKQLDESVRENNEMEHRLLNCSSLSYERTPSDDQKLIKLLQEELRNYEKEV 295

Query: 291 REARKLKASYENTELLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRD 350
            EAR+LK+S+ N ELLKEK+LEE+  RER E EL+KL+E++    +LE EL+S   L+ +
Sbjct: 296 DEARRLKSSHTNVELLKEKILEEQGCRERAEMELSKLQEIEAKAQKLELELASCTALLSN 355

Query: 351 IPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVK 410
           IP VS   DIP K A LQK+ + ++ K+GE  +QLK+++VAL+ A L KQ AE EA L K
Sbjct: 356 IPDVSSFGDIPQKIADLQKQALTNLNKVGEVTSQLKELKVALEFADLSKQRAEGEATLAK 415

Query: 411 EKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLA 470
           E+ E +  E+KR+E +L+ ++EERD+LR    +    K+  G D       +K +ES L+
Sbjct: 416 ERAESATREIKRLELLLAAISEERDRLRK---DHAVSKSRDGDDAS-----SKNMESDLS 467

Query: 471 KKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLES 530
           + E+ + ELES +  Q+E+ S+Q  E+  ++EKL+ E R+ KSLER+ D+LRS+++LLES
Sbjct: 468 RMEKVVTELESTIRDQRELISQQHTELNLMNEKLSIESRKAKSLERDGDQLRSQVALLES 527

Query: 531 KLGHGDFSSENTKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQAVEELKSQSGDTGK 590
           KLGHGD+S+ +TKVLRMVNTLAVDNEAKQTIEALQ EL+KTKE+LQAVEELK Q+ D G 
Sbjct: 528 KLGHGDYSASSTKVLRMVNTLAVDNEAKQTIEALQAELKKTKERLQAVEELKGQA-DVGT 586

Query: 591 LVDSYISGKITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKIVMDEHQRANG 650
           +VD  I+ K+ QLK QIATLEKREERYK VFA+RISVFR+ACC LFGYKIVM++ Q++NG
Sbjct: 587 VVDVNIAEKLAQLKNQIATLEKREERYKAVFAERISVFRKACCSLFGYKIVMNDQQQSNG 646

Query: 651 IPVTHFTLQSIYAQGDDEKLEFEYESSNTNIMVNDYTSQPEISRQVDIFVRKMNSIPAFT 710
           IPVT F L S+YAQ DDEKLEF+YES +TNI+VNDYTSQ EI++QVDIF+RKMNSIPAFT
Sbjct: 647 IPVTRFILHSVYAQSDDEKLEFDYESGSTNIVVNDYTSQHEIAQQVDIFIRKMNSIPAFT 706

Query: 711 ANLTVESFNRRTL 723
           ANLT+ESFN+R++
Sbjct: 707 ANLTMESFNKRSI 719

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	724
TAIR|locus:2158804	726	MAD1 "mitotic arrest deficient	0.995	0.993	0.599	1.1e-224
ZFIN|ZDB-GENE-040426-1081	717	mad1l1 "MAD1 mitotic arrest de	0.320	0.323	0.282	3.3e-24
DICTYBASE|DDB_G0287755	819	mad1 "mitotic spindle assembly	0.890	0.787	0.200	1.2e-20
UNIPROTKB|Q9Y6D9	718	MAD1L1 "Mitotic spindle assemb	0.327	0.330	0.282	1.6e-20
UNIPROTKB|B3KR41	626	MAD1L1 "cDNA FLJ33640 fis, clo	0.327	0.378	0.282	6.6e-20
UNIPROTKB|C9JP81	266	MAD1L1 "Mitotic spindle assemb	0.324	0.883	0.284	2.8e-19
UNIPROTKB|Q80YF0	717	MAD1L1 "Mitotic spindle assemb	0.321	0.324	0.275	1e-17
RGD|1596881	717	Mad1l1 "MAD1 mitotic arrest de	0.321	0.324	0.267	1.9e-17
FB|FBgn0026326	730	Mad1 [Drosophila melanogaster	0.390	0.387	0.232	5.5e-17
MGI|MGI:1341857	717	Mad1l1 "MAD1 mitotic arrest de	0.321	0.324	0.267	7.3e-17

TAIR|locus:2158804 MAD1 "mitotic arrest deficient 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 2169 (768.6 bits), Expect = 1.1e-224, P = 1.1e-224
 Identities = 436/727 (59%), Positives = 553/727 (76%)

Query:     1 MILRTPPPKRPRDAAGEPIIECPPTAGGSDRRLVIYED---PSPAGRESSHQPS-DHLLC 56
             MILRTP PKR R  AGE     P  A GS  +L+IYED   P+PA  ++SH  S D  LC
Sbjct:     1 MILRTPQPKRLRSDAGESPF--PTGATGSGNQLIIYEDSPLPAPAPLQTSHDHSADQHLC 58

Query:    57 TYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAA 116
             TYQCRQMVK+D LDAL+  EKQV + ++KL+ LN NF++A+AERK FRD+FLY+EQELAA
Sbjct:    59 TYQCRQMVKADVLDALSTAEKQVEESKTKLQTLNANFTEADAERKHFRDKFLYSEQELAA 118

Query:   117 AKGREGVLQEQLLKEVDDSRERLKKQIQLCSELEAKHRNELNLRRXXXXXXXXXXXXXXL 176
             AK RE +LQEQLL E+++S+ER  K++Q C ELE K +NE+NLR+              L
Sbjct:   119 AKAREKMLQEQLLMEINNSQERYTKELQSCHELEVKLQNEMNLRKKAESSAATAEEKAKL 178

Query:   177 LEGKLTHLSDSIEREKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKN 236
             LE KLT LS S++REKKRLNN++ QL +E+K S++RIGADLE+M+CRAQNAE ES +L++
Sbjct:   179 LEDKLTQLSGSVDREKKRLNNDIAQLGKEAKLSVARIGADLERMQCRAQNAETESNLLRS 238

Query:   237 QMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREARKL 296
             Q++ LK   +ECL +K+EV+KKLSS T +  S++D+++LVKHLQEE++ YEAEVREARKL
Sbjct:   239 QLEHLKLIFDECLQEKTEVDKKLSSFTSEAASSSDNSVLVKHLQEELKRYEAEVREARKL 298

Query:   297 KASYENTXXXXXXXXXXXSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGVSC 356
             K+ + +            SRRER E EL+K  ++Q SM++LE+ELSSWK L+ DIPGVSC
Sbjct:   299 KSRHLDAELLNVNLLEEQSRRERAESELSKFHDLQLSMEKLENELSSWKSLLNDIPGVSC 358

Query:   357 SEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSXXXXXXXXXXXXXXX 416
              +DI ++F+ LQ EV+ S MK+GEA+ ++KQ+E  L+A QLG+Q+               
Sbjct:   359 PDDIVMRFSVLQNEVVQSTMKIGEASTRIKQLEETLEAIQLGRQNAVSEAALAKEKSEAL 418

Query:   417 XXXXXXXXXMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTXXXXXXXXXXXXFI 476
                      ML++VTEE+++L+ VVNE +K  ++G     A+  L             +I
Sbjct:   419 KTDVKRIEVMLTLVTEEKEQLKAVVNELRKSNSEGSVSGAADGALIQGFESSLAKKENYI 478

Query:   477 EELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLGHGD 536
             ++LE +L+  +++N+RQR EI+ L+EKL +E RR KSLER++DRLRSEISLLESKLGHGD
Sbjct:   479 KDLEQDLNQLKDVNNRQRTEIELLNEKLVDEARRNKSLERDSDRLRSEISLLESKLGHGD 538

Query:   537 FSSENTKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQAVEELKSQSGDTGKLVDSYI 596
             +S+ NT+VLRMVNTL V+NEAKQTIEALQ ELQKTKE+LQAVEELKSQSGD GKLVDS+I
Sbjct:   539 YSAANTRVLRMVNTLGVENEAKQTIEALQAELQKTKERLQAVEELKSQSGDAGKLVDSHI 598

Query:   597 SGKITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKIVMDEHQRANGIPVTHF 656
             +GKI QLKEQ ATLEKREERYKTVFADRISVFRRACCELFGYKIVMDEHQR NGIPVT F
Sbjct:   599 TGKIAQLKEQNATLEKREERYKTVFADRISVFRRACCELFGYKIVMDEHQRPNGIPVTRF 658

Query:   657 TLQSIYAQGDDEKLEFEYESSNTNIMVNDYTSQPEISRQVDIFVRKMNSIPAFTANLTVE 716
             TLQSIYAQ DDEKLEFEYES NT+I+ N+Y SQ +I++Q++IF+RK NSIPAFTANLT+E
Sbjct:   659 TLQSIYAQSDDEKLEFEYESGNTSILNNEYASQGDIAKQIEIFIRKFNSIPAFTANLTME 718

Query:   717 SFNRRTL 723
             SFNRRTL
Sbjct:   719 SFNRRTL 725

GO:0005634 "nucleus" evidence=ISM

GO:0007093 "mitotic cell cycle checkpoint" evidence=ISS

GO:0005635 "nuclear envelope" evidence=IDA

GO:0009630 "gravitropism" evidence=RCA

ZFIN|ZDB-GENE-040426-1081 mad1l1 "MAD1 mitotic arrest deficient-like 1" [Danio rerio (taxid:7955)]

 Score = 232 (86.7 bits), Expect = 3.3e-24, Sum P(2) = 3.3e-24
 Identities = 73/258 (28%), Positives = 135/258 (52%)

Query:   478 ELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLG-H-- 534
             ELE+ L  QQ  N+ +   + +  E++++  ++I+ LE E  RL  + ++LE +L  H  
Sbjct:   475 ELEA-LKEQQVSNAERSSSVTA--EEISSLRQKIEELEAERQRLEEQNNILEMRLERHNL 531

Query:   535 -GDFSSENTKV--LRMVNTLAVDNEAKQTIEALQTELQKTKEKLQAVEELKSQSGDTGKL 591
              GD+    TKV  L+M  T     +    +E L+ E Q+ +++L+ +E     + D   L
Sbjct:   532 QGDYDPVKTKVVHLQMNPTSMAKQQRADEVEQLRVECQRLRDRLRKIEVAGGMTTDDTTL 591

Query:   592 VDSYISGKITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKI-VMDEHQRANG 650
             +    S +I  L++Q+ + E + +R K VF  +I  FR AC  L GY+I +  E+Q    
Sbjct:   592 IIPP-SQEILDLRKQMESAELKNQRLKEVFQKKIQEFRTACYVLTGYQIDITVENQ---- 646

Query:   651 IPVTHFTLQSIYAQGDDEKLEFEYE----SSNTNIMVNDYTSQPEISRQVDIFVRKMNSI 706
                  + L S+YA+  ++ L F+      S +  ++  D++    ++  VD+ +    SI
Sbjct:   647 -----YRLTSVYAEHMEDSLLFKSTGPVGSGSMQLLETDFSRT--LTGLVDLHLFHQKSI 699

Query:   707 PAFTANLTVESFNRRTLS 724
             P F + +T+E F+R+T++
Sbjct:   700 PVFLSAVTIELFSRQTVA 717

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0287755 mad1 "mitotic spindle assembly checkpoint protein 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 277 (102.6 bits), Expect = 1.2e-20, P = 1.2e-20
 Identities = 141/703 (20%), Positives = 285/703 (40%)

Query:    59 QCRQMVKSD--FLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAA 116
             Q  + +K D    D L     ++   + +L EL   F+  E   K    +   A  +L  
Sbjct:   133 QLERQLKQDKRIGDNLLQQSLELSSTEKELSELKVKFNDIERTNKFLLTKTAEARLDL-- 190

Query:   117 AKGREGVLQEQLLKEVDDSRERLKKQIQLCSELEAKHRNELN-LRRXXXXXXXXXXXXXX 175
              +  E + Q ++  + +   E L K+I+  S  E +  ++L  +                
Sbjct:   191 -ENSEKINQTKIANK-NLEIEGLSKKIKFLSNSEKELEDKLKEMDNKYLELERNTQLKIR 248

Query:   176 LLEGKLTHL-SDSIEREKKRLN-NEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEM 233
              +E + T+  ++ +E + K  N N++T +++   S I  + +  +K+E +  + ++  + 
Sbjct:   249 AIEKEKTNCRTEIVELKHKNSNQNDLTSIQKLKDSEIQHLKSINKKLEEQINHQKQTLDS 308

Query:   234 LKNQMKDLKEQLNECLNQ-KSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIR---NYEAE 289
                Q+ +  +QL+   N   S      SSS+    S +  N  ++ L + ++   NY  +
Sbjct:   309 TLKQLSEKDKQLDTFKNIITSPPPPSSSSSSLSSASASLKNSEIETLNQSLKSEINYFKK 368

Query:   290 VREARK-----LKASYENTXXXXXXXXXXXSRRE---RVEQELAKLREVQQSMDQLEDEL 341
             + + +K     L   +E             + +E   R+E  + K   +Q   +QL +E 
Sbjct:   369 INKEQKDEINRLNKIFEGVGNLEMIKQQNENMKEKIKRLEPLIEKYNRLQVEHNQLINEK 428

Query:   342 SSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQS 401
             +  +     I     ++ +  K   L+ +    + K+GE  A  K ME       +  Q 
Sbjct:   429 NQMELTFGSIDKQQSTQQLQQKIIQLENDNQTLIGKIGEITANWKLMESRNQDYSIRIQQ 488

Query:   402 XXXXXXXXXXXXXXXXXXXXXXXXMLSVVTEERDKLRNVVNEF---KKPKN--DGGGDER 456
                                     +  ++  ERD ++N+++ +   ++P+   D   +  
Sbjct:   489 EKDSLNEKLTKINELTEKIKRLEKLNYLLNRERDNIKNILDTYDDNQQPQQLQDDDNNNN 548

Query:   457 ANLTLTXXXXXXXXXXXXFIEELESNLHAQQEINSRQRDEI--KSLSEKLN------NEE 508
              N                 I ELE +L  +  +      ++   + S  +N      N +
Sbjct:   549 NNNNNNNNESGDTKRRIEIINELERSLKEKNILIQEYEYKLDCNNNSNNVNGDFSSINYK 608

Query:   509 RRIKSLERENDRLRSEISLLESKLGHGDFSSENTKVLRMVNTLAVDNEAKQTIEALQTEL 568
                K L +E ++L  E +LLE++LG G+F    TKVL   N     N +   +   Q + 
Sbjct:   609 EECKRLNKEIEKLLQENALLEARLGKGEFDPLKTKVLHFSN-----NPSSLILNQQQQQE 663

Query:   569 QKTKEKLQAVEELKSQSGDTGKL-VDSYISGKITQLKEQIATLEKREERYKTVFADRISV 627
             +     +     + +   +   + +D  +  +  +L  QI   EK+ +R K +F  +I+ 
Sbjct:   664 ESNNNNIN--NNINNDKNNNNSIQIDKKLIEENHRLLIQINDGEKKMDRLKQIFKQKINE 721

Query:   628 FRRACCELFGYKIVMDEHQRANGIPVTHFTLQSIYAQGDDEKLEFEY----ESSNTNIMV 683
             FR A   L G+KI +D + R        + LQS+YA+ + + L F+     + SN    +
Sbjct:   722 FREAVYALLGFKIDVDTNNR--------YKLQSMYAERESDFLMFQQSPPTQQSNNKGRI 773

Query:   684 NDYTSQPEISRQVD----IFVRKMNSIPAFTANLTVESFNRRT 722
                  + E +R +D     ++    SIP+F + +T+E F+++T
Sbjct:   774 QMELLETEFTRNLDKEIKAYLFACKSIPSFLSQVTIELFSKQT 816

GO:0030496 "midbody" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:0000776 "kinetochore" evidence=IDA

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q9Y6D9 MAD1L1 "Mitotic spindle assembly checkpoint protein MAD1" [Homo sapiens (taxid:9606)]

 Score = 242 (90.2 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
 Identities = 72/255 (28%), Positives = 129/255 (50%)

Query:   479 LESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLGH---- 534
             LE  L   +  +S          E+ +    +++ LE E  RL  E  +LE++L      
Sbjct:   473 LEMELKMLKSQSSSAEQSFLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQ 532

Query:   535 GDFSSENTKVLRM-VNTLAVDNEA-KQTIEALQTELQKTKEKLQAVEELKSQSGDTGKLV 592
             GD+    TKVL M +N  +V  +  ++    LQ E ++ +  L+A+E   +   D     
Sbjct:   533 GDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAMERGGTVPADLEAAA 592

Query:   593 DSYISGK-ITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKI-VMDEHQRANG 650
              S  S K + +LK+Q+ + E + +R K VF  +I  FR+AC  L GY+I +  E+Q    
Sbjct:   593 ASLPSSKEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACYTLTGYQIDITTENQ---- 648

Query:   651 IPVTHFTLQSIYAQGDDEKLEFEYES-SNTNIMVNDYTSQPEISRQVDIFVRKMNSIPAF 709
                  + L S+YA+   + L F+  S S + + + +      +   +++ +R+ +SIPAF
Sbjct:   649 -----YRLTSLYAEHPGDCLIFKATSPSGSKMQLLETEFSHTVGELIEVHLRRQDSIPAF 703

Query:   710 TANLTVESFNRRTLS 724
              ++LT+E F+R+T++
Sbjct:   704 LSSLTLELFSRQTVA 718

GO:0051301 "cell division" evidence=IEA

GO:0000777 "condensed chromosome kinetochore" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0007093 "mitotic cell cycle checkpoint" evidence=NAS

GO:0005813 "centrosome" evidence=NAS

GO:0005819 "spindle" evidence=NAS

GO:0000089 "mitotic metaphase" evidence=NAS

GO:0000090 "mitotic anaphase" evidence=NAS

GO:0000776 "kinetochore" evidence=IDA

GO:0005643 "nuclear pore" evidence=IDA

GO:0000093 "mitotic telophase" evidence=NAS

GO:0090235 "regulation of metaphase plate congression" evidence=IDA

GO:0072686 "mitotic spindle" evidence=IDA

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000087 "M phase of mitotic cell cycle" evidence=TAS

GO:0000236 "mitotic prometaphase" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007094 "mitotic spindle assembly checkpoint" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0015629 "actin cytoskeleton" evidence=IDA

UNIPROTKB|B3KR41 MAD1L1 "cDNA FLJ33640 fis, clone BRAMY2023482, highly similar to Mitotic spindle assembly checkpoint protein MAD1" [Homo sapiens (taxid:9606)]

 Score = 242 (90.2 bits), Expect = 6.6e-20, Sum P(2) = 6.6e-20
 Identities = 72/255 (28%), Positives = 129/255 (50%)

Query:   479 LESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLGH---- 534
             LE  L   +  +S          E+ +    +++ LE E  RL  E  +LE++L      
Sbjct:   381 LEMELKMLKSQSSSAEQSFLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQ 440

Query:   535 GDFSSENTKVLRM-VNTLAVDNEA-KQTIEALQTELQKTKEKLQAVEELKSQSGDTGKLV 592
             GD+    TKVL M +N  +V  +  ++    LQ E ++ +  L+A+E   +   D     
Sbjct:   441 GDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAMERGGTVPADLEAAA 500

Query:   593 DSYISGK-ITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKI-VMDEHQRANG 650
              S  S K + +LK+Q+ + E + +R K VF  +I  FR+AC  L GY+I +  E+Q    
Sbjct:   501 ASLPSSKEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACYTLTGYQIDITTENQ---- 556

Query:   651 IPVTHFTLQSIYAQGDDEKLEFEYES-SNTNIMVNDYTSQPEISRQVDIFVRKMNSIPAF 709
                  + L S+YA+   + L F+  S S + + + +      +   +++ +R+ +SIPAF
Sbjct:   557 -----YRLTSLYAEHPGDCLIFKATSPSGSKMQLLETEFSHTVGELIEVHLRRQDSIPAF 611

Query:   710 TANLTVESFNRRTLS 724
              ++LT+E F+R+T++
Sbjct:   612 LSSLTLELFSRQTVA 626

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0015629 "actin cytoskeleton" evidence=IDA

UNIPROTKB|C9JP81 MAD1L1 "Mitotic spindle assembly checkpoint protein MAD1" [Homo sapiens (taxid:9606)]

 Score = 240 (89.5 bits), Expect = 2.8e-19, P = 2.8e-19
 Identities = 72/253 (28%), Positives = 127/253 (50%)

Query:   478 ELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLGH--- 534
             ELE  L   +  +S          E+ +    +++ LE E  RL  E  +LE++L     
Sbjct:    23 ELEMELKMLKSQSSSAEQSFLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRAL 82

Query:   535 -GDFSSENTKVLRM-VNTLAVDNEA-KQTIEALQTELQKTKEKLQAVEELKSQSGDTGKL 591
              GD+    TKVL M +N  +V  +  ++    LQ E ++ +  L+A+E   +   D    
Sbjct:    83 QGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAMERGGTVPADLEAA 142

Query:   592 VDSYISGK-ITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKI-VMDEHQRAN 649
               S  S K + +LK+Q+ + E + +R K VF  +I  FR+AC  L GY+I +  E+Q   
Sbjct:   143 AASLPSSKEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACYTLTGYQIDITTENQ--- 199

Query:   650 GIPVTHFTLQSIYAQGDDEKLEFEYES-SNTNIMVNDYTSQPEISRQVDIFVRKMNSIPA 708
                   + L S+YA+   + L F+  S S + + + +      +   +++ +R+ +SIPA
Sbjct:   200 ------YRLTSLYAEHPGDCLIFKATSPSGSKMQLLETEFSHTVGELIEVHLRRQDSIPA 253

Query:   709 FTANLTVESFNRR 721
             F ++LT+E F+R+
Sbjct:   254 FLSSLTLELFSRQ 266

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0015629 "actin cytoskeleton" evidence=IDA

UNIPROTKB|Q80YF0 MAD1L1 "Mitotic spindle assembly checkpoint protein MAD1" [Cricetulus griseus (taxid:10029)]

 Score = 209 (78.6 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
 Identities = 71/258 (27%), Positives = 127/258 (49%)

Query:   477 EELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLGH-- 534
             + LE  L   +   S          E+++    +++ LE E  RL  E   LE ++    
Sbjct:   471 DTLEMELKMLRAQTSSAETSFPFCKEEVDALRLKVEELEGERSRLEQEKQALEMQMERLT 530

Query:   535 --GDFSSENTKVLRM-VNTLAVDNEAKQTIEA-LQTELQKTKEKLQAVEELKSQSGDTGK 590
               GD++   TKVL M +N  ++  + +Q   A LQ E ++ +  + A+E       D  +
Sbjct:   531 LQGDYNQSRTKVLHMSLNPASMARKRQQEDHARLQGECERLRGLVHALERGGPIPADL-E 589

Query:   591 LVDSYISGK-ITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKI-VMDEHQRA 648
             +  S  S K + +L++Q+ + E + +R K VF  +I  FR+ C  L GY+I V  E+Q  
Sbjct:   590 VASSLPSSKEVAELRKQVESAELKNQRLKEVFQTKIQEFRKVCYTLTGYQIDVTTENQ-- 647

Query:   649 NGIPVTHFTLQSIYAQGDDEKLEFEY---ESSNTNIMVNDYT-SQPEISRQVDIFVRKMN 704
                    + L S YA+   + L F+      S   ++  +++ S PE+   +++ + + +
Sbjct:   648 -------YRLTSRYAEHQSDCLIFKATGPSGSKMQLLETEFSRSVPEL---IELHLLQQD 697

Query:   705 SIPAFTANLTVESFNRRT 722
             SIPAF + LT+E F+R+T
Sbjct:   698 SIPAFLSALTIELFSRQT 715

GO:0000776 "kinetochore" evidence=ISS

GO:0072686 "mitotic spindle" evidence=ISS

GO:0090235 "regulation of metaphase plate congression" evidence=ISS

GO:0005643 "nuclear pore" evidence=ISS

RGD|1596881 Mad1l1 "MAD1 mitotic arrest deficient-like 1 (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 200 (75.5 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
 Identities = 69/258 (26%), Positives = 125/258 (48%)

Query:   477 EELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLGH-- 534
             + LE  L   +   S          E+++    +++ LE E  RL  E   LE ++    
Sbjct:   471 DTLEMELKMLRAQTSSAEASFPFCKEEVDALRLKVEELEGERSRLEQEKQALEMQMERLT 530

Query:   535 --GDFSSENTKVLRM-VNTLAVDNEA-KQTIEALQTELQKTKEKLQAVEELKSQSGDTGK 590
               GD++   TKVL M +N  ++  +  ++  + LQ E ++ +  + A+E       D  +
Sbjct:   531 LQGDYNQSRTKVLHMSLNPASMARQRQREDHDRLQEECERLRGLVHALERGGPIPADL-E 589

Query:   591 LVDSYISGK-ITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKI-VMDEHQRA 648
                S  S K + +L++Q+ + E + +R K VF  +I  FR+ C  L GY+I V  E Q  
Sbjct:   590 AASSLPSSKEVAELRKQVESAELKNQRLKEVFQTKIQEFRKVCYTLTGYQIDVTTESQ-- 647

Query:   649 NGIPVTHFTLQSIYAQGDDEKLEFEY---ESSNTNIMVNDYT-SQPEISRQVDIFVRKMN 704
                    + L S YA+   + L F+      S   ++  +++ S PE+   +++ + + +
Sbjct:   648 -------YRLTSRYAEHQTDCLIFKATGPSGSKMQLLETEFSRSVPEL---IELHLLQQD 697

Query:   705 SIPAFTANLTVESFNRRT 722
             SIPAF + LT+E F+R+T
Sbjct:   698 SIPAFLSALTIELFSRQT 715

GO:0000776 "kinetochore" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005643 "nuclear pore" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA;ISO

GO:0072686 "mitotic spindle" evidence=ISO

GO:0090235 "regulation of metaphase plate congression" evidence=ISO

FB|FBgn0026326 Mad1 [Drosophila melanogaster (taxid:7227)]

 Score = 196 (74.1 bits), Expect = 5.5e-17, Sum P(2) = 5.5e-17
 Identities = 73/314 (23%), Positives = 145/314 (46%)

Query:   427 LSVVTEERDKLRNVVNEFKKP---KNDGGGDERANLTLTXXXXXXXXXXXXFIEELESNL 483
             L  V++ERD  + +V  F K     N    D   ++ +             + +++ + L
Sbjct:   430 LITVSKERDFYKQLVENFDKDTTLSNASVADMTQDMQVRVRMEVLERTVTGY-KDMCATL 488

Query:   484 HAQQEINSRQRDEI--KSLSEKLNNEERRIKSLERENDRLRSEISLLESKLGH----GDF 537
               ++EI S ++ E+  +   E  ++ ++ + +L  ENDRLR     LE ++ H    GDF
Sbjct:   489 --EREIQSLRQQELVNEPAGEGYDSVKKELDTLRMENDRLRRRKEELEMEMMHRCLRGDF 546

Query:   538 SSENTKVLRMVNTLAVD--NEAKQTIEALQTELQKTKEKLQAVEELKSQS-GDTGKLVDS 594
             + ++ KV+      A +     K  +E LQ E+++ K + + +E+   Q   +T      
Sbjct:   547 NMKDFKVVHFSENPAAEAYESTKNMMEKLQAEIERLKRRNKKLEDDNEQRLNETTSTGGM 606

Query:   595 YISGK-ITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKIVMDEHQRANGIPV 653
              ++ K   QL+ ++ +   +  + +  F      FR  C  L GY+I   +   AN    
Sbjct:   607 TLNFKEFNQLQAELESANGKMRKMRDCFKAAREEFRDVCYMLLGYRI---DRIGAN---- 659

Query:   654 THFTLQSIYAQGDDEKLEFEYESSNTNIMVND---YTSQPEISRQVDIFVRKMNSIPAFT 710
             +++ + S++A+G D+ L+     SN   ++     +T  P I +Q+       ++ PAF 
Sbjct:   660 SNYRISSMFAEGPDDYLDISLNESNCLALLESPYSHTFNPPIDQQL-----AASNFPAFF 714

Query:   711 ANLTVESFNRRTLS 724
             + LT+E F + T++
Sbjct:   715 SALTLELFQKATVT 728

GO:0003674 "molecular_function" evidence=ND

GO:0031577 "spindle checkpoint" evidence=IMP

GO:0072686 "mitotic spindle" evidence=IDA

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005654 "nucleoplasm" evidence=IDA

GO:0000776 "kinetochore" evidence=IDA

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IMP

GO:0051315 "attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation" evidence=IMP

MGI|MGI:1341857 Mad1l1 "MAD1 mitotic arrest deficient 1-like 1" [Mus musculus (taxid:10090)]

 Score = 207 (77.9 bits), Expect = 7.3e-17, Sum P(2) = 7.3e-17
 Identities = 69/258 (26%), Positives = 127/258 (49%)

Query:   477 EELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLG--- 533
             + LE  L   +   S          E+++    +++ LE E  RL  E  +LE ++    
Sbjct:   471 DTLEMELKMLKAQTSSAESSFSFCKEEVDALRLKVEELEGERSRLEQEKQVLEMQMEKLT 530

Query:   534 -HGDFSSENTKVLRM-VNTLAVDNEAK-QTIEALQTELQKTKEKLQAVEELKSQSGDTGK 590
               GD++   TKVL M +N +++  + + +  + LQ E ++ +  + A+E       D  +
Sbjct:   531 LQGDYNQSRTKVLHMSLNPISMARQRQHEDHDRLQEECERLRGLVHALERGGPIPADL-E 589

Query:   591 LVDSYISGK-ITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKI-VMDEHQRA 648
                S  S K + +L++Q+ + E + +R K VF  +I  FR+ C  L GY+I V  E Q  
Sbjct:   590 AASSLPSSKEVAELRKQVESAELKNQRLKEVFQTKIQEFRKVCYTLTGYQIDVTTESQ-- 647

Query:   649 NGIPVTHFTLQSIYAQGDDEKLEFEY---ESSNTNIMVNDYT-SQPEISRQVDIFVRKMN 704
                    + L S YA+   + L F+      S   ++  +++ S PE+   +++ + + +
Sbjct:   648 -------YRLTSRYAEHQTDCLIFKATGPSGSKMQLLETEFSRSVPEL---IELHLLQQD 697

Query:   705 SIPAFTANLTVESFNRRT 722
             SIPAF + LT+E F+R+T
Sbjct:   698 SIPAFLSALTIELFSRQT 715

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000776 "kinetochore" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0072686 "mitotic spindle" evidence=ISO

GO:0090235 "regulation of metaphase plate congression" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	724
pfam05557	722	pfam05557, MAD, Mitotic checkpoint protein	1e-123
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-12
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-09
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	4e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-09
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	8e-09
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	8e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-07
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-07
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	4e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-06
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-06
COG5022	1463	COG5022, COG5022, Myosin heavy chain [Cytoskeleton	3e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-06
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	9e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-05
COG2433	652	COG2433, COG2433, Uncharacterized conserved protei	2e-05
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	4e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-05
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	8e-05
PHA02562	562	PHA02562, 46, endonuclease subunit; Provisional	8e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	9e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-04
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	3e-04
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	4e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-04
COG5022	1463	COG5022, COG5022, Myosin heavy chain [Cytoskeleton	5e-04
pfam01496	707	pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni	6e-04
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	7e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.001
PLN02939	977	PLN02939, PLN02939, transferase, transferring glyc	0.001
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	0.002
PRK05771	646	PRK05771, PRK05771, V-type ATP synthase subunit I;	0.002
PLN02939	977	PLN02939, PLN02939, transferase, transferring glyc	0.003
COG5283	1213	COG5283, COG5283, Phage-related tail protein [Func	0.003
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.004

>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein

 Score =  384 bits (988), Expect = e-123
 Identities = 259/704 (36%), Positives = 401/704 (56%), Gaps = 76/704 (10%)

Query: 71  ALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQLLK 130
           AL++++KQV +  + L+          AE  + + + +  E EL   +      Q +L +
Sbjct: 43  ALSSLQKQVEESMTLLQR---------AELIRSKSKLIQLENELMQKELEHKRAQIELER 93

Query: 131 EVDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLSDSIER 190
           +     E  ++++    ELE + +    L +KAE+ AA AEE+A LL+       D ++ 
Sbjct: 94  KASTLAENYERELDRNLELEVRLKALEELEKKAENEAAEAEEEAKLLK-------DKLDA 146

Query: 191 EKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLN 250
           E  +L NE     +E+K SISRI  DL +M+CRAQNA+ E ++L++++++L+EQL EC  
Sbjct: 147 ESLKLQNEKEDQLKEAKESISRIKNDLSEMQCRAQNADTELKLLESELEELREQLEECQK 206

Query: 251 QKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEV-------------------- 290
           + +E EKKL S T ++ S+ D+++ +KHL+EE++ YE +                     
Sbjct: 207 ELAEAEKKLQSLTSEQASSADNSVKIKHLEEELKRYEQDAEVVKSMKEQLLQIPELEREL 266

Query: 291 ----REARKLKASYENTELLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKF 346
                E RKL++  E+ ELLKE+L + +SR ER E+   KL +++   ++LE+EL SWK 
Sbjct: 267 AALREENRKLRSMKEDNELLKEELEDLQSRLERFEKMREKLADLELEKEKLENELKSWKS 326

Query: 347 LIRDIP-GVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETE 405
           L++DI   +   +D+  +   LQ E +    K G  ++  KQ+E  L   QL +Q A +E
Sbjct: 327 LLQDIGLNLRTPDDLSRRIVVLQNEELQLKEKNGSISSSAKQLETTLQQLQLERQKAVSE 386

Query: 406 AALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKP------KNDGGGDERANL 459
              +K+K E  K+ V+R++  L++VT+ERD LR ++N + K                   
Sbjct: 387 ILELKKKLEALKALVRRLQRRLTLVTKERDGLRAILNSYDKELTETSVSGQLMKRLEEAE 446

Query: 460 TLTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEER---------- 509
            L ++++S LAK E  + ELE ++  Q++ N+    EIK L E+L + ER          
Sbjct: 447 DLVQKVQSHLAKMENQLSELEEDVGQQKDRNNTLETEIKLLKEQLVSNERLLSFVKEATN 506

Query: 510 ----RIKSLERENDRLRSEISLLESKLGH----GDFSSENTKVLRMVNTLAVDNE--AKQ 559
               +I++LERE DRLR E SLLE KL H    GD+++  TKVL M    A + E  AKQ
Sbjct: 507 ALRLKIETLERERDRLRQEKSLLEMKLEHLCLQGDYNASRTKVLHMSLNPASEAEQIAKQ 566

Query: 560 TIEALQTELQKTKEKLQAVEELKSQSGDTGKLVDSYISGK-ITQLKEQIATLEKREERYK 618
           TIEALQ E +K KE+LQA+EE KSQ GD  K V S+IS K I QLK+Q+ + EK+ +R K
Sbjct: 567 TIEALQAECEKLKERLQALEEGKSQPGDLEKAVGSHISSKEIAQLKKQVESAEKKNQRLK 626

Query: 619 TVFADRISVFRRACCELFGYKIVMDEHQRANGIPVTHFTLQSIYAQGDDEKLEFEYESSN 678
            VF  +IS FRRAC  LFGYKI +         P + + L S+YA+ DD+KL F+ ESSN
Sbjct: 627 EVFQTKISEFRRACYMLFGYKIDI--------TPNSQYRLTSMYAEHDDDKLIFKAESSN 678

Query: 679 TNIMVNDYTSQPEISRQVDIFVRKMNSIPAFTANLTVESFNRRT 722
            ++ + +  S    ++ +++ + K NSIPAF + LT+E F+R+T
Sbjct: 679 GSMQLLETPSSGTFAKLIELHLLKQNSIPAFLSALTLELFSRQT 722

This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated. Length = 722

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 70.1 bits (172), Expect = 3e-12
 Identities = 68/377 (18%), Positives = 167/377 (44%), Gaps = 39/377 (10%)

Query: 71   ALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQL-- 128
            +    ++++++ + +L EL     K E E K  +++    E  L   + +   L+ QL  
Sbjct: 661  SSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEE 720

Query: 129  ----LKEVDDSRERLKKQIQLCSELEAKHRNELNLRR----KAESAAASAEEKASLLEGK 180
                L  +++  E+L+ +++   E   +   EL   +    + E    S EE  + L+ +
Sbjct: 721  LKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEE 780

Query: 181  LTHLSDSIEREKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKD 240
            +  L +  +  ++ L  E+ +   E++  +  +  +LE +E R +  E+E E L+ ++++
Sbjct: 781  IEELEEKRQALQEELE-ELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEE 839

Query: 241  LKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREARKLKASY 300
            L+E+L+E   +  E+EK+L                ++ L+ E    E E++E  + K   
Sbjct: 840  LEEKLDELEEELEELEKELEE----------LKEELEELEAEKEELEDELKELEEEKEEL 889

Query: 301  ENTELLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGVSCSEDI 360
            E      E  L E   +E +E+   +L E++  +++LE EL   +  + +    +   ++
Sbjct: 890  EEELRELESELAEL--KEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETEL 947

Query: 361  PVKFAALQKEVIDSMMKLGEANAQLKQME-VALDAAQLGKQSAETEAALVKEKEEVSKSE 419
                            ++     +++ +  V L A +  ++  E    L  ++E++ +  
Sbjct: 948  --------------EREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEE-A 992

Query: 420  VKRIESMLSVVTEERDK 436
             +++  ++  + +E+ +
Sbjct: 993  KEKLLEVIEELDKEKRE 1009

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 64.4 bits (157), Expect = 2e-10
 Identities = 71/376 (18%), Positives = 162/376 (43%), Gaps = 43/376 (11%)

Query: 160 RRKAESAAASAEEKASLLEGKLTHLS---DSIEREKKRLNNEVTQLKRESKSSISRIGAD 216
           + +AE      EE    LE  L  L    + +ER+ ++            +  ++ + A 
Sbjct: 174 KEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAK 233

Query: 217 LEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILV 276
           L+++    +  E+E   L+ ++++L+E+L E   +  E++ +L                 
Sbjct: 234 LKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEE--------------- 278

Query: 277 KHLQEEIRNYEAEVREARKLKASYE-NTELLKEKLLEEKSRRERVEQELAKLREVQQSMD 335
             L+EE+   + E+ E ++     E    LL+E+L E ++  E +E+ L +L+E    ++
Sbjct: 279 --LREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKE---KIE 333

Query: 336 QLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAA 395
            L++EL                E+       L++ + +      E   +L  +   L+  
Sbjct: 334 ALKEEL----------------EERETLLEELEQLLAELEEAKEELEEKLSALLEELEEL 377

Query: 396 QLGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDE 455
               ++   E A ++ +    ++E++ ++  +  + E  ++L   + + K+   +   + 
Sbjct: 378 ---FEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAEL 434

Query: 456 RANLTLTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLE 515
               T  +EL   L + EE +EEL   L   +   +  ++E++ L ++L++ E R+  LE
Sbjct: 435 EELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLE 494

Query: 516 RENDRLRSEISLLESK 531
            E    +   ++LE+ 
Sbjct: 495 AEQRASQGVRAVLEAL 510

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 61.7 bits (150), Expect = 1e-09
 Identities = 87/410 (21%), Positives = 178/410 (43%), Gaps = 77/410 (18%)

Query: 126  EQLLKEVDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLS 185
            ++L +E+ +   +L+K  +    L+ + R+  +L  +        E +   L+ +L  L 
Sbjct: 670  KELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAAL- 728

Query: 186  DSIEREKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQL 245
               E E ++L + + +L+ E    +  +  +LE+++ R +  E+E E L+  +  LKE++
Sbjct: 729  ---EEELEQLQSRLEELEEE----LEELEEELEELQERLEELEEELESLEEALAKLKEEI 781

Query: 246  NECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREARKLKASYENTEL 305
             E   ++                          LQEE+   E E+ EA +   +      
Sbjct: 782  EELEEKRQA------------------------LQEELEELEEELEEAERRLDA------ 811

Query: 306  LKEKLLEEKSRRERVEQELAKLR----EVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIP 361
            L+ +L   + RRER+EQE+ +L     E+++ +D+LE+EL                    
Sbjct: 812  LERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEE------------------ 853

Query: 362  VKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVK 421
                 L+KE+ +   +L E  A+ +++E  L   +  K+  E E   ++ +    K E++
Sbjct: 854  -----LEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIE 908

Query: 422  RIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEFIEELES 481
            ++   L  +  + ++L   + E ++   +   D     TL  ELE  + + EE IE L  
Sbjct: 909  KLRERLEELEAKLERLEVELPELEEELEEEYED-----TLETELEREIERLEEEIEALG- 962

Query: 482  NLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESK 531
                   +N R  +E + + E+    + + + LE   ++L   I  L+ +
Sbjct: 963  ------PVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKE 1006

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 60.5 bits (147), Expect = 3e-09
 Identities = 72/328 (21%), Positives = 153/328 (46%), Gaps = 40/328 (12%)

Query: 221 ECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQ 280
           E +A+  E E  +L  ++++L+E+L E   +  E E++L   T  E    +  +    L+
Sbjct: 217 ELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELT-AELQELEEKLEE--LR 273

Query: 281 EEIRNYEAEVREARK-LKASYENTELLKEKLLEEKSRRERVEQELAK----LREVQQSMD 335
            E+   E E+ E +K L A       L+++    + R   +E++L +    L E++  +D
Sbjct: 274 LEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLD 333

Query: 336 QLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAA 395
           +L +EL+  +                 K   L++E+     +L E  A+L+++E  L+  
Sbjct: 334 ELAEELAELE----------------EKLEELKEELESLEAELEELEAELEELESRLEEL 377

Query: 396 QLGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDE 455
           +   ++  ++ A ++ +     +E++R+E+ L  + + R++L+  + E           +
Sbjct: 378 EEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEEL---------LK 428

Query: 456 RANLTLTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLE 515
           +      KEL++ L + EE +EEL+  L   +E     R+E++         E+ + + E
Sbjct: 429 KLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEA-------EQALDAAE 481

Query: 516 RENDRLRSEISLLESKLGHGDFSSENTK 543
           RE  +L++ +  LE    + +  SE  K
Sbjct: 482 RELAQLQARLDSLERLQENLEGFSEGVK 509

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 59.7 bits (145), Expect = 4e-09
 Identities = 100/473 (21%), Positives = 214/473 (45%), Gaps = 58/473 (12%)

Query: 65  KSDFLDALTNVEKQVRDYQSKLEELNENFSKAE---AERKKFRDQFLYAEQELAAAKGRE 121
             ++LD L  +EK++   + ++  + E   + E      ++ + +    E+ L   + R 
Sbjct: 302 YEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERH 361

Query: 122 GVLQEQLLKEVDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKL 181
            + +E   K   +  ERLKK++   +  + +   E   + K E      EE+ S +  ++
Sbjct: 362 ELYEE--AKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEE-----IEEEISKITARI 414

Query: 182 THLSDSIEREKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEM--LKNQMK 239
                 +++E K L   + +LK ++K      G +L +   +    E  +E+  ++ ++K
Sbjct: 415 G----ELKKEIKELKKAIEELK-KAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELK 469

Query: 240 DLKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVRE--ARKLK 297
           +++E+  +   +  E+EK L   +          I +K L E+++  E ++++    +L+
Sbjct: 470 EIEEKERKLRKELRELEKVLKKES--------ELIKLKELAEQLKELEEKLKKYNLEELE 521

Query: 298 ASYENTELLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGVSCS 357
              E  E LKEKL++ K   + +++EL KL E+++ + +LE +L                
Sbjct: 522 KKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKL---------------- 565

Query: 358 EDIPVKFAALQKEVIDSMMK-LGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEEVS 416
           +++  + A L KE+ +   + + E   +LK++E   +   L  + AE E    +++ +  
Sbjct: 566 DELEEELAELLKELEELGFESVEELEERLKELEPFYN-EYLELKDAEKELEREEKELKKL 624

Query: 417 KSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEFI 476
           + E+ +    L+   +  ++LR  + E +K  ++   +E     L  EL   LA     +
Sbjct: 625 EEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYL--ELSRELAGLRAEL 682

Query: 477 EELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLE 529
           EELE            +R+EIK   EKL  E    +  ++E ++L   +  +E
Sbjct: 683 EELEK-----------RREEIKKTLEKLKEELEEREKAKKELEKLEKALERVE 724

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 58.9 bits (143), Expect = 8e-09
 Identities = 107/605 (17%), Positives = 233/605 (38%), Gaps = 80/605 (13%)

Query: 74  NVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQLLKEVD 133
            +E+Q +  + +L  L     + EA+ ++   +     +ELA  + +     E+L +E++
Sbjct: 299 RLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEK----LEELKEELE 354

Query: 134 DSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLSDSIEREKK 193
                L++      ELE++            S  A  E + + L  ++  L   +ER + 
Sbjct: 355 SLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLED 414

Query: 194 RLNNEVTQ----LKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECL 249
           R      +    LK+  ++ +  + A+LE++E   +  ++E E L+  +++L+E+L E  
Sbjct: 415 RRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAE 474

Query: 250 NQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREARKLKASYENTELLKEK 309
                 E++L+    +  S          L+    N E      + L  +      +   
Sbjct: 475 QALDAAERELAQLQARLDS----------LERLQENLEGFSEGVKALLKNQSGLSGILGV 524

Query: 310 LLEEKSRRERVEQEL-AKLREVQQS--MDQLEDELSSWKFL------------------- 347
           L E  S  E  E  + A L    Q+  ++ L     +  FL                   
Sbjct: 525 LSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGT 584

Query: 348 ---------IRDIPGVSCSEDIPVKFAALQKEVIDSMM-------KLGEANAQLKQME-- 389
                    +++I G        VKF    ++ +  ++        L  A    K++   
Sbjct: 585 EIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPG 644

Query: 390 ---VALDAAQLGK------QSAETEAALVKEKEEVSK--SEVKRIESMLSVVTEERDKLR 438
              V LD   +         SA+T +++++ + E+ +   +++ +E  ++ + +   +LR
Sbjct: 645 YRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELR 704

Query: 439 NVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIK 498
             + E ++       +          L   LA+ E  +E+LE  +    +  +    EI+
Sbjct: 705 KELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIE 764

Query: 499 SLSEKLNNE-------ERRIKSLERENDRLRSEISLLESKLG--HGDFSSENTKVLRMVN 549
            L E+L          E  I+ LE + ++L+ E+  L   L     + +  N +   +  
Sbjct: 765 ELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE 824

Query: 550 TLAVDNEAKQTIEALQTELQKTKEKLQA-VEELKSQSGDTGKLVDSYISGKITQLKEQIA 608
            L          E    +L++  E+L   +E L ++  +  +L++  +  ++  L  + A
Sbjct: 825 RLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEE-LESELEALLNERA 883

Query: 609 TLEKR 613
           +LE+ 
Sbjct: 884 SLEEA 888

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 59.0 bits (143), Expect = 8e-09
 Identities = 107/561 (19%), Positives = 242/561 (43%), Gaps = 33/561 (5%)

Query: 70  DALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQLL 129
           + +   + ++ + + +L EL E+        ++        ++     + +E   +E+L 
Sbjct: 178 EVIKEAKAKIEELEGQLSELLEDIEDLLEALEE------ELKELKKLEEIQEEQEEEELE 231

Query: 130 KEVDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLSDSIE 189
           +E++   ERL +  +    LE      L +      A    EE+   LE  L  L + IE
Sbjct: 232 QEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIE 291

Query: 190 R---EKKRLNNEVTQLKRESK--SSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQ 244
           R    ++ +     +L+        +  +   L+ +E R +  E++ E L++++++L E+
Sbjct: 292 RLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEE 351

Query: 245 LNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREARKLKASYENTE 304
            NE      E  K+L     +E        L K L+   +  EA      +L       E
Sbjct: 352 KNELAKLLEERLKEL-----EERLEELEKELEKALERLKQLEEAIQELKEELAELSAALE 406

Query: 305 LLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKF 364
            ++E+L E +   E +E+EL +L E  + +++  ++L S + +I ++ G    E  PV  
Sbjct: 407 EIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGA--GEKCPVCG 464

Query: 365 AALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKRIE 424
             L +E    +++L E   +L+++E  L   +   +  E    L KE  E+ +  ++ +E
Sbjct: 465 QELPEEHEKELLELYE--LELEELEEELSREKEEAELREEIEELEKELRELEEELIELLE 522

Query: 425 SMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEFIEELESNLH 484
              ++  E  +KL  + N  ++ +      E+  L   KE    L  + + ++EL   L 
Sbjct: 523 LEEALKEELEEKLEKLENLLEELEEL---KEKLQLQQLKEELRQLEDRLQELKELLEELR 579

Query: 485 AQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEI---SLLESKLGHGDFSSEN 541
               +   +++E++ L E+L   ++++K LE    +L   +    L E++    +   E 
Sbjct: 580 ----LLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEEL 635

Query: 542 TKVLRMVN-TLAVDNEAKQTIEALQTELQKTKEKLQAVEELKSQSGDTGKLVDSY--ISG 598
              L  +N    ++   +  +E L+ ++++ + +++   +         + ++    +  
Sbjct: 636 ESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEE 695

Query: 599 KITQLKEQIATLEKREERYKT 619
           ++ QL+E++  L K+    + 
Sbjct: 696 ELEQLREELEELLKKLGEIEQ 716

Length = 908

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 58.6 bits (142), Expect = 8e-09
 Identities = 103/536 (19%), Positives = 203/536 (37%), Gaps = 21/536 (3%)

Query: 70  DALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQL- 128
             +  +E+++ + + + E L E  ++         +     E+EL   +     L+E++ 
Sbjct: 232 QEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIE 291

Query: 129 -LKEVDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLSDS 187
            L+E++   E L+++++    L  +    L   +  E      EEK   LE +L  L++ 
Sbjct: 292 RLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEE 351

Query: 188 IEREKKRLN---NEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQ 244
                K L     E+ +   E +  + +    L+++E   Q  ++E   L   +++++E+
Sbjct: 352 KNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEE 411

Query: 245 LNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREARKLKASYENTE 304
           L E   +  E+E++L      E       +  +  Q E +            K      E
Sbjct: 412 LEELEKELEELERELE-----ELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQE 466

Query: 305 LLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKF 364
           L +E   E     E   +EL +    ++   +L +E+   +  +R        E++    
Sbjct: 467 LPEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELR-----ELEEELIELL 521

Query: 365 AALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKRIE 424
              +    +   KL +    L+++E   +  QL +   E      + +E     E  R+ 
Sbjct: 522 ELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLL 581

Query: 425 SMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKE--EFIEELESN 482
                  EE ++LR  + E KK   +          L + LE S A+ E  E  EELES 
Sbjct: 582 RTRK---EELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESE 638

Query: 483 LHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLGHGDFSSENT 542
           L         +     +L E     E     + RE  R+ +E  L E          E  
Sbjct: 639 LEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELE 698

Query: 543 KVL-RMVNTLAVDNEAKQTIEALQTELQKTKEKLQAVEELKSQSGDTGKLVDSYIS 597
           ++   +   L    E +Q IE L++   + +E  + +E+L+       +L +    
Sbjct: 699 QLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALELLEELREKLGK 754

Length = 908

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 57.8 bits (140), Expect = 2e-08
 Identities = 58/282 (20%), Positives = 131/282 (46%), Gaps = 26/282 (9%)

Query: 76  EKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQLLKEVDDS 135
           ++++ + + ++EEL     +   E ++ +++ L  ++E+   +G   +L+E+L +  ++ 
Sbjct: 259 QEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENEL 318

Query: 136 RERLKKQIQLCSELEAKHRN---ELNLRRKAESAAASAEEKASLLEGKLTHLSDSIEREK 192
            E  ++  +L  ++EA          L  + E   A  EE    LE KL+ L + +E   
Sbjct: 319 EELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELF 378

Query: 193 KRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQK 252
           + L  E+ +L+ E    ++ I  +LE+++   ++ E+  E L  +++DLKE+L E   + 
Sbjct: 379 EALREELAELEAE----LAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAEL 434

Query: 253 SEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREARKLKASYENTELLKEKLLE 312
            E++ +L           + N  ++ L+E++      ++E             L+E+L  
Sbjct: 435 EELQTELE----------ELNEELEELEEQLEELRDRLKELE------RELAELQEELQR 478

Query: 313 EKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGV 354
            +     +E  L +L   Q++   +   L + +     +PGV
Sbjct: 479 LEKELSSLEARLDRLEAEQRASQGVRAVLEALE---SGLPGV 517

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 57.0 bits (138), Expect = 3e-08
 Identities = 57/276 (20%), Positives = 115/276 (41%), Gaps = 22/276 (7%)

Query: 72  LTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQLLKE 131
           +    +++ + + K+EEL E  ++ E    + R +    E+EL   + +E     + +  
Sbjct: 672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLR-KELEELSRQISA 730

Query: 132 VDDSRERLKKQIQLC-----------SELEAKHRNELNLRRKAESAAASAEEKASLLEGK 180
           +     RL+ +++             +ELEA+         +AE   A AE +   LE +
Sbjct: 731 LRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQ 790

Query: 181 LTHLSD---SIEREKKRLNNEVTQLKRES---KSSISRIGADLEKMECRAQNAEKESEML 234
           +  L +   ++      L  E+T L  E+   +  +  +   +   E R ++ E++ E L
Sbjct: 791 IEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEEL 850

Query: 235 KNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREAR 294
              ++ L  ++ E      E+E +L +   +  S       +  L+ E+     E+RE  
Sbjct: 851 SEDIESLAAEIEELEELIEELESELEALLNERAS---LEEALALLRSELEELSEELRELE 907

Query: 295 -KLKASYENTELLKEKLLEEKSRRERVEQELAKLRE 329
            K        E L+EKL + + R E +E  +  L+E
Sbjct: 908 SKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 56.3 bits (136), Expect = 5e-08
 Identities = 110/576 (19%), Positives = 229/576 (39%), Gaps = 44/576 (7%)

Query: 64  VKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKK-FRDQFLYAEQELAAAKGREG 122
            +   L+ L  +  ++ + + +LEE      +   E  +  R++    E ELA  +    
Sbjct: 341 ERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELE 400

Query: 123 VLQEQ---LLKEVDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEG 179
            L+ +   L + ++   ERL+   +   ELEA+         +        EE+   L  
Sbjct: 401 ELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRD 460

Query: 180 KLTHLSDSIEREKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMK 239
           +L  L    ERE   L  E+ +L++E  S  +R+   LE  +  +Q      E L++ + 
Sbjct: 461 RLKEL----ERELAELQEELQRLEKELSSLEARLDR-LEAEQRASQGVRAVLEALESGLP 515

Query: 240 DLKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVK--HLQEEIRNYEAEVREARKLK 297
            +   + E +  K + E  L ++           ++V+   + ++   +  E +  R   
Sbjct: 516 GVYGPVAELIKVKEKYETALEAA----LGNRLQAVVVENEEVAKKAIEFLKENKAGR--- 568

Query: 298 ASYENTELLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGVSCS 357
                T L  +++   +S +         L       D   +     +F++ D   V   
Sbjct: 569 ----ATFLPLDRIKPLRSLKSDAAPGFLGLASDLIDFDPKYEPAV--RFVLGDTLVVDDL 622

Query: 358 ED---------IPVKFAALQKEVID-SMMKLGEANAQLKQMEVALDAAQLGKQSAETEAA 407
           E          I  +   L  ++++ S    G +  +   +    +  +L ++ AE EA 
Sbjct: 623 EQARRLARKLRIKYRIVTLDGDLVEPSGSITGGSRNKRSSLAQKRELKELEEELAELEAQ 682

Query: 408 LVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELES 467
           L K +EE+   + +          +  ++LR  + E ++   +   +  A     ++L+S
Sbjct: 683 LEKLEEELKSLKNELRSLE-----DLLEELRRQLEELERQLEELKRELAALEEELEQLQS 737

Query: 468 SLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISL 527
            L + EE +EELE  L   QE      +E++SL E L   +  I+ LE +   L+ E+  
Sbjct: 738 RLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEE 797

Query: 528 LESKLGHGDFSSENTKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQAVEELKSQSGD 587
           LE +L   +   +  +   + +        +Q IE L+ E+++ +EKL  +EE      +
Sbjct: 798 LEEELEEAERRLDALER-ELESLEQRRERLEQEIEELEEEIEELEEKLDELEE----ELE 852

Query: 588 TGKLVDSYISGKITQLKEQIATLEKREERYKTVFAD 623
             +     +  ++ +L+ +   LE   +  +    +
Sbjct: 853 ELEKELEELKEELEELEAEKEELEDELKELEEEKEE 888

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 55.1 bits (133), Expect = 1e-07
 Identities = 51/287 (17%), Positives = 126/287 (43%), Gaps = 18/287 (6%)

Query: 67  DFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQ- 125
           +  + L  +++++++ + +LEEL     + E + ++ R +    E+E+   +     L  
Sbjct: 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN 295

Query: 126 -----EQLLKEVDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGK 180
                EQ  + + +    L++Q++   ELEA+     +   +     A  EEK   L+ +
Sbjct: 296 EISRLEQQKQILRERLANLERQLE---ELEAQLEELESKLDELAEELAELEEKLEELKEE 352

Query: 181 LTHLSDSIEREKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKD 240
           L  L   +E  +  L    ++L  E +  +  + + + ++E +  +   E E L+ +++ 
Sbjct: 353 LESLEAELEELEAELEELESRL-EELEEQLETLRSKVAQLELQIASLNNEIERLEARLER 411

Query: 241 LKEQLNECLNQKSEVEKKLSSSTFQEFSTT--DSNILVKHLQEEIRNYEAEVREARKLKA 298
           L+++      +  E+ KKL  +  +E      +    ++ LQEE+   E  + E R+   
Sbjct: 412 LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREEL- 470

Query: 299 SYENTELLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWK 345
                E  ++ L   +    +++  L  L  +Q++++   + + +  
Sbjct: 471 -----EEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALL 512

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 54.7 bits (132), Expect = 2e-07
 Identities = 70/368 (19%), Positives = 146/368 (39%), Gaps = 64/368 (17%)

Query: 228 EKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSS-----STFQEFSTTDSNILVKHLQEE 282
           ++  E  + +++  +E L    +   E+EK+L          + +         + L+ E
Sbjct: 171 KERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERY---------QELKAE 221

Query: 283 IRNYEAEVREARKLKASYENTELLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELS 342
           +R  E  +  A+  +   E  EL +E         E +E+   +L E ++ +++L+ EL 
Sbjct: 222 LRELELALLLAKLKELRKELEELEEE----LSRLEEELEELQEELEEAEKEIEELKSEL- 276

Query: 343 SWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSA 402
                          E++  +   LQ+E+++   ++ E   ++  +   L+  +   +  
Sbjct: 277 ---------------EELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEEL 321

Query: 403 ETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLT 462
           E     +KEK E  K E++  E++L  + +   +L     E           E     L 
Sbjct: 322 EERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEEL----------EEKLSALL 371

Query: 463 KELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLR 522
           +ELE       E + ELE+              E+  +  +L   +R I+SLE   +RL 
Sbjct: 372 EELEELFEALREELAELEA--------------ELAEIRNELEELKREIESLEERLERLS 417

Query: 523 SEISLLESKLGHGDFSSENTKVLRMVNTLAVD------NEAKQTIEALQTELQKTKEKLQ 576
             +  L+ +L   +   E  +         ++       E +  ++ L+ EL + +E+LQ
Sbjct: 418 ERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQ 477

Query: 577 AVEELKSQ 584
            +E+  S 
Sbjct: 478 RLEKELSS 485

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 54.3 bits (131), Expect = 2e-07
 Identities = 71/305 (23%), Positives = 146/305 (47%), Gaps = 22/305 (7%)

Query: 317 RERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQKEVID--- 373
           +ER ++   KL   ++++D+LED L+    L R +  +    +   ++  L+ E+ +   
Sbjct: 171 KERRKETERKLERTRENLDRLEDILNE---LERQLKSLERQAEKAERYKELKAELRELEL 227

Query: 374 --SMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVT 431
              +++L E   +L++++  L  A+   +    E   ++EK E  + EV  +E  +  + 
Sbjct: 228 ALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQ 287

Query: 432 EERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEFIEELESNLHAQQEINS 491
           +E   L N ++  ++ K      ER        LE  L + E  +EELES L    E  +
Sbjct: 288 KELYALANEISRLEQQK--QILRERL-----ANLERQLEELEAQLEELESKLDELAEELA 340

Query: 492 RQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLGHGDFSSENTKVLRMVNTL 551
              ++++ L E+L + E  ++ LE E + L S +  LE +L      +  +KV ++   +
Sbjct: 341 ELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLE-----TLRSKVAQLELQI 395

Query: 552 AVDNEAKQTIEALQTELQKTKEKLQAVEELKSQSGDTGKLVDSYISGKITQLKEQIATLE 611
           A  N   + +EA    L+  +E+LQ   E   +  +  +L +  +  ++ +L+E++  L+
Sbjct: 396 ASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKE--LQAELEELEEELEELQ 453

Query: 612 KREER 616
           +  ER
Sbjct: 454 EELER 458

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 54.3 bits (131), Expect = 2e-07
 Identities = 116/527 (22%), Positives = 238/527 (45%), Gaps = 48/527 (9%)

Query: 72  LTNVEKQVRDYQSKLEELNENFSKAEAERK---KFRDQFLYAEQELAAAKGREGVLQEQL 128
           L  V +++ +  S+L EL E   K E E K   + +++    E+EL + +G +  L E+ 
Sbjct: 202 LEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKL-EEK 260

Query: 129 LKEVDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLSDSI 188
           ++E+++  E LKK+I    ELE K +    L+ KAE     +E     L+         I
Sbjct: 261 IRELEERIEELKKEI---EELEEKVKELKELKEKAEEYIKLSEFYEEYLDEL-----REI 312

Query: 189 EREKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLK------ 242
           E+   RL  E+  ++   K        +LE+ E R +  +K+ + L+ ++++L+      
Sbjct: 313 EKRLSRLEEEINGIEERIK--------ELEEKEERLEELKKKLKELEKRLEELEERHELY 364

Query: 243 EQLNECLNQKSEVEKKLSSSTFQEFSTTDSNI--LVKHLQEEIRNYEAEVREARKLKASY 300
           E+      +   ++K+L+  T ++       +    + ++EEI    A + E +K     
Sbjct: 365 EEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKEL 424

Query: 301 -ENTELLKE---------KLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRD 350
            +  E LK+         + L E+ R+E +E+  A+L+ +++ + ++E++    +  +R+
Sbjct: 425 KKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRE 484

Query: 351 IPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVK 410
           +  V   E   +K   L +++ +   KL + N +       L+      +  + +   +K
Sbjct: 485 LEKVLKKESELIKLKELAEQLKELEEKLKKYNLE------ELEKKAEEYEKLKEKLIKLK 538

Query: 411 EKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLA 470
            + +  K E++++E +   + E   KL  +  E  +   +    E       +ELE  L 
Sbjct: 539 GEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKE---LEELGFESVEELEERLK 595

Query: 471 KKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLES 530
           + E F  E      A++E+   ++ E+K L E+L+     +   E+  + LR E+  LE 
Sbjct: 596 ELEPFYNEYLELKDAEKELEREEK-ELKKLEEELDKAFEELAETEKRLEELRKELEELEK 654

Query: 531 KLGHGDFSSENTKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQA 577
           K    ++     + L +   LA      + +E  + E++KT EKL+ 
Sbjct: 655 KYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKE 701

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 54.7 bits (132), Expect = 2e-07
 Identities = 76/341 (22%), Positives = 144/341 (42%), Gaps = 45/341 (13%)

Query: 276 VKHLQEEIRNYEAEVREARKLKASYENTELLKEKLLEEKSRRERVEQELAKLREVQQSMD 335
           ++ L+ E R      +   K K  YE  ELLKEK   E+ + E +E++LA L E      
Sbjct: 200 LERLRRE-REKAERYQALLKEKREYEGYELLKEKEALERQK-EAIERQLASLEEEL---- 253

Query: 336 QLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAA 395
                                 E +  + + L+K + +    L E N ++K +    +  
Sbjct: 254 ----------------------EKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE-EQL 290

Query: 396 QLGKQSAETEA--ALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGG 453
           ++ ++  E EA  A ++      + E++  E  L+ +  E DKL   + E ++   +   
Sbjct: 291 RVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERK 350

Query: 454 DERANLTLTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKS 513
                      L    A+ +E +E+L + L    +  +  RDE+K   EKL   +R I  
Sbjct: 351 RRDK-------LTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINE 403

Query: 514 LERENDRLRSEISLLESKLGHGDFSSENTKVLRMVNTLAVDNEAKQ-TIEALQTELQKTK 572
           L+RE DRL+ E+  L  +L   D ++    +   +N L  + E K   I+  + +L++  
Sbjct: 404 LKRELDRLQEELQRLSEEL--ADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLA 461

Query: 573 EKLQAVEELKSQSGDTGKLVDSYISGKITQLKEQIATLEKR 613
             L   E+      +    V+     ++++L+ ++A  E +
Sbjct: 462 ADLSKYEQELYDLKEEYDRVEK----ELSKLQRELAEAEAQ 498

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 53.9 bits (130), Expect = 2e-07
 Identities = 53/277 (19%), Positives = 113/277 (40%), Gaps = 26/277 (9%)

Query: 69  LDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAK-------GRE 121
              L++  +++ + + ++E+L +   K +   ++  +     EQE+   K        R 
Sbjct: 708 SQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARI 767

Query: 122 GVLQEQLLK--------EVDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEK 173
             L+E L K        E   S  R+ +     S+LE +         + E+     E+K
Sbjct: 768 EELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEV-------SRIEARLREIEQK 820

Query: 174 ASLLEGKLTHLSDSIEREKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEM 233
            + L  +  +L   I+ E +    ++ +  +  +  I  +    E++E   +  E     
Sbjct: 821 LNRLTLEKEYLEKEIQ-ELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRD 879

Query: 234 LKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREA 293
           L++++ DLK++ +E   Q  E+E+K+      E         +  L+ ++   E E+ E 
Sbjct: 880 LESRLGDLKKERDELEAQLRELERKIEE---LEAQIEKKRKRLSELKAKLEALEEELSEI 936

Query: 294 RKLKASYENTELLKEKLLEEKSRRERVEQELAKLREV 330
              K   E     +  L + ++  +RVE+E+  L  V
Sbjct: 937 EDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPV 973

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 53.9 bits (130), Expect = 3e-07
 Identities = 71/357 (19%), Positives = 152/357 (42%), Gaps = 22/357 (6%)

Query: 83  QSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQLLKEVDDSRERLKKQ 142
           + KLE   EN  + E   ++   Q    E++            E+  +  +   E  + +
Sbjct: 178 ERKLERTEENLERLEDLLEELEKQLEKLERQA-----------EKAERYQELKAELRELE 226

Query: 143 IQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLSDSIEREKKRLNNEVTQL 202
           + L   L AK +       + E   +  EE+   L+ +L      IE  K  L  E+ + 
Sbjct: 227 LAL---LLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSEL-EELREE 282

Query: 203 KRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSS 262
             E +  +  +  ++E++E       +  E L+N++++L+E+L E   +   ++++L   
Sbjct: 283 LEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELE-- 340

Query: 263 TFQEFSTTDSNILVKHLQEEIRNYEAEVREARKLKASYENTELLKEKLLEEKSRRERVEQ 322
              E  T    +     + E    E E + +  L+   E  E L+E+L E ++    +  
Sbjct: 341 ---ERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRN 397

Query: 323 ELAKL-REVQQSMDQLEDELSSWKFLIRDIPGVSCS-EDIPVKFAALQKEVIDSMMKLGE 380
           EL +L RE++   ++LE      + L  ++  +    E++  +   L +E+ +   +L E
Sbjct: 398 ELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEE 457

Query: 381 ANAQLKQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKL 437
              +LK++E  L   Q   Q  E E + ++ + +  ++E +  + + +V+      L
Sbjct: 458 LRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGL 514

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 53.1 bits (128), Expect = 4e-07
 Identities = 100/539 (18%), Positives = 223/539 (41%), Gaps = 70/539 (12%)

Query: 128 LLKEVDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLS-- 185
           ++KE+    ERL+K I+    +E        L ++ E        + + +  +L  L   
Sbjct: 170 VIKEIKRRIERLEKFIKRTENIE-------ELIKEKEKELEEVLREINEISSELPELREE 222

Query: 186 -DSIEREKKRLN---NEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDL 241
            + +E+E K L     E+ +L++E +S    +     K+E + +  E+  E LK ++++L
Sbjct: 223 LEKLEKEVKELEELKEEIEELEKELES----LEGSKRKLEEKIRELEERIEELKKEIEEL 278

Query: 242 KEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHL---QEEIRNYEAEVREARKLKA 298
           +E++ E    K + E+ +  S F E    +   + K L   +EEI   E  ++E  + + 
Sbjct: 279 EEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEE 338

Query: 299 SYENTELLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGVSCSE 358
             E  +   ++L +     E   +   + +  ++ +++L+  L+               E
Sbjct: 339 RLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLT-----------PE 387

Query: 359 DIPVKFAALQK---EVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVK----- 410
            +  +   L+K   E+ + + K+     +LK+    L  A    + A+ +  +       
Sbjct: 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTE 447

Query: 411 -EKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDER--ANLTLTKELES 467
             ++E+ +     ++ +   + E  +K R +  E ++ +     +        L ++L+ 
Sbjct: 448 EHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKE 507

Query: 468 SLAKKEEF-IEELESNLHAQQEINSRQ---RDEIKSLS---EKLNNEERRIKSLERENDR 520
              K +++ +EELE      +++  +    + EIKSL    EKL   ++++  LE++ D 
Sbjct: 508 LEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDE 567

Query: 521 LRSEISLLESKLGHGDFSSENT-------------KVLRMVNTLAVDNEAKQTIEALQTE 567
           L  E++ L  +L    F S                + L + +        ++ ++ L+ E
Sbjct: 568 LEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEE 627

Query: 568 LQKTKEKLQ----AVEELKSQSGDTGKLVD----SYISGKITQLKEQIATLEKREERYK 618
           L K  E+L      +EEL+ +  +  K         +  +  +L  ++A L    E  +
Sbjct: 628 LDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELE 686

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 52.8 bits (127), Expect = 7e-07
 Identities = 64/377 (16%), Positives = 131/377 (34%), Gaps = 79/377 (20%)

Query: 205 ESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTF 264
           E +  I  +   +E++E +    EK    L+ ++++L+E+L +   +  E+ +++S    
Sbjct: 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQIS---- 729

Query: 265 QEFSTTDSNILVKHLQEEIRNYEAEVREARKLKASYENT-ELLKEKLLEEKSRRERVEQE 323
                      +  L+ E+   E  + +  K     E   E L+E+L E +      E E
Sbjct: 730 ------ALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE 783

Query: 324 LAKLREVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANA 383
           + +L   +  ++QL++EL + +                                L E  A
Sbjct: 784 IEEL---EAQIEQLKEELKALR------------------------------EALDELRA 810

Query: 384 QLKQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNE 443
           +L  +       +   +S E   A  + + E  + +++ +   +                
Sbjct: 811 ELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIE--------------- 855

Query: 444 FKKPKNDGGGDERANLTLTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEK 503
                                L + + + EE IEELES L A     +   + +  L  +
Sbjct: 856 --------------------SLAAEIEELEELIEELESELEALLNERASLEEALALLRSE 895

Query: 504 LNNEERRIKSLERENDRLRSEISLLESKLGHGDFSSENTKVLRMVNTLAVDNEAKQTIEA 563
           L      ++ LE +   LR E+  L  KL   +   E  +V        +  E   T+E 
Sbjct: 896 LEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEE 955

Query: 564 LQTELQKTKEKLQAVEE 580
            +    K ++  +    
Sbjct: 956 AEALENKIEDDEEEARR 972

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 52.4 bits (126), Expect = 8e-07
 Identities = 71/317 (22%), Positives = 139/317 (43%), Gaps = 29/317 (9%)

Query: 78  QVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQ---EQLLKEVDD 134
           +++  + +LE L    S  ++E ++  ++     QEL+ A  + G ++   EQL +E + 
Sbjct: 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEK 734

Query: 135 SRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLT----HLSDSIER 190
            +ERL++  +  S LE +  N  +  ++ E+     EE    LE  L      LS S   
Sbjct: 735 LKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIP 794

Query: 191 EKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLN 250
           E +   +++ +     ++ +  I   L ++    +  EKE + L+ Q  DLKE       
Sbjct: 795 EIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKE------- 847

Query: 251 QKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREARK-LKASYENTELLKEK 309
           Q   +EK++           + N   + L+EE+   EA +R+    L    +  + L+ +
Sbjct: 848 QIKSIEKEIE----------NLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQ 897

Query: 310 LLEEKSRRERVEQELAKLR----EVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKFA 365
           L E + + E +E ++ K R    E++  ++ LE+ELS  +    +   +   E       
Sbjct: 898 LRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQ 957

Query: 366 ALQKEVIDSMMKLGEAN 382
           A  + V + +  L   N
Sbjct: 958 AELQRVEEEIRALEPVN 974

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 52.4 bits (126), Expect = 8e-07
 Identities = 64/349 (18%), Positives = 132/349 (37%), Gaps = 53/349 (15%)

Query: 187 SIEREKKRLNNEVTQLKRESK-----SSISRIGADLEKMECRAQNAEKESEMLKNQMKDL 241
             EREK      + + KRE +          +    E +E +  + E+E E L  ++ +L
Sbjct: 204 RREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISEL 263

Query: 242 KEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREARKLKASYE 301
           +++L E      E+ KK+     +E            ++E+I   EAE+    +      
Sbjct: 264 EKRLEEIEQLLEELNKKIKDLGEEEQLR---------VKEKIGELEAEIASLERS----- 309

Query: 302 NTELLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIP 361
               + EK  E +   ER+ +  A++ ++   +++LE E+   +                
Sbjct: 310 ----IAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEER---------------- 349

Query: 362 VKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVK 421
            +   L +E  +   +L +  A+L++++      +   +    +   +K +    K E+ 
Sbjct: 350 KRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELD 409

Query: 422 RIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEFIEELES 481
           R++  L  ++EE   L   +   +   N              ELE     K   I++ E 
Sbjct: 410 RLQEELQRLSEELADLNAAIAGIEAKIN--------------ELEEEKEDKALEIKKQEW 455

Query: 482 NLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLES 530
            L       S+   E+  L E+ +  E+ +  L+RE     ++    E 
Sbjct: 456 KLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEE 504

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 52.0 bits (125), Expect = 1e-06
 Identities = 62/356 (17%), Positives = 144/356 (40%), Gaps = 36/356 (10%)

Query: 203  KRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSS- 261
             R   + + R+   LE ++    + + E   ++N++ +L ++L++   +  E+EK++   
Sbjct: 669  SRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQL 728

Query: 262  ----STFQEFSTTDSNILVKHLQEEIRNYEAEVREARKLKASYENTELLKEKLLEEKSRR 317
                   +E    +    +  L++EI N ++E++E        E      E L + +   
Sbjct: 729  EQEEEKLKE-RLEELEEDLSSLEQEIENVKSELKELEARIEELE------EDLHKLEEAL 781

Query: 318  ERVEQELA--KLREVQQSMDQLEDELSSWKFLIRDIPG-------------------VSC 356
              +E  L+  ++ E+Q  + +LE+E+S  +  +R+I                        
Sbjct: 782  NDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQ 841

Query: 357  SEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEEVS 416
              D+  +  +++KE+ +   K  E   +L+++E AL    L  +  + +    + + ++ 
Sbjct: 842  RIDLKEQIKSIEKEIENLNGKKEELEEELEELEAAL--RDLESRLGDLKKERDELEAQLR 899

Query: 417  KSEVKRIESMLSVVT-EERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEF 475
            + E K  E    +    +R        E  + +     D +       E E SL   +  
Sbjct: 900  ELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAE 959

Query: 476  IEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESK 531
            ++ +E  + A + +N     E + + ++L+  + +   LE E   +   I   E K
Sbjct: 960  LQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 69/274 (25%), Positives = 128/274 (46%), Gaps = 30/274 (10%)

Query: 68  FLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQ 127
             D L  + +Q+ + + +LEEL    +  E E ++ + +    E+EL   +     LQE+
Sbjct: 700 LEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQER 759

Query: 128 LLKEVDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLSDS 187
           L +      E L+   +  ++L+ +       R+  +      EE+    E +L    D+
Sbjct: 760 LEEL----EEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRL----DA 811

Query: 188 IEREKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNE 247
           +ERE + L     +L++E    I  +  ++E++E +    E+E E L+ ++++LKE+L E
Sbjct: 812 LERELESLEQRRERLEQE----IEELEEEIEELEEKLDELEEELEELEKELEELKEELEE 867

Query: 248 CLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREARKLKASYENT-ELL 306
              +K E+E +L                 K L+EE    E E+RE     A  +   E L
Sbjct: 868 LEAEKEELEDEL-----------------KELEEEKEELEEELRELESELAELKEEIEKL 910

Query: 307 KEKLLEEKSRRERVEQELAKLREVQQSMDQLEDE 340
           +E+L E +++ ER+E EL +L E  +   +   E
Sbjct: 911 RERLEELEAKLERLEVELPELEEELEEEYEDTLE 944

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 96/486 (19%), Positives = 198/486 (40%), Gaps = 38/486 (7%)

Query: 158 NLRRKAESAAASAEEKASLLEGKLTHLSDSIEREKKRLNNEVTQLKRESKSSISRIGADL 217
            L    +     A+ K   LEG+L+ L + IE   + L  E+ +LK+  +    +   +L
Sbjct: 171 KLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEEL 230

Query: 218 EKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSST---FQEFSTTDSNI 274
           E+     +    E E  K ++++LK +L E  + + E  K          +     +   
Sbjct: 231 EQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEE-- 288

Query: 275 LVKHLQEEIRNYEAEVREARKLKASYENTELLKEKLLEEKSRRERVEQELAKLREVQQSM 334
            ++ L+E  R  E    E   L+A  E  E L EKL   + R E++E++L KL    + +
Sbjct: 289 KIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEEL 348

Query: 335 DQLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDS-------MMKLGEANAQLKQ 387
            + ++EL+               +++  +   L+KE+  +          + E   +L +
Sbjct: 349 AEEKNELAKLLEER--------LKELEERLEELEKELEKALERLKQLEEAIQELKEELAE 400

Query: 388 MEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKP 447
           +  AL+  Q   +  E E   ++ + E  + E+K++E  ++ +  +   +  +    +K 
Sbjct: 401 LSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKC 460

Query: 448 -----KNDGGGDERANLTLTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSE 502
                +     ++        ELE  L ++    +E        +E+    R+  + L E
Sbjct: 461 PVCGQELPEEHEKELLELYELELE-ELEEELSREKEEAELREEIEELEKELRELEEELIE 519

Query: 503 KLNNEERRIKSLERENDRLRSEISLLESKLGHG----------DFSSENTKVLRMVNTLA 552
            L  EE   + LE + ++L + +  LE                       ++  ++  L 
Sbjct: 520 LLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELR 579

Query: 553 VDNEAKQTIEALQTELQKTKEKLQAVEELKSQSGDTGKLVDSYISGKITQLKEQIATLEK 612
           +    K+ +E L+  L++ K+KL+ +EE  SQ  +  + ++  +S    +L+E    LE 
Sbjct: 580 LLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLE--LSEAENELEEAEEELES 637

Query: 613 REERYK 618
             E+  
Sbjct: 638 ELEKLN 643

Length = 908

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 50.8 bits (122), Expect = 3e-06
 Identities = 68/336 (20%), Positives = 133/336 (39%), Gaps = 40/336 (11%)

Query: 293 ARKLKASYENTELLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIP 352
           +R  +     +     +L   + R E +++EL+ L+   + ++   DELS     + D  
Sbjct: 659 SRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQ---ELSDAS 715

Query: 353 GVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDA-----AQLGKQSAETEAA 407
                 +I  +   L++E      +L E    L  +E  ++       +L  +  E E  
Sbjct: 716 RK--IGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEED 773

Query: 408 LVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELES 467
           L K +E ++  E +   S +  +  E  KL   V+  +    +            + LE 
Sbjct: 774 LHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEK 833

Query: 468 SLAKKEEFIEELE----SNLHAQQEINSRQRD---EIKSLSEKLNNEERRIKSLERENDR 520
            + + +E   +L+    S     + +N ++ +   E++ L   L + E R+  L++E D 
Sbjct: 834 EIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDE 893

Query: 521 LRSEISLLESKLGHGDFSSENTKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQAVEE 580
           L +++  LE K+                       E +  IE  +  L + K KL+A+EE
Sbjct: 894 LEAQLRELERKI----------------------EELEAQIEKKRKRLSELKAKLEALEE 931

Query: 581 LKSQSGDTGKLVDSYISGKITQLKEQIATLEKREER 616
             S+  D     D  I  +   L++  A L++ EE 
Sbjct: 932 ELSEIEDPKG-EDEEIPEEELSLEDVQAELQRVEEE 966

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton]

 Score = 50.5 bits (121), Expect = 3e-06
 Identities = 62/403 (15%), Positives = 140/403 (34%), Gaps = 39/403 (9%)

Query: 139  LKKQIQLCSELEAK--HRNELNLRRKAESAAASAEEKASLLEGKLTHLSDSIEREKKRLN 196
            +K++ +L    E +   + E+ +++   S    A+++ SLL+ +  +L  +   E     
Sbjct: 826  IKREKKLRETEEVEFSLKAEVLIQKFGRSL--KAKKRFSLLKKETIYLQSAQRVELAERQ 883

Query: 197  NEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVE 256
             +  ++  +S SS+  +  +LE      + +     +   + K       + L    ++E
Sbjct: 884  LQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLIENLEFKTELIARLKKLLNNIDLE 943

Query: 257  KKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREARKLKASYENTELLKEKLLEEKSR 316
            +  S     E+        +  L E     +     + + +   + + +L  +  +  S 
Sbjct: 944  EGPS----IEYVKLPE---LNKLHEVESKLK---ETSEEYEDLLKKSTILVREGNKANSE 993

Query: 317  RERVEQELAKLRE----VQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQKEVI 372
             +  ++ELA+L +    +Q+S  QL++       L      +S           LQK   
Sbjct: 994  LKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKIISSESTELSILKPLQKLKG 1053

Query: 373  DSMMKLGEANAQLKQMEVALDAAQL-GKQSAETEAALVKEKE-EVSKSEVKRIESMLS-- 428
              +++  +  A+ K +++  + + L  KQ  + E+     K   V   EV     +    
Sbjct: 1054 LLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPAN 1113

Query: 429  -------------VVTEERDKLRNVVNEFKKPKNDGGGDE-RANLTLTKELESSLAKKEE 474
                         ++ E    L  +VN  +         +   +    +    +L     
Sbjct: 1114 VLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPP 1173

Query: 475  FIEELESNL---HAQQEINSRQRDEIKSLSEKLNNEERRIKSL 514
            F    E  L       E +     E+  L  +L     +I S 
Sbjct: 1174 FAALSEKRLYQSALYDEKSKLSSSEVNDLKNELIALFSKIFSG 1216

Length = 1463

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 49.7 bits (119), Expect = 5e-06
 Identities = 80/331 (24%), Positives = 148/331 (44%), Gaps = 22/331 (6%)

Query: 290 VREARKLKASYENTELLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIR 349
            R  R   A     + L+E+L E +++ E++E+EL  L+   +S++ L +EL      + 
Sbjct: 656 SRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELE 715

Query: 350 DIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALV 409
                   E++  + AAL++E+     +L E   +L+++E  L+  Q   +  E E   +
Sbjct: 716 RQ-----LEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESL 770

Query: 410 KEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSL 469
           +E     K E++ +E     + EE ++L   + E ++  +    +  +     + LE  +
Sbjct: 771 EEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEI 830

Query: 470 AKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLE 529
            + EE IEELE  L   +E       E++ L E+L   E   + LE E   L  E   LE
Sbjct: 831 EELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELE 890

Query: 530 SKLGHGDFSSENTKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQAVEELKSQSGDTG 589
            +             LR + +     E K+ IE L+  L++ + KL+ +E    +  +  
Sbjct: 891 EE-------------LRELESELA--ELKEEIEKLRERLEELEAKLERLEVELPELEE-- 933

Query: 590 KLVDSYISGKITQLKEQIATLEKREERYKTV 620
           +L + Y     T+L+ +I  LE+  E    V
Sbjct: 934 ELEEEYEDTLETELEREIERLEEEIEALGPV 964

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 48.9 bits (117), Expect = 9e-06
 Identities = 107/519 (20%), Positives = 219/519 (42%), Gaps = 69/519 (13%)

Query: 131 EVDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLSDSIER 190
           E D+SRE++ +QI    + E  ++N   + ++ +      E     ++       ++IE 
Sbjct: 142 ESDESREKVVRQILGLDDYENAYKNLGEVIKEIK---RRIERLEKFIKRT-----ENIEE 193

Query: 191 EKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLN 250
             K    E+ ++ RE    I+ I ++L ++    +  EKE +    ++++LKE++ E   
Sbjct: 194 LIKEKEKELEEVLRE----INEISSELPELREELEKLEKEVK----ELEELKEEIEELEK 245

Query: 251 QKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREARKLKASYENTELLKEKL 310
           +   +E        +     +    ++ L++EI   E +V+E ++LK   E    L E  
Sbjct: 246 ELESLEGSKRKLEEKIRELEER---IEELKKEIEELEEKVKELKELKEKAEEYIKLSEFY 302

Query: 311 LEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQKE 370
            E       +E+ L++L E    +++   EL   +  + ++      +++  +   L++ 
Sbjct: 303 EEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKK--LKELEKRLEELEER 360

Query: 371 VIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKRIESMLSVV 430
             +   +      +L++++  L      K   E E  L K KEE+ + E+ +I + +  +
Sbjct: 361 H-ELYEEAKAKKEELERLKKRLTGLTPEKLEKELE-ELEKAKEEIEE-EISKITARIGEL 417

Query: 431 TEERDKLRNVVNEFKKPKN-------DGGGDERANL--TLTKELESSLAKKEEFIE---- 477
            +E  +L+  + E KK K        +   + R  L    T EL+    + +E  E    
Sbjct: 418 KKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERK 477

Query: 478 ------ELESNLHAQQEINSRQR--DEIKSLSEKLNN--------EERRIKSLERENDRL 521
                 ELE  L  + E+   +   +++K L EKL          +    + L+ +  +L
Sbjct: 478 LRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKL 537

Query: 522 RSEISLLESKLGHGDFSSENTKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKL--QAVE 579
           + EI  L+ +L          K+  +   LA   +    +E    EL K  E+L  ++VE
Sbjct: 538 KGEIKSLKKEL---------EKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVE 588

Query: 580 ELKSQSGDTGKLVDSYISGKITQLKEQIATLEKREERYK 618
           EL+ +  +     + Y+      LK+    LE+ E+  K
Sbjct: 589 ELEERLKELEPFYNEYLE-----LKDAEKELEREEKELK 622

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 48.9 bits (117), Expect = 1e-05
 Identities = 69/383 (18%), Positives = 150/383 (39%), Gaps = 37/383 (9%)

Query: 65  KSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAER-KKFRDQFLYAEQELAAAKGREGV 123
           K   L+ L  VE+ +      ++E  +   +   ER K  R Q L  E+        EG 
Sbjct: 172 KEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKR-----EYEGY 226

Query: 124 LQEQLLKEVDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTH 183
              +  + ++  +E +++Q+                        AS EE+   L  +++ 
Sbjct: 227 ELLKEKEALERQKEAIERQL------------------------ASLEEELEKLTEEISE 262

Query: 184 LSDSIEREKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKE 243
           L   +E  ++ L     ++K   +    R+   + ++E    + E+     + +++D +E
Sbjct: 263 LEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEE 322

Query: 244 QLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREARKLKASYENT 303
           +L      ++E++K L+     E    +       L EE    + E+ + R      +  
Sbjct: 323 RLA---KLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKE 379

Query: 304 ELLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVK 363
               E   E K  RE++E+   ++ E+++ +D+L++EL      + D+   +    I  K
Sbjct: 380 --FAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLN--AAIAGIEAK 435

Query: 364 FAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKRI 423
              L++E  D  +++ +   +L+Q+   L   +      + E   V+++    + E+   
Sbjct: 436 INELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEA 495

Query: 424 ESMLSVVTEERDKLRNVVNEFKK 446
           E+      E     R V    K 
Sbjct: 496 EAQARASEERVRGGRAVEEVLKA 518

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 47.7 bits (114), Expect = 2e-05
 Identities = 60/319 (18%), Positives = 134/319 (42%), Gaps = 35/319 (10%)

Query: 308 EKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKFAAL 367
           E+  E K+    +E  L  LR     +++L +EL   +  +         ++   +   L
Sbjct: 213 ERYKELKAELRELELALLVLR-----LEELREELEELQEEL---------KEAEEELEEL 258

Query: 368 QKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKRIESML 427
             E+ +   KL E   ++ ++E  ++  Q    +   E + +++++++ +  +  +E  L
Sbjct: 259 TAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQL 318

Query: 428 SVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEFIEELESNLHAQQ 487
             +  + ++L + ++E  +   +            + LE+ L + E  +EELES L   +
Sbjct: 319 EELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELE 378

Query: 488 EINSRQRDE-------IKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLGHGDFSSE 540
           E     R +       I SL+ ++   E R++ LE   +RL+ EI  L  KL   +    
Sbjct: 379 EQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKEL 438

Query: 541 NTKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQAVEELKSQSGDTGKLVDSYISGKI 600
             ++              + +E    ELQ+  E+L+   E   +  +  +        ++
Sbjct: 439 QAEL--------------EELEEELEELQEELERLEEALEELREELEEAEQALDAAEREL 484

Query: 601 TQLKEQIATLEKREERYKT 619
            QL+ ++ +LE+ +E  + 
Sbjct: 485 AQLQARLDSLERLQENLEG 503

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 12/164 (7%)

Query: 468 SLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISL 527
           S  K+EE   E E     ++   +     IK L E +   E     L+RE + L+ EI  
Sbjct: 395 SKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEK 454

Query: 528 LESKLGHGDFSSENTKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQAVEELKSQSGD 587
           LES+L          KV +     A D      IE L+ EL++ K++   VEEL+ +  +
Sbjct: 455 LESELERFR-REVRDKVRKDREIRARDRR----IERLEKELEEKKKR---VEELERKLAE 506

Query: 588 TGKLVDSYISGKITQLKE----QIATLEKREERYKTVFADRISV 627
             K+    +SGK T +K      +  +E+ EE Y     D I V
Sbjct: 507 LRKMRKLELSGKGTPVKVVEKLTLEAIEEAEEEYGIKEGDVILV 550

Length = 652

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 46.6 bits (111), Expect = 4e-05
 Identities = 114/543 (20%), Positives = 208/543 (38%), Gaps = 59/543 (10%)

Query: 59  QCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAK 118
           Q  +  + D  + L  +E ++ +   ++E   E   +A   R +       A++ L   +
Sbjct: 195 QIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDE-------ADEVLEEHE 247

Query: 119 GREGVLQEQLLKEVDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLE 178
            R   L+  L  E++D RE           +    R    L  +        EE    LE
Sbjct: 248 ERREELET-LEAEIEDLRE----------TIAETEREREELAEEVRDLRERLEE----LE 292

Query: 179 GKLTHLSDSIEREKKRLNNEVTQLKRESKSS-ISRIGADLEKMECRAQNAEKESEMLKNQ 237
            +   L      +    + E  + +RE        +   LE+    AQ   +E+E L+  
Sbjct: 293 EERDDLLAEAGLD--DADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLRED 350

Query: 238 MKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREARKLK 297
             DL+E+  E   + +E+E +L  +     +  D    ++ L+EEI        +A    
Sbjct: 351 ADDLEERAEELREEAAELESELEEA---REAVEDRREEIEELEEEIEELRERFGDA---P 404

Query: 298 ASYENTELLKEKLLEEKSR-RERVEQELAKLREVQQSMDQLEDELSSWKFL-----IRDI 351
               N E   E+L EE+   RER  +  A LR  ++ +++ E  L + K       +   
Sbjct: 405 VDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGS 464

Query: 352 PGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAA---QLGKQSAETEAAL 408
           P V   E+   +   L+ E+ D   ++ E   +L++ E  ++A    +  ++  E    L
Sbjct: 465 PHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEEL 524

Query: 409 VKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESS 468
           + E+ E  + + +R E +     E   +L     E ++   +   +         EL S 
Sbjct: 525 IAERRETIEEKRERAEEL----RERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSK 580

Query: 469 LAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLN-----NEERRIKSLERENDRLRS 523
           LA+ +E IE LE  +       +   DEI+ L EK       N+ERR +  E+     R 
Sbjct: 581 LAELKERIESLE-RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEK-----RE 634

Query: 524 EISLLESKLGHGDFSSENTKVLRMVNTLAVDNEAKQTIEALQTELQKT----KEKLQAVE 579
               LE++              R    L    E    +   + +LQ      + +L+ +E
Sbjct: 635 RKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELE 694

Query: 580 ELK 582
           EL+
Sbjct: 695 ELR 697

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 46.6 bits (111), Expect = 5e-05
 Identities = 71/402 (17%), Positives = 146/402 (36%), Gaps = 66/402 (16%)

Query: 125  QEQLLKEVDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHL 184
             E+ + E++ +   L+K+++   E   + R EL    +  SA      +      +L   
Sbjct: 689  LEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEER 748

Query: 185  SDSIEREKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQ 244
               + +E   L  E+ +L+             LE+ E     AE E E L+ Q++ LKE+
Sbjct: 749  IAQLSKELTELEAEIEELE-----------ERLEEAEEELAEAEAEIEELEAQIEQLKEE 797

Query: 245  LNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREARKLKASYENTE 304
            L        E+  +L          T  N    +L+E + + E  +    +     E+ E
Sbjct: 798  LKALREALDELRAEL----------TLLNEEAANLRERLESLERRIAATER---RLEDLE 844

Query: 305  LLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKF 364
               E+L E+    E +  E+ +L E    +++LE EL +                +    
Sbjct: 845  EQIEELSED---IESLAAEIEELEE---LIEELESELEALLNER---------ASLEEAL 889

Query: 365  AALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKRIE 424
            A L+ E+ +   +L E  ++  ++   L+  +        + A ++ + E  +  +  ++
Sbjct: 890  ALLRSELEELSEELRELESKRSELRRELEELR-------EKLAQLELRLEGLEVRIDNLQ 942

Query: 425  SMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEFIEELESNLH 484
              LS   E    L                       L  ++E    +    ++ LE+ + 
Sbjct: 943  ERLSE--EYSLTLEEA------------------EALENKIEDDEEEARRRLKRLENKIK 982

Query: 485  AQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEIS 526
                +N    +E + L E+ +    + + L    + L   I 
Sbjct: 983  ELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIE 1024

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 46.2 bits (110), Expect = 6e-05
 Identities = 54/282 (19%), Positives = 121/282 (42%), Gaps = 17/282 (6%)

Query: 70   DALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQLL 129
              LT +E ++ + + +LEE  E  ++AEAE ++   Q    ++EL A +     L+ +L 
Sbjct: 754  KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT 813

Query: 130  KEVDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLSDSIE 189
               +++    ++   L   + A  R   +L  + E  +   E  A+ +E +L  L + +E
Sbjct: 814  LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE-ELEELIEELE 872

Query: 190  REKKRLNNEVTQLKRESKSSISRIG---ADLEKMECRAQNAEKESEMLKNQMKDLKEQLN 246
             E + L NE   L+       S +     +L ++E +     +E E L+ ++  L+ +L 
Sbjct: 873  SELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLE 932

Query: 247  ECLNQKSEVEKKLSSS---TFQEFSTTDSNILVKHLQEEIRNYEAEVREARKLKASYENT 303
                +   ++++LS     T +E        L   ++++       ++            
Sbjct: 933  GLEVRIDNLQERLSEEYSLTLEEAEA-----LENKIEDDEEEARRRLKRLENKIKELGPV 987

Query: 304  ELLK-EKLLEEKSRRERVEQELAKLRE----VQQSMDQLEDE 340
             L   E+  E K R + +  +   L E    +++++++++ E
Sbjct: 988  NLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDRE 1029

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 45.7 bits (108), Expect = 8e-05
 Identities = 58/375 (15%), Positives = 132/375 (35%), Gaps = 16/375 (4%)

Query: 115 AAAKGREGVLQEQLLKEVDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKA 174
            AA  RE   +++ LK++ +  E L + I    EL+ +        +KA       E+  
Sbjct: 162 EAAGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLE 221

Query: 175 SLLEGKLTHLSDSIEREKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEML 234
              E  L      +  E+  L  E+ + ++E   S  +     E++  +     KE E  
Sbjct: 222 LEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKE 281

Query: 235 KNQMKDLKEQL-NECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREA 293
           K   ++  + L  E    KSE+ K        E    +S   +K L++E++  + E+ E 
Sbjct: 282 KKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEEL 341

Query: 294 RKLKASYENTELLKEKLLEEKSRR----ERVEQELAKLREVQQSMDQLEDELSSWKFLIR 349
            K     E     +E+  E+  +     E++E+EL   ++++        +L   +  ++
Sbjct: 342 EKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELK 401

Query: 350 DIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALV 409
           +            +    +  +  S  +      + K+    ++  +   ++ + +    
Sbjct: 402 NE-----------EEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEE 450

Query: 410 KEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSL 469
           KE+ E    ++ + +  L    +   + + V    +                  +    L
Sbjct: 451 KEELEKQALKLLKDKLELKKSEDLLKETKLVKLLEQLELLLLRQKLEEASQKESKAREGL 510

Query: 470 AKKEEFIEELESNLH 484
           A     I++      
Sbjct: 511 AVLLALIKDGVGLRI 525

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional

 Score = 45.4 bits (108), Expect = 8e-05
 Identities = 35/211 (16%), Positives = 87/211 (41%), Gaps = 24/211 (11%)

Query: 72  LTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQLL-- 129
           + ++++Q++ Y   +EE  +   +  A ++   D+ +   + + A       L ++LL  
Sbjct: 190 IDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEE---LTDELLNL 246

Query: 130 -KEVDDSRERLKKQIQLCSELEAKHRN---ELNLRRK-------------AESAAASAEE 172
             +++D    L K     +++++K       + +  K                     ++
Sbjct: 247 VMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKD 306

Query: 173 KASLLEGKLTHLSDSIEREKKRLN--NEVTQLKRESKSSISRIGADLEKMECRAQNAEKE 230
           K   L+  L  L  +I+  ++ ++  NE ++   E K+ IS     L  +  +A+  +  
Sbjct: 307 KLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAA 366

Query: 231 SEMLKNQMKDLKEQLNECLNQKSEVEKKLSS 261
            E L+ +  D  E+L +  ++  ++ K  S 
Sbjct: 367 IEELQAEFVDNAEELAKLQDELDKIVKTKSE 397

Length = 562

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 45.9 bits (108), Expect = 9e-05
 Identities = 102/534 (19%), Positives = 216/534 (40%), Gaps = 29/534 (5%)

Query: 91   ENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQLLKEVDDSRERLKKQIQLCSELE 150
            E   KAE ER     +     +    A+ +  +  E+  K  +  +   KK+     + E
Sbjct: 1240 EEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAE 1299

Query: 151  AKHRNELNLRRKAESAAASAEEKASLLEGKLTHLSDSIEREKKRLNNEVTQLKRESKSSI 210
             K + +   ++KAE A  + E K    E K    +   + E+ +   E  + + E+ +  
Sbjct: 1300 EKKKAD-EAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAAD- 1357

Query: 211  SRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTT 270
                 + E  E +A+ AEK+ E  K +    K++  E   +K++  KK +    ++    
Sbjct: 1358 -----EAEAAEEKAEAAEKKKEEAKKKADAAKKKAEE--KKKADEAKKKAEEDKKKADEL 1410

Query: 271  DSNILVKHLQEEIRNYEAEVREARKLKASYENTELLKE--KLLEEKSRRERVEQELAKLR 328
                  K   +E +    E ++A + K   E  +   E  K  EE  + E  +++  + +
Sbjct: 1411 KKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK 1470

Query: 329  EVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANA--QLK 386
            +  ++  + E+   + +   +       +++   K AA  K+  D   K  EA    + K
Sbjct: 1471 KADEAKKKAEEAKKADEAKKKAEEAKKKADEA--KKAAEAKKKADEAKKAEEAKKADEAK 1528

Query: 387  QMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKK 446
            + E A  A +  K   + +A  +K+ EE+ K+E K+         E+++       E KK
Sbjct: 1529 KAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKK 1588

Query: 447  PKNDGGGDERANLTLTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNN 506
             +     +        K++++  AKK E  +     L   +E     + +++ L +K   
Sbjct: 1589 AEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEE----KKKVEQLKKKEAE 1644

Query: 507  EERRIKSLERENDRLRSEISLLESKLGHGDFSSENTKVLRMVNTLAVDNEAKQTIEALQT 566
            E+++ + L++  +  + + +    K       +E  K          + + K+  EAL+ 
Sbjct: 1645 EKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAK--------KAEEDEKKAAEALKK 1696

Query: 567  ELQKTK--EKLQAVEELKSQSGDTGKLVDSYISGKITQLKEQIATLEKREERYK 618
            E ++ K  E+L+  E  + +  +  K  +     K  + K++    +K+ E  K
Sbjct: 1697 EAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK 1750

Length = 2084

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 45.0 bits (107), Expect = 1e-04
 Identities = 49/259 (18%), Positives = 103/259 (39%), Gaps = 15/259 (5%)

Query: 72  LTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQLLKE 131
           L  +E +V   + ++ +L++  ++ EAE ++  ++   AE+ELA A+       E+L  +
Sbjct: 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE----IEELEAQ 790

Query: 132 VDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLSDSIERE 191
           ++  +E LK   +   EL A+                S E + +  E +L  L + IE  
Sbjct: 791 IEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEEL 850

Query: 192 KKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQ 251
            + +            + I  +   +E++E   +    E   L+  +  L+ +L E   +
Sbjct: 851 SEDI--------ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEE 902

Query: 252 KSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREARKLKASYENT-ELLKEKL 310
             E+E K S    +     +    ++   E +      ++E  +L   Y  T E  +   
Sbjct: 903 LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE--RLSEEYSLTLEEAEALE 960

Query: 311 LEEKSRRERVEQELAKLRE 329
            + +   E   + L +L  
Sbjct: 961 NKIEDDEEEARRRLKRLEN 979

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 41/195 (21%), Positives = 94/195 (48%), Gaps = 1/195 (0%)

Query: 67  DFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQE 126
           +  + +  +E ++   + +LEEL     + E   ++ +++    ++EL   +     L++
Sbjct: 292 ELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQ 351

Query: 127 QLLKEVDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLSD 186
            L +  +   E  +K   L  ELE           + E+  A    +   L+ ++  L +
Sbjct: 352 LLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEE 411

Query: 187 SIEREKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLN 246
            +ER  +RL +   +LK E ++ +  +  +LE++    +  E++ E L++++K+L+ +L 
Sbjct: 412 RLERLSERLEDLKEELK-ELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELA 470

Query: 247 ECLNQKSEVEKKLSS 261
           E   +   +EK+LSS
Sbjct: 471 ELQEELQRLEKELSS 485

Length = 1163

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 100/496 (20%), Positives = 215/496 (43%), Gaps = 63/496 (12%)

Query: 74  NVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQLLKEVD 133
           N++ Q+R  +  L+ L E   +    + +   Q   A  E+   + +         +E++
Sbjct: 261 NLQAQLRQLEHDLDSLREQLEEESEAKAELERQLSKANAEIQQWRSKFESEGALRAEELE 320

Query: 134 DSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLSDSIE---R 190
           + +++L ++I                  + E AA +A  K   LE   + L   +E    
Sbjct: 321 ELKKKLNQKIS-----------------ELEEAAEAANAKCDSLEKTKSRLQSELEDLQI 363

Query: 191 EKKRLNNEVTQLKR----------ESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKD 240
           E +R N   ++L++          E K  +  + A+L+  +  A+N   E   LKN++++
Sbjct: 364 ELERANAAASELEKKQKNFDKILAEWKRKVDELQAELDTAQREARNLSTELFRLKNELEE 423

Query: 241 LKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREARKLKASY 300
           LK+Q+     +   ++ ++   T Q     +    V  L++  R  EAE  E   L+A+ 
Sbjct: 424 LKDQVEALRRENKNLQDEIHDLTDQ---LGEGGRNVHELEKARRRLEAEKDE---LQAAL 477

Query: 301 ENTELLKEKLLEEKSRRERVEQELAKLR-EVQQSMDQLEDEL-SSWKFLIRDIPGVSCSE 358
           E  E     L  E+S+  R + EL+++R E+++ + + E+E  ++ K   R I  +  + 
Sbjct: 478 EEAE---AALELEESKVLRAQVELSQIRSEIERRLAEKEEEFENTRKNHQRAIESLQATL 534

Query: 359 DIPVKFAA--------LQKEVIDSMMKLGEAN--------------AQLKQMEVALDAAQ 396
           +   K  A        L+ ++ +  + L  AN               Q+K+++  ++  Q
Sbjct: 535 EAEAKGKAEASRLKKKLEGDINELEIALDHANKANAEAQKNVKKYQQQVKELQTQVEEEQ 594

Query: 397 LGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDER 456
             ++ A  + A+ + +    ++E++ + S L      R +    + E  +  N+      
Sbjct: 595 RAREDAREQLAVAERRATALEAELEELRSALEQAERARKQAETELAEASERVNELTAQNS 654

Query: 457 ANLTLTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLER 516
           + +   ++LE  LA  +  ++E  + L A +E   + + +   L+E+L  E+   + LER
Sbjct: 655 SLIAQKRKLEGELAALQSDLDEAVNELKAAEERAKKAQADAARLAEELRQEQEHSQHLER 714

Query: 517 ENDRLRSEISLLESKL 532
              +L S++  L+ +L
Sbjct: 715 LRKQLESQVKELQVRL 730

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 44.3 bits (105), Expect = 3e-04
 Identities = 48/225 (21%), Positives = 96/225 (42%), Gaps = 30/225 (13%)

Query: 417 KSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEFI 476
           +SE++RIE+ L  +++E       + E +K       +E       +ELE  L+  E+ I
Sbjct: 694 QSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEI 753

Query: 477 EELESNLHAQQEINSRQRDEIKSLSEKLNNEERRI------------KSLERENDRLRSE 524
           E ++S L   +       +++  L E LN+ E R+              LE E  R+ + 
Sbjct: 754 ENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEAR 813

Query: 525 ISLLESKLGHGDFSSE------NTKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQ-- 576
           +  +E KL       E           + ++        ++ IE L  + ++ +E+L+  
Sbjct: 814 LREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEEL 873

Query: 577 --AVEELKSQSGDTGKLVDSYISGKITQLKEQIATLEKREERYKT 619
             A+ +L+S+ GD        +  +  +L+ Q+  LE++ E  + 
Sbjct: 874 EAALRDLESRLGD--------LKKERDELEAQLRELERKIEELEA 910

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 95/497 (19%), Positives = 194/497 (39%), Gaps = 63/497 (12%)

Query: 116 AAKGREGVLQEQLLKEVDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKAS 175
           A+  R GV  E++L +   S ++LK QI      E K   +L+            E + +
Sbjct: 171 ASDARLGV--ERVLSDQRGSLDQLKAQI------EEKEEKDLH------ERLNGLESELA 216

Query: 176 LLEGKLTHLSDSIEREKKRLNN--EVTQLKRESKSSISRIGADLEKMECRAQNAEKESEM 233
            L+ ++    +  E+ ++  +   EV +   E +  +  + A++E +       E+E E 
Sbjct: 217 ELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREE 276

Query: 234 LKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREA 293
           L  +++DL+E+L E      E +  L+ +   +          + L++        + E 
Sbjct: 277 LAEEVRDLRERLEELE---EERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEEC 333

Query: 294 R-KLKASYENTELLKEKLLEEKSRRERVEQELAKL-REVQQSMDQLEDELSSWKFLIRDI 351
           R   +A  E  E L+E   + + R E + +E A+L  E++++ + +ED     + L  +I
Sbjct: 334 RVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEI 393

Query: 352 PGVSCS-EDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAAL-- 408
             +     D PV     +  + +   +  E   +  ++E  L  A+  ++  E EA L  
Sbjct: 394 EELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTAR--ERVEEAEALLEA 451

Query: 409 ---------VKEKEEVSKSEVKR-----IESMLSVVTEERDKLRNVVNEFKKPKNDGGGD 454
                    V+    V   E  R     +E+ L  + EE +++   +   +         
Sbjct: 452 GKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVE----- 506

Query: 455 ERANLTLTKELESSLAKKE---EFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRI 511
                     +E    ++E   E I E    +  ++E     R+    L  +   +    
Sbjct: 507 ------AEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAA 560

Query: 512 KSLERENDRLRSEISLLESKLGHGDFSSENTKVLRMVNTLAVDNEAKQTIEALQTELQKT 571
              E E +  R E++ L SKL       E  + +  +  +     A   I   + E+++ 
Sbjct: 561 AEAEEEAEEAREEVAELNSKLA------ELKERIESLERIRTLLAA---IADAEDEIERL 611

Query: 572 KEKLQAVEELKSQSGDT 588
           +EK +A+ EL  +  + 
Sbjct: 612 REKREALAELNDERRER 628

Length = 880

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 43.5 bits (103), Expect = 4e-04
 Identities = 103/547 (18%), Positives = 208/547 (38%), Gaps = 95/547 (17%)

Query: 64  VKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGV 123
           V SD   +L  ++ Q+ + + K  +L+E  +  E+E  +  ++    E++   A+     
Sbjct: 181 VLSDQRGSLDQLKAQIEEKEEK--DLHERLNGLESELAELDEEIERYEEQREQARETRDE 238

Query: 124 LQEQLLKEVDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTH 183
             E +L+E ++ RE L+       +L          R +         E+   LE +   
Sbjct: 239 ADE-VLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDD 297

Query: 184 LSDSIEREKKRLNNEVTQLKRESKSS-ISRIGADLEKMECRAQNAEKESEMLKNQMKDLK 242
           L      +    + E  + +RE        +   LE+    AQ   +E+E L+    DL+
Sbjct: 298 LLAEAGLD--DADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLE 355

Query: 243 EQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREARKLKASYEN 302
           E+  E   + +E+E +L  +     +  D    ++ L+EEI        +A        N
Sbjct: 356 ERAEELREEAAELESELEEA---REAVEDRREEIEELEEEIEELRERFGDA---PVDLGN 409

Query: 303 TELLKEKLLEEKSR-RERVEQELAKLREVQQSMDQLEDELSSWKFL-----IRDIPGVSC 356
            E   E+L EE+   RER  +  A LR  ++ +++ E  L + K       +   P V  
Sbjct: 410 AEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVET 469

Query: 357 SEDIPVKFAALQKEV-------------IDSMMKLGEANAQLKQM--------------- 388
            E+   +   L+ E+             ++    L EA  +++++               
Sbjct: 470 IEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERR 529

Query: 389 ----EVALDAAQLGKQSAETEAALVKEKEEVSK---------SEVKRIESMLSVVTEERD 435
               E    A +L +++AE EA   +++E  ++          EV  + S L+ + E  +
Sbjct: 530 ETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIE 589

Query: 436 KLRNVV----------------NEFKKPKNDGGGDERANLTLTKELESSLAKK------- 472
            L  +                  E ++   +   + R  L   +E +  L  +       
Sbjct: 590 SLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIE 649

Query: 473 ---------EEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRS 523
                    EE++E++E  L   +E    +RD++++    + NE   ++ L    + L +
Sbjct: 650 EAREDKERAEEYLEQVEEKLDELRE----ERDDLQAEIGAVENELEELEELRERREALEN 705

Query: 524 EISLLES 530
            +  LE+
Sbjct: 706 RVEALEA 712

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.1 bits (102), Expect = 5e-04
 Identities = 73/407 (17%), Positives = 163/407 (40%), Gaps = 63/407 (15%)

Query: 230  ESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAE 289
            E + L+ +++ LK +L+   ++   +E        QE S     I     + E    E E
Sbjct: 675  ELQRLRERLEGLKRELSSLQSELRRIEN-RLDELSQELSDASRKIGEIEKEIEQLEQEEE 733

Query: 290  VREARKLKASYENTELLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIR 349
             +   +L+   E+   L++++   KS  + +E  + +L E    + +LE+ L+     + 
Sbjct: 734  -KLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEED---LHKLEEALND----LE 785

Query: 350  DIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALV 409
                 S   +I  + + L++EV     +L E   +L ++ +  +  +   Q  + +   +
Sbjct: 786  ARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDL 845

Query: 410  KEKEEVSKSEV----KRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKEL 465
            KE+ +  + E+     + E +   + E    LR                         +L
Sbjct: 846  KEQIKSIEKEIENLNGKKEELEEELEELEAALR-------------------------DL 880

Query: 466  ESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEI 525
            ES L   ++  +ELE+ L   +        +I+ L  ++  + +R+  L+ + + L  E+
Sbjct: 881  ESRLGDLKKERDELEAQLRELE-------RKIEELEAQIEKKRKRLSELKAKLEALEEEL 933

Query: 526  SLLESKLGHGDFSSENTKVLRMVNTLAVDNEAKQTIEALQTELQKTKE-KLQAVEELKSQ 584
            S +E   G  +   E    L  V         +  ++ ++ E++  +   + A++E +  
Sbjct: 934  SEIEDPKGEDEEIPEEELSLEDV---------QAELQRVEEEIRALEPVNMLAIQEYEEV 984

Query: 585  SGDTGKLVDSYISGKITQLKEQIATLEKREERYKTVFADRISVFRRA 631
                 +L +     K  +L+E+   + +R E Y+     +  VF  A
Sbjct: 985  LKRLDELKE-----KRAKLEEERKAILERIEEYEKK---KREVFMEA 1023

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton]

 Score = 43.5 bits (103), Expect = 5e-04
 Identities = 100/601 (16%), Positives = 219/601 (36%), Gaps = 82/601 (13%)

Query: 76   EKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQLLKEVDDS 135
            E+     ++  E L + F ++   +K+F    L  ++ +     +   L E+ L+E+   
Sbjct: 836  EEVEFSLKA--EVLIQKFGRSLKAKKRF---SLLKKETIYLQSAQRVELAERQLQELKID 890

Query: 136  RERLKKQIQLCSELEAKH---RNEL--NLRRKAESAAASAEEKASLLEGKLTHLSDSIER 190
             + +     +  ELE++    +  L  +L    E           LL         SIE 
Sbjct: 891  VKSISSLKLVNLELESEIIELKKSLSSDLIENLEFKTELIARLKKLLNNIDLEEGPSIEY 950

Query: 191  EKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECL- 249
             K    N++ +++ + K +       L+K     +   K +  LKN  K+L E   +   
Sbjct: 951  VKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGA 1010

Query: 250  --NQKSEVEKK------LSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREARKLKASYE 301
                  ++++       L S++    S +    ++K LQ+       E  +   L+A Y+
Sbjct: 1011 LQESTKQLKELPVEVAELQSASKIISSESTELSILKPLQKLKGLLLLENNQ---LQARYK 1067

Query: 302  NTELLKEKLLEEKSRRERVEQELAKLREVQQSMDQL-EDELSSWKFLIRDIPGVSCSEDI 360
              +L +E  L +  +  ++E     L+ +     ++    L     +++ I       ++
Sbjct: 1068 ALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQFIVAQMIKLNL 1127

Query: 361  PVKFAALQKEVIDSM----MKLGEANAQLKQMEVALDAAQLG--------KQSAETEAAL 408
              + +    ++++++     KL     +L  +    +   L          +    ++AL
Sbjct: 1128 LQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFAALSEKRLYQSAL 1187

Query: 409  VKEKEEVSKSEVKRIESMLS------------------------VVTEERDKLRNVVNEF 444
              EK ++S SEV  +++ L                         V TE    L+   N  
Sbjct: 1188 YDEKSKLSSSEVNDLKNELIALFSKIFSGWPRGDKLKKLISEGWVPTEYSTSLKGFNNLN 1247

Query: 445  KKPKNDGGGDERANLTLTKELESSLAKKEEFIEELESNLHAQ-QEINSRQRDEI------ 497
            KK            L+L   +++ L+  +   E L + +++  Q IN    + +      
Sbjct: 1248 KKFDTPASMSNEKLLSLLNSIDNLLSSYKLEEEVLPATINSLLQYINVGLFNALRTKASS 1307

Query: 498  ---KSLSE-KLNNEERRIKSLERENDRLRSEISLLESKLGHGDFSSENTKVLRMVNTLAV 553
               KS +E   N+EE      E E   +  E+  L           +  KVL+++     
Sbjct: 1308 LRWKSATEVNYNSEELDDWCREFEISDVDEELEELI----------QAVKVLQLLKDDL- 1356

Query: 554  DNEAKQTIEALQTELQKTKEKLQAVEELKSQSGDTGKLVDSYISGKITQLKEQIATLEKR 613
             N+  + ++A  +      + L++  +   +  +  K +   I   + + + Q++   K 
Sbjct: 1357 -NKLDELLDACYSLNPAEIQNLKSRYDPADKENNLPKEILKKIEALLIKQELQLSLEGKD 1415

Query: 614  E 614
            E
Sbjct: 1416 E 1416

Length = 1463

>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family

 Score = 42.8 bits (101), Expect = 6e-04
 Identities = 53/229 (23%), Positives = 100/229 (43%), Gaps = 34/229 (14%)

Query: 279 LQEEIRNYEAEVREARKLKASYENTELLKEKLLEEKSRRERVEQELAKLREVQQSMDQLE 338
           L+EEI + EAE++E        EN E L++++ E       +E+ L  L E +  +D+  
Sbjct: 72  LEEEILDLEAEIKEVE------ENLESLEKEINE-------LEEWLNVLDEEKSFLDENL 118

Query: 339 DELSSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLG 398
           +ELS    L  D   +  +E + + F A    VI+   KL     +L        A +  
Sbjct: 119 EELSELSNLDIDFKYLRGAEGLKLGFVA---GVINR-EKLEAFEREL------WRACRGY 168

Query: 399 KQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERAN 458
            + AE         EE  +   K +  +  V  E+ DK++ +++ F     D    E   
Sbjct: 169 IRQAEI--------EEPLEDPKKTVFIIFFVGKEDLDKVKKILDSFGFELYDVPETEGER 220

Query: 459 LTLTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNE 507
             L  ++   + + +  +E+ ES+L    ++  +  DE+ +  E+++ E
Sbjct: 221 SELISKVNKRIEELQRVLEQTESHLE---KVLVKIADELLAWDEQVSKE 266

This family consists of the 116kDa V-type ATPase (vacuolar (H+)-ATPases) subunits, as well as V-type ATP synthase subunit i. The V-type ATPases family are proton pumps that acidify intracellular compartments in eukaryotic cells for example yeast central vacuoles, clathrin-coated and synaptic vesicles. They have important roles in membrane trafficking processes. The 116kDa subunit (subunit a) in the V-type ATPase is part of the V0 functional domain responsible for proton transport. The a subunit is a transmembrane glycoprotein with multiple putative transmembrane helices it has a hydrophilic amino terminal and a hydrophobic carboxy terminal. It has roles in proton transport and assembly of the V-type ATPase complex. This subunit is encoded by two homologous gene in yeast VPH1 and STV1. Length = 707

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 42.7 bits (101), Expect = 7e-04
 Identities = 41/304 (13%), Positives = 102/304 (33%), Gaps = 19/304 (6%)

Query: 239  KDLKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREARKLKA 298
            K+  E+LN  L +K +  +KL ++T ++    D +   + L+E+    E E+ + ++LK 
Sbjct: 1101 KEKVEKLNAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQRLK- 1159

Query: 299  SYENTELLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGVSCSE 358
                    K K    K R+ +++++  K ++         D+      +       S  +
Sbjct: 1160 -------SKTKGKASKLRKPKLKKKEKKKKK------SSADKSKKASVVGNSKRVDSDEK 1206

Query: 359  DIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEE-VSK 417
                     +K       +  +   + K  + ++   +  K ++   +    E       
Sbjct: 1207 RKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLS 1266

Query: 418  SEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEFIE 477
             E K   +   V   +            +              + K LE SLA  ++  +
Sbjct: 1267 KEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKK 1326

Query: 478  ELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLGHGDF 537
              +            +    ++ + + +   RR +  + ++     + S ++      D 
Sbjct: 1327 SEKKTA----RKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDEDDE 1382

Query: 538  SSEN 541
              E+
Sbjct: 1383 DDED 1386

Length = 1388

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 50/274 (18%), Positives = 118/274 (43%), Gaps = 15/274 (5%)

Query: 76  EKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQLLKEVDDS 135
            +++ + + +L EL E   +     +  +++     ++L         L+E+L  +    
Sbjct: 500 REEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQ--QL 557

Query: 136 RERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLSDSIEREKKRL 195
           +E L++      EL+     EL L R  +       E+   L+ KL  L + + + ++ L
Sbjct: 558 KEELRQLEDRLQELKEL-LEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELL 616

Query: 196 N-NEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSE 254
              E+++ + E + +   + ++LEK+  +A+  E      +  +++L+E++ E   +   
Sbjct: 617 QSLELSEAENELEEAEEELESELEKLNLQAELEELL----QAALEELEEKVEELEAEIRR 672

Query: 255 VEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREARKLKASYENTELLKEKLLEEK 314
             ++       E    +    ++ L+EE+     E+ E  K     E      E+L   K
Sbjct: 673 ELQR----IENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLI---EELESRK 725

Query: 315 SRRERVEQELAKLREVQQSMDQLEDELSSWKFLI 348
           +  E +++EL KL +  + +++L ++L       
Sbjct: 726 AELEELKKELEKLEKALELLEELREKLGKAGLRA 759

Length = 908

>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 50/239 (20%), Positives = 98/239 (41%), Gaps = 40/239 (16%)

Query: 366 ALQKEVIDSMMKLGEANAQLK-----QMEVALDAAQLGKQSAETEAALVKEKEEVSKSEV 420
           ALQ ++    M+L E +A++K     ++ V +   QL K   E     +  +       V
Sbjct: 167 ALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNE-----LLIRGATEGLCV 221

Query: 421 KRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKE---LESSLAKKEEFIE 477
             +   L V+ EE   L++ +   K    +    E     L KE   L++SL        
Sbjct: 222 HSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASL-------R 274

Query: 478 ELESNLHAQQE----INSRQRD-------EIKSLSEKLNNEERRIKSLERENDRLRSEIS 526
           ELES     QE    ++  Q D        ++ L ++  N+  +   +  +N  LR ++ 
Sbjct: 275 ELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVD 334

Query: 527 LLESKLGHGDFSSENTKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQAVEELKSQS 585
            LE+ L   + S  ++  + ++         +Q ++ L+  LQ +  ++ +  +L  +S
Sbjct: 335 KLEASLKEANVSKFSSYKVELL---------QQKLKLLEERLQASDHEIHSYIQLYQES 384

Length = 977

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 115/524 (21%), Positives = 227/524 (43%), Gaps = 39/524 (7%)

Query: 62  QMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGRE 121
           Q + +     +  +E ++R+ + +LE      +KAE  R     +     + L  A G  
Sbjct: 31  QALVAQLQKKIKELEARIRELEEELEAERAARAKAEKARADLSRELEELSERLEEA-GGA 89

Query: 122 GVLQEQLLKEVDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKL 181
              Q +L K+ +    +L+K ++   E   +H   L   RK    A    E +  +E +L
Sbjct: 90  TAAQIELNKKREAELAKLRKDLE---EANLQHEEALATLRKKHQDA--INELSEQIE-QL 143

Query: 182 THLSDSIEREKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDL 241
                  E+EK +L  EV  L     + + +I       E +A+  E +   L+ ++ +L
Sbjct: 144 QKQKAKAEKEKSQLQAEVDDL----LAQLDQIAKAKLNAEKKAKQLESQLSELQVKLDEL 199

Query: 242 KEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREARKLKASYE 301
           + QLN+  +QKS ++ + S                  L  ++   EA+V    KLK+  E
Sbjct: 200 QRQLNDLTSQKSRLQSENSD-----------------LTRQLEEAEAQVSNLSKLKSQLE 242

Query: 302 NT-ELLKEKLLEEKSRRERVEQELAKLR-EVQQSMDQLEDELSSWKFLIRDIPGVSCSED 359
           +  E  K  L EE   R  ++ +L +L  ++    +QLE+E  +   L R +   +   +
Sbjct: 243 SQLEEAKRSLEEESRERANLQAQLRQLEHDLDSLREQLEEESEAKAELERQLSKANA--E 300

Query: 360 IPVKFAALQKEVIDSMMKLGEA----NAQLKQMEVALDAAQLGKQSAETEAALVKEKEEV 415
           I    +  + E      +L E     N ++ ++E A +AA     S E   + ++ + E 
Sbjct: 301 IQQWRSKFESEGALRAEELEELKKKLNQKISELEEAAEAANAKCDSLEKTKSRLQSELED 360

Query: 416 SKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEF 475
            + E++R  +  S + +++     ++ E+K+  ++   +        + L + L + +  
Sbjct: 361 LQIELERANAAASELEKKQKNFDKILAEWKRKVDELQAELDTAQREARNLSTELFRLKNE 420

Query: 476 IEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKL--G 533
           +EEL+  + A +  N   +DEI  L+++L    R +  LE+   RL +E   L++ L   
Sbjct: 421 LEELKDQVEALRRENKNLQDEIHDLTDQLGEGGRNVHELEKARRRLEAEKDELQAALEEA 480

Query: 534 HGDFSSENTKVLRM-VNTLAVDNEAKQTIEALQTELQKTKEKLQ 576
                 E +KVLR  V    + +E ++ +   + E + T++  Q
Sbjct: 481 EAALELEESKVLRAQVELSQIRSEIERRLAEKEEEFENTRKNHQ 524

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated

 Score = 41.5 bits (98), Expect = 0.002
 Identities = 36/196 (18%), Positives = 71/196 (36%), Gaps = 19/196 (9%)

Query: 169 SAEEKASLLEGKLTHLSDSIEREKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAE 228
                 + L   L  L   + +       +     +  +  I  +  +LEK+E   +  E
Sbjct: 47  KLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELE 106

Query: 229 KESEMLKNQMKDLKEQLNEC---LNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRN 285
           +E   L+N++K+L++++       N   ++   L       F  T     ++ L+ E   
Sbjct: 107 EEISELENEIKELEQEIERLEPWGNFDLDLSLLLGFKYVSVFVGTVPEDKLEELKLESDV 166

Query: 286 YEAEVREARKLK----------ASYENTELLKE------KLLEEKSRRERVEQELAKLRE 329
              E     K             S E  E LK+      +L EE +  E + +   +L E
Sbjct: 167 ENVEYISTDKGYVYVVVVVLKELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEE 226

Query: 330 VQQSMDQLEDELSSWK 345
           +++  + L +EL    
Sbjct: 227 IEKERESLLEELKELA 242

Length = 646

>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups

 Score = 40.7 bits (95), Expect = 0.003
 Identities = 65/335 (19%), Positives = 130/335 (38%), Gaps = 45/335 (13%)

Query: 155 NELNLRRKAESAAASAEEKASLLEGKLTHLSDSIEREKKRL-NNEVTQLKRESKSSISRI 213
            + N + +  S     E           H   S++R++     +   Q   +    +S  
Sbjct: 69  TDENGQLENTSLRTVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDF 128

Query: 214 GADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKK-------LSSSTFQE 266
              LE +    QNAEK   +L        E L + L +K  ++ K       LS +  + 
Sbjct: 129 --QLEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDARI 186

Query: 267 FSTTDSNILVKHLQEEIRNYEAEVREARKLKASYENT-----ELLKEKLLEEKSRRERVE 321
                  I V+ L+E++     E+      +    ++     ++LKE+ +  K   + ++
Sbjct: 187 KLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLK 246

Query: 322 QELAKLREVQQSMDQLEDELSSWKFLIRDIPG--VSCSEDI----PVKFAALQKEVIDSM 375
            EL ++ E ++ + +LE E S     +R++    +   ED+    P+++    ++V +  
Sbjct: 247 AELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQ 306

Query: 376 MKLGEANAQLKQMEVALDAAQ-LGKQSAETEAALVK--------EKEEVSKSEVKRIESM 426
             L  A  Q+++  + LD  Q L  +  + EA+L +         K E+ + ++K +E  
Sbjct: 307 DLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEER 366

Query: 427 LSVVTEE---------------RDKLRNVVNEFKK 446
           L     E               +D L  +  E KK
Sbjct: 367 LQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKK 401

Length = 977

>gnl|CDD|227608 COG5283, COG5283, Phage-related tail protein [Function unknown]

 Score = 40.7 bits (95), Expect = 0.003
 Identities = 36/192 (18%), Positives = 80/192 (41%), Gaps = 21/192 (10%)

Query: 69  LDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQL 128
            +A+   +K   D + +++E+N     ++   +++  Q+  AE +L +  G+ GV  EQ 
Sbjct: 63  SEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAENKLRSLSGQFGVASEQ- 121

Query: 129 LKEVDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLSDSI 188
           L       +RL+  I   ++  A     L         A +          K+  L +S 
Sbjct: 122 LMLQQKEIQRLQYAISTLNKSMAAQARLLEQTGNKFGTADA----------KVVGLRESF 171

Query: 189 EREKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNEC 248
            R+ + LN ++ + K+ +      +   L++        +K S+ L  +++ L+E   + 
Sbjct: 172 GRQTEALNKQLERTKKVA----DALTYVLDE------AQQKLSQALSARLERLQESRTQM 221

Query: 249 LNQKSEVEKKLS 260
                ++ K+L 
Sbjct: 222 SQSSGQLGKRLE 233

Length = 1213

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 40.0 bits (94), Expect = 0.004
 Identities = 59/301 (19%), Positives = 126/301 (41%), Gaps = 26/301 (8%)

Query: 72  LTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLY---AEQELAAAKGREGVLQEQL 128
           L  +EK++++ + K  +L +   + E   KK  +       AEQ     +  +    E+L
Sbjct: 461 LKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEEL 520

Query: 129 LKEVDDSRERLKKQIQLCSEL-----EAKHRNELNLRRKA-ESAAASAEEKASLLEGKLT 182
            K+ ++  +  +K I+L  E+     E +   EL  +    E      EE+ + L  +L 
Sbjct: 521 EKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELE 580

Query: 183 HLSDSIEREKKRLNNEVTQLKRE------SKSSISRIGADLEKMECRAQNAEKESEMLKN 236
            L      E +    E+     E      ++  + R   +L+K+E     A +E    + 
Sbjct: 581 ELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEK 640

Query: 237 QMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNI---------LVKHLQEEIRNYE 287
           ++++L+++L E   + SE E +     + E S   + +           + +++ +   +
Sbjct: 641 RLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLK 700

Query: 288 AEVREARKLKASYENTELLKEKL--LEEKSRRERVEQELAKLREVQQSMDQLEDELSSWK 345
            E+ E  K K   E  E   E++  L EK ++ +   +   L +V +   ++ +EL+  K
Sbjct: 701 EELEEREKAKKELEKLEKALERVEELREKVKKYKALLKERALSKVGEIASEIFEELTEGK 760

Query: 346 F 346
           +
Sbjct: 761 Y 761

Length = 880

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	724
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	100.0
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	100.0
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	99.84
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	99.83
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	99.63
PRK02224	880	chromosome segregation protein; Provisional	99.54
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	99.54
PRK02224	880	chromosome segregation protein; Provisional	99.44
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.44
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.38
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.37
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.36
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	99.34
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.34
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.31
PRK03918	880	chromosome segregation protein; Provisional	99.29
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	99.29
PRK03918	880	chromosome segregation protein; Provisional	99.21
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.11
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	99.08
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	99.07
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	99.02
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.96
PRK01156	895	chromosome segregation protein; Provisional	98.92
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	98.85
PRK01156	895	chromosome segregation protein; Provisional	98.83
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.73
KOG0996	1293	consensus Structural maintenance of chromosome pro	98.71
KOG0971	1243	consensus Microtubule-associated protein dynactin	98.7
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	98.6
KOG0971	1243	consensus Microtubule-associated protein dynactin	98.58
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.48
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	98.45
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.4
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	98.38
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	98.36
PRK04778	569	septation ring formation regulator EzrA; Provision	98.3
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.28
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	98.26
KOG0933	1174	consensus Structural maintenance of chromosome pro	98.22
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.05
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	98.04
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	98.02
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	97.99
KOG0933	1174	consensus Structural maintenance of chromosome pro	97.95
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.93
KOG0996	1293	consensus Structural maintenance of chromosome pro	97.91
PRK04778	569	septation ring formation regulator EzrA; Provision	97.85
KOG0964	1200	consensus Structural maintenance of chromosome pro	97.79
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	97.77
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	97.76
PF14662	193	CCDC155: Coiled-coil region of CCDC155	97.74
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.73
KOG4673	961	consensus Transcription factor TMF, TATA element m	97.71
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	97.7
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.68
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	97.64
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.62
PRK11637	428	AmiB activator; Provisional	97.57
PRK11637	428	AmiB activator; Provisional	97.47
PRK04863	1486	mukB cell division protein MukB; Provisional	97.35
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.35
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	97.32
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	97.28
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	97.27
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	97.26
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.12
KOG0963	629	consensus Transcription factor/CCAAT displacement	97.05
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	97.05
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	97.05
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	97.03
KOG0964	1200	consensus Structural maintenance of chromosome pro	97.03
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.01
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	97.0
PHA02562	562	46 endonuclease subunit; Provisional	96.98
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.95
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	96.94
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.92
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.91
PHA02562	562	46 endonuclease subunit; Provisional	96.86
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	96.76
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	96.72
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	96.69
PF14662	193	CCDC155: Coiled-coil region of CCDC155	96.65
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	96.63
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	96.59
PRK09039	343	hypothetical protein; Validated	96.57
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	96.42
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	96.32
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	96.32
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.22
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	96.07
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	96.03
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	95.97
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	95.95
COG5185	622	HEC1 Protein involved in chromosome segregation, i	95.84
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	95.69
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	95.67
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	95.65
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	95.57
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	95.57
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	95.51
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	95.38
COG4942	420	Membrane-bound metallopeptidase [Cell division and	95.34
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	95.31
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	95.17
KOG0963	629	consensus Transcription factor/CCAAT displacement	95.16
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	95.11
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	94.99
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	94.83
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	94.67
PRK09039	343	hypothetical protein; Validated	94.65
COG4942	420	Membrane-bound metallopeptidase [Cell division and	94.54
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	94.39
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	94.33
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	94.23
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	94.1
KOG4673	961	consensus Transcription factor TMF, TATA element m	93.92
KOG1003	205	consensus Actin filament-coating protein tropomyos	93.8
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	93.48
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	93.35
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	93.33
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	93.17
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	93.07
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	92.45
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	92.13
PRK11281	1113	hypothetical protein; Provisional	91.71
KOG1003	205	consensus Actin filament-coating protein tropomyos	91.62
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	91.44
COG4477	570	EzrA Negative regulator of septation ring formatio	91.33
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	91.02
KOG0018	1141	consensus Structural maintenance of chromosome pro	90.84
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	90.67
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	90.47
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	90.45
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	90.31
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	89.51
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	89.5
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	89.43
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	88.88
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	88.83
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	88.66
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	88.35
KOG2991	330	consensus Splicing regulator [RNA processing and m	88.05
KOG0979	1072	consensus Structural maintenance of chromosome pro	87.93
COG4477	570	EzrA Negative regulator of septation ring formatio	87.2
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	86.89
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	86.76
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	86.37
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	85.87
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	85.78
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	85.62
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	85.44
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	84.47
KOG1937	521	consensus Uncharacterized conserved protein [Funct	84.42
COG4026	290	Uncharacterized protein containing TOPRIM domain,	84.27
PRK04863	1486	mukB cell division protein MukB; Provisional	84.17
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	83.99
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	83.59
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	83.41
COG4372	499	Uncharacterized protein conserved in bacteria with	83.26
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	83.14
COG4372	499	Uncharacterized protein conserved in bacteria with	82.02
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	81.46
COG5185	622	HEC1 Protein involved in chromosome segregation, i	81.34
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	80.75
KOG0249	916	consensus LAR-interacting protein and related prot	80.69
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	80.37
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	80.22

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=100.00  E-value=1.3e-71  Score=651.16  Aligned_cols=524  Identities=34%  Similarity=0.494  Sum_probs=174.5

Q ss_pred             hhHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH---
Q 004893          186 DSIEREKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECL-------NQKSEV---  255 (724)
Q Consensus       186 ~~~e~e~~~L~~~l~~L~~e~~~~~~~l~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~-------~~~~~L---  255 (724)
                      ..++.....|+.++..+..+....+..+.+++..++..+..++..+..++.++..++..++.+.       ..+..|   
T Consensus       142 ~~le~~~~~L~~E~~~~~~e~~~~~~~l~~~~~~l~~~~~~~e~~~~~l~~e~~~l~~~le~~~~~~~e~e~~~~~L~~~  221 (722)
T PF05557_consen  142 RKLEEEKRRLQREKEQLLEEAREEISSLKNELSELERQAENAESQIQSLESELEELKEQLEELQSELQEAEQQLQELQAS  221 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334455566666666666666666666666666665555555555555555555555444443       344444   


Q ss_pred             -------HHHHhchhhhhhccccHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004893          256 -------EKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAE-------VREARKLKASYENTELLKEKLLEEKSRRERVE  321 (724)
Q Consensus       256 -------e~~~~~L~~e~~~~~e~~~~~k~L~~ql~~le~~-------~~El~~Lr~~~~~~ellkee~~~lq~kl~~~E  321 (724)
                             +..+..|+.++.....+..+.+.+.+++.++..+       ..|+++||+.+.++++|++++.+|+.++.+++
T Consensus       222 q~~~~e~e~~i~~Le~el~~~~~~~~i~k~l~~ql~~i~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E  301 (722)
T PF05557_consen  222 QASLAEAEQKIKELEAELKDQESDAEINKELKEQLAHIRELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLERLE  301 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHhhHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence                   3444555555555556666778887776655544       36788899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC-CCCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhh
Q 004893          322 QELAKLREVQQSMDQLEDELSSWKFLIRDIP-GVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQ  400 (724)
Q Consensus       322 ~~~~~~~~le~~~~~Le~el~~w~~~~~~~~-~~~~~~~l~~~~~~Lq~e~~~l~~~~~~~~~~~~~le~~~~~~e~ek~  400 (724)
                      ..+.++..+++++..|+.++.+|..++.+.+ ++.+|++|.++|..++.+...|++++|.+.+.+..++..+..++.++.
T Consensus       302 ~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~  381 (722)
T PF05557_consen  302 ELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKE  381 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999888764 678999999999999999999999999999999999999999998888


Q ss_pred             hhHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchhchHhhHHHHHHHHHH-------H
Q 004893          401 SAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKK-------E  473 (724)
Q Consensus       401 ~le~e~~~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l~~~~~e~~~~~~~~~~~~~~~~~le~~l~~~-------~  473 (724)
                      .+..++..+...+..++..+.||+++..++.+||+.||++|++|+.+.+....+. .....+..++..+..+       .
T Consensus       382 ~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ele  460 (722)
T PF05557_consen  382 QLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPSE-QDTQRIKEIEDLEQLVDEYKAELE  460 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCch-hHHHHHhhHHHHHHHHHHHHHHHH
Confidence            8888899999999999999999999999999999999999999998765432221 1112222233333333       3


Q ss_pred             HHHHHHHHHHHHHHHHhHhHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C
Q 004893          474 EFIEELESNLHAQQEINSRQRDEIK--------------SLSEKLNNEERRIKSLERENDRLRSEISLLESKLGH----G  535 (724)
Q Consensus       474 ~~i~~Le~~l~~~~~~~~~l~~e~~--------------~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~~----~  535 (724)
                      ..+..++..+..++..+..+..++.              .+.+.++.++.++..|+.++..+..++..|+.+|++    |
T Consensus       461 ~~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g  540 (722)
T PF05557_consen  461 AQLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEKLTLQG  540 (722)
T ss_dssp             ---------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT
T ss_pred             HHHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            3555566665555443333332222              234567789999999999999999999999999987    9


Q ss_pred             CCCcccchhhhccccccchHH--HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccccc---hhhHHHHHHHHHHHH
Q 004893          536 DFSSENTKVLRMVNTLAVDNE--AKQTIEALQTELQKTKEKLQAVEELKSQSGDTGKLVDSY---ISGKITQLKEQIATL  610 (724)
Q Consensus       536 ~~~~~~~ril~l~~n~~~~~~--~~~~l~~l~~E~~~L~~~l~~l~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~  610 (724)
                      .|+++++|||||++||++.+.  .+.+|+.|++||++|+.++..++.+++.  +.+.+|.+.   ...++.+|+.+|+++
T Consensus       541 ~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le~~~~~--~~~~~p~~~~~~~~~e~~~l~~~~~~~  618 (722)
T PF05557_consen  541 EFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARLRSLEEGNSQ--PVDAVPTSSLESQEKEIAELKAELASA  618 (722)
T ss_dssp             --BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT------------------HHHHHHHHHHHHH
T ss_pred             ccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC--CcccccchhhhhhHHHHHHHHHHHHHH
Confidence            999999999999999999874  4789999999999999999999876654  355566654   356899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcceEEeccccccCCccceeEEEeecccCCCCCeeEEeecCCc--eeeccCCCCC
Q 004893          611 EKREERYKTVFADRISVFRRACCELFGYKIVMDEHQRANGIPVTHFTLQSIYAQGDDEKLEFEYESSN--TNIMVNDYTS  688 (724)
Q Consensus       611 ~k~~~rlke~f~~k~~efr~a~~~l~Gy~i~~~~~~~~~g~~~~~~~l~s~y~~~~~~~l~f~~~~~~--~~~~~~~~~~  688 (724)
                      +|+++|||+||++||.+||+|||+||||+|+|    .|||    +|||+||||++|+|||+|++++|+  |++++++|. 
T Consensus       619 ekr~~RLkevf~~ks~eFr~av~~llGyki~~----~~~~----~~rl~S~ya~~~~~~l~f~~~~~~~~~~~~~~~~~-  689 (722)
T PF05557_consen  619 EKRNQRLKEVFKAKSQEFREAVYSLLGYKIDF----MPNG----RVRLTSMYAESPDDYLIFDLESGTGSMKLLESEFS-  689 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEE----ETTT----EEEEEETT-SSTT--EEEEEE-----EEEE--CCH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcceeee----cCCC----eEEEEecccCCCCCeEEEeecCCCccceeCCCchH-
Confidence            99999999999999999999999999999999    7888    999999999999999999998776  999988875 


Q ss_pred             hhhhHHHHHHHhhhcCCcchhhhhhhhhhhhccC
Q 004893          689 QPEISRQVDIFVRKMNSIPAFTANLTVESFNRRT  722 (724)
Q Consensus       689 ~~~~~~~~~~~~~~~~~ip~fla~ltl~l~~~~t  722 (724)
                       +.|.++|.+||.+++|||||||||||+||+++|
T Consensus       690 -~~~~~~i~~~v~~~~siP~FLaalTlel~~~~t  722 (722)
T PF05557_consen  690 -PELEDLIEFWVEERNSIPAFLAALTLELFEKQT  722 (722)
T ss_dssp             -HCTHHHHHHHTTTS--HHHHHHHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCC
Confidence             789999999999999999999999999999998

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2e-61  Score=519.50  Aligned_cols=673  Identities=26%  Similarity=0.307  Sum_probs=491.8

Q ss_pred             CccCCCCCCCCCCcC-CCCcccCCCCCCCCCcceeeccCCC---CC-CCCCCCCCCCcccchHHhhHhhHhHHHHHHHHH
Q 004893            1 MILRTPPPKRPRDAA-GEPIIECPPTAGGSDRRLVIYEDPS---PA-GRESSHQPSDHLLCTYQCRQMVKSDFLDALTNV   75 (724)
Q Consensus         1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   75 (724)
                      |++|+|.+.+-+++. .||.|.-   +.||+..+.||.+.+   |. -.+++.+|-++..|||.|+.|++.+-...+...
T Consensus         1 Md~~~s~~~~~~a~~~~s~~~s~---~~~~~s~l~~~s~s~g~sP~~~q~s~~~~~~s~n~~~~s~~~~~~~~l~~Lqns   77 (716)
T KOG4593|consen    1 MDDRGSNTMVLSALRSLSNFPSQ---PVESGSQLDISSSSPGSSPNLYQPSMQSEERSENITSKSLLMQLEDELMQLQNS   77 (716)
T ss_pred             CccccchhHHHHHhhccCCCCCc---ccccccccchhccCCCCCccccCcCCCchhhhccchhHHHHHHHHHHHHHHhhH
Confidence            999999999988877 6665333   446667788887755   21 234566677889999999999999976666655


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893           76 EKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQLLKEVDDSRERLKKQIQLCSELEAKHRN  155 (724)
Q Consensus        76 e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er~~~~~~~~~e~lk~~l~~~~~l~~~L~~  155 (724)
                      .+...--..+...+...  ..+.+++..+.....+....+++.+....+++++....+..++.++..+..+.+++..+..
T Consensus        78 ~kr~el~~~k~~~i~~r--~~~~~~dr~~~~~~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae  155 (716)
T KOG4593|consen   78 HKRAELELTKAQSILAR--NYEAEVDRKHKLLTRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAE  155 (716)
T ss_pred             HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44443333333333332  3455555556666666666677777777777776555555555555555554444444433


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893          156 ELNLRRKAESAAASAEEKASLLEGKLTHLSDSIEREKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLK  235 (724)
Q Consensus       156 e~~~~~~~e~~~~~l~~~l~~l~~el~e~~~~~e~e~~~L~~~l~~L~~e~~~~~~~l~~ele~~~~~~~~~E~e~~~L~  235 (724)
                      ....+.++++...                         +++.++.-.+.+.+.+...+.+....+.++...+..++....
T Consensus       156 ~~~lr~k~dss~s-------------------------~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~  210 (716)
T KOG4593|consen  156 LGTLRNKLDSSLS-------------------------ELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQ  210 (716)
T ss_pred             HHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333332                         333333334444444444555555555555545555444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhhHHHHHH
Q 004893          236 NQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAE-------VREARKLKASYENTELLKE  308 (724)
Q Consensus       236 ~el~el~~~l~e~~~~~~~Le~~~~~L~~e~~~~~e~~~~~k~L~~ql~~le~~-------~~El~~Lr~~~~~~ellke  308 (724)
                      .....+....+. ..       +.....+++....+.+.+++...+++..++.+       ..++.++|+...++.+|++
T Consensus       211 ~~~~~l~e~~~~-~q-------q~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~Lqe  282 (716)
T KOG4593|consen  211 ELQASLEERADH-EQ-------QNAELEQQLSLSEELEAINKNMKDQLQELEELERALSQLREELATLRENRETVGLLQE  282 (716)
T ss_pred             HHHHHHHHHHHH-HH-------HHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            444443332222 22       22333333333335566666666666655554       5778889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC---------------------------CCCCCCchH
Q 004893          309 KLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIP---------------------------GVSCSEDIP  361 (724)
Q Consensus       309 e~~~lq~kl~~~E~~~~~~~~le~~~~~Le~el~~w~~~~~~~~---------------------------~~~~~~~l~  361 (724)
                      ++..|++++.+++.....+..++.++..+..++..|+.+.....                           ++.+|.+++
T Consensus       283 E~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rwE~~~~~~~~~~~~~~~~~~~~~e~s~~~~l~~~~~t~~s~~~~~  362 (716)
T KOG4593|consen  283 ELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQRWERADQEMGSLRTPEDLMEKLVNEQSRNANLKNKNSTVTSPARGL  362 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhhhccccccccCcccch
Confidence            99999999999999999999999999999999999998765521                           234677777


Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004893          362 VKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVV  441 (724)
Q Consensus       362 ~~~~~Lq~e~~~l~~~~~~~~~~~~~le~~~~~~e~ek~~le~e~~~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l  441 (724)
                      ..+..+.++...-+..++....+++.+..++..+......+-.++.++............++...+..++++++.++..+
T Consensus       363 ~r~~q~lke~~k~~~~ite~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~~~l~~~tk~reqlk~lV  442 (716)
T KOG4593|consen  363 ERARQLLKEELKQVAGITEEETKLKELHETLARRLQKRALLLTQERDLNRAILGSKDDEKRLAEELPQVTKEREQLKGLV  442 (716)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhHHHHHHHHHHHHHH
Confidence            77777777777778889999999999999988777777777777888888888888899999999999999999999888


Q ss_pred             HhccCCCCCCCCcchhchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893          442 NEFKKPKNDGGGDERANLTLTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRL  521 (724)
Q Consensus       442 ~~~~~e~~~~~~~~~~~~~~~~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l  521 (724)
                      ..++................+........+..+.+.+|..+|..........+.+..-+...+....+++..|+.+...+
T Consensus       443 ~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rL  522 (716)
T KOG4593|consen  443 QKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELLEEENDRL  522 (716)
T ss_pred             HHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            87754332110000001134445555666667777777777776665555555555556666777788888888888888


Q ss_pred             HHHHHHHHHHhcCCCCCcccchhhhccccccchH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccccch--h
Q 004893          522 RSEISLLESKLGHGDFSSENTKVLRMVNTLAVDN--EAKQTIEALQTELQKTKEKLQAVEELKSQSGDTGKLVDSYI--S  597 (724)
Q Consensus       522 ~~e~~~Le~~l~~~~~~~~~~ril~l~~n~~~~~--~~~~~l~~l~~E~~~L~~~l~~l~~~~~~~~~~~~~~~~~~--~  597 (724)
                      +   ..++.+..+|+|....+||||+++||+++.  ..+..++.|++||++|+..+..++.++.+..+.+....|.+  .
T Consensus       523 r---~~~e~~~l~gd~~~~~~rVl~~~~npt~~~~~~~k~~~e~LqaE~~~lk~~l~~le~~~~~~~d~~i~~~s~~~~~  599 (716)
T KOG4593|consen  523 R---AQLERRLLQGDYEENITRVLHMSTNPTSKARQIKKNRLEELQAELERLKERLTALEGDKMQFRDGEIAVHSLLAFS  599 (716)
T ss_pred             H---HHHHHHHHhhhhhhhccceeeecCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHhhhhcch
Confidence            8   677888888999999999999999999554  45789999999999999999999987765444444444544  4


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceEEeccccccCCccceeEEEeecccCCCCCeeEEeecCC
Q 004893          598 GKITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKIVMDEHQRANGIPVTHFTLQSIYAQGDDEKLEFEYESS  677 (724)
Q Consensus       598 ~~~~~l~~~~~~~~k~~~rlke~f~~k~~efr~a~~~l~Gy~i~~~~~~~~~g~~~~~~~l~s~y~~~~~~~l~f~~~~~  677 (724)
                      .++++|+.++++++++++|||+||+.+|.+||+|||+||||+|+|    .+++    +|||+|+||++|++|++|.+++|
T Consensus       600 ~ev~qlk~ev~s~ekr~~rlk~vF~~ki~eFr~ac~sL~Gykid~----~~~s----~~ritS~ya~~~~~~~~~e~eS~  671 (716)
T KOG4593|consen  600 KEVAQLKKEVESAEKRNQRLKEVFASKIQEFRDACYSLLGYKIDF----TLES----RYRLTSGYAEEPDDCDIFENESG  671 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc----cccc----ceeeeeeccCCCchhhhhcCccc
Confidence            699999999999999999999999999999999999999999999    4444    99999999999999999999999


Q ss_pred             ceeeccCCCCChhhhHHHHHHHhhhcCCcchhhhhhhhhhhhccCCC
Q 004893          678 NTNIMVNDYTSQPEISRQVDIFVRKMNSIPAFTANLTVESFNRRTLS  724 (724)
Q Consensus       678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~fla~ltl~l~~~~t~~  724 (724)
                      +|.+|+++|+  +.|+++|++||..++|||||||||||+||++.|++
T Consensus       672 s~~ll~n~~~--~~~d~li~~~~~~~~siPaFlaaLTLELf~k~tv~  716 (716)
T KOG4593|consen  672 SLQLLENPYS--HTFDPLIQVWCFARSSIPAFLAALTLELFQKRTVT  716 (716)
T ss_pred             hhHhhcCCcc--cccchHhhhhhhcccCchHHHHHHHHHHHhhccCC
Confidence            9999999998  77999999999999999999999999999999986

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=3.5e-15  Score=162.86  Aligned_cols=470  Identities=18%  Similarity=0.196  Sum_probs=226.2

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccHH---HHHHHH
Q 004893          203 KRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSN---ILVKHL  279 (724)
Q Consensus       203 ~~e~~~~~~~l~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e~~~~~e~~---~~~k~L  279 (724)
                      ...+...+++++.+.--....+..+...+..++.++.....++....+.+.+....+..+....+-..+..   .....+
T Consensus       160 r~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~~el  239 (716)
T KOG4593|consen  160 RNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSLSEEL  239 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHH
Confidence            33344444555555544455555555666666666666666666655555555555544432222111100   011122


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 004893          280 QEEIRNYEAEVREARKLKASYENTELLKEKLL----------EEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIR  349 (724)
Q Consensus       280 ~~ql~~le~~~~El~~Lr~~~~~~ellkee~~----------~lq~kl~~~E~~~~~~~~le~~~~~Le~el~~w~~~~~  349 (724)
                      ............++..|.   ....-+.+++.          -|+..++.++.....+..++..+.-|+-+--.+...+.
T Consensus       240 e~i~~~~~dqlqel~~l~---~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~  316 (716)
T KOG4593|consen  240 EAINKNMKDQLQELEELE---RALSQLREELATLRENRETVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQ  316 (716)
T ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            222222222222222222   22222333322          23333334444444444444444444444444444433


Q ss_pred             cCC----CCC---CCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhHHH-HH
Q 004893          350 DIP----GVS---CSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEEVSKSE-VK  421 (724)
Q Consensus       350 ~~~----~~~---~~~~l~~~~~~Lq~e~~~l~~~~~~~~~~~~~le~~~~~~e~ek~~le~e~~~l~~~~~~~~~~-~~  421 (724)
                      .-.    ..+   +|.++...+..++.....+...+..+.+-....+.....+....+. -..+..+..++..+... ..
T Consensus       317 rwE~~~~~~~~~~~~~~~~~~~~~e~s~~~~l~~~~~t~~s~~~~~~r~~q~lke~~k~-~~~ite~~tklk~l~etl~~  395 (716)
T KOG4593|consen  317 RWERADQEMGSLRTPEDLMEKLVNEQSRNANLKNKNSTVTSPARGLERARQLLKEELKQ-VAGITEEETKLKELHETLAR  395 (716)
T ss_pred             HHHHHhhhhhccCCHHHHHHHHHHHHHHHhhhccccccccCcccchHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHH
Confidence            211    111   1444555666677777777777777776655444443322222211 11233333344444444 44


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchhchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 004893          422 RIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLS  501 (724)
Q Consensus       422 rLek~~~~~~~er~~lr~~l~~~~~e~~~~~~~~~~~~~~~~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~  501 (724)
                      ++.++...++.++|..+..+.+++...            ++...-..+.+.+.+++.|=..++...-.   .......+.
T Consensus       396 ~~~~~~~~~tq~~Dl~~~~~~~~~~~k------------rl~~~l~~~tk~reqlk~lV~~~~k~~~e---~e~s~~~~~  460 (716)
T KOG4593|consen  396 RLQKRALLLTQERDLNRAILGSKDDEK------------RLAEELPQVTKEREQLKGLVQKVDKHSLE---MEASMEELY  460 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccchHH------------HHHHHhHHHHHHHHHHHHHHHHHHHhhHh---hhhhhHHHH
Confidence            556667788889999988888774322            12222222222233333333332221110   000111122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhccccccch-HHHHHHHHHHHHHHHHHHHHHHH--H
Q 004893          502 EKLNNEERRIKSLERENDRLRSEISLLESKLGHGDFSSENTKVLRMVNTLAVD-NEAKQTIEALQTELQKTKEKLQA--V  578 (724)
Q Consensus       502 ~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~~~~~~~~~~ril~l~~n~~~~-~~~~~~l~~l~~E~~~L~~~l~~--l  578 (724)
                      ..+.........++.+...+..++...+..+..     +.. .   ..+.... ....+.++.|+.||.+|+..+-.  +
T Consensus       461 ~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~-----qr~-e---~~~~~e~i~~~~ke~~~Le~En~rLr~~~e~~~l  531 (716)
T KOG4593|consen  461 REITGQKKRLEKLEHELKDLQSQLSSREQSLLF-----QRE-E---SELLREKIEQYLKELELLEEENDRLRAQLERRLL  531 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH-H---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222333333333344443443333333333321     000 0   1111110 12367889999999999844321  1


Q ss_pred             HHhhcccCCCcccccc-chh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceEEeccccccCCccceeE
Q 004893          579 EELKSQSGDTGKLVDS-YIS-GKITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKIVMDEHQRANGIPVTHF  656 (724)
Q Consensus       579 ~~~~~~~~~~~~~~~~-~~~-~~~~~l~~~~~~~~k~~~rlke~f~~k~~efr~a~~~l~Gy~i~~~~~~~~~g~~~~~~  656 (724)
                      .+.... .....||-+ ... .-....+..+..+.+-+.|||+           -+..+-||+..|.     ||    .+
T Consensus       532 ~gd~~~-~~~rVl~~~~npt~~~~~~~k~~~e~LqaE~~~lk~-----------~l~~le~~~~~~~-----d~----~i  590 (716)
T KOG4593|consen  532 QGDYEE-NITRVLHMSTNPTSKARQIKKNRLEELQAELERLKE-----------RLTALEGDKMQFR-----DG----EI  590 (716)
T ss_pred             hhhhhh-hccceeeecCCchHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhccCCccc-----ch----hh
Confidence            111111 122223221 111 2234456666667777766665           4456788988872     44    45


Q ss_pred             EEeecccCCCCCeeEEeecCCceeeccCCCCChhhhHHHHHHHhhhcCCcchhhhhhhhhhhhccCCC
Q 004893          657 TLQSIYAQGDDEKLEFEYESSNTNIMVNDYTSQPEISRQVDIFVRKMNSIPAFTANLTVESFNRRTLS  724 (724)
Q Consensus       657 ~l~s~y~~~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~fla~ltl~l~~~~t~~  724 (724)
                      -+.|+|+.+ .+...|....++++....-|.  .-|..-|..|...|.|||||...+|.+.|.+-|.|
T Consensus       591 ~~~s~~~~~-~ev~qlk~ev~s~ekr~~rlk--~vF~~ki~eFr~ac~sL~Gykid~~~~s~~ritS~  655 (716)
T KOG4593|consen  591 AVHSLLAFS-KEVAQLKKEVESAEKRNQRLK--EVFASKIQEFRDACYSLLGYKIDFTLESRYRLTSG  655 (716)
T ss_pred             HHhhhhcch-HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhhhhcccccceeeeee
Confidence            567888762 466777777777665444343  56888999999999999999999999988887654

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=99.83  E-value=2.5e-14  Score=175.36  Aligned_cols=472  Identities=21%  Similarity=0.273  Sum_probs=317.2

Q ss_pred             hHHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHH
Q 004893           57 TYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQLLKEVDDSR  136 (724)
Q Consensus        57 ~~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er~~~~~~~~~  136 (724)
                      +-..++.-...-.....+.++....++.++..++..+..+...+..+...+...+.++..+..+..-...-+    ....
T Consensus      1021 ~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~----~~l~ 1096 (1930)
T KOG0161|consen 1021 QLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEV----AQLQ 1096 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH----HHHH
Confidence            344444444444555555566666777777777777777777777777777777777777666533322211    1112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHHHHH--hhh
Q 004893          137 ERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLS----------DSIEREKKRLNNEVTQ--LKR  204 (724)
Q Consensus       137 e~lk~~l~~~~~l~~~L~~e~~~~~~~e~~~~~l~~~l~~l~~el~e~~----------~~~e~e~~~L~~~l~~--L~~  204 (724)
                      ..++.....+.++.+.++.+...+..++....++...++.+..++++..          ...+.++..|++.++.  +.+
T Consensus      1097 k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~ 1176 (1930)
T KOG0161|consen 1097 KQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDH 1176 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            2222333446667777778888888888888888888877777776651          3445666677766665  222


Q ss_pred             HhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccc----c
Q 004893          205 ESKS---------SISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTT----D  271 (724)
Q Consensus       205 e~~~---------~~~~l~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e~~~~~----e  271 (724)
                      +...         .+.++...+++.+....+++.+.+.++.++.++...++.....+.+++.....++.++.++.    +
T Consensus      1177 e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~ 1256 (1930)
T KOG0161|consen 1177 EAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDE 1256 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence            2221         24556677777777777888888888888888888887766666666666655554443332    2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhh-hhHHHHHHH--------------HHHHH----HHHH
Q 004893          272 SNILVKHLQEEIRNYEAEVRE--------------ARKLKASY-ENTELLKEK--------------LLEEK----SRRE  318 (724)
Q Consensus       272 ~~~~~k~L~~ql~~le~~~~E--------------l~~Lr~~~-~~~ellkee--------------~~~lq----~kl~  318 (724)
                      .+.....+..+...+.....+              +.+.+... ..++.++.+              +..++    .-.+
T Consensus      1257 ~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e 1336 (1930)
T KOG0161|consen 1257 QERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLRE 1336 (1930)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222222222222211111              11111000 111111111              11111    1234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 004893          319 RVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLG  398 (724)
Q Consensus       319 ~~E~~~~~~~~le~~~~~Le~el~~w~~~~~~~~~~~~~~~l~~~~~~Lq~e~~~l~~~~~~~~~~~~~le~~~~~~e~e  398 (724)
                      .++...+.+..+..++.++..+..+|+..++.. ...+.+++......+...+..+.+.++.+.+.+..++++       
T Consensus      1337 ~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~-~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~------- 1408 (1930)
T KOG0161|consen 1337 QLEEEQEAKNELERKLSKANAELAQWKKKFEEE-VLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKA------- 1408 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------
Confidence            567777778999999999999999999998764 223355666677778888888888888888888887776       


Q ss_pred             hhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchhchHhhHHHHHHHHHHHHHHHH
Q 004893          399 KQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEFIEE  478 (724)
Q Consensus       399 k~~le~e~~~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l~~~~~e~~~~~~~~~~~~~~~~~le~~l~~~~~~i~~  478 (724)
                      +..+..++.++..+++.....+..|+++++.+++.++.|+...+.+..+++       ........+++.+..+.+.+++
T Consensus      1409 k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld-------~aq~e~r~~~tel~kl~~~lee 1481 (1930)
T KOG0161|consen 1409 KNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELD-------AAQRELRQLSTELQKLKNALEE 1481 (1930)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHH
Confidence            467778888999999999999999999999999999999999999877665       2346678889999999999999


Q ss_pred             HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCcccchhhhc
Q 004893          479 LESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLGH--GDFSSENTKVLRM  547 (724)
Q Consensus       479 Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~~--~~~~~~~~ril~l  547 (724)
                      +..++..+.+.++.++.++..+...+.++++.+.+|+..+..+..++..|...+..  +.+.....+++++
T Consensus      1482 ~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~ 1552 (1930)
T KOG0161|consen 1482 LLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRL 1552 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            99999999999999999999999999999999988888888888887777777764  3333455566654

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=99.63  E-value=3.7e-17  Score=193.65  Aligned_cols=545  Identities=19%  Similarity=0.307  Sum_probs=0.0

Q ss_pred             HHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHH
Q 004893           58 YQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQLLKEVDDSRE  137 (724)
Q Consensus        58 ~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er~~~~~~~~~e  137 (724)
                      |..-+..+..+...+..++.+|.+++..++.=+....+.+..+..+...+..+...+....+...+..+-. .....   
T Consensus        27 ~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~-kkrE~---  102 (859)
T PF01576_consen   27 LEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQAQIELN-KKREA---  102 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhhHHHH-HHHHH---
Confidence            33334444445555555555555555555555555555555555666555555555555544432222211 11111   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH
Q 004893          138 RLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLSDSIEREKKRLNNEVTQLKRESKSSISRIGADL  217 (724)
Q Consensus       138 ~lk~~l~~~~~l~~~L~~e~~~~~~~e~~~~~l~~~l~~l~~el~e~~~~~e~e~~~L~~~l~~L~~e~~~~~~~l~~el  217 (724)
                             .+..+...|...   ....+..+..+..++.....++......+...+..|++....+..+..++    .+++
T Consensus       103 -------El~~Lrr~LEe~---~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL----~~~l  168 (859)
T PF01576_consen  103 -------ELAKLRRDLEEA---NLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDL----QAQL  168 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -------HHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHH
Confidence                   111111112110   12233344444444444444444333444445556666666666555544    3446


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccc----cHHHHHHHHHHHHHHHHHHHHHH
Q 004893          218 EKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTT----DSNILVKHLQEEIRNYEAEVREA  293 (724)
Q Consensus       218 e~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e~~~~~----e~~~~~k~L~~ql~~le~~~~El  293 (724)
                      +........+++.+..++.++.+++..+++....+.++......|..++.++.    +.+.....++.....+.....++
T Consensus       169 ~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeel  248 (859)
T PF01576_consen  169 DSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEEL  248 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            66666777778888888899999999998888888888888888877776543    33333444444343444333333


Q ss_pred             HH-------HHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCCCCCchHHHHH
Q 004893          294 RK-------LKASY-ENTELLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKFA  365 (724)
Q Consensus       294 ~~-------Lr~~~-~~~ellkee~~~lq~kl~~~E~~~~~~~~le~~~~~Le~el~~w~~~~~~~~~~~~~~~l~~~~~  365 (724)
                      ..       .+... ..+.-+..++..+..   .++........++.++..+..++..|+..++.. +....+.+....+
T Consensus       249 k~~leeEtr~k~~L~~~l~~le~e~~~L~e---qleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e-~~~~~EelEeaKK  324 (859)
T PF01576_consen  249 KRQLEEETRAKQALEKQLRQLEHELEQLRE---QLEEEEEAKSELERQLSKLNAELEQWKKKYEEE-AEQRTEELEEAKK  324 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhHhhhhhhhHHHHHHHHHHHHHHHH---HHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence            21       11111 111112222333332   234455566889999999999999999998865 2222456666777


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Q 004893          366 ALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFK  445 (724)
Q Consensus       366 ~Lq~e~~~l~~~~~~~~~~~~~le~~~~~~e~ek~~le~e~~~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l~~~~  445 (724)
                      .|...+..+...+..+...+..+++.       +..+..++.++...++.....++.|+++...|+..+..|+..++...
T Consensus       325 kL~~~L~el~e~le~~~~~~~~LeK~-------k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~  397 (859)
T PF01576_consen  325 KLERKLQELQEQLEEANAKVSSLEKT-------KKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQ  397 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            88888889999999998888888776       46788899999999999999999999999999999999999998877


Q ss_pred             CCCCCCCCcchhchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893          446 KPKNDGGGDERANLTLTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEI  525 (724)
Q Consensus       446 ~e~~~~~~~~~~~~~~~~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~  525 (724)
                      .+.+.       .......+.+.+..++..++++...+..+...+..++.++..+...+++.+..+..|++.+..|..++
T Consensus       398 ~e~d~-------~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~  470 (859)
T PF01576_consen  398 AERDA-------AQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEK  470 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHH-------HHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHH
Confidence            66652       33556788999999999999999999999999999999999999888888888888888888888888


Q ss_pred             HHHHHHhcC--CCCCcccchhhhccccccc-hHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcc-----cCCCcccc-ccc
Q 004893          526 SLLESKLGH--GDFSSENTKVLRMVNTLAV-DNEAKQTIEALQTELQKTKEKLQ-AVEELKSQ-----SGDTGKLV-DSY  595 (724)
Q Consensus       526 ~~Le~~l~~--~~~~~~~~ril~l~~n~~~-~~~~~~~l~~l~~E~~~L~~~l~-~l~~~~~~-----~~~~~~~~-~~~  595 (724)
                      ..+...+..  |.+.....+++++..++.. +..+...|..-..|.+.++..+. .+..+...     .+...++. +..
T Consensus       471 ~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkK  550 (859)
T PF01576_consen  471 EELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEALREKKK  550 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            888777765  5666788889999777653 33334445544455555542222 22211111     01111111 334


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceEEeccc
Q 004893          596 ISGKITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKIVMDEH  645 (724)
Q Consensus       596 ~~~~~~~l~~~~~~~~k~~~rlke~f~~k~~efr~a~~~l~Gy~i~~~~~  645 (724)
                      +..++++|..++...++-.       ...+..++..-..+-.+.+.+.+.
T Consensus       551 LE~~l~eLe~~ld~~n~~~-------~e~~k~~kk~q~qlkdlq~~lee~  593 (859)
T PF01576_consen  551 LESDLNELEIQLDHANRAN-------EEAQKQLKKLQAQLKDLQRELEEA  593 (859)
T ss_dssp             --------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHhHhH-------HHHHHHHHHHHHHHHHHhhhhHHH
Confidence            7778888888888877655       233444455555555566666443

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PRK02224 chromosome segregation protein; Provisional

Probab=99.54  E-value=1.8e-07  Score=114.04  Aligned_cols=17  Identities=18%  Similarity=0.194  Sum_probs=7.3

Q ss_pred             HHhHHHHHHHHHHHHHh
Q 004893          427 LSVVTEERDKLRNVVNE  443 (724)
Q Consensus       427 ~~~~~~er~~lr~~l~~  443 (724)
                      ...+..+...++..+..
T Consensus       539 ~~~l~~e~~~l~~~~~~  555 (880)
T PRK02224        539 AEELRERAAELEAEAEE  555 (880)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33444444444444433

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=99.54  E-value=1.5e-07  Score=116.84  Aligned_cols=208  Identities=20%  Similarity=0.266  Sum_probs=117.1

Q ss_pred             HHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHH
Q 004893           58 YQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQLLKEVDDSRE  137 (724)
Q Consensus        58 ~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er~~~~~~~~~e  137 (724)
                      +.++...+.++...+.....++...+.+...+..+..+.+.....+...+..++..+..+..+......++ ..+.....
T Consensus       896 ~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~-~~l~~e~~  974 (1930)
T KOG0161|consen  896 LERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKL-KNLEEEIN  974 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            44555566666666666666666666655555555555555555555555555555555554433333333 33333222


Q ss_pred             HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---HHHHHHHHHHHhhhHhHHH-
Q 004893          138 RLKKQIQLCSE----LEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLSDSIER---EKKRLNNEVTQLKRESKSS-  209 (724)
Q Consensus       138 ~lk~~l~~~~~----l~~~L~~e~~~~~~~e~~~~~l~~~l~~l~~el~e~~~~~e~---e~~~L~~~l~~L~~e~~~~-  209 (724)
                      .+...+.++..    ++..+..........+.+...+.+....++..++++...++.   ....+++..+.+.++.+.. 
T Consensus       975 ~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~ 1054 (1930)
T KOG0161|consen  975 SLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQ 1054 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            22222222222    222222222222344555555666666666666665543332   2346666666677766554 


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhh
Q 004893          210 --ISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQE  266 (724)
Q Consensus       210 --~~~l~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e~  266 (724)
                        +..+......+...+.+.+.++..++.++++....+..+.+.+.+|.+++..|..++
T Consensus      1055 e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~l 1113 (1930)
T KOG0161|consen 1055 ESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEEL 1113 (1930)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              333455666677777777888888888888888888888888888888777776554

>PRK02224 chromosome segregation protein; Provisional

Probab=99.44  E-value=1.8e-06  Score=105.30  Aligned_cols=8  Identities=0%  Similarity=0.060  Sum_probs=3.5

Q ss_pred             HHHHHHHh
Q 004893          629 RRACCELF  636 (724)
Q Consensus       629 r~a~~~l~  636 (724)
                      -+++..+|
T Consensus       744 ~~~~~~~~  751 (880)
T PRK02224        744 NETFDLVY  751 (880)
T ss_pred             HHHHHHHc
Confidence            33444444

>TIGR00606 rad50 rad50

Probab=99.44  E-value=1.1e-06  Score=110.82  Aligned_cols=212  Identities=14%  Similarity=0.140  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcch----hc--hHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHh
Q 004893          419 EVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDER----AN--LTLTKELESSLAKKEEFIEELESNLHAQQ--EIN  490 (724)
Q Consensus       419 ~~~rLek~~~~~~~er~~lr~~l~~~~~e~~~~~~~~~----~~--~~~~~~le~~l~~~~~~i~~Le~~l~~~~--~~~  490 (724)
                      .++.++..+..+..++..++..++.+...+.....+..    +.  ...+..+..++..++.+|+.|+..+....  ...
T Consensus       745 eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~  824 (1311)
T TIGR00606       745 EIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTV  824 (1311)
T ss_pred             hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCH
Confidence            34445555555555555555555555443321111100    00  02233444555555555555555554321  234


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhccccccchHHHHHHHHHHHHHHHH
Q 004893          491 SRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLGHGDFSSENTKVLRMVNTLAVDNEAKQTIEALQTELQK  570 (724)
Q Consensus       491 ~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~~~~~~~~~~ril~l~~n~~~~~~~~~~l~~l~~E~~~  570 (724)
                      ..++.++..++..+..+...+..+..+...+..++..|+.++..     .....+.+.+...-+......|+.|..+++.
T Consensus       825 ~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~e-----l~~~klkl~~~l~~r~~le~~L~el~~el~~  899 (1311)
T TIGR00606       825 QQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNE-----LKSEKLQIGTNLQRRQQFEEQLVELSTEVQS  899 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777888888888888888888888888888888888666542     2233334433222222335678888888888


Q ss_pred             HHHHHHHHHHhhcccCCCcccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceE
Q 004893          571 TKEKLQAVEELKSQSGDTGKLV-DSYISGKITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKI  640 (724)
Q Consensus       571 L~~~l~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~k~~~rlke~f~~k~~efr~a~~~l~Gy~i  640 (724)
                      +...+..+.....     +.-| ......++.+++..........+.-...|......|..++..+.+|--
T Consensus       900 l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~  965 (1311)
T TIGR00606       900 LIREIKDAKEQDS-----PLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQ  965 (1311)
T ss_pred             HHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8877776552111     1111 112344566666666666666666667777777888888888877743

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.38  E-value=6.8e-06  Score=103.68  Aligned_cols=29  Identities=21%  Similarity=0.182  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcceEEe
Q 004893          614 EERYKTVFADRISVFRRACCELFGYKIVM  642 (724)
Q Consensus       614 ~~rlke~f~~k~~efr~a~~~l~Gy~i~~  642 (724)
                      ...+...|..-...|...+..|||+.-.+
T Consensus      1017 ~~~f~~~f~~~~~~f~~~~~~l~~~~~~l 1045 (1164)
T TIGR02169      1017 REVFMEAFEAINENFNEIFAELSGGTGEL 1045 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence            34455566666999999999999988655

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.37  E-value=4.2e-06  Score=105.67  Aligned_cols=66  Identities=17%  Similarity=0.261  Sum_probs=39.0

Q ss_pred             HHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHH
Q 004893           58 YQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGV  123 (724)
Q Consensus        58 ~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~  123 (724)
                      +..+...+..+...+.....++..++..+..+...+..+...+..+...+..+...+.....++..
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~~~~  306 (1179)
T TIGR02168       241 LEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQI  306 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            666666666666666666666666666666666555555555555555555555555444444333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.36  E-value=2.9e-06  Score=107.10  Aligned_cols=21  Identities=33%  Similarity=0.537  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 004893          599 KITQLKEQIATLEKREERYKT  619 (724)
Q Consensus       599 ~~~~l~~~~~~~~k~~~rlke  619 (724)
                      ++..++.++..+..+...+.+
T Consensus       916 ~l~~l~~~~~~~~~~~~~l~~  936 (1179)
T TIGR02168       916 ELEELREKLAQLELRLEGLEV  936 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344445555554444444443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=99.34  E-value=3.1e-06  Score=103.69  Aligned_cols=31  Identities=13%  Similarity=0.311  Sum_probs=22.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893          597 SGKITQLKEQIATLEKREERYKTVFADRISV  627 (724)
Q Consensus       597 ~~~~~~l~~~~~~~~k~~~rlke~f~~k~~e  627 (724)
                      ..++..+..++..++....||...|..+-..
T Consensus      1352 ~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q 1382 (1822)
T KOG4674|consen 1352 NNEKANLTKELEQLEDLKTRLAAALSEKNAQ 1382 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456777888888888888888877665444

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.34  E-value=1.1e-05  Score=100.61  Aligned_cols=44  Identities=30%  Similarity=0.466  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhc---ceEEec
Q 004893          600 ITQLKEQIATLE-KREERYKTVFADRISVFRRACCELFG---YKIVMD  643 (724)
Q Consensus       600 ~~~l~~~~~~~~-k~~~rlke~f~~k~~efr~a~~~l~G---y~i~~~  643 (724)
                      +..|...|.... ++..++++.|..-...|...+..|||   -.+.+.
T Consensus       993 ~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~if~~L~~GG~a~L~l~ 1040 (1163)
T COG1196         993 KEKLLEVIEELDKEKRERFKETFDKINENFSEIFKELFGGGTAELELT 1040 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEEeC
Confidence            334444444444 66778999999999999999999998   555553

>TIGR00606 rad50 rad50

Probab=99.31  E-value=1.2e-05  Score=101.66  Aligned_cols=73  Identities=18%  Similarity=0.156  Sum_probs=45.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhc
Q 004893          461 LTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSL--ERENDRLRSEISLLESKLG  533 (724)
Q Consensus       461 ~~~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~L--e~e~~~l~~e~~~Le~~l~  533 (724)
                      .+..++..+..+...++.++..+.........+..++..+......+...+..+  ..++..+..++..|+..+.
T Consensus       971 qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~ 1045 (1311)
T TIGR00606       971 YLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMG 1045 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            355566666666666666666666666555556666655555555555555555  6666667777777776665

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK03918 chromosome segregation protein; Provisional

Probab=99.29  E-value=2.1e-05  Score=96.25  Aligned_cols=9  Identities=11%  Similarity=-0.127  Sum_probs=5.1

Q ss_pred             eeccCCCCC
Q 004893          680 NIMVNDYTS  688 (724)
Q Consensus       680 ~~~~~~~~~  688 (724)
                      -+++.||++
T Consensus       816 lilDEp~~~  824 (880)
T PRK03918        816 LILDEPTPF  824 (880)
T ss_pred             EEEeCCCcc
Confidence            356666655

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=99.29  E-value=2.2e-05  Score=96.51  Aligned_cols=84  Identities=23%  Similarity=0.297  Sum_probs=59.8

Q ss_pred             hhHHHHHHHHHHHHHHhhhHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893          186 DSIEREKKRLNNEVTQLKRESKSS-------ISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKK  258 (724)
Q Consensus       186 ~~~e~e~~~L~~~l~~L~~e~~~~-------~~~l~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~  258 (724)
                      ..++..+..|...+..++.+....       ...+..++..++..+..+......+...+..++..++.+...+.+|+..
T Consensus       801 ~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~  880 (1822)
T KOG4674|consen  801 DKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKR  880 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555544433       4455677788888888888888888888888888888888888888888


Q ss_pred             Hhchhhhhhcc
Q 004893          259 LSSSTFQEFST  269 (724)
Q Consensus       259 ~~~L~~e~~~~  269 (724)
                      +.........+
T Consensus       881 l~~~~~~~~~l  891 (1822)
T KOG4674|consen  881 LKSAKTQLLNL  891 (1822)
T ss_pred             HHHhHHHHhhc
Confidence            88776665433

>PRK03918 chromosome segregation protein; Provisional

Probab=99.21  E-value=4.9e-05  Score=92.95  Aligned_cols=28  Identities=14%  Similarity=0.164  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 004893          365 AALQKEVIDSMMKLGEANAQLKQMEVAL  392 (724)
Q Consensus       365 ~~Lq~e~~~l~~~~~~~~~~~~~le~~~  392 (724)
                      .....++..+..++..+..++..++..+
T Consensus       455 ~~~~~ei~~l~~~~~~l~~~~~~l~~~~  482 (880)
T PRK03918        455 EEYTAELKRIEKELKEIEEKERKLRKEL  482 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555555544443

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.11  E-value=0.00016  Score=90.48  Aligned_cols=20  Identities=25%  Similarity=0.350  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 004893          600 ITQLKEQIATLEKREERYKT  619 (724)
Q Consensus       600 ~~~l~~~~~~~~k~~~rlke  619 (724)
                      ..++..++..++.....+++
T Consensus       886 ~~~l~~~l~~~~~~~~~~~~  905 (1163)
T COG1196         886 KEELEEELRELESELAELKE  905 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444443

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=99.08  E-value=0.0001  Score=85.92  Aligned_cols=112  Identities=17%  Similarity=0.251  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-cccch
Q 004893          465 LESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLGHGDFS-SENTK  543 (724)
Q Consensus       465 le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~~~~~~-~~~~r  543 (724)
                      +...+..++..+..|+..++...-....++.+...+......-...+..|.-.++.....+..|+..+....-+ ....+
T Consensus       470 ~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r  549 (775)
T PF10174_consen  470 YQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANAELRDR  549 (775)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcch
Confidence            33444444444444444444333233333333333333333334556666666666666666666666420000 01112


Q ss_pred             hhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893          544 VLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQAVE  579 (724)
Q Consensus       544 il~l~~n~~~~~~~~~~l~~l~~E~~~L~~~l~~l~  579 (724)
                      |-.|-.- .  ...+......+.|+++|+..+..++
T Consensus       550 ~~~Le~e-v--~~~~ee~~kaq~EVERLl~~L~~~E  582 (775)
T PF10174_consen  550 IQQLEQE-V--TRYREESEKAQAEVERLLDILREAE  582 (775)
T ss_pred             HHHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2111100 0  0124456677888888887777655

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=99.07  E-value=0.00011  Score=85.49  Aligned_cols=48  Identities=21%  Similarity=0.358  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 004893          217 LEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTF  264 (724)
Q Consensus       217 le~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~  264 (724)
                      ++.....+..+..+.+.+..++.++...++-.+..+..|..++..|..
T Consensus       359 l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee  406 (775)
T PF10174_consen  359 LEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEE  406 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444555555555555555555555555555555555444443

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=99.02  E-value=0.00035  Score=87.50  Aligned_cols=27  Identities=19%  Similarity=0.279  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 004893          366 ALQKEVIDSMMKLGEANAQLKQMEVAL  392 (724)
Q Consensus       366 ~Lq~e~~~l~~~~~~~~~~~~~le~~~  392 (724)
                      .|+.++..+...+..+......++..+
T Consensus       604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l  630 (1201)
T PF12128_consen  604 ELRERLEQAEDQLQSAEERQEELEKQL  630 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555555555555554443

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.96  E-value=0.00061  Score=86.09  Aligned_cols=32  Identities=19%  Similarity=0.333  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 004893          363 KFAALQKEVIDSMMKLGEANAQLKQMEVALDA  394 (724)
Q Consensus       363 ~~~~Lq~e~~~l~~~~~~~~~~~~~le~~~~~  394 (724)
                      .+..+..++..+..++..+...+..++..+..
T Consensus       675 ~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~  706 (1164)
T TIGR02169       675 ELQRLRERLEGLKRELSSLQSELRRIENRLDE  706 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555565555555555544444433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK01156 chromosome segregation protein; Provisional

Probab=98.92  E-value=0.00064  Score=83.28  Aligned_cols=36  Identities=14%  Similarity=0.374  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 004893          312 EEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFL  347 (724)
Q Consensus       312 ~lq~kl~~~E~~~~~~~~le~~~~~Le~el~~w~~~  347 (724)
                      .+......++.....+..+...+..++.....|...
T Consensus       516 ~l~~~~~~~~~l~~~l~~~~~~l~~le~~~~~~~~l  551 (895)
T PRK01156        516 KSINEYNKIESARADLEDIKIKINELKDKHDKYEEI  551 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444445555555555655566666666666544

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=98.85  E-value=4.4e-10  Score=133.84  Aligned_cols=58  Identities=22%  Similarity=0.295  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhcc
Q 004893          212 RIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFST  269 (724)
Q Consensus       212 ~l~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e~~~~  269 (724)
                      .+...++.....+..+++....|..++.++...++........|+++...|...+.++
T Consensus       332 el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~  389 (859)
T PF01576_consen  332 ELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEW  389 (859)
T ss_dssp             ----------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            3445556666666777777788888888888888777777777777777776666544

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PRK01156 chromosome segregation protein; Provisional

Probab=98.83  E-value=0.0012  Score=80.84  Aligned_cols=21  Identities=14%  Similarity=0.235  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHHHhHHh
Q 004893          327 LREVQQSMDQLEDELSSWKFL  347 (724)
Q Consensus       327 ~~~le~~~~~Le~el~~w~~~  347 (724)
                      ...+...+..++....+....
T Consensus       425 i~~l~~~i~~l~~~~~el~~~  445 (895)
T PRK01156        425 VSSLNQRIRALRENLDELSRN  445 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            356666666666665555543

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.73  E-value=0.003  Score=79.30  Aligned_cols=40  Identities=15%  Similarity=0.321  Sum_probs=28.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004893          598 GKITQLKEQIATLEKREERYKTVFADRISVFRRACCELFG  637 (724)
Q Consensus       598 ~~~~~l~~~~~~~~k~~~rlke~f~~k~~efr~a~~~l~G  637 (724)
                      ..+..+-..+.+.-....++.+.+...+..|..++....|
T Consensus       895 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~f~~~l~~~~~  934 (1201)
T PF12128_consen  895 GSVDERLRDLEDLLQRRKRLREELKKAVERFKGVLTKHSG  934 (1201)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            4455666667777777777888888888888877755554

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.71  E-value=0.002  Score=75.82  Aligned_cols=131  Identities=19%  Similarity=0.276  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHhHHH---HHH
Q 004893          136 RERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLSDSIEREKKRLNNEVTQLKRESKSS---ISR  212 (724)
Q Consensus       136 ~e~lk~~l~~~~~l~~~L~~e~~~~~~~e~~~~~l~~~l~~l~~el~e~~~~~e~e~~~L~~~l~~L~~e~~~~---~~~  212 (724)
                      .+.++.....++++.++++........++.....+...+..+..++..+....+.+...|...+..++.++...   +..
T Consensus       404 ~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~  483 (1293)
T KOG0996|consen  404 EEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEK  483 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            34455555566666666666666666677777777777777777777776666666667777777777666655   445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhh
Q 004893          213 IGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQE  266 (724)
Q Consensus       213 l~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e~  266 (724)
                      ++.++.....++..+..+++..+.+++.|........+.+.++...+..+....
T Consensus       484 ~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~  537 (1293)
T KOG0996|consen  484 LEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESL  537 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667777777777788888888888888888888887777777777776654433

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=98.70  E-value=0.0014  Score=74.67  Aligned_cols=229  Identities=17%  Similarity=0.218  Sum_probs=105.3

Q ss_pred             hhHhhHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHH
Q 004893           60 CRQMVKSDFLDALTNVEKQVRDYQS---KLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQLLKEVDDSR  136 (724)
Q Consensus        60 ~~~~~~~~~~~~l~~~e~qi~~le~---~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er~~~~~~~~~  136 (724)
                      .+.++..++...+..+.-+-.+-..   +++.++-++..++.-+..+..+...++.++.+...+..-.++        -.
T Consensus       228 eLr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe--------~k  299 (1243)
T KOG0971|consen  228 ELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQE--------AK  299 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH
Confidence            3555555555555554443333332   334445555566666666666666666666655544222222        12


Q ss_pred             HHHHHHHHHHHHHHH--HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhHH-----------HHHHHHHHHHHH
Q 004893          137 ERLKKQIQLCSELEA--KHRNELNLR--RKAESAAASAEEKASLLEGKLTHLSDSIE-----------REKKRLNNEVTQ  201 (724)
Q Consensus       137 e~lk~~l~~~~~l~~--~L~~e~~~~--~~~e~~~~~l~~~l~~l~~el~e~~~~~e-----------~e~~~L~~~l~~  201 (724)
                      ++++.++..+..-.+  .|..++..-  ..+..+...+..++++++-+++-+....+           -++..|+.....
T Consensus       300 e~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~r  379 (1243)
T KOG0971|consen  300 ERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNAR  379 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHH
Confidence            222333322222111  122222111  34555555555556555555554432211           112222222222


Q ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccHHHHHHHHHH
Q 004893          202 LKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQE  281 (724)
Q Consensus       202 L~~e~~~~~~~l~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e~~~~~e~~~~~k~L~~  281 (724)
                      |++    .+-++..=....+...+++.+++.....++.++....+.+.+.+..++..+..|+.++...--.+.++-.|.+
T Consensus       380 LKd----alVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtd  455 (1243)
T KOG0971|consen  380 LKD----ALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTD  455 (1243)
T ss_pred             HHH----HHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHh
Confidence            221    1111111111122223455666666777777777777777777777777777776666433233444444444


Q ss_pred             H-------HHHHHHHHHHHHHHHHhh
Q 004893          282 E-------IRNYEAEVREARKLKASY  300 (724)
Q Consensus       282 q-------l~~le~~~~El~~Lr~~~  300 (724)
                      .       +.-++...+++..|++.+
T Consensus       456 knlnlEekVklLeetv~dlEalee~~  481 (1243)
T KOG0971|consen  456 KNLNLEEKVKLLEETVGDLEALEEMN  481 (1243)
T ss_pred             hccCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3       333444444444444444

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=98.60  E-value=0.0026  Score=71.40  Aligned_cols=30  Identities=23%  Similarity=0.426  Sum_probs=16.7

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893           64 VKSDFLDALTNVEKQVRDYQSKLEELNENF   93 (724)
Q Consensus        64 ~~~~~~~~l~~~e~qi~~le~~l~~l~~~l   93 (724)
                      .-.|++.-+-..+.-|.++.++...+...+
T Consensus        35 s~edlk~r~L~aeniiqdlrserdalhe~l   64 (1265)
T KOG0976|consen   35 SHEDLKKRLLDAENIIQDLRSERDALHESL   64 (1265)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            334565556566666666666555554443

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=98.58  E-value=0.0033  Score=71.64  Aligned_cols=24  Identities=8%  Similarity=0.141  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHHHhcceEEe
Q 004893          619 TVFADRISVFRRACCELFGYKIVM  642 (724)
Q Consensus       619 e~f~~k~~efr~a~~~l~Gy~i~~  642 (724)
                      =.|...+.+|.+.|....-|=+.+
T Consensus       829 l~~~q~~sEa~edl~~~i~~l~~~  852 (1243)
T KOG0971|consen  829 LAFGQQVSEALEDLRKHITWLVAV  852 (1243)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHH
Confidence            356788888888888777665544

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.48  E-value=0.0048  Score=68.56  Aligned_cols=36  Identities=25%  Similarity=0.363  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004893          499 SLSEKLNNEERRIKSLERENDRLRSEISLLESKLGH  534 (724)
Q Consensus       499 ~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~~  534 (724)
                      .+...+.-++.+...|..++..|...+..|+.+++.
T Consensus       421 Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~  456 (546)
T PF07888_consen  421 ELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDK  456 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555566667777777777777777777763

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=98.45  E-value=0.006  Score=68.64  Aligned_cols=61  Identities=25%  Similarity=0.231  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccHHHHHHHHHHHHHHHHH
Q 004893          225 QNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEA  288 (724)
Q Consensus       225 ~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e~~~~~e~~~~~k~L~~ql~~le~  288 (724)
                      .-+...++.++++..+++...+........++.....|..++.   +.+-+++.+++.+..+..
T Consensus       245 tp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElS---qkeelVk~~qeeLd~lkq  305 (1265)
T KOG0976|consen  245 TPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELS---QKEELVKELQEELDTLKQ  305 (1265)
T ss_pred             hhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHHHHHH
Confidence            3445678888888888888888888887788887777766554   344455666665554443

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.40  E-value=0.0073  Score=67.14  Aligned_cols=18  Identities=22%  Similarity=0.276  Sum_probs=10.5

Q ss_pred             HhHHHHHHHHHHHHhHHH
Q 004893          415 VSKSEVKRIESMLSVVTE  432 (724)
Q Consensus       415 ~~~~~~~rLek~~~~~~~  432 (724)
                      .+..-+.+|+.++..+..
T Consensus       442 eL~~yi~~Le~r~~~~~~  459 (546)
T PF07888_consen  442 ELLEYIERLEQRLDKVAD  459 (546)
T ss_pred             HHHHHHHHHHHHHHHhhh
Confidence            445556667666655543

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=98.38  E-value=7.5e-07  Score=105.54  Aligned_cols=22  Identities=27%  Similarity=0.552  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 004893          558 KQTIEALQTELQKTKEKLQAVE  579 (724)
Q Consensus       558 ~~~l~~l~~E~~~L~~~l~~l~  579 (724)
                      +..+..|+.++..|+.++..++
T Consensus       509 ~~~~~~Le~e~~~L~~~~~~Le  530 (722)
T PF05557_consen  509 QKEIEELERENERLRQELEELE  530 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            5677778888888877777665

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=98.36  E-value=0.012  Score=68.12  Aligned_cols=61  Identities=23%  Similarity=0.312  Sum_probs=26.2

Q ss_pred             CCCCCCCCCCcccchHHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893           43 GRESSHQPSDHLLCTYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYA  110 (724)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~l  110 (724)
                      +-++++-|.+.+.---.       .+..+++.+++.|..++.++++--..+-.+..+++.+..++..+
T Consensus       157 ~~~~~~sp~~~~~~~~~-------hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~kl  217 (1195)
T KOG4643|consen  157 GKELYKSPYDIVVKKNL-------HLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKL  217 (1195)
T ss_pred             CCCCCCCcchhhcchhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555556555443333       34444444444444444444443333333333333333333333

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=98.30  E-value=0.017  Score=66.79  Aligned_cols=341  Identities=15%  Similarity=0.218  Sum_probs=146.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccc-cHHHHHHHHHHHHHHHHHHHHHHH
Q 004893          216 DLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTT-DSNILVKHLQEEIRNYEAEVREAR  294 (724)
Q Consensus       216 ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e~~~~~-e~~~~~k~L~~ql~~le~~~~El~  294 (724)
                      .+......+..++..+..+...++++...-......+..+......+...+-... ........|..++..++.......
T Consensus       106 ~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~  185 (569)
T PRK04778        106 EINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFV  185 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHH
Confidence            3344444444445555555555555554444444444444444433332221100 112223345555555555544444


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHhhhcC--CCCC-CCCchHHHHHHHHHH
Q 004893          295 KLKASYENTELLKEKLLEEKSRRERVEQELAKLREVQQSMDQ-LEDELSSWKFLIRDI--PGVS-CSEDIPVKFAALQKE  370 (724)
Q Consensus       295 ~Lr~~~~~~ellkee~~~lq~kl~~~E~~~~~~~~le~~~~~-Le~el~~w~~~~~~~--~~~~-~~~~l~~~~~~Lq~e  370 (724)
                      .|-.... ..-.++-+..++..+..++.....+..+=..+.. +=.++.+...-+...  .|.. ...+++..+..++..
T Consensus       186 ~l~~~Gd-~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~  264 (569)
T PRK04778        186 ELTESGD-YVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQ  264 (569)
T ss_pred             HHhcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Confidence            4332221 1111122223333333333333333222222221 223333333222221  1211 234678888888888


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-------hHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 004893          371 VIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEEV-------SKSEVKRIESMLSVVTEERDKLRNVVNE  443 (724)
Q Consensus       371 ~~~l~~~~~~~~~~~~~le~~~~~~e~ek~~le~e~~~l~~~~~~-------~~~~~~rLek~~~~~~~er~~lr~~l~~  443 (724)
                      +......++.+..+  ..+..+..       +...+..+...++.       ......++...+..+......+...++.
T Consensus       265 i~~~~~~l~~l~l~--~~~~~~~~-------i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~  335 (569)
T PRK04778        265 IDENLALLEELDLD--EAEEKNEE-------IQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDR  335 (569)
T ss_pred             HHHHHHHHHhcChH--HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87766666655332  21122211       11112222222222       2223334444444444444444444444


Q ss_pred             ccCCCCCCCCcchhchHhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893          444 FKKPKNDGGGDERANLTLTKELESSLAKKEEFIEELESNLHAQ-------QEINSRQRDEIKSLSEKLNNEERRIKSLER  516 (724)
Q Consensus       444 ~~~e~~~~~~~~~~~~~~~~~le~~l~~~~~~i~~Le~~l~~~-------~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~  516 (724)
                      +.....=..++    ......++..+..+...+..+...+...       ......+...+..+......+...+..|..
T Consensus       336 l~~sY~l~~~e----~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk  411 (569)
T PRK04778        336 VKQSYTLNESE----LESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRK  411 (569)
T ss_pred             HHHccccCchh----HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43322100000    1234455555555555555555544322       122222333333333334444445555555


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCcccchhhhccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 004893          517 ENDRLRSEISLLESKLGHGDFSSENTKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQ  576 (724)
Q Consensus       517 e~~~l~~e~~~Le~~l~~~~~~~~~~ril~l~~n~~~~~~~~~~l~~l~~E~~~L~~~l~  576 (724)
                      .-...+..+..+...+.      .-.+.+..++-|.........+..+..++..|..++.
T Consensus       412 ~E~eAr~kL~~~~~~L~------~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~  465 (569)
T PRK04778        412 DELEAREKLERYRNKLH------EIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELE  465 (569)
T ss_pred             HHHHHHHHHHHHHHHHH------HHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence            55555555555555554      1223444455666554456777888888888887665

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.28  E-value=0.0015  Score=72.36  Aligned_cols=277  Identities=13%  Similarity=0.178  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHH
Q 004893          236 NQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTT-----DSNILVKHLQEEIRNYEAEVREARKLKASY-ENTELLKEK  309 (724)
Q Consensus       236 ~el~el~~~l~e~~~~~~~Le~~~~~L~~e~~~~~-----e~~~~~k~L~~ql~~le~~~~El~~Lr~~~-~~~ellkee  309 (724)
                      .+|.+|...++.+-+.+.-|+.+...|..++..+.     +...+......++..+.....+..+-|... ..+.-|+++
T Consensus        42 ~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e  121 (546)
T KOG0977|consen   42 KELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREE  121 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            35555556666666666666666666665554321     222333333334444443333333222222 222234444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 004893          310 LLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQME  389 (724)
Q Consensus       310 ~~~lq~kl~~~E~~~~~~~~le~~~~~Le~el~~w~~~~~~~~~~~~~~~l~~~~~~Lq~e~~~l~~~~~~~~~~~~~le  389 (724)
                      +.+++.++...+.          .....+.++..|...+....  ....-+...++.+..+...|..+++.+...+..+.
T Consensus       122 ~~elr~~~~~~~k----------~~~~~re~~~~~~~~l~~le--Ae~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r  189 (546)
T KOG0977|consen  122 LKELRKKLEKAEK----------ERRGAREKLDDYLSRLSELE--AEINTLKRRIKALEDELKRLKAENSRLREELARAR  189 (546)
T ss_pred             HHHHHHHHHHHHH----------HHhhhHHHHHHHhhhhhhhh--hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            4444444333222          22233444444544433210  00111334455666677777777777777777776


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHhHH----HHHHHHHH----H--HhHHHHHHHHHHHHHhccCCCCCCCCcchhch
Q 004893          390 VALDAAQLGKQSAETEAALVKEKEEVSKS----EVKRIESM----L--SVVTEERDKLRNVVNEFKKPKNDGGGDERANL  459 (724)
Q Consensus       390 ~~~~~~e~ek~~le~e~~~l~~~~~~~~~----~~~rLek~----~--~~~~~er~~lr~~l~~~~~e~~~~~~~~~~~~  459 (724)
                      ..+++.-..+..++..+..|..++.-+..    .+..+...    .  ..=....+.|...+.++.++.+.         
T Consensus       190 ~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~---------  260 (546)
T KOG0977|consen  190 KQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEA---------  260 (546)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHH---------
Confidence            66655444444445555555444443331    11111111    0  00000111111111111111100         


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004893          460 TLTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLG  533 (724)
Q Consensus       460 ~~~~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~  533 (724)
                      ....+-+..=.-|+..|..+..............+.++..+...+..++.++.+|+..+..|...|..|+..+.
T Consensus       261 ~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~  334 (546)
T KOG0977|consen  261 ISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLD  334 (546)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhh
Confidence            00000001112233333333322222222333455667677777778888888888888888888888888775

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=98.26  E-value=0.019  Score=66.05  Aligned_cols=76  Identities=18%  Similarity=0.249  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcc-cCCCcccccc---------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893          558 KQTIEALQTELQKTKEKLQAVEELKSQ-SGDTGKLVDS---------YISGKITQLKEQIATLEKREERYKTVFADRISV  627 (724)
Q Consensus       558 ~~~l~~l~~E~~~L~~~l~~l~~~~~~-~~~~~~~~~~---------~~~~~~~~l~~~~~~~~k~~~rlke~f~~k~~e  627 (724)
                      ...+-.+..|+..|+.++..|+.+.-+ ++...+|..-         ++.....+-...|..+..    =++-...|..+
T Consensus       420 q~~f~~~~~e~adl~e~~e~le~~~~ql~~et~ti~eyi~ly~~qr~~~k~r~~e~~~~i~~l~~----~~e~mk~kl~e  495 (617)
T PF15070_consen  420 QSRFMDLMEEKADLKERVEKLEHRFIQLSGETDTIGEYITLYQSQRAVLKQRHQEKEEYISRLAQ----DREEMKVKLLE  495 (617)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHhccCccchhhhhccccccccccchhHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence            345567888999999999988876544 2344444221         122222222222322222    23444558888


Q ss_pred             HHHHHHHHhc
Q 004893          628 FRRACCELFG  637 (724)
Q Consensus       628 fr~a~~~l~G  637 (724)
                      ..+.|-.|.|
T Consensus       496 lq~lv~~l~~  505 (617)
T PF15070_consen  496 LQELVLRLVG  505 (617)
T ss_pred             HHHHHHHHHh
Confidence            8888888875

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.22  E-value=0.026  Score=65.72  Aligned_cols=73  Identities=23%  Similarity=0.356  Sum_probs=34.6

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004893          460 TLTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKL  532 (724)
Q Consensus       460 ~~~~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l  532 (724)
                      .++.+++.++..++.++++-...+..-......++.+...++..+....+.+..++..+..+..++..++..+
T Consensus       787 ~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv  859 (1174)
T KOG0933|consen  787 RRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKV  859 (1174)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555544444444444333333444444444444444444555555555555555555444444

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.05  E-value=0.0076  Score=61.44  Aligned_cols=198  Identities=21%  Similarity=0.262  Sum_probs=112.0

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHH-
Q 004893           65 KSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQLLKEVDDSRERLKKQI-  143 (724)
Q Consensus        65 ~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er~~~~~~~~~e~lk~~l-  143 (724)
                      +..+..++..+...+..++..+......+..++.++..++.++..++..+.....++.....++ .............. 
T Consensus         3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL-~~~e~~~de~er~~k   81 (237)
T PF00261_consen    3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKL-EEAEKRADESERARK   81 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHH-HHHHHHHHHHCHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            4567778888888888888888888888889999999999999999988888888766666555 33333322221111 


Q ss_pred             ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHhHHHHH--
Q 004893          144 ----------QLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLSDSIEREKKRLNNEVTQLKRESKSSIS--  211 (724)
Q Consensus       144 ----------~~~~~l~~~L~~e~~~~~~~e~~~~~l~~~l~~l~~el~e~~~~~e~e~~~L~~~l~~L~~e~~~~~~--  211 (724)
                                ..+..++..+..-......++..+.+...++..++..|.....    ....++..+..|+.+.+.+..  
T Consensus        82 ~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEe----R~e~~E~ki~eLE~el~~~~~~l  157 (237)
T PF00261_consen   82 VLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEE----RAEAAESKIKELEEELKSVGNNL  157 (237)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhchhHHHHHHHHHHHHHHH
Confidence                      1222333333222222244444455555555555555544432    222333333333333333311  


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q 004893          212 -RIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEF  267 (724)
Q Consensus       212 -~l~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e~~  267 (724)
                       .+......+......++..+..|...+.+.-...+.+.+.+..|+..+..|+.++.
T Consensus       158 k~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~  214 (237)
T PF00261_consen  158 KSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELE  214 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             11122233333345566666666666666666666666666666666666654443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=98.04  E-value=0.043  Score=61.47  Aligned_cols=18  Identities=39%  Similarity=0.503  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 004893          559 QTIEALQTELQKTKEKLQ  576 (724)
Q Consensus       559 ~~l~~l~~E~~~L~~~l~  576 (724)
                      .-++.|+.+|..|..++.
T Consensus       608 K~ieeLqqeNk~LKKk~~  625 (786)
T PF05483_consen  608 KNIEELQQENKALKKKIT  625 (786)
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            457788889988887765

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=98.02  E-value=0.046  Score=61.26  Aligned_cols=22  Identities=23%  Similarity=0.363  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 004893          502 EKLNNEERRIKSLERENDRLRS  523 (724)
Q Consensus       502 ~~l~~l~~~i~~Le~e~~~l~~  523 (724)
                      .+++.+..++..|+.+.+.+..
T Consensus       629 kq~~~~eikVn~L~~E~e~~kk  650 (786)
T PF05483_consen  629 KQSNVYEIKVNKLQEELENLKK  650 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            3444455555555555555544

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=97.99  E-value=0.035  Score=61.92  Aligned_cols=38  Identities=18%  Similarity=0.243  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 004893          463 KELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSL  500 (724)
Q Consensus       463 ~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l  500 (724)
                      ...+..+.+++.++..|..++..+-...-.|..++..+
T Consensus       345 ~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~Y  382 (546)
T KOG0977|consen  345 NDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAY  382 (546)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHH
Confidence            34455555566666666666655555555555555543

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.95  E-value=0.082  Score=61.75  Aligned_cols=38  Identities=18%  Similarity=0.329  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 004893          599 KITQLKEQIATLE-KREERYKTVFADRISVFRRACCELF  636 (724)
Q Consensus       599 ~~~~l~~~~~~~~-k~~~rlke~f~~k~~efr~a~~~l~  636 (724)
                      +..-++.-|..+. ++..-|.-.|.+--..|=..+..|+
T Consensus      1009 Dk~kI~ktI~~lDe~k~~~L~kaw~~VN~dFG~IFs~LL 1047 (1174)
T KOG0933|consen 1009 DKSKIKKTIEKLDEKKREELNKAWEKVNKDFGSIFSTLL 1047 (1174)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhC
Confidence            4444455555554 4455566677777777777777665

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.93  E-value=0.047  Score=58.21  Aligned_cols=132  Identities=14%  Similarity=0.187  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCC-C-----CCCCchHHHHHHHHHHHHHHHHHhhhHH
Q 004893          309 KLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPG-V-----SCSEDIPVKFAALQKEVIDSMMKLGEAN  382 (724)
Q Consensus       309 e~~~lq~kl~~~E~~~~~~~~le~~~~~Le~el~~w~~~~~~~~~-~-----~~~~~l~~~~~~Lq~e~~~l~~~~~~~~  382 (724)
                      ++..|-.++..   -..+...|+.++..|+.++..|........+ .     ....++...|..+..+...+.-+++.+.
T Consensus         5 eL~~LNdRla~---YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~   81 (312)
T PF00038_consen    5 ELQSLNDRLAS---YIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLK   81 (312)
T ss_dssp             HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH---HHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHH
Confidence            34444444443   3455578888888888888888765322100 0     0112233333444444444444455555


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 004893          383 AQLKQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNE  443 (724)
Q Consensus       383 ~~~~~le~~~~~~e~ek~~le~e~~~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l~~  443 (724)
                      ..+..++.........+..++.++..++..++........++.++..+..+++.++...+.
T Consensus        82 ~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~hee  142 (312)
T PF00038_consen   82 EELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEE  142 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhh
Confidence            5555554444444444567788888888888888888888888888888888888765544

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.91  E-value=0.11  Score=61.81  Aligned_cols=39  Identities=10%  Similarity=0.208  Sum_probs=23.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004893          598 GKITQLKEQIATLEKREERYKTVFADRISVFRRACCELF  636 (724)
Q Consensus       598 ~~~~~l~~~~~~~~k~~~rlke~f~~k~~efr~a~~~l~  636 (724)
                      ..+.+|..-......-.+-|-++-.....||..+++-+.
T Consensus      1110 ~rv~~l~~~t~kr~~~re~l~~Lrk~RldEFm~gf~~Is 1148 (1293)
T KOG0996|consen 1110 KRVAELEKFTQKRDEHREKLEELRKRRLDEFMAGFNIIS 1148 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444445555566677788888887654

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.85  E-value=0.11  Score=60.14  Aligned_cols=63  Identities=21%  Similarity=0.323  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004893          464 ELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLG  533 (724)
Q Consensus       464 ~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~  533 (724)
                      .+..........+..|...+.. ...+-.      ..+..+......+..|..+...+......++.-|.
T Consensus       445 ~y~~~~~~~~~~i~~l~~~L~~-g~VNm~------ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iq  507 (569)
T PRK04778        445 DYLEMFFEVSDEIEALAEELEE-KPINME------AVNRLLEEATEDVETLEEETEELVENATLTEQLIQ  507 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc-CCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555667777777777765 322221      22233445555666666666666666666666665

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.79  E-value=0.14  Score=59.64  Aligned_cols=122  Identities=18%  Similarity=0.339  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHhhhHhHHHHH-----------
Q 004893          146 CSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLS---DSIEREKKRLNNEVTQLKRESKSSIS-----------  211 (724)
Q Consensus       146 ~~~l~~~L~~e~~~~~~~e~~~~~l~~~l~~l~~el~e~~---~~~e~e~~~L~~~l~~L~~e~~~~~~-----------  211 (724)
                      ++.+.+++......+..+......+..++.+-..+|....   ..+..+-..+...+..++...++++.           
T Consensus       309 ~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk  388 (1200)
T KOG0964|consen  309 IKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSK  388 (1200)
T ss_pred             hHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcH
Confidence            4445555555555555555555555556655555555543   33444556677777777777666631           


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q 004893          212 -----RIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEF  267 (724)
Q Consensus       212 -----~l~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e~~  267 (724)
                           -+.+++..+...+.........++.++.++...+.+....+..++..+......+.
T Consensus       389 ~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~  449 (1200)
T KOG0964|consen  389 EERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRME  449 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHH
Confidence                 15677777777777777777777888888877777777777777666665554443

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=97.77  E-value=0.13  Score=58.59  Aligned_cols=49  Identities=20%  Similarity=0.314  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893           70 DALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAK  118 (724)
Q Consensus        70 ~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~  118 (724)
                      ......+.++...+.++..++.++...+..+...-..+.....-+..+.
T Consensus        27 e~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~   75 (522)
T PF05701_consen   27 ERVKEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELK   75 (522)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334445555555555555555555555555554444444444444333

Several sequences in this family are described as being myosin heavy chain-like.

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=97.76  E-value=0.16  Score=59.30  Aligned_cols=32  Identities=9%  Similarity=0.136  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004893          605 EQIATLEKREERYKTVFADRISVFRRACCELF  636 (724)
Q Consensus       605 ~~~~~~~k~~~rlke~f~~k~~efr~a~~~l~  636 (724)
                      .++..+..+..++..-|..+..+.-.|-+..+
T Consensus       647 l~ve~l~e~l~~lp~~fkt~n~e~l~V~sn~l  678 (1195)
T KOG4643|consen  647 LQVEDLQEKLRELPLEFKTKNDEILMVGSNIL  678 (1195)
T ss_pred             hhHHHHHHHHHhCchhhccccchhhhhhhhhh
Confidence            35667777788888888777666655555444

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=97.74  E-value=0.032  Score=53.27  Aligned_cols=170  Identities=19%  Similarity=0.230  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhhHHHH
Q 004893          305 LLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQ  384 (724)
Q Consensus       305 llkee~~~lq~kl~~~E~~~~~~~~le~~~~~Le~el~~w~~~~~~~~~~~~~~~l~~~~~~Lq~e~~~l~~~~~~~~~~  384 (724)
                      -|.+++..++..+..++..-   +.|...+..|...+.+....+..      ...+...+.+|......+.++.+.+.+.
T Consensus        19 ~L~~en~kL~~~ve~~ee~n---a~L~~e~~~L~~q~~s~Qqal~~------aK~l~eEledLk~~~~~lEE~~~~L~aq   89 (193)
T PF14662_consen   19 KLADENAKLQRSVETAEEGN---AQLAEEITDLRKQLKSLQQALQK------AKALEEELEDLKTLAKSLEEENRSLLAQ   89 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555   33444444555554443322211      1112233344444444455555555555


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchhchHhhHH
Q 004893          385 LKQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKE  464 (724)
Q Consensus       385 ~~~le~~~~~~e~ek~~le~e~~~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l~~~~~e~~~~~~~~~~~~~~~~~  464 (724)
                      +.++++.       .+.+..++..+..+...+......+.++...+..+...++.++-.|..              .+..
T Consensus        90 ~rqlEkE-------~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~--------------l~~~  148 (193)
T PF14662_consen   90 ARQLEKE-------QQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFES--------------LICQ  148 (193)
T ss_pred             HHHHHHH-------HHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHH--------------HHHH
Confidence            5555444       456666666666666666666666666666666666666666655532              1223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 004893          465 LESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKL  504 (724)
Q Consensus       465 le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l  504 (724)
                      .+..+.+....|++|...+..+......++.++..+.+++
T Consensus       149 ~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql  188 (193)
T PF14662_consen  149 RDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQL  188 (193)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555556666666666655555555555554444443

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.73  E-value=0.095  Score=55.86  Aligned_cols=38  Identities=29%  Similarity=0.477  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 004893          226 NAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSST  263 (724)
Q Consensus       226 ~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~  263 (724)
                      .++-++..+..++.+++.+++........++..+..+.
T Consensus        72 ~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lr  109 (312)
T PF00038_consen   72 RLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLR  109 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            33334444444444444444444444444444444333

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=97.71  E-value=0.14  Score=57.22  Aligned_cols=57  Identities=11%  Similarity=0.254  Sum_probs=37.2

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHch
Q 004893           64 VKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAER--KKFRDQFLYAEQELAAAKGR  120 (724)
Q Consensus        64 ~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~--~~lq~~l~~le~el~~~~~~  120 (724)
                      .+.++..-+..+++.+..+-.+...++.++..+..+.  .-+.+.+.....-|..+..+
T Consensus       403 l~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~E  461 (961)
T KOG4673|consen  403 LREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAE  461 (961)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            4568999999999999998888888888876443332  12223444455555555443

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=97.70  E-value=0.17  Score=57.77  Aligned_cols=50  Identities=8%  Similarity=0.121  Sum_probs=22.5

Q ss_pred             hHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893           61 RQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYA  110 (724)
Q Consensus        61 ~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~l  110 (724)
                      .+.++.-+..++.++..++...+......-.+|.....-++.+..+|...
T Consensus        32 ~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~   81 (522)
T PF05701_consen   32 KETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKA   81 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444444444444444444444433

Several sequences in this family are described as being myosin heavy chain-like.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.68  E-value=0.031  Score=57.00  Aligned_cols=43  Identities=19%  Similarity=0.337  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhh
Q 004893          224 AQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQE  266 (724)
Q Consensus       224 ~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e~  266 (724)
                      -..+......++..+..|..++.++......++..+..|+..+
T Consensus       164 ~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~i  206 (237)
T PF00261_consen  164 EEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEI  206 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444455555555555555555555555555555555444

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=97.64  E-value=0.26  Score=58.29  Aligned_cols=16  Identities=6%  Similarity=0.293  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHHHHH
Q 004893          559 QTIEALQTELQKTKEK  574 (724)
Q Consensus       559 ~~l~~l~~E~~~L~~~  574 (724)
                      .+|..|.++.+.+...
T Consensus      1731 aeL~~Le~r~~~vl~~ 1746 (1758)
T KOG0994|consen 1731 AELAGLEKRVESVLDH 1746 (1758)
T ss_pred             HHhhhHHHHHHHHHHH
Confidence            4555555555555433

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.62  E-value=0.29  Score=58.32  Aligned_cols=72  Identities=28%  Similarity=0.304  Sum_probs=39.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004893          462 TKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLG  533 (724)
Q Consensus       462 ~~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~  533 (724)
                      +..+..++.+....|+..+..+..+......+..+...+...+...+..+.......+.+..++..-+.++.
T Consensus       736 ~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~  807 (1074)
T KOG0250|consen  736 LEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKLR  807 (1074)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            344555555555555555555555555445555555555555555555555555555566665555555554

>PRK11637 AmiB activator; Provisional

Probab=97.57  E-value=0.068  Score=59.67  Aligned_cols=60  Identities=15%  Similarity=0.204  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHH
Q 004893           67 DFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQE  126 (724)
Q Consensus        67 ~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~e  126 (724)
                      +...++..++.++...+.++..++.++..++.++..+..++..+..++..+..++..++.
T Consensus        44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~  103 (428)
T PRK11637         44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNK  103 (428)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444444444444444444333333

>PRK11637 AmiB activator; Provisional

Probab=97.47  E-value=0.15  Score=56.84  Aligned_cols=69  Identities=14%  Similarity=0.126  Sum_probs=42.4

Q ss_pred             hhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHH
Q 004893           60 CRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQL  128 (724)
Q Consensus        60 ~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er~  128 (724)
                      ..+..+.++..++...+.++..++.++..+..++..++.++..++.++..++.++..+..++..++.++
T Consensus        44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI  112 (428)
T PRK11637         44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASI  112 (428)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355556666666666666666666666666666666666666666666666666666666655555544

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.35  E-value=0.94  Score=57.69  Aligned_cols=37  Identities=16%  Similarity=0.118  Sum_probs=21.9

Q ss_pred             hccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004893          546 RMVNTLAVDNEAKQTIEALQTELQKTKEKLQAVEELK  582 (724)
Q Consensus       546 ~l~~n~~~~~~~~~~l~~l~~E~~~L~~~l~~l~~~~  582 (724)
                      .|..+|..-...+.+......-...+..++-+|.+..
T Consensus       929 ~L~~Dp~~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~  965 (1486)
T PRK04863        929 VLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVV  965 (1486)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444554333446666666666667777776666554

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.35  E-value=0.5  Score=54.45  Aligned_cols=47  Identities=6%  Similarity=0.098  Sum_probs=23.6

Q ss_pred             HHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893           58 YQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFR  104 (724)
Q Consensus        58 ~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq  104 (724)
                      ...+.+.+.++...-...-..+..+...+..+..++.........+.
T Consensus       148 ~~~l~~~iee~~~~~~~~~~ele~lq~~~~~~~~~~~~~~~~l~~~~  194 (698)
T KOG0978|consen  148 LEELRDEIEELRELASTRMEELEKLQLYSDEILRQLDRFRVELRSLK  194 (698)
T ss_pred             hhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            55555666665555555444555555544444444444444443333

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=97.32  E-value=0.65  Score=55.20  Aligned_cols=63  Identities=24%  Similarity=0.289  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHhhcccCCCccccccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893          558 KQTIEALQTELQKTKEKLQ-AVEELKSQSGDTGKLVDSY--ISGKITQLKEQIATLEKREERYKTVFADRISV  627 (724)
Q Consensus       558 ~~~l~~l~~E~~~L~~~l~-~l~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~k~~~rlke~f~~k~~e  627 (724)
                      ++..+.|+.|-+.|..+-. .|..+.+-       ...+  -++-+.....+|..+++++.++-.-.+.+..-
T Consensus      1688 r~rAe~L~~eA~~Ll~~a~~kl~~l~dL-------e~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~~rv~~ 1753 (1758)
T KOG0994|consen 1688 RERAEQLRTEAEKLLGQANEKLDRLKDL-------ELEYLRNEQALEDKAAELAGLEKRVESVLDHINERVLY 1753 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhh
Confidence            4556777777777753322 12211110       0111  13446778889999999998877666555443

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=97.28  E-value=0.87  Score=56.00  Aligned_cols=23  Identities=13%  Similarity=0.101  Sum_probs=12.7

Q ss_pred             HHhhHhhHhHHHHHHHHHHHHHH
Q 004893           58 YQCRQMVKSDFLDALTNVEKQVR   80 (724)
Q Consensus        58 ~~~~~~~~~~~~~~l~~~e~qi~   80 (724)
                      |..+..+...+...+..+..++.
T Consensus       173 ~~~l~e~~~~~~~~~e~l~~~~~  195 (908)
T COG0419         173 SELLKEVIKEAKAKIEELEGQLS  195 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555555555

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=97.27  E-value=0.31  Score=50.53  Aligned_cols=48  Identities=10%  Similarity=0.174  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 004893          215 ADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSS  262 (724)
Q Consensus       215 ~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L  262 (724)
                      .++.....++..+..++..-.++....+..+......+.+++.++..+
T Consensus       206 ~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~  253 (306)
T PF04849_consen  206 KQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQL  253 (306)
T ss_pred             HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444444444444

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=97.26  E-value=0.66  Score=54.07  Aligned_cols=26  Identities=35%  Similarity=0.457  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004893          275 LVKHLQEEIRNYEAEVREARKLKASY  300 (724)
Q Consensus       275 ~~k~L~~ql~~le~~~~El~~Lr~~~  300 (724)
                      -++.|.+.+..+.....|+.+||...
T Consensus       129 ei~rl~Ee~~~l~~qlee~~rLk~ia  154 (717)
T PF09730_consen  129 EIKRLEEEIELLNSQLEEAARLKEIA  154 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555433

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.12  E-value=0.54  Score=55.18  Aligned_cols=27  Identities=22%  Similarity=0.183  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893          144 QLCSELEAKHRNELNLRRKAESAAASA  170 (724)
Q Consensus       144 ~~~~~l~~~L~~e~~~~~~~e~~~~~l  170 (724)
                      ..+..++..|..+...+..+|+++.+-
T Consensus       488 q~l~~LEkrL~eE~~~R~~lEkQL~eE  514 (697)
T PF09726_consen  488 QSLQQLEKRLAEERRQRASLEKQLQEE  514 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555556666666665555555443

; GO: 0016021 integral to membrane

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=97.05  E-value=0.82  Score=51.35  Aligned_cols=83  Identities=17%  Similarity=0.226  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHH
Q 004893          364 FAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLG----KQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRN  439 (724)
Q Consensus       364 ~~~Lq~e~~~l~~~~~~~~~~~~~le~~~~~~e~e----k~~le~e~~~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~  439 (724)
                      .+.|..+...+.++++.+...+..++..+.....+    ++..+.++.....++.-.-..+.+.+.++..+++++..++.
T Consensus       184 e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~  263 (629)
T KOG0963|consen  184 EAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLRE  263 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566677777777777777777777666542222    12222233333333444444455555666777888888888


Q ss_pred             HHHhccC
Q 004893          440 VVNEFKK  446 (724)
Q Consensus       440 ~l~~~~~  446 (724)
                      ++.....
T Consensus       264 ql~~~N~  270 (629)
T KOG0963|consen  264 QLAKANS  270 (629)
T ss_pred             HHHhhhh
Confidence            8877543

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=97.05  E-value=0.97  Score=52.18  Aligned_cols=350  Identities=14%  Similarity=0.185  Sum_probs=149.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893          164 ESAAASAEEKASLLEGKLTHLSDSIEREKKRLNNEVTQLKRESKSSISRIG-ADLEKMECRAQNAEKESEMLKNQMKDLK  242 (724)
Q Consensus       164 e~~~~~l~~~l~~l~~el~e~~~~~e~e~~~L~~~l~~L~~e~~~~~~~l~-~ele~~~~~~~~~E~e~~~L~~el~el~  242 (724)
                      ...+..+......+...+-............|+..+..+...+..+..-.. .+.......+..++.....|+..++.+-
T Consensus       135 r~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP  214 (560)
T PF06160_consen  135 REEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIP  214 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            333455555556666666555555555666777777777777666532221 2444455555666666666666666666


Q ss_pred             HHHHHHHH----HHHHHHHHHhchhhhhhccc--cHHHHHHHHHHHHHHHHHHHHH--HHHHH----HhhhhHH----HH
Q 004893          243 EQLNECLN----QKSEVEKKLSSSTFQEFSTT--DSNILVKHLQEEIRNYEAEVRE--ARKLK----ASYENTE----LL  306 (724)
Q Consensus       243 ~~l~e~~~----~~~~Le~~~~~L~~e~~~~~--e~~~~~k~L~~ql~~le~~~~E--l~~Lr----~~~~~~e----ll  306 (724)
                      .-+..+..    ++.+|..-...+..+.=.+.  +.......+.+++.........  +...+    .....++    .+
T Consensus       215 ~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~l  294 (560)
T PF06160_consen  215 KLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDIL  294 (560)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            65555443    23444443333332221111  2333333444443333222111  11111    1111111    11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC-CCCCCCchHHHHHHHHHHHHHHHHHhhhHHHHH
Q 004893          307 KEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIP-GVSCSEDIPVKFAALQKEVIDSMMKLGEANAQL  385 (724)
Q Consensus       307 kee~~~lq~kl~~~E~~~~~~~~le~~~~~Le~el~~w~~~~~~~~-~~~~~~~l~~~~~~Lq~e~~~l~~~~~~~~~~~  385 (724)
                      +.+...-..--+........+..+..+...|..++......+.=.. ....+..+...+..+......+...+..-..-.
T Consensus       295 e~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~y  374 (560)
T PF06160_consen  295 EKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPY  374 (560)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCH
Confidence            1111111111112222223334444445555555554443331000 111122233334444444444444444433333


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchhchHhhHHH
Q 004893          386 KQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKEL  465 (724)
Q Consensus       386 ~~le~~~~~~e~ek~~le~e~~~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l~~~~~e~~~~~~~~~~~~~~~~~l  465 (724)
                      ..+...+..+.......+.+...+...+..+...-.+...++..+.......+..+....  +.          +.-..+
T Consensus       375 S~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~n--LP----------Glp~~y  442 (560)
T PF06160_consen  375 SEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSN--LP----------GLPEDY  442 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CC----------CCCHHH
Confidence            444333333222222233333344444444544444444555555555555555555421  11          111334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004893          466 ESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKL  532 (724)
Q Consensus       466 e~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l  532 (724)
                      ..........|..+...|....       -.+..++..+......+..|......+-......|.-+
T Consensus       443 ~~~~~~~~~~i~~l~~~L~~~p-------inm~~v~~~l~~a~~~v~~L~~~t~~li~~A~L~E~~i  502 (560)
T PF06160_consen  443 LDYFFDVSDEIEELSDELNQVP-------INMDEVNKQLEEAEDDVETLEEKTEELIDNATLAEQLI  502 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCC-------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555566666655555322       12223334444444555555555555554444444444

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=97.05  E-value=1.3  Score=53.49  Aligned_cols=6  Identities=50%  Similarity=0.960  Sum_probs=2.3

Q ss_pred             CCCCCC
Q 004893            6 PPPKRP   11 (724)
Q Consensus         6 ~~~~~~   11 (724)
                      +||=-|
T Consensus       353 ~pP~vP  358 (1317)
T KOG0612|consen  353 VPPVVP  358 (1317)
T ss_pred             CCCCCC
Confidence            344333

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.03  E-value=0.94  Score=51.74  Aligned_cols=99  Identities=16%  Similarity=0.284  Sum_probs=41.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchhchHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893          408 LVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEFIEELESNLHAQQ  487 (724)
Q Consensus       408 ~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l~~~~~e~~~~~~~~~~~~~~~~~le~~l~~~~~~i~~Le~~l~~~~  487 (724)
                      ....++..++..+..++.++..+.-++..|-.++.....-...       ..+....|+........-+..+..+++.+.
T Consensus       483 ~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~-------~~~~~s~L~aa~~~ke~irq~ikdqldels  555 (1118)
T KOG1029|consen  483 LMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKE-------TTQRKSELEAARRKKELIRQAIKDQLDELS  555 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccC-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444455555555555555555555554444433221110       012233444444444444444444444443


Q ss_pred             HHhHhHHHHHHHHHHHHHHHHHHHHH
Q 004893          488 EINSRQRDEIKSLSEKLNNEERRIKS  513 (724)
Q Consensus       488 ~~~~~l~~e~~~l~~~l~~l~~~i~~  513 (724)
                      ......-.+++.++.++.+++..+..
T Consensus       556 kE~esk~~eidi~n~qlkelk~~~~~  581 (1118)
T KOG1029|consen  556 KETESKLNEIDIFNNQLKELKEDVNS  581 (1118)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            33333333444444444444444333

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.03  E-value=1.1  Score=52.59  Aligned_cols=47  Identities=15%  Similarity=0.138  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cceEEeccccccCC
Q 004893          603 LKEQIATLEKREERYKTVFADRISVFRRACCELF-----GYKIVMDEHQRANG  650 (724)
Q Consensus       603 l~~~~~~~~k~~~rlke~f~~k~~efr~a~~~l~-----Gy~i~~~~~~~~~g  650 (724)
                      |..-.+.+..-..++.+..+.-=+.--+||...|     ||.=.|..- .|.|
T Consensus       989 L~~R~eELd~s~~sI~eLi~vLdqrK~eai~~TFkqV~knFsevF~~L-Vp~G 1040 (1200)
T KOG0964|consen  989 LKKRQEELDRSKDSILELITVLDQRKYEAIDLTFKQVKKNFSEVFSRL-VPGG 1040 (1200)
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh-CCCC
Confidence            3333333333333444443333333345555555     555555443 4566

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.01  E-value=0.69  Score=54.31  Aligned_cols=72  Identities=14%  Similarity=0.099  Sum_probs=40.8

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCC
Q 004893          370 EVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPK  448 (724)
Q Consensus       370 e~~~l~~~~~~~~~~~~~le~~~~~~e~ek~~le~e~~~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l~~~~~e~  448 (724)
                      +...|...+..++.+...|+..+..-..-|..|-..+.+       .+..+.-++..+..-++|+..|+..+..+-+-.
T Consensus       588 ~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~-------akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~  659 (697)
T PF09726_consen  588 DTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGD-------AKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVM  659 (697)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            445566666666666666776665433344444333333       444444444555556677777777777665443

; GO: 0016021 integral to membrane

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=97.00  E-value=1.1  Score=51.83  Aligned_cols=88  Identities=15%  Similarity=0.187  Sum_probs=48.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhhH
Q 004893          302 NTELLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEA  381 (724)
Q Consensus       302 ~~ellkee~~~lq~kl~~~E~~~~~~~~le~~~~~Le~el~~w~~~~~~~~~~~~~~~l~~~~~~Lq~e~~~l~~~~~~~  381 (724)
                      .+..+.++.......+..+....   ..++..+..+...+...+..+....-.+-|.+....+.....++..+...++..
T Consensus       387 ~l~~ie~~q~~~~~~l~~L~~dE---~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~  463 (560)
T PF06160_consen  387 QLEEIEEEQEEINESLQSLRKDE---KEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQV  463 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            33333333334444444444333   455555666666666666666544112246666666666667777777777766


Q ss_pred             HHHHHHHHHHH
Q 004893          382 NAQLKQMEVAL  392 (724)
Q Consensus       382 ~~~~~~le~~~  392 (724)
                      --.+..+...+
T Consensus       464 pinm~~v~~~l  474 (560)
T PF06160_consen  464 PINMDEVNKQL  474 (560)
T ss_pred             CcCHHHHHHHH
Confidence            66666555544

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PHA02562 46 endonuclease subunit; Provisional

Probab=96.98  E-value=0.59  Score=54.18  Aligned_cols=102  Identities=16%  Similarity=0.191  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhcc
Q 004893          190 REKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFST  269 (724)
Q Consensus       190 ~e~~~L~~~l~~L~~e~~~~~~~l~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e~~~~  269 (724)
                      ..+..|...+..++.+...+...+ .+++........+...+..+...+...+..+.........++..+..|+....+ 
T Consensus       299 ~~~~~l~d~i~~l~~~l~~l~~~i-~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~-  376 (562)
T PHA02562        299 DRITKIKDKLKELQHSLEKLDTAI-DELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVD-  376 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-
Confidence            344455555555555544442211 222222333444455555555566666666655556666666666666544332 


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893          270 TDSNILVKHLQEEIRNYEAEVREARK  295 (724)
Q Consensus       270 ~e~~~~~k~L~~ql~~le~~~~El~~  295 (724)
                        ...-...+..++..+.....++.+
T Consensus       377 --~~~~l~~l~~~l~~~~~~~~~~~k  400 (562)
T PHA02562        377 --NAEELAKLQDELDKIVKTKSELVK  400 (562)
T ss_pred             --hHHHHHHHHHHHHHHHHHHHHHHH
Confidence              222233444444444444444443

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=96.95  E-value=0.00054  Score=81.31  Aligned_cols=26  Identities=4%  Similarity=-0.058  Sum_probs=15.7

Q ss_pred             CCCCCcccchHHhhHhhHhHHHHHHH
Q 004893           48 HQPSDHLLCTYQCRQMVKSDFLDALT   73 (724)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~l~   73 (724)
                      +.|.|..+.-|+++.....-+..-+.
T Consensus        59 ~~~~~nw~lr~~NLk~l~~~i~~yy~   84 (713)
T PF05622_consen   59 EDVGDNWRLRVSNLKKLLRNIKSYYQ   84 (713)
T ss_dssp             SGGGG-SHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            44566666677777777666655444

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.94  E-value=0.97  Score=50.32  Aligned_cols=14  Identities=21%  Similarity=0.423  Sum_probs=5.7

Q ss_pred             HHHHHHHHhhhhHH
Q 004893          291 REARKLKASYENTE  304 (724)
Q Consensus       291 ~El~~Lr~~~~~~e  304 (724)
                      .++..|.....++.
T Consensus       439 ~~~~tLq~~~~~~~  452 (581)
T KOG0995|consen  439 NELETLQEHFSNKA  452 (581)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33334444444433

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.92  E-value=0.26  Score=49.54  Aligned_cols=23  Identities=26%  Similarity=0.299  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 004893          162 KAESAAASAEEKASLLEGKLTHL  184 (724)
Q Consensus       162 ~~e~~~~~l~~~l~~l~~el~e~  184 (724)
                      ++..++..+..+...++.++.++
T Consensus        93 aL~~E~~~ak~r~~~le~el~~l  115 (239)
T COG1579          93 ALNIEIQIAKERINSLEDELAEL  115 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444445555555555554444

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=96.91  E-value=0.00057  Score=81.07  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 004893          599 KITQLKEQIATLEKREERYKTVF  621 (724)
Q Consensus       599 ~~~~l~~~~~~~~k~~~rlke~f  621 (724)
                      ++..|+.++...++++..|.--|
T Consensus       623 e~~~L~~ql~e~~~~i~~lE~~~  645 (713)
T PF05622_consen  623 EIQALKKQLQEKDRRIESLEKEL  645 (713)
T ss_dssp             -----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            44555555555555555555444

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PHA02562 46 endonuclease subunit; Provisional

Probab=96.86  E-value=0.36  Score=55.95  Aligned_cols=16  Identities=19%  Similarity=0.264  Sum_probs=7.6

Q ss_pred             CCeeEEeecCCceeec
Q 004893          667 DEKLEFEYESSNTNIM  682 (724)
Q Consensus       667 ~~~l~f~~~~~~~~~~  682 (724)
                      +..+++...+|.-.|+
T Consensus       544 d~~~~l~~~~~~~~~~  559 (562)
T PHA02562        544 DRHLKMEKVGRFSVMV  559 (562)
T ss_pred             hcEEEEEEECCeeEEe
Confidence            3456665544433333

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=96.76  E-value=0.81  Score=46.87  Aligned_cols=39  Identities=13%  Similarity=0.080  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893          146 CSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHL  184 (724)
Q Consensus       146 ~~~l~~~L~~e~~~~~~~e~~~~~l~~~l~~l~~el~e~  184 (724)
                      +.-+-..|..+...+..++.++.+....+...-.+.+..
T Consensus        72 Nt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqs  110 (305)
T PF14915_consen   72 NTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQS  110 (305)
T ss_pred             HHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            333444455555555566666666666665555555544

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=96.72  E-value=1.9  Score=50.45  Aligned_cols=52  Identities=21%  Similarity=0.308  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhh
Q 004893          215 ADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQE  266 (724)
Q Consensus       215 ~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e~  266 (724)
                      .++..++.++..++.+...|...+.+.+.+++...........++..|...+
T Consensus       265 ~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l  316 (717)
T PF09730_consen  265 SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQL  316 (717)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556667777777888888888888888888777777666666666665444

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=96.69  E-value=1.8  Score=49.90  Aligned_cols=30  Identities=17%  Similarity=0.279  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893          217 LEKMECRAQNAEKESEMLKNQMKDLKEQLN  246 (724)
Q Consensus       217 le~~~~~~~~~E~e~~~L~~el~el~~~l~  246 (724)
                      +..++.....+..++..-++....|...++
T Consensus       449 ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e  478 (594)
T PF05667_consen  449 IKELREEIKEIEEEIRQKEELYKQLVKELE  478 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334444444444444444444333

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=96.65  E-value=0.68  Score=44.47  Aligned_cols=184  Identities=15%  Similarity=0.187  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhh
Q 004893          323 ELAKLREVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSA  402 (724)
Q Consensus       323 ~~~~~~~le~~~~~Le~el~~w~~~~~~~~~~~~~~~l~~~~~~Lq~e~~~l~~~~~~~~~~~~~le~~~~~~e~ek~~l  402 (724)
                      +...+.+|+....+|..+.......++..                ......|..++..+...+..++.++..   . ..+
T Consensus         6 L~~~v~dL~~~n~~L~~en~kL~~~ve~~----------------ee~na~L~~e~~~L~~q~~s~Qqal~~---a-K~l   65 (193)
T PF14662_consen    6 LLSCVEDLQLNNQKLADENAKLQRSVETA----------------EEGNAQLAEEITDLRKQLKSLQQALQK---A-KAL   65 (193)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHH
Confidence            33455667777777777766665543321                112222233333333333333322211   0 122


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchhchHhhHHHHHHHHHHHHHHHHHHHH
Q 004893          403 ETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEFIEELESN  482 (724)
Q Consensus       403 e~e~~~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l~~~~~e~~~~~~~~~~~~~~~~~le~~l~~~~~~i~~Le~~  482 (724)
                      +.++++++..+..+....+.|-.+.+..+++...+-..+..+..+....       ......+......+-.....|..+
T Consensus        66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl-------~~e~~~lk~~~~eL~~~~~~Lq~Q  138 (193)
T PF14662_consen   66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKL-------LAERDGLKKRSKELATEKATLQRQ  138 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHhhhhHHHHHHHHHHhhHHHHHH
Confidence            3444555555555554444444444555555555544444443222100       011112222233333445556666


Q ss_pred             HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004893          483 LHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLG  533 (724)
Q Consensus       483 l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~  533 (724)
                      +.++..........+..-+..+..+..-+..+..-...++.++..|+..+.
T Consensus       139 l~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~  189 (193)
T PF14662_consen  139 LCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLS  189 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666655555555555566667778888888888888888888888888875

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=96.63  E-value=1  Score=46.19  Aligned_cols=84  Identities=19%  Similarity=0.218  Sum_probs=55.2

Q ss_pred             CchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-HhHHHHHHHHHHHHhHHHHHHH
Q 004893          358 EDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEE-VSKSEVKRIESMLSVVTEERDK  436 (724)
Q Consensus       358 ~~l~~~~~~Lq~e~~~l~~~~~~~~~~~~~le~~~~~~e~ek~~le~e~~~l~~~~~-~~~~~~~rLek~~~~~~~er~~  436 (724)
                      +.+...+.+++.++.-|..++..+..+....++.+...+       ..+.++...+. .....+--|+.+.+.+..++..
T Consensus       217 es~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ-------~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~  289 (305)
T PF14915_consen  217 ESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQ-------DQFQDIVKKLQAESEKQVLLLEERNKELINECNH  289 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            456778889999999999999999888887776654322       11222111111 1112234477788888888999


Q ss_pred             HHHHHHhccCCC
Q 004893          437 LRNVVNEFKKPK  448 (724)
Q Consensus       437 lr~~l~~~~~e~  448 (724)
                      ++..+-.|..+.
T Consensus       290 LkEr~~qyEkEK  301 (305)
T PF14915_consen  290 LKERLYQYEKEK  301 (305)
T ss_pred             HHHHHHHHHHHh
Confidence            988887776543

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=96.59  E-value=2.6  Score=50.54  Aligned_cols=64  Identities=13%  Similarity=0.154  Sum_probs=39.0

Q ss_pred             chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHH
Q 004893          359 DIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKR  422 (724)
Q Consensus       359 ~l~~~~~~Lq~e~~~l~~~~~~~~~~~~~le~~~~~~e~ek~~le~e~~~l~~~~~~~~~~~~r  422 (724)
                      .+...+.+|+.+...++.++-.+.......+..++.++.....+...+......+......+..
T Consensus       658 s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~e  721 (1074)
T KOG0250|consen  658 SFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTE  721 (1074)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566777888888888887777777777777777665554444444444443333333333333

>PRK09039 hypothetical protein; Validated

Probab=96.57  E-value=0.32  Score=52.38  Aligned_cols=23  Identities=22%  Similarity=0.388  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 004893          558 KQTIEALQTELQKTKEKLQAVEE  580 (724)
Q Consensus       558 ~~~l~~l~~E~~~L~~~l~~l~~  580 (724)
                      ..++..|+.+++.|+.+++.++.
T Consensus       136 ~~~V~~L~~qI~aLr~Qla~le~  158 (343)
T PRK09039        136 LAQVELLNQQIAALRRQLAALEA  158 (343)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788888888888888887764

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.42  E-value=2.1  Score=49.45  Aligned_cols=43  Identities=2%  Similarity=-0.032  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHH
Q 004893           80 RDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREG  122 (724)
Q Consensus        80 ~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~  122 (724)
                      .++......++.-+..++-+++.++.....+..+.+.+..+..
T Consensus       653 e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq  695 (970)
T KOG0946|consen  653 EELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQ  695 (970)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444445555555555544444444444444433

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=96.32  E-value=1.6  Score=45.04  Aligned_cols=40  Identities=15%  Similarity=0.211  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 004893           80 RDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKG  119 (724)
Q Consensus        80 ~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~  119 (724)
                      .++..++..+....+.+......+.+.+..+......+..
T Consensus        30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeine   69 (294)
T COG1340          30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINE   69 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333334444433344444444443333333333333

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=96.32  E-value=1.2  Score=43.64  Aligned_cols=38  Identities=18%  Similarity=0.321  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893          214 GADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQ  251 (724)
Q Consensus       214 ~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~  251 (724)
                      ..++.........+..++..+..++..+...+.+.++.
T Consensus       156 ~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKer~  193 (194)
T PF15619_consen  156 RRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKERE  193 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            34445555555677777777888888777777766543

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.22  E-value=1  Score=41.87  Aligned_cols=61  Identities=16%  Similarity=0.226  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHH
Q 004893           68 FLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQL  128 (724)
Q Consensus        68 ~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er~  128 (724)
                      ++.+.......+..++.++-.+.......+.++..|+.++..++.++..+...+......+
T Consensus         5 lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l   65 (143)
T PF12718_consen    5 LKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL   65 (143)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555556666666666666666666667777777777766666666655555444

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=96.07  E-value=2.2  Score=44.38  Aligned_cols=9  Identities=33%  Similarity=0.674  Sum_probs=6.4

Q ss_pred             CCCCCCCcC
Q 004893            7 PPKRPRDAA   15 (724)
Q Consensus         7 ~~~~~~~~~   15 (724)
                      |+=++|+|.
T Consensus         5 ~~y~~r~d~   13 (306)
T PF04849_consen    5 PPYKLRADT   13 (306)
T ss_pred             CCCCccccc
Confidence            667788874

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=96.03  E-value=1.8  Score=42.82  Aligned_cols=37  Identities=14%  Similarity=0.157  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 004893          227 AEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSST  263 (724)
Q Consensus       227 ~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~  263 (724)
                      +...+...+..+..+...++...+...+|.+.|..|-
T Consensus       166 Lqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI  202 (207)
T PF05010_consen  166 LQASLKKEEMKVQSLEESLEQKTKENEELTKICDELI  202 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444455555555555566666666666666553

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=95.97  E-value=4.4  Score=46.84  Aligned_cols=58  Identities=16%  Similarity=0.250  Sum_probs=40.0

Q ss_pred             HHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893           58 YQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELA  115 (724)
Q Consensus        58 ~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~  115 (724)
                      +...+....++..++..+..++..+...+..+...+..+..+..........++.++.
T Consensus       323 ~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~  380 (594)
T PF05667_consen  323 QEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK  380 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666677777777777777777777777777777777666666666666666665555

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=95.95  E-value=0.99  Score=41.56  Aligned_cols=72  Identities=25%  Similarity=0.333  Sum_probs=44.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchhchHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893          408 LVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEFIEELESNLHAQQ  487 (724)
Q Consensus       408 ~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l~~~~~e~~~~~~~~~~~~~~~~~le~~l~~~~~~i~~Le~~l~~~~  487 (724)
                      .+..+.++.++.+..|+.++..++..+..+...++.+..+              ...+...+...+.+|.+|+....++.
T Consensus        42 ~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sE--------------k~~L~k~lq~~q~kv~eLE~~~~~~~  107 (140)
T PF10473_consen   42 CLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSE--------------KENLDKELQKKQEKVSELESLNSSLE  107 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            3444455666667777777777777777777666655332              23556666677777777777766655


Q ss_pred             HHhHhH
Q 004893          488 EINSRQ  493 (724)
Q Consensus       488 ~~~~~l  493 (724)
                      ......
T Consensus       108 ~~l~~~  113 (140)
T PF10473_consen  108 NLLQEK  113 (140)
T ss_pred             HHHHHH
Confidence            544433

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=95.84  E-value=3.5  Score=44.69  Aligned_cols=58  Identities=9%  Similarity=0.207  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHH
Q 004893           71 ALTNVEKQVRDYQSKLEELNENFS---KAEAERKKFRDQFLYAEQELAAAKGREGVLQEQL  128 (724)
Q Consensus        71 ~l~~~e~qi~~le~~l~~l~~~l~---~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er~  128 (724)
                      ...-+-.++..++.....+...+.   ++...++.+.+++..+........+-.+.+..+.
T Consensus       265 ~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~  325 (622)
T COG5185         265 FVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKS  325 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            333344444445444444444442   3334445555555555555555554444444433

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.69  E-value=5.5  Score=45.86  Aligned_cols=73  Identities=22%  Similarity=0.338  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHhhhHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 004893          191 EKKRLNNEVTQLKRESKSS---ISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSST  263 (724)
Q Consensus       191 e~~~L~~~l~~L~~e~~~~---~~~l~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~  263 (724)
                      +...|.-.+.+|.....+.   +.....+++.........-.+++.|+.+|.+++..+..+.-++..|..++....
T Consensus       445 eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q  520 (1118)
T KOG1029|consen  445 ELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQ  520 (1118)
T ss_pred             HHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Confidence            3334444444444444443   222345566666666666677788888888888887777777777777766554

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=95.67  E-value=5.9  Score=46.01  Aligned_cols=60  Identities=13%  Similarity=0.269  Sum_probs=39.4

Q ss_pred             HHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHch
Q 004893           58 YQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGR  120 (724)
Q Consensus        58 ~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~  120 (724)
                      .+.+++....+...+.   .....|..++..+..++..+..++......+..|+..+..+...
T Consensus         6 l~qlq~Erd~ya~~lk---~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q   65 (617)
T PF15070_consen    6 LKQLQAERDQYAQQLK---EESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQ   65 (617)
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3445555555444443   34555677777777777777777777777777777777777654

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=95.65  E-value=8.2  Score=47.57  Aligned_cols=26  Identities=23%  Similarity=0.406  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893          227 AEKESEMLKNQMKDLKEQLNECLNQK  252 (724)
Q Consensus       227 ~E~e~~~L~~el~el~~~l~e~~~~~  252 (724)
                      +...+..+...+.++...+++....+
T Consensus       408 ~~~~~~e~~~~~~~~~~~l~~~~~~~  433 (908)
T COG0419         408 IQEELEELEKELEELERELEELEEEI  433 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333344444444433333

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=95.57  E-value=6.3  Score=45.73  Aligned_cols=63  Identities=13%  Similarity=0.115  Sum_probs=31.1

Q ss_pred             HHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHch
Q 004893           58 YQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGR  120 (724)
Q Consensus        58 ~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~  120 (724)
                      |..+......+..+...+...+..+......+-.++..+...+.....+...++..++.+.+.
T Consensus        43 ~e~l~~~~~~L~~e~e~Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~~~~e~~~~le~~~~d  105 (698)
T KOG0978|consen   43 EEALTVLFDELAEENEKLQNLADHLQEKHATLSEQISELLDKISTAETEVDELEQQLEDLQAD  105 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHH
Confidence            335555555555555555555555555555555554444444444444444444444444444

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.57  E-value=6.4  Score=45.74  Aligned_cols=21  Identities=14%  Similarity=0.365  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHHHhHHhhhc
Q 004893          330 VQQSMDQLEDELSSWKFLIRD  350 (724)
Q Consensus       330 le~~~~~Le~el~~w~~~~~~  350 (724)
                      +..++.+=..-..+|+++..+
T Consensus       756 l~~~L~k~~~~~es~k~~~~~  776 (970)
T KOG0946|consen  756 LTKELNKKNADIESFKATQRS  776 (970)
T ss_pred             HHHHHHhhhHHHHHHHHHHhh
Confidence            333333334455677766553

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=95.51  E-value=4.1  Score=43.18  Aligned_cols=56  Identities=14%  Similarity=0.241  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHhHHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 004893          328 REVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVAL  392 (724)
Q Consensus       328 ~~le~~~~~Le~el~~w~~~~~~~~~~~~~~~l~~~~~~Lq~e~~~l~~~~~~~~~~~~~le~~~  392 (724)
                      ..+-..+..|+.+-..|+...+..         -..+..+-.+...+..++..+...+..|+..+
T Consensus       247 ekm~Kk~kklEKE~~~~k~k~e~~---------n~~l~~m~eer~~~~~~~~~~~~k~~kLe~Lc  302 (309)
T PF09728_consen  247 EKMSKKIKKLEKENQTWKSKWEKS---------NKALIEMAEERQKLEKELEKLKKKIEKLEKLC  302 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455666777777887776543         11333444444444444444444444444443

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.38  E-value=5.7  Score=43.98  Aligned_cols=61  Identities=13%  Similarity=0.140  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhccC
Q 004893          386 KQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKK  446 (724)
Q Consensus       386 ~~le~~~~~~e~ek~~le~e~~~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l~~~~~  446 (724)
                      ..|+..+...+.++..+-+.+.+....++..+.....-..++..+...++.++..-++.+.
T Consensus       321 qkLkqqL~smErek~~l~anL~dtqt~le~T~~~l~~~~er~~~l~e~v~al~rlq~~~d~  381 (772)
T KOG0999|consen  321 QKLKQQLMSMEREKAELLANLQDTQTQLEHTEGDLMEQRERVDRLTEHVQALRRLQDSKDK  381 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhHHhhhh
Confidence            3333333334444433333333333333333333333334455566666666666555543

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=95.34  E-value=5.4  Score=43.46  Aligned_cols=37  Identities=11%  Similarity=0.256  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893          210 ISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLN  246 (724)
Q Consensus       210 ~~~l~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~  246 (724)
                      ..++..++...+..+..+...-+.|...+..+..+.+
T Consensus       212 ~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA  248 (420)
T COG4942         212 LAQLNSELSADQKKLEELRANESRLKNEIASAEAAAA  248 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            4445555555555555555556666666666654444

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.31  E-value=3.9  Score=41.73  Aligned_cols=63  Identities=14%  Similarity=0.269  Sum_probs=30.5

Q ss_pred             HHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHch
Q 004893           58 YQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGR  120 (724)
Q Consensus        58 ~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~  120 (724)
                      |..-+..++++......++.+|..+..++..+..++.....++...+..+..++.+|..+..+
T Consensus        33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~   95 (265)
T COG3883          33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKEN   95 (265)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444455555555555555555555554444444444444444444444444444444443

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=95.17  E-value=2.6  Score=45.51  Aligned_cols=33  Identities=21%  Similarity=0.243  Sum_probs=24.9

Q ss_pred             CCCCCCcceeeccCCCCCCCCCCCCCCCcccchHHh
Q 004893           25 TAGGSDRRLVIYEDPSPAGRESSHQPSDHLLCTYQC   60 (724)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   60 (724)
                      ++.+.|+.+|-|+...+   .+...+.+.+-|.|--
T Consensus       292 ~~~~~dGklve~~~~~~---~~~~~~~~~~~~~~s~  324 (493)
T KOG0804|consen  292 PQSKTDGKLVESSTEGD---DSRKDDCDSLELEYSP  324 (493)
T ss_pred             cccCCCCceEEeccccc---cccccCcceEEeecch
Confidence            35677899999988555   4566788888888755

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=95.16  E-value=7.4  Score=44.05  Aligned_cols=13  Identities=31%  Similarity=0.434  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHhHH
Q 004893          334 MDQLEDELSSWKF  346 (724)
Q Consensus       334 ~~~Le~el~~w~~  346 (724)
                      +..+..++.-.+.
T Consensus       346 YeeIK~ELsiLk~  358 (629)
T KOG0963|consen  346 YEEIKKELSILKA  358 (629)
T ss_pred             HHHHHHHHHHHHH
Confidence            4455556655543

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=95.11  E-value=9.3  Score=44.89  Aligned_cols=44  Identities=14%  Similarity=0.366  Sum_probs=21.0

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893           63 MVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQ  106 (724)
Q Consensus        63 ~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~  106 (724)
                      +-+..+.........-+..++..+..+..++.......+....+
T Consensus       344 ~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e  387 (980)
T KOG0980|consen  344 QLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREE  387 (980)
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            33333333344455555566666666555554444444433333

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=94.99  E-value=5.4  Score=41.56  Aligned_cols=38  Identities=21%  Similarity=0.195  Sum_probs=28.9

Q ss_pred             CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 004893          357 SEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDA  394 (724)
Q Consensus       357 ~~~l~~~~~~Lq~e~~~l~~~~~~~~~~~~~le~~~~~  394 (724)
                      +..+...+..|+++...|..++.....+++.|...+..
T Consensus        22 ~~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~   59 (310)
T PF09755_consen   22 REQLRKRIESLQQENRVLKRELETEKARCKHLQEENRA   59 (310)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566777888888888888888888888887776654

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=94.83  E-value=4.6  Score=39.96  Aligned_cols=41  Identities=15%  Similarity=0.224  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893          215 ADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEV  255 (724)
Q Consensus       215 ~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~L  255 (724)
                      +++..++..+.+.+-.+..|+..|..-...++++..-+.+|
T Consensus       161 ~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeL  201 (207)
T PF05010_consen  161 AELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDEL  201 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333344444444444444444444444444444443

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=94.67  E-value=3.7  Score=38.19  Aligned_cols=21  Identities=19%  Similarity=0.431  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 004893          225 QNAEKESEMLKNQMKDLKEQL  245 (724)
Q Consensus       225 ~~~E~e~~~L~~el~el~~~l  245 (724)
                      ..++.+...++..++.+..+.
T Consensus       118 ~~le~~~~~~E~k~eel~~k~  138 (143)
T PF12718_consen  118 KALEQERDQWEEKYEELEEKY  138 (143)
T ss_pred             HHHHhhHHHHHHHHHHHHHHH
Confidence            333344444444444444433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PRK09039 hypothetical protein; Validated

Probab=94.65  E-value=2.5  Score=45.53  Aligned_cols=22  Identities=23%  Similarity=0.380  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHH
Q 004893          367 LQKEVIDSMMKLGEANAQLKQM  388 (724)
Q Consensus       367 Lq~e~~~l~~~~~~~~~~~~~l  388 (724)
                      |..++.....++..+.+++..+
T Consensus        44 Ls~~i~~~~~eL~~L~~qIa~L   65 (343)
T PRK09039         44 LSREISGKDSALDRLNSQIAEL   65 (343)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHH
Confidence            4444555555555555555443

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=94.54  E-value=8.7  Score=41.89  Aligned_cols=13  Identities=38%  Similarity=0.483  Sum_probs=6.4

Q ss_pred             HHHHHHHHHHHHH
Q 004893          277 KHLQEEIRNYEAE  289 (724)
Q Consensus       277 k~L~~ql~~le~~  289 (724)
                      ..|...+.+++..
T Consensus       234 ~~L~~~Ias~e~~  246 (420)
T COG4942         234 SRLKNEIASAEAA  246 (420)
T ss_pred             HHHHHHHHHHHHH
Confidence            3455555555533

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=94.39  E-value=11  Score=42.36  Aligned_cols=36  Identities=14%  Similarity=0.184  Sum_probs=14.9

Q ss_pred             CCCCCCCCcccch----HHhhHhhHhHHHHHHHHHHHHHH
Q 004893           45 ESSHQPSDHLLCT----YQCRQMVKSDFLDALTNVEKQVR   80 (724)
Q Consensus        45 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~e~qi~   80 (724)
                      ..+..+|+.+--.    |+..-..+.++......+..+|.
T Consensus       213 d~~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~  252 (581)
T KOG0995|consen  213 DNSSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMIN  252 (581)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455554332    22233344444444444444433

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=94.33  E-value=19  Score=44.79  Aligned_cols=110  Identities=24%  Similarity=0.270  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 004893          463 KELESSLAKKEEFIEELESNLHAQ---QEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLGHGDFSS  539 (724)
Q Consensus       463 ~~le~~l~~~~~~i~~Le~~l~~~---~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~~~~~~~  539 (724)
                      ..+..++..+..+|+.+...+.+.   .....+++.+...+...+..++.++..+..+...-...++.+.....     .
T Consensus       791 e~~~~d~~~~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~-----e  865 (1294)
T KOG0962|consen  791 ERFLKDLKLREKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRN-----E  865 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H
Confidence            334444455556666666665541   23445666677777777777777777777777666666666655433     1


Q ss_pred             ccchhhhccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 004893          540 ENTKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQA  577 (724)
Q Consensus       540 ~~~ril~l~~n~~~~~~~~~~l~~l~~E~~~L~~~l~~  577 (724)
                      ......++..++.-..+....+..|+.++..+..++..
T Consensus       866 ~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e  903 (1294)
T KOG0962|consen  866 LKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKE  903 (1294)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence            22333333333322222344566677777666655553

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=94.23  E-value=19  Score=44.62  Aligned_cols=40  Identities=5%  Similarity=0.044  Sum_probs=21.6

Q ss_pred             ccchHHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893           54 LLCTYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENF   93 (724)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l   93 (724)
                      +.-.|+.+.+++.........+......++.....+...+
T Consensus       572 le~~~~~~~~~~~~~~ek~~~l~~~~~~~e~~~~~~~~~~  611 (1294)
T KOG0962|consen  572 LEKELHKLSKEIQEMEERLRMLQLEEQSLEINRNGIRKDL  611 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            4445666666666666555555555555554444444444

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=94.10  E-value=9.4  Score=40.49  Aligned_cols=48  Identities=25%  Similarity=0.324  Sum_probs=24.8

Q ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893          202 LKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECL  249 (724)
Q Consensus       202 L~~e~~~~~~~l~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~  249 (724)
                      +...+...+..++..++........+-.+...|...+..+-.+.+-.+
T Consensus       108 l~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE  155 (309)
T PF09728_consen  108 LSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELRE  155 (309)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555555555554444445555555555555555544333

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=93.92  E-value=15  Score=42.03  Aligned_cols=20  Identities=10%  Similarity=0.282  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 004893          305 LLKEKLLEEKSRRERVEQEL  324 (724)
Q Consensus       305 llkee~~~lq~kl~~~E~~~  324 (724)
                      .++.++..|+.+++..|...
T Consensus       609 ~~R~Ei~~LqrRlqaaE~R~  628 (961)
T KOG4673|consen  609 MFRGEIEDLQRRLQAAERRC  628 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            45556666666666555444

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=93.80  E-value=6.7  Score=37.79  Aligned_cols=22  Identities=18%  Similarity=0.262  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHhHHhhh
Q 004893          328 REVQQSMDQLEDELSSWKFLIR  349 (724)
Q Consensus       328 ~~le~~~~~Le~el~~w~~~~~  349 (724)
                      +.+...+.-++.++..|...+.
T Consensus         7 a~lnrri~~leeele~aqErl~   28 (205)
T KOG1003|consen    7 AALNRRIQLLEEELDRAQERLA   28 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            5566667777777777766554

>smart00787 Spc7 Spc7 kinetochore protein

Probab=93.48  E-value=12  Score=39.69  Aligned_cols=19  Identities=0%  Similarity=0.177  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 004893           67 DFLDALTNVEKQVRDYQSK   85 (724)
Q Consensus        67 ~~~~~l~~~e~qi~~le~~   85 (724)
                      ++..-+.+-..-+.+++.+
T Consensus        74 EL~~~I~egr~~~~~~E~e   92 (312)
T smart00787       74 ELKKYISEGRDLFKEIEEE   92 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444433

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.35  E-value=11  Score=38.67  Aligned_cols=64  Identities=13%  Similarity=0.272  Sum_probs=31.2

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHH
Q 004893           65 KSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQL  128 (724)
Q Consensus        65 ~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er~  128 (724)
                      +..-...+..+......++.+++.+..++..+......++.++.....++..+++++..+.+++
T Consensus        33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I   96 (265)
T COG3883          33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI   96 (265)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444455555555555544444445555555555555444444444444443

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=93.33  E-value=21  Score=42.08  Aligned_cols=24  Identities=21%  Similarity=0.400  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 004893          226 NAEKESEMLKNQMKDLKEQLNECL  249 (724)
Q Consensus       226 ~~E~e~~~L~~el~el~~~l~e~~  249 (724)
                      +.+++...|...+..++.+.....
T Consensus       463 ~~~~~~~~L~d~le~~~~~~~~~~  486 (980)
T KOG0980|consen  463 DVEEENTNLNDQLEELQRAAGRAE  486 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444433

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=93.17  E-value=13  Score=39.21  Aligned_cols=71  Identities=20%  Similarity=0.194  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004893          463 KELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLG  533 (724)
Q Consensus       463 ~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~  533 (724)
                      .++..+-+.|+..+..|-.+|...-..-....-+++++-..-.-+..++..++.++.-+...+...-..+.
T Consensus       157 eEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le  227 (319)
T PF09789_consen  157 EELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE  227 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666677777777777655422211122255555555556667777777777777666666555554

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=93.07  E-value=7  Score=35.82  Aligned_cols=18  Identities=11%  Similarity=0.089  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 004893          167 AASAEEKASLLEGKLTHL  184 (724)
Q Consensus       167 ~~~l~~~l~~l~~el~e~  184 (724)
                      +..+..........+...
T Consensus        75 ~~~l~~~~~~a~~~l~~~   92 (132)
T PF07926_consen   75 INELKAEAESAKAELEES   92 (132)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=92.45  E-value=20  Score=39.59  Aligned_cols=6  Identities=0%  Similarity=0.002  Sum_probs=2.1

Q ss_pred             HHHHHH
Q 004893           68 FLDALT   73 (724)
Q Consensus        68 ~~~~l~   73 (724)
                      +...+.
T Consensus        86 l~~~~~   91 (423)
T TIGR01843        86 LESQVL   91 (423)
T ss_pred             HHHHHH
Confidence            333333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=92.13  E-value=30  Score=40.88  Aligned_cols=20  Identities=15%  Similarity=0.343  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 004893          226 NAEKESEMLKNQMKDLKEQL  245 (724)
Q Consensus       226 ~~E~e~~~L~~el~el~~~l  245 (724)
                      .+-.++..++.+++.+..++
T Consensus       395 ~~~~~~~~~e~el~~l~~~l  414 (650)
T TIGR03185       395 QLLKELRELEEELAEVDKKI  414 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PRK11281 hypothetical protein; Provisional

Probab=91.71  E-value=44  Score=41.80  Aligned_cols=74  Identities=12%  Similarity=0.017  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccHHHHHHHHHHHHHHHHHH
Q 004893          214 GADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAE  289 (724)
Q Consensus       214 ~~ele~~~~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e~~~~~e~~~~~k~L~~ql~~le~~  289 (724)
                      ..++.+.+..+..+...+..++.+.+..+..+.+......++..++.........  -.+.....++.+...+...
T Consensus       134 ~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~--l~~~~~~~l~ae~~~l~~~  207 (1113)
T PRK11281        134 LDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKA--LRPSQRVLLQAEQALLNAQ  207 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc--CCHHHHHHHHHHHHHHHHH
Confidence            3444444555555555555566666666666666655555555544432211111  1123344556665555544

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=91.62  E-value=14  Score=35.77  Aligned_cols=114  Identities=20%  Similarity=0.286  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHH
Q 004893          146 CSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLSDSIE---REKKRLNNEVTQLKRESKSSISRIGADLEKMEC  222 (724)
Q Consensus       146 ~~~l~~~L~~e~~~~~~~e~~~~~l~~~l~~l~~el~e~~~~~e---~e~~~L~~~l~~L~~e~~~~~~~l~~ele~~~~  222 (724)
                      +..+..++..-......+..++.+...+|.-++.+|.......+   .....|..+++.+......+-    ..-+.+..
T Consensus        62 ~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~----~~ee~~~q  137 (205)
T KOG1003|consen   62 MEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLS----AKEEKLEQ  137 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH----HHHHHHhh
Confidence            33344444443333356666677777777777777776653332   233344444444443333321    11122223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 004893          223 RAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSST  263 (724)
Q Consensus       223 ~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~  263 (724)
                      ....++..+..+...|.+.-...+.+.+.+..|+..+..|+
T Consensus       138 ~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE  178 (205)
T KOG1003|consen  138 KEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLE  178 (205)
T ss_pred             hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHH
Confidence            33444455555555555544444444455555544444443

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=91.44  E-value=10  Score=34.05  Aligned_cols=48  Identities=23%  Similarity=0.426  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893           70 DALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAA  117 (724)
Q Consensus        70 ~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~  117 (724)
                      .-+..+...|+.++.++..++.++..+..+++.+.++|..+..+.+.+
T Consensus        16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~   63 (120)
T PF12325_consen   16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL   63 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356777778888888888888888888887777777777765555444

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=91.33  E-value=28  Score=38.89  Aligned_cols=21  Identities=19%  Similarity=0.154  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 004893          465 LESSLAKKEEFIEELESNLHA  485 (724)
Q Consensus       465 le~~l~~~~~~i~~Le~~l~~  485 (724)
                      +-.........++++..+|+.
T Consensus       445 ~l~l~~~~~~~i~~l~~eLse  465 (570)
T COG4477         445 FLSLFFTAGHEIQDLMKELSE  465 (570)
T ss_pred             HHHHHHhhhhHHHHHHHHHhh
Confidence            334455556666666666654

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=91.02  E-value=39  Score=39.96  Aligned_cols=24  Identities=25%  Similarity=0.378  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHhHHhhhcC
Q 004893          328 REVQQSMDQLEDELSSWKFLIRDI  351 (724)
Q Consensus       328 ~~le~~~~~Le~el~~w~~~~~~~  351 (724)
                      ..+..++..++.++......+...
T Consensus       394 ~~~~~~~~~~e~el~~l~~~l~~~  417 (650)
T TIGR03185       394 SQLLKELRELEEELAEVDKKISTI  417 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC
Confidence            444455556666666666655543

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=90.84  E-value=45  Score=40.41  Aligned_cols=35  Identities=17%  Similarity=0.313  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 004893          600 ITQLKEQIATLEKREERYKTVFAD----RISVFRRACCE  634 (724)
Q Consensus       600 ~~~l~~~~~~~~k~~~rlke~f~~----k~~efr~a~~~  634 (724)
                      ....-++.+.+.|+-.+.++.|.+    ...-|.++|..
T Consensus       963 ~~~~~~EfE~ark~ak~ak~~F~~VK~~R~~~F~~~F~~ 1001 (1141)
T KOG0018|consen  963 FQEINEEFEAARKEAKKAKNAFNKVKKKRYERFMACFEH 1001 (1141)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455556666666666666666642    34445554443

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=90.67  E-value=31  Score=38.15  Aligned_cols=6  Identities=0%  Similarity=-0.396  Sum_probs=2.2

Q ss_pred             hHhhHh
Q 004893           61 RQMVKS   66 (724)
Q Consensus        61 ~~~~~~   66 (724)
                      ++..+.
T Consensus        86 l~~~~~   91 (423)
T TIGR01843        86 LESQVL   91 (423)
T ss_pred             HHHHHH
Confidence            333333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=90.47  E-value=3.8  Score=32.92  Aligned_cols=65  Identities=26%  Similarity=0.344  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893          464 ELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLL  528 (724)
Q Consensus       464 ~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~L  528 (724)
                      .|+..+..+++.++.+...+......++.+..+-+....+++..-..+..|..+++.++.++...
T Consensus         2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~   66 (69)
T PF14197_consen    2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL   66 (69)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35677777888888888888877777777777777777777777788888888888777775543

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=90.45  E-value=11  Score=38.26  Aligned_cols=33  Identities=21%  Similarity=0.208  Sum_probs=18.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 004893          360 IPVKFAALQKEVIDSMMKLGEANAQLKQMEVAL  392 (724)
Q Consensus       360 l~~~~~~Lq~e~~~l~~~~~~~~~~~~~le~~~  392 (724)
                      ....|..|...+..|+.+...-+-.+..++.++
T Consensus        16 aLqKIqelE~QldkLkKE~qQrQfQleSlEAaL   48 (307)
T PF10481_consen   16 ALQKIQELEQQLDKLKKERQQRQFQLESLEAAL   48 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            344455555555556655555555555555544

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.31  E-value=12  Score=39.20  Aligned_cols=6  Identities=17%  Similarity=0.019  Sum_probs=2.4

Q ss_pred             CCCCCC
Q 004893           43 GRESSH   48 (724)
Q Consensus        43 ~~~~~~   48 (724)
                      +++++|
T Consensus       198 p~n~~~  203 (365)
T KOG2391|consen  198 PPNASG  203 (365)
T ss_pred             CCCccc
Confidence            334444

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=89.51  E-value=24  Score=35.26  Aligned_cols=34  Identities=9%  Similarity=0.117  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 004893          229 KESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSS  262 (724)
Q Consensus       229 ~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L  262 (724)
                      ...+.|+..+..+....+...+.+.+|+.....|
T Consensus        91 ~q~s~Leddlsqt~aikeql~kyiReLEQaNDdL  124 (333)
T KOG1853|consen   91 QQESQLEDDLSQTHAIKEQLRKYIRELEQANDDL  124 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            4445555555555555555555555555555544

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=89.50  E-value=3.3  Score=40.80  Aligned_cols=64  Identities=36%  Similarity=0.484  Sum_probs=48.1

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893          460 TLTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRS  523 (724)
Q Consensus       460 ~~~~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~  523 (724)
                      ..+..+...+..++..+..+...+......+..++.++..++-.++.+..++..|+.++..|-.
T Consensus       116 ~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~  179 (194)
T PF08614_consen  116 RRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE  179 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5567777777888888888888887777777777778777777777777777777777766644

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=89.43  E-value=30  Score=36.19  Aligned_cols=137  Identities=13%  Similarity=0.155  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHHHHhHHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 004893          328 REVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAA  407 (724)
Q Consensus       328 ~~le~~~~~Le~el~~w~~~~~~~~~~~~~~~l~~~~~~Lq~e~~~l~~~~~~~~~~~~~le~~~~~~e~ek~~le~e~~  407 (724)
                      ..|..++..|..+..+....+....        ...+..|+..+..|..+.......+..|...       |-.++..++
T Consensus       109 n~L~rkl~qLr~EK~~lE~~Le~Eq--------E~~V~kL~k~i~~Le~e~~~~q~~le~Lr~E-------KVdlEn~LE  173 (310)
T PF09755_consen  109 NDLSRKLNQLRQEKVELENQLEQEQ--------EYLVNKLQKKIERLEKEKSAKQEELERLRRE-------KVDLENTLE  173 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------HHhHHHHHH
Confidence            3555556666666665555544320        0112345555555444444444444444332       222222222


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcc--hhchHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004893          408 LVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDE--RANLTLTKELESSLAKKEEFIEELESNLHA  485 (724)
Q Consensus       408 ~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l~~~~~e~~~~~~~~--~~~~~~~~~le~~l~~~~~~i~~Le~~l~~  485 (724)
                      .      .....+++|.+++..+..+...+...++.--....+.....  ....+....+.+-+..++..+..|..++..
T Consensus       174 ~------EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~  247 (310)
T PF09755_consen  174 Q------EQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAA  247 (310)
T ss_pred             H------HHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            1      35667999999999999999999999886322111110000  001122334555566666666666666644

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=88.88  E-value=25  Score=34.54  Aligned_cols=38  Identities=21%  Similarity=0.288  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 004893           82 YQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKG  119 (724)
Q Consensus        82 le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~  119 (724)
                      +..++..+...+..+..+...|..-...-...+....+
T Consensus        17 L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~   54 (194)
T PF15619_consen   17 LQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYED   54 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33333333333333333333333333333333333333

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=88.83  E-value=39  Score=40.21  Aligned_cols=32  Identities=9%  Similarity=0.152  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHchHHHHHHHH
Q 004893           97 EAERKKFRDQFLYAEQELAAAKGREGVLQEQL  128 (724)
Q Consensus        97 e~~~~~lq~~l~~le~el~~~~~~~~~l~er~  128 (724)
                      ..+++....++..+.+++..+......+.+|+
T Consensus       571 k~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~  602 (717)
T PF10168_consen  571 KQQKEQQLKELQELQEERKSLRESAEKLAERY  602 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333344444444444433333334433

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=88.66  E-value=50  Score=37.77  Aligned_cols=30  Identities=20%  Similarity=0.259  Sum_probs=15.0

Q ss_pred             hhHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004893           60 CRQMVKSDFLDALTNVEKQVRDYQSKLEEL   89 (724)
Q Consensus        60 ~~~~~~~~~~~~l~~~e~qi~~le~~l~~l   89 (724)
                      ++......+...+.++...+..+...+..+
T Consensus       106 sl~~e~a~lk~~l~e~~~El~~l~~~l~~l  135 (511)
T PF09787_consen  106 SLSSELAVLKIRLQELDQELRRLRRQLEEL  135 (511)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444445555555555555555555554

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=88.35  E-value=39  Score=36.15  Aligned_cols=49  Identities=14%  Similarity=0.185  Sum_probs=30.8

Q ss_pred             HHHhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 004893          395 AQLGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNE  443 (724)
Q Consensus       395 ~e~ek~~le~e~~~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l~~  443 (724)
                      +......+......+...++.+....+++......+..+...+++....
T Consensus       154 L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e  202 (325)
T PF08317_consen  154 LEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE  202 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3433444455555555556666667777777777777777777776665

>KOG2991 consensus Splicing regulator [RNA processing and modification]

Probab=88.05  E-value=31  Score=34.64  Aligned_cols=38  Identities=16%  Similarity=0.288  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 004893          226 NAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSST  263 (724)
Q Consensus       226 ~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~  263 (724)
                      .+...+...+..+--|+..+.+..+.+..+.+.+..+.
T Consensus       268 eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~s  305 (330)
T KOG2991|consen  268 ELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVS  305 (330)
T ss_pred             HHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444555555555555555555544443

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=87.93  E-value=71  Score=38.63  Aligned_cols=15  Identities=33%  Similarity=0.550  Sum_probs=10.1

Q ss_pred             CCCCCcceeeccCCCC
Q 004893           26 AGGSDRRLVIYEDPSP   41 (724)
Q Consensus        26 ~~~~~~~~~~~~~~~~   41 (724)
                      +.| ++.+++|++|..
T Consensus       602 ~yg-s~~v~~~~~~lk  616 (1072)
T KOG0979|consen  602 AYG-SRQVITRNDPLK  616 (1072)
T ss_pred             ccc-cceeeecCCcch
Confidence            445 667788887764

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=87.20  E-value=56  Score=36.65  Aligned_cols=53  Identities=19%  Similarity=0.368  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHhHHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 004893          334 MDQLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQM  388 (724)
Q Consensus       334 ~~~Le~el~~w~~~~~~~~~~~~~~~l~~~~~~Lq~e~~~l~~~~~~~~~~~~~l  388 (724)
                      ...++..+.+|...+.++.  +.-..+...+.+|+++-....+.+..+.+.+...
T Consensus       377 yS~lq~~l~~~~~~l~~i~--~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~ei  429 (570)
T COG4477         377 YSELQDNLEEIEKALTDIE--DEQEKVQEHLTSLRKDELEARENLERLKSKLHEI  429 (570)
T ss_pred             HHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555444321  0122233344444444444444444444444443

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=86.89  E-value=53  Score=36.05  Aligned_cols=36  Identities=17%  Similarity=0.254  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHch
Q 004893           85 KLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGR  120 (724)
Q Consensus        85 ~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~  120 (724)
                      -+..|+....+.+..+..|+-.-..|+..+..++..
T Consensus       318 vL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k  353 (527)
T PF15066_consen  318 VLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMK  353 (527)
T ss_pred             HHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHH
Confidence            344555555556666666666666666666666654

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=86.76  E-value=8  Score=38.05  Aligned_cols=66  Identities=20%  Similarity=0.237  Sum_probs=11.5

Q ss_pred             hHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHH
Q 004893           61 RQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQE  126 (724)
Q Consensus        61 ~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~e  126 (724)
                      .......+..++..+-+...++...+..+...+..++.........+..+..++..+..++..+.+
T Consensus        72 le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~  137 (194)
T PF08614_consen   72 LEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEE  137 (194)
T ss_dssp             ------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444555555555555555555555555555555555555555555555555444444443333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=86.37  E-value=15  Score=39.10  Aligned_cols=64  Identities=22%  Similarity=0.311  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchhchHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893          417 KSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEFIEELESNLHAQQE  488 (724)
Q Consensus       417 ~~~~~rLek~~~~~~~er~~lr~~l~~~~~e~~~~~~~~~~~~~~~~~le~~l~~~~~~i~~Le~~l~~~~~  488 (724)
                      ...+..++.+...+.++++.+...+........        ....+..+..++..++.+...+..+|..+..
T Consensus         8 ~~l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~--------~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~   71 (314)
T PF04111_consen    8 DLLLEQLDKQLEQAEKERDTYQEFLKKLEEESD--------SEEDIEELEEELEKLEQEEEELLQELEELEK   71 (314)
T ss_dssp             ------------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334566667777777888888777776542111        1123344444555555555555444444433

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=85.87  E-value=45  Score=34.22  Aligned_cols=72  Identities=18%  Similarity=0.270  Sum_probs=43.6

Q ss_pred             HhcceEEeccccc-cCCc--cceeEEE--eecccCCCCC--eeEEeecCCceeeccCCCCChhhhHHHHHHHhhhcCCcc
Q 004893          635 LFGYKIVMDEHQR-ANGI--PVTHFTL--QSIYAQGDDE--KLEFEYESSNTNIMVNDYTSQPEISRQVDIFVRKMNSIP  707 (724)
Q Consensus       635 l~Gy~i~~~~~~~-~~g~--~~~~~~l--~s~y~~~~~~--~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip  707 (724)
                      =+|+.|+.-.... -||-  .++.++|  .+.|+.++|.  +-+|++..|+-.-++..|.  ..|...|..+  .+...|
T Consensus       163 ~yg~~i~~~~~~i~~dG~~~~V~~LrlGr~~l~~~t~Dg~~~g~~~~~~~~W~~l~~~~~--~~i~~ai~ia--~kq~~~  238 (251)
T PF11932_consen  163 EYGRTIEVYQGTITLDGEERQVDFLRLGRVALYYQTLDGSQAGVWDPATGQWQWLPDSYR--REIRKAIRIA--RKQRAP  238 (251)
T ss_pred             HhCCceeEEEEEEeECCeEEEEEEEeecchhheeECCCccceeeecCCCCCCeECCHHHH--HHHHHHHHHH--hCCCCc
Confidence            3688888755422 2552  2333333  4566666654  6677777777777766555  5677776654  556666


Q ss_pred             hhh
Q 004893          708 AFT  710 (724)
Q Consensus       708 ~fl  710 (724)
                      .|+
T Consensus       239 ~l~  241 (251)
T PF11932_consen  239 ELL  241 (251)
T ss_pred             HHh
Confidence            664

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.78  E-value=66  Score=36.07  Aligned_cols=28  Identities=14%  Similarity=0.216  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893          504 LNNEERRIKSLERENDRLRSEISLLESK  531 (724)
Q Consensus       504 l~~l~~~i~~Le~e~~~l~~e~~~Le~~  531 (724)
                      +...+..+-.+..++..+-.-+...+.+
T Consensus       480 l~~A~~~lv~~SdeLaqlyh~vc~~n~e  507 (772)
T KOG0999|consen  480 LVNAQDELVTFSDELAQLYHHVCECNNE  507 (772)
T ss_pred             chhhhHhHhhhhHHHHHHHHHHHHHcCC
Confidence            3445566666666666666655555544

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=85.62  E-value=48  Score=34.30  Aligned_cols=18  Identities=28%  Similarity=0.501  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 004893          232 EMLKNQMKDLKEQLNECL  249 (724)
Q Consensus       232 ~~L~~el~el~~~l~e~~  249 (724)
                      ......|.+++..+.++.
T Consensus       188 ~~~~~kL~Dl~~~l~eA~  205 (264)
T PF06008_consen  188 NDYNAKLQDLRDLLNEAQ  205 (264)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333444444443333

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=85.44  E-value=32  Score=32.19  Aligned_cols=52  Identities=31%  Similarity=0.475  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHH
Q 004893           77 KQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQL  128 (724)
Q Consensus        77 ~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er~  128 (724)
                      .....+...+..+...+..+...+..+..++..++.++.....+...+...+
T Consensus        52 ~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~  103 (151)
T PF11559_consen   52 EQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQL  103 (151)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555555555555555555666665555555555555544444433

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=84.47  E-value=40  Score=32.49  Aligned_cols=118  Identities=20%  Similarity=0.234  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----
Q 004893          319 RVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDA----  394 (724)
Q Consensus       319 ~~E~~~~~~~~le~~~~~Le~el~~w~~~~~~~~~~~~~~~l~~~~~~Lq~e~~~l~~~~~~~~~~~~~le~~~~~----  394 (724)
                      ..+..+-++..++.++..++..+..+....+..    .    .-.+.+|+.++..+..++.+-..++..+......    
T Consensus         7 ~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L----~----~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~   78 (177)
T PF13870_consen    7 EISKLRLKNITLKHQLAKLEEQLRQKEELGEGL----H----LIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQI   78 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc----c----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455556777777888888888777653221    1    2235678889999999998888888887765432    


Q ss_pred             HHHhh---hhhHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Q 004893          395 AQLGK---QSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEF  444 (724)
Q Consensus       395 ~e~ek---~~le~e~~~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l~~~  444 (724)
                      +.--+   ..+..+...+..++......+.++...+..+..+++.++.....+
T Consensus        79 L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l  131 (177)
T PF13870_consen   79 LTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKL  131 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111   222334444444444455555555555555555555555555544

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.42  E-value=68  Score=35.10  Aligned_cols=25  Identities=16%  Similarity=0.307  Sum_probs=15.6

Q ss_pred             CCcceeeccCCCCCCCCCCCCCCCc
Q 004893           29 SDRRLVIYEDPSPAGRESSHQPSDH   53 (724)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~   53 (724)
                      +|--.+.-|||.+++.+....|.+.
T Consensus       204 ~df~f~~t~dPa~p~~p~~~~pass  228 (521)
T KOG1937|consen  204 KDFNFKLTDDPALPPKPIFAKPASS  228 (521)
T ss_pred             ccccceecCCCCCCCccccCCCccc
Confidence            4555778888887555555544443

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=84.27  E-value=20  Score=35.16  Aligned_cols=37  Identities=22%  Similarity=0.361  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893           81 DYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAA  117 (724)
Q Consensus        81 ~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~  117 (724)
                      ++...+..++.++.+...+...+.+.+..++.+++..
T Consensus       132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~  168 (290)
T COG4026         132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEV  168 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555555555555555544444444433

>PRK04863 mukB cell division protein MukB; Provisional

Probab=84.17  E-value=1.5e+02  Score=38.68  Aligned_cols=19  Identities=11%  Similarity=0.219  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHHHhHHhh
Q 004893          330 VQQSMDQLEDELSSWKFLI  348 (724)
Q Consensus       330 le~~~~~Le~el~~w~~~~  348 (724)
                      +.-.+.+++.-......++
T Consensus       805 ~~~~~~~~~r~~~~~~~~~  823 (1486)
T PRK04863        805 LSFDVQKLQRLHQAFSRFI  823 (1486)
T ss_pred             HhhhHHHHHHHHHHHHHHH
Confidence            3333444444444444443

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=83.99  E-value=20  Score=34.37  Aligned_cols=64  Identities=28%  Similarity=0.459  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893          504 LNNEERRIKSLERENDRLRSEISLLESKLGHGDFSSENTKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQAVEE  580 (724)
Q Consensus       504 l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~~~~~~~~~~ril~l~~n~~~~~~~~~~l~~l~~E~~~L~~~l~~l~~  580 (724)
                      +..+..++..|..++..+...+..|..++.            .|...|... +....+..|..|+..|..++..+..
T Consensus        74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~------------~L~~~~t~~-el~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen   74 LAELDAEIKELREELAELKKEVKSLEAELA------------SLSSEPTNE-ELREEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHhcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444445555555555555555555443            123334432 2578899999999999999998874

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=83.59  E-value=88  Score=35.71  Aligned_cols=32  Identities=22%  Similarity=0.248  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893          226 NAEKESEMLKNQMKDLKEQLNECLNQKSEVEK  257 (724)
Q Consensus       226 ~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~  257 (724)
                      .++.....-..++..++.++.+...++..+..
T Consensus       228 qye~klkstk~e~a~L~Eq~~eK~~e~~rl~~  259 (861)
T KOG1899|consen  228 QYETKLKSTKGEMAPLREQRSEKNDEEMRLLR  259 (861)
T ss_pred             HHHhhcccccchhhhHHHHHhhhhhHHHHHHH
Confidence            34455555666666666666666665544443

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=83.41  E-value=89  Score=35.65  Aligned_cols=27  Identities=7%  Similarity=0.060  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHchHHHHHH
Q 004893          100 RKKFRDQFLYAEQELAAAKGREGVLQE  126 (724)
Q Consensus       100 ~~~lq~~l~~le~el~~~~~~~~~l~e  126 (724)
                      ++.--++|..++.-++.-...+++..+
T Consensus       134 VeaQgEKIrDLE~cie~kr~kLnatEE  160 (861)
T KOG1899|consen  134 VEAQGEKIRDLETCIEEKRNKLNATEE  160 (861)
T ss_pred             HHHhhhhHHHHHHHHHHHHhhhchHHH
Confidence            333333444444444433333333333

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=83.26  E-value=69  Score=34.30  Aligned_cols=57  Identities=23%  Similarity=0.251  Sum_probs=27.1

Q ss_pred             hHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893           61 RQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAA  117 (724)
Q Consensus        61 ~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~  117 (724)
                      +.+++.-+..++...+.+....+.+.+..+.++.+.-.+.+..+.+...+.+++...
T Consensus        79 i~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kA  135 (499)
T COG4372          79 IRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKA  135 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444455555555555555444444455444444444444444444444333

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=83.14  E-value=90  Score=35.51  Aligned_cols=32  Identities=22%  Similarity=0.206  Sum_probs=19.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 004893          360 IPVKFAALQKEVIDSMMKLGEANAQLKQMEVA  391 (724)
Q Consensus       360 l~~~~~~Lq~e~~~l~~~~~~~~~~~~~le~~  391 (724)
                      +...+..+..+......++..+.+.+..++..
T Consensus       202 ~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~  233 (498)
T TIGR03007       202 YYSEISEAQEELEAARLELNEAIAQRDALKRQ  233 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555666666666666666666666665543

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=82.02  E-value=77  Score=33.96  Aligned_cols=48  Identities=27%  Similarity=0.309  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893           70 DALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAA  117 (724)
Q Consensus        70 ~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~  117 (724)
                      .+++.+..++..+..++.....+....+.+.+..+.++...-.+.+..
T Consensus        74 fqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v  121 (499)
T COG4372          74 FQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAV  121 (499)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555555555555555555554444444433333

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=81.46  E-value=67  Score=32.87  Aligned_cols=45  Identities=16%  Similarity=0.314  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHch
Q 004893           76 EKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGR  120 (724)
Q Consensus        76 e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~  120 (724)
                      +....+++..+..+..+.......+...+..+..|..+.......
T Consensus         4 Er~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeee   48 (246)
T PF00769_consen    4 EREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEE   48 (246)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555555555555555555555555555554444444433

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=81.34  E-value=91  Score=34.33  Aligned_cols=25  Identities=20%  Similarity=0.301  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893          311 LEEKSRRERVEQELAKLREVQQSMD  335 (724)
Q Consensus       311 ~~lq~kl~~~E~~~~~~~~le~~~~  335 (724)
                      .+.++..+.+|....++..+.-.+.
T Consensus       403 leaq~~~~slek~~~~~~sl~~~i~  427 (622)
T COG5185         403 LEAQGIFKSLEKTLRQYDSLIQNIT  427 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3445555556666555555544433

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=80.75  E-value=62  Score=32.01  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHhhhHhHHHHHH
Q 004893          191 EKKRLNNEVTQLKRESKSSISR  212 (724)
Q Consensus       191 e~~~L~~~l~~L~~e~~~~~~~  212 (724)
                      .+.+++.+...|...+...+.+
T Consensus       115 r~~kle~ErdeL~~kf~~~i~e  136 (201)
T PF13851_consen  115 RFEKLEQERDELYRKFESAIQE  136 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555555554433

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=80.69  E-value=1e+02  Score=35.91  Aligned_cols=37  Identities=16%  Similarity=0.336  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhh
Q 004893          229 KESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQ  265 (724)
Q Consensus       229 ~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e  265 (724)
                      ..+..|..++..++++++++...+..+....+.|-.+
T Consensus       216 e~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e  252 (916)
T KOG0249|consen  216 EDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGE  252 (916)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            3445566666666666666665555555555544433

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=80.37  E-value=37  Score=36.16  Aligned_cols=32  Identities=25%  Similarity=0.474  Sum_probs=0.0

Q ss_pred             HhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893           59 QCRQMVKSDFLDALTNVEKQVRDYQSKLEELN   90 (724)
Q Consensus        59 ~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~   90 (724)
                      .|-...+..+..++.....+...|..=+..+.
T Consensus         5 eC~~~l~~~l~~~~~~~~~E~~~Y~~fL~~l~   36 (314)
T PF04111_consen    5 ECTDLLLEQLDKQLEQAEKERDTYQEFLKKLE   36 (314)
T ss_dssp             --------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35555566666666666666666665555554

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=80.22  E-value=82  Score=33.10  Aligned_cols=6  Identities=50%  Similarity=0.739  Sum_probs=2.2

Q ss_pred             HHHHHH
Q 004893          194 RLNNEV  199 (724)
Q Consensus       194 ~L~~~l  199 (724)
                      +|.+++
T Consensus       166 ~LnrEL  171 (401)
T PF06785_consen  166 TLNREL  171 (401)
T ss_pred             HHHHHH
Confidence            333333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	724
4dzo_A	123	Structure Of Human Mad1 C-Terminal Domain Reveals I		4e-10

>pdb|4DZO|A Chain A, Structure Of Human Mad1 C-Terminal Domain Reveals Its Involvement In Kinetochore Targeting Length = 123

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 77/132 (58%), Gaps = 15/132 (11%)
Query: 597 SGKITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKI-VMDEHQRANGIPVTH 655
           S ++ +LK+Q+ + E + +R K VF  +I  FR+AC  L GY+I +  E+Q         
Sbjct: 3   SKEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACYTLTGYQIDITTENQ--------- 53
Query: 656 FTLQSIYAQGDDEKLEFEYES---SNTNIMVNDYTSQPEISRQVDIFVRKMNSIPAFTAN 712
           + L S+YA+   + L F+  S   S   ++  +++    +   +++ +R+ +SIPAF ++
Sbjct: 54  YRLTSLYAEHPGDCLIFKATSPSGSKXQLLETEFSHT--VGELIEVHLRRQDSIPAFLSS 111
Query: 713 LTVESFNRRTLS 724
           LT+E F+R+T++
Sbjct: 112 LTLELFSRQTVA 123

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	724
4dzo_A	123	Mitotic spindle assembly checkpoint protein MAD1;	1e-26
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-17
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-16
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-12
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-05
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	2e-09
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	2e-04
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-07
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	7e-06
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	8e-07
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	3e-04
3ghg_C	411	Fibrinogen gamma chain; triple-stranded coiled coi	9e-04

>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens} Length = 123

 Score =  104 bits (260), Expect = 1e-26
 Identities = 39/129 (30%), Positives = 73/129 (56%), Gaps = 9/129 (6%)

Query: 597 SGKITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKIVMDEHQRANGIPVTHF 656
           S ++ +LK+Q+ + E + +R K VF  +I  FR+AC  L GY+I +    +        +
Sbjct: 3   SKEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACYTLTGYQIDITTENQ--------Y 54

Query: 657 TLQSIYAQGDDEKLEFEYESSNTNIMVNDYTS-QPEISRQVDIFVRKMNSIPAFTANLTV 715
            L S+YA+   + L F+  S + + M    T     +   +++ +R+ +SIPAF ++LT+
Sbjct: 55  RLTSLYAEHPGDCLIFKATSPSGSKMQLLETEFSHTVGELIEVHLRRQDSIPAFLSSLTL 114

Query: 716 ESFNRRTLS 724
           E F+R+T++
Sbjct: 115 ELFSRQTVA 123

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 84.1 bits (208), Expect = 8e-17
 Identities = 67/306 (21%), Positives = 128/306 (41%), Gaps = 30/306 (9%)

Query: 59   QCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAK 118
            + RQ      L  L     Q+ + ++ L+E  +  ++  AE ++ R +    +QEL    
Sbjct: 870  KERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEIL 929

Query: 119  GREGVLQEQLLKEVDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLE 178
                   E+  +     +   KK  Q   +LE +   E   R+K +    +A+ K   +E
Sbjct: 930  HEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKME 989

Query: 179  GKLTHLSDSI---EREKKRL-----------------NNEVTQLKRESKSSISRIGADLE 218
              +  + D      +E+K L                    +T+LK + +S IS +   L+
Sbjct: 990  DDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLK 1049

Query: 219  KMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKH 278
            K E   Q  EK    L+ +  DL EQ+ E   Q +E++ +L+          +    +  
Sbjct: 1050 KEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEE------ELQAALAR 1103

Query: 279  LQEEIRNYEAEVREARKLKASYENTELLKEKLLEEKSRRERVEQELAKL-REVQQSMDQL 337
            L++E       +++ R+L++   +   L+E L  EK+ R + E++   L  E++    +L
Sbjct: 1104 LEDETSQKNNALKKIRELESHISD---LQEDLESEKAARNKAEKQKRDLSEELEALKTEL 1160

Query: 338  EDELSS 343
            ED L +
Sbjct: 1161 EDTLDT 1166

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 81.8 bits (202), Expect = 4e-16
 Identities = 57/362 (15%), Positives = 145/362 (40%), Gaps = 36/362 (9%)

Query: 223  RAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEE 282
            +    E+E +    +++  KE+  +   +  E+E+K +    +             LQE+
Sbjct: 851  KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEE----------KNLLQEK 900

Query: 283  IRNYEAEVREARKLKASYENTELLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELS 342
            ++       EA +++      +   E++L E     R+E+E  + +++Q    +++ ++ 
Sbjct: 901  LQAETELYAEAEEMRVRLAAKKQELEEILHEM--EARIEEEEERSQQLQAEKKKMQQQML 958

Query: 343  SWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSA 402
              +  +         E+       LQ E + +  K+ +    +  ME   +     ++  
Sbjct: 959  DLEEQL---------EEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLL 1009

Query: 403  ETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLT 462
            E   + +       + + K +  + +       +L   + + +K + +    E+      
Sbjct: 1010 EERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQE---LEKIK---- 1062

Query: 463  KELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLR 522
            ++LE   +   E I EL++ +   +   +++ +E+++   +L +E  +  +  ++   L 
Sbjct: 1063 RKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELE 1122

Query: 523  SEISLLESKLGHGDFSSENTKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQAVEELK 582
            S IS L+  L      SE     +         +  + +EAL+TEL+ T +     +EL+
Sbjct: 1123 SHISDLQEDL-----ESEKAARNKAEKQKR---DLSEELEALKTELEDTLDTTATQQELR 1174

Query: 583  SQ 584
              
Sbjct: 1175 GS 1176

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 76.8 bits (189), Expect = 1e-14
 Identities = 76/432 (17%), Positives = 153/432 (35%), Gaps = 108/432 (25%)

Query: 73   TNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQLLKEV 132
            T  E++++    +L+   E   KAEAE K+   +     +E         +LQE+L  E 
Sbjct: 853  TRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKN-------LLQEKLQAET 905

Query: 133  D---DSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLSDSIE 189
            +   ++ E   +      ELE           + E  +   + +   ++ ++  L + +E
Sbjct: 906  ELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLE 965

Query: 190  REKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECL 249
             E+         L+ E  ++  +I    +KME      E ++  L  + K L+E++++  
Sbjct: 966  EEEAARQK----LQLEKVTADGKI----KKMEDDILIMEDQNNKLTKERKLLEERVSDLT 1017

Query: 250  NQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREARKLKASYENTELLKEK 309
               +E E+K                  K+L +    +E+ + E             L+ +
Sbjct: 1018 TNLAEEEEK-----------------AKNLTKLKNKHESMISE-------------LEVR 1047

Query: 310  LLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQK 369
            L +E+  R+ +E+   KL          E E                  D+  + A LQ 
Sbjct: 1048 LKKEEKSRQELEKIKRKL----------EGES----------------SDLHEQIAELQA 1081

Query: 370  EVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKRIESMLSV 429
            ++ +   +L +   +L+     L+     K +       +K+  E+ +S +  ++  L  
Sbjct: 1082 QIAELKAQLAKKEEELQAALARLEDETSQKNN------ALKKIREL-ESHISDLQEDLES 1134

Query: 430  VTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEFIEELE---SNLHAQ 486
                R+K                  E+    L++ELE           ELE        Q
Sbjct: 1135 EKAARNKA-----------------EKQKRDLSEELE-------ALKTELEDTLDTTATQ 1170

Query: 487  QEINSRQRDEIK 498
            QE+      +  
Sbjct: 1171 QELRGSDYKDDD 1182

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 71.8 bits (175), Expect = 6e-13
 Identities = 89/626 (14%), Positives = 195/626 (31%), Gaps = 180/626 (28%)

Query: 35  IYEDPSPAGRESSHQPSDHL---LCTYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNE 91
           I               +  L   L + Q  +MV+  F++ +        +Y+  +  +  
Sbjct: 54  IIMSKDAVSG------TLRLFWTLLSKQ-EEMVQ-KFVEEVLR-----INYKFLMSPIKT 100

Query: 92  NFSKAEAERKKFRDQF--LYAEQELAAAKGREGVLQEQLLKEVDDSRERLK--------- 140
              +     + + +Q   LY + ++ A   +  V + Q   ++  +   L+         
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFA---KYNVSRLQPYLKLRQALLELRPAKNVLIDG 157

Query: 141 -----KQ---IQLCSELEAKHRNE-----LNLRRKAESAAASAEEKASL---LEGKLTHL 184
                K    + +C   + + + +     LNL+    S     E    L   ++   T  
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC-NSPETVLEMLQKLLYQIDPNWTSR 216

Query: 185 SDSIEREKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQ 244
           SD     K R+++   +L+R                            +LK++       
Sbjct: 217 SDHSSNIKLRIHSIQAELRR----------------------------LLKSK------P 242

Query: 245 LNECLNQKSEVEKKLSSSTFQEFS-------TT-DSNIL-------VKHLQEEIRNYEAE 289
              CL     V+   ++  +  F+       TT    +          H+  +  +    
Sbjct: 243 YENCLLVLLNVQ---NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 290 VREARKLKASYENTE-----------------LLKEKLLEEKSRRERVEQ-ELAKLREV- 330
             E + L   Y +                   ++ E + +  +  +  +     KL  + 
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 331 QQSMDQLE-DELSS--WKFLI-RDIPGVSCSEDIPVK-FAALQKEVIDSMMKLGEANAQL 385
           + S++ LE  E      +  +         S  IP    + +  +VI S           
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPP------SAHIPTILLSLIWFDVIKS----------- 402

Query: 386 KQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKL----RNVV 441
              +V +   +L K S      LV+++    K     I S+   +  + +      R++V
Sbjct: 403 ---DVMVVVNKLHKYS------LVEKQ---PKESTISIPSIYLELKVKLENEYALHRSIV 450

Query: 442 NEFKKPKNDGGGDERANLT-----------LTKELESSLAKKEEFIEELESNLH-AQQEI 489
           + +  PK     D                 L K +E    ++      +  +    +Q+I
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL-KNIE--HPERMTLFRMVFLDFRFLEQKI 507

Query: 490 -----NSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLGHGDFSSENTKV 544
                       I +  ++L   +  I   + + +RL + I     K+      S+ T +
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567

Query: 545 LRMVNTLAVDNEAKQTIEALQTELQK 570
           LR    +A+  E +   E    ++Q+
Sbjct: 568 LR----IALMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 67.2 bits (163), Expect = 1e-11
 Identities = 73/475 (15%), Positives = 150/475 (31%), Gaps = 135/475 (28%)

Query: 335 DQLEDELSSWK--FLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVAL 392
           D L     ++   F  +D+      +D+P   + L KE ID ++   +A +   ++   L
Sbjct: 20  DILSVFEDAFVDNFDCKDV------QDMPK--SILSKEEIDHIIMSKDAVSGTLRLFWTL 71

Query: 393 DAAQLGKQSAETEAALVKEKEEVS--------KSEVKRIESMLSVVTEERDKLRNVVNEF 444
               L KQ  E     V+E   ++        K+E ++   M  +  E+RD+L N    F
Sbjct: 72  ----LSKQE-EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 445 KK---PKNDGGGDERANLTLTKELE------------------SSLA------------- 470
            K    +       +  L L + L                   + +A             
Sbjct: 127 AKYNVSR------LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 471 -------------KKEEFIEELESNLHAQQEINSRQR-DEIKSLSEKLNNEERRIKSLER 516
                          E  +E L+  L  Q + N   R D   ++  ++++ +  ++ L +
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQ-KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 517 ENDRLRSEISLL-------ESKLGHGDFSSENTKVL---R---MVNTLAVDNEAKQTIEA 563
                     LL              + S    K+L   R   + + L+       +++ 
Sbjct: 240 SKPYEN---CLLVLLNVQNAKAWNAFNLSC---KILLTTRFKQVTDFLSAATTTHISLDH 293

Query: 564 LQTELQKTK-EKLQA------VEELKSQSGDTGKLVDSYISGKITQLKEQIATLEKREER 616
               L   + + L         ++L  +   T     S I+     +++ +AT     + 
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA---ESIRDGLATW----DN 346

Query: 617 YKTVFADRISVFRRACCELFGYKIVMDEHQRA--------NGIPVTHFTLQSIYAQGDDE 668
           +K V  D+++    +        +   E+++             +    L  I+      
Sbjct: 347 WKHVNCDKLTTIIESSLN----VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402

Query: 669 KLEFEYESSNTNIMVNDYTSQPEISRQVDIFVRKMNSIPAFTANLTVESFNRRTL 723
            +          ++VN       + +Q         SIP+    L V+  N   L
Sbjct: 403 DVM---------VVVNKLHKYSLVEKQPKESTI---SIPSIYLELKVKLENEYAL 445

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 70.5 bits (173), Expect = 1e-12
 Identities = 44/275 (16%), Positives = 97/275 (35%), Gaps = 23/275 (8%)

Query: 70   DALTNVEKQVRDYQS--KLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQ 127
             A   ++K  R Y    + + + +     +A  + +         +          +  Q
Sbjct: 817  RAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYL-----VRNKYQMMLREHKSIIIQ 871

Query: 128  LLKEVDDSRERLKKQ------IQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKL 181
                   +R    +       +Q C       R    L+ +A S     +    L E K+
Sbjct: 872  KHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGL-ENKI 930

Query: 182  THLSDSIEREKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQNAEKESEMLKNQMKDL 241
              L   I+ + K     + +     + + S     L     R + +E+E++   N++  L
Sbjct: 931  MQLQRKIDEQNKE-YKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSL 989

Query: 242  KEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNI--LVKHLQEEIRNYEAEVREARKLKAS 299
            +E++ +   +  + + +  +   +           LV  L+E+    + E  E  +    
Sbjct: 990  QEEIAKLRKELHQTQTEKKTIE-EWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHD 1048

Query: 300  Y--ENTELLKEKLLEEKSRRERVEQELAKLREVQQ 332
               E TE +++KL+EE    +++E +L   R   Q
Sbjct: 1049 QAKEITETMEKKLVEET---KQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 62.4 bits (152), Expect = 4e-10
 Identities = 33/240 (13%), Positives = 87/240 (36%), Gaps = 33/240 (13%)

Query: 276  VKHLQEEIRNYEAEVREARKLKASYENTELLKEKLLEEKSRRERVEQELAKLREVQQSMD 335
               +Q+ +R + A V   R LKA        +  + + + ++ ++E     +   ++   
Sbjct: 867  SIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEAR--SVERYKKLHI 924

Query: 336  QLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAA 395
             LE+++                         LQ+++ +   +      ++  +E+     
Sbjct: 925  GLENKIMQ-----------------------LQRKIDEQNKEYKSLLEKMNNLEITYSTE 961

Query: 396  QLGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDE 455
                +S      + +E+ + + + V  ++  ++ + +E  + +      ++  +     +
Sbjct: 962  TEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADK---YK 1018

Query: 456  RANLTLTKELESSLAKKEEFIEELESNLHAQ-----QEINSRQRDEIKSLSEKLNNEERR 510
                 L  EL+      +   EEL   +H Q     + +  +  +E K L   LN+E  R
Sbjct: 1019 HETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLR 1078

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 62.0 bits (151), Expect = 5e-10
 Identities = 29/223 (13%), Positives = 79/223 (35%), Gaps = 19/223 (8%)

Query: 365  AALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAALVKEKEEVSKSEVKRIE 424
              ++  +               Q       A+   +  + EA  V+  +++      +I 
Sbjct: 872  KHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIM 931

Query: 425  SMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEFIEELESNLH 484
             +   + E+  + ++++ +    +                    L    E +   E    
Sbjct: 932  QLQRKIDEQNKEYKSLLEKMNNLEIT-----------YSTETEKLRSDVERLRMSEEEAK 980

Query: 485  AQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLGHGDFSSENTKV 544
                     ++EI  L ++L+  +   K++E   D+ + E   L S+L       +NT +
Sbjct: 981  NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSEL-----KEQNTLL 1035

Query: 545  LRMVNTL--AVDNEAKQTIEALQTELQKTKEKLQA-VEELKSQ 584
                  L   + ++AK+  E ++ +L +  ++L+  + + + +
Sbjct: 1036 KTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLR 1078

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 26/161 (16%), Positives = 59/161 (36%), Gaps = 24/161 (14%)

Query: 65   KSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVL 124
                L+ + N+E        KL    E    +E E K   ++ L  ++E+A         
Sbjct: 944  YKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIA--------- 994

Query: 125  QEQLLKEVDDSRERLKKQIQLCSELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHL 184
                  ++     + + + +   E   K+++E       E   +  +E+ +LL+ +   L
Sbjct: 995  ------KLRKELHQTQTEKKTIEEWADKYKHET------EQLVSELKEQNTLLKTEKEEL 1042

Query: 185  SDSIEREKKRLNNEVTQLKRESKSSISRIGADLEKMECRAQ 225
            +  I  + K +      ++++      ++  DL     R Q
Sbjct: 1043 NRRIHDQAKEITET---MEKKLVEETKQLELDLNDERLRYQ 1080

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 60.3 bits (146), Expect = 2e-09
 Identities = 44/311 (14%), Positives = 96/311 (30%), Gaps = 38/311 (12%)

Query: 228  EKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYE 287
            E    +         E +   L       +    S+      T     ++ L+ + R   
Sbjct: 1832 ENPQYIAPPVFIQEAEIMGNNLMAIPPSHRDAVVSSLVYIHQTIGEANIRLLKRQGRQNY 1891

Query: 288  AEVREARKLKASYENTELLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFL 347
               R             L+ EK  + +  +  +   L KLR+ +  +  L+  L      
Sbjct: 1892 VTPRHYLDFINQVVL--LINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSL------ 1943

Query: 348  IRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAA 407
                             A   +E+        +AN +LKQM     AA++ ++ A     
Sbjct: 1944 -----------------AQKNRELDVKNE---QANQKLKQMVQDQQAAEIKQKDARELQV 1983

Query: 408  LVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELES 467
             +  + +    +  +  + L    E    LR  V + +   N+     +       E+ +
Sbjct: 1984 QLDVRNKEIAVQKVKAYADLEKA-EPTGPLREEVEQLENAANE----LKLKQ---DEIVA 2035

Query: 468  SLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISL 527
            ++   E+ I   +           + + E   +  K++     + +L  E  R   +   
Sbjct: 2036 TITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSEN 2095

Query: 528  LESKLGH--GD 536
              +++    GD
Sbjct: 2096 FNTQMSTVVGD 2106

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 35/269 (13%), Positives = 75/269 (27%), Gaps = 25/269 (9%)

Query: 101  KKFRDQFLYAEQELAAAKGREGVLQEQLLKEVDDSRERLKKQIQLCSEL-----EAKHRN 155
             +F         +  A        +      +          +     +     EA  R 
Sbjct: 1823 SEFTRNLDLENPQYIAPPVFIQEAEIMGNNLMAIPPSHRDAVVSSLVYIHQTIGEANIRL 1882

Query: 156  ELNLRRKAESAAASAEEKASLLEGKLTHLSDSIEREKKRLNNEVTQLKRESKSSISRIGA 215
                 R+         +  + +   +    D +E E+  LN  + +L R++++ +  +  
Sbjct: 1883 LKRQGRQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKL-RDTEAQVKDLQV 1941

Query: 216  DL------------------EKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEK 257
             L                  ++M    Q AE + +  +     L  +  E   QK +   
Sbjct: 1942 SLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYA 2001

Query: 258  KLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREARKLKASYENTELLKEKLLEEKSR- 316
             L  +        +   L     E     +  V     L+ S    +     L+ E  + 
Sbjct: 2002 DLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQI 2061

Query: 317  RERVEQELAKLREVQQSMDQLEDELSSWK 345
            +    +   K+      +D L  E   W+
Sbjct: 2062 KTESSKVKNKVDRSIALLDNLNSERGRWE 2090

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 53.9 bits (130), Expect = 2e-07
 Identities = 28/176 (15%), Positives = 67/176 (38%), Gaps = 3/176 (1%)

Query: 412  KEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAK 471
                +K  + + E  ++      +++ +  +  +K + +     R  L   K++   L K
Sbjct: 831  NSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQK 890

Query: 472  KEEFIEELES--NLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLE 529
                +++LE+     +    ++   D I ++  KL N E      +    +  S++  + 
Sbjct: 891  YNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSIL 950

Query: 530  SKLGHGDFSSENTKVLRMVNTLA-VDNEAKQTIEALQTELQKTKEKLQAVEELKSQ 584
            ++L   +++       R     A      K + E  +  L    E+LQ +E+L   
Sbjct: 951  AQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHH 1006

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 48.5 bits (116), Expect = 7e-06
 Identities = 20/170 (11%), Positives = 49/170 (28%), Gaps = 6/170 (3%)

Query: 94   SKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQLLKEVDDSRERLKKQIQLCSELEA-- 151
             + +    K       A             L++   +  +  R  LK+Q ++   L+   
Sbjct: 833  LQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYN 892

Query: 152  ---KHRNELNLRRKAESAAASAEEKASLLEGKLTHLSDSIEREKKRLNNEVTQLKRESKS 208
               K        +     +    +  + ++ KL +L       +       + L      
Sbjct: 893  RILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQ 952

Query: 209  -SISRIGADLEKMECRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEK 257
             +        E  E +     ++   +K+  +  K  L   L +  ++E 
Sbjct: 953  LTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIED 1002

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 51.6 bits (124), Expect = 8e-07
 Identities = 28/169 (16%), Positives = 67/169 (39%), Gaps = 3/169 (1%)

Query: 416 SKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEF 475
           +K  + + E  ++      +++ +  +  +K + +     R  L   K++   L K    
Sbjct: 827 TKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRI 886

Query: 476 IEELES--NLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLG 533
           +++LE+     +    ++   D I ++  KL N E      +    +  S++  + ++L 
Sbjct: 887 LKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLT 946

Query: 534 HGDFSSENTKVLRMVNTLAVDNEA-KQTIEALQTELQKTKEKLQAVEEL 581
             +++       R     A      K + E  +  L    E+LQ +E+L
Sbjct: 947 ELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDL 995

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 17/145 (11%), Positives = 51/145 (35%), Gaps = 3/145 (2%)

Query: 194 RLNNEVTQLKRESKSSISRIGADL-EKMECRAQN-AEKESEMLKNQMKDLKEQLNECLNQ 251
           +++ +    K +    +      +  K     Q   E+ +     ++  + E+++  +  
Sbjct: 120 KIDGKTVSYK-DYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQY 178

Query: 252 KSEVEKKLSSSTFQEFSTTDSNILVKHLQEEIRNYEAEVREARKLKASYENTELLKEKLL 311
           K E E+          S T+S    + +  E++ Y++   E           +  + +  
Sbjct: 179 KKEYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFE 238

Query: 312 EEKSRRERVEQELAKLREVQQSMDQ 336
              +  E+++ E  K+      + +
Sbjct: 239 VINNETEQLKAEEKKILNQFLKIKK 263

>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C Length = 411

 Score = 41.4 bits (97), Expect = 9e-04
 Identities = 20/187 (10%), Positives = 60/187 (32%), Gaps = 31/187 (16%)

Query: 465 LESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSE 524
           L+            +   L   Q    +    ++ +  ++ N+   +K L +    ++  
Sbjct: 11  LDERFGSYCPTTCGIADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKA---IQLT 67

Query: 525 ISLLESKLGHGDFSSENTKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQAVEELKSQ 584
            +  ES        +           +       + I   +  +      ++ ++E+ + 
Sbjct: 68  YNPDESSK-----PNMIDAATLKSRKM------LEEIMKYEASILTHDSSIRYLQEIYNS 116

Query: 585 SGDTGKLVDSYISGKITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKIVMDE 644
           +           + KI  LKE++A LE + +           +  + C ++       ++
Sbjct: 117 N-----------NQKIVNLKEKVAQLEAQCQEPCKDTVQIHDITGKDCQDIA------NK 159

Query: 645 HQRANGI 651
             + +G+
Sbjct: 160 GAKQSGL 166

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	724
4dzo_A	123	Mitotic spindle assembly checkpoint protein MAD1;	100.0
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	99.25
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.67
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.56
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.2
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.08
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.64
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	96.63
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	96.47
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.31
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	95.29
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.18
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	95.09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	94.28
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	92.88
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	91.12
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	90.99
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	90.03
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	89.96
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	89.79
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	89.18
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	89.0
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	88.38
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	88.29
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	86.72
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	86.7
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	85.68
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	84.97
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	84.37
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	83.31
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	83.08
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	82.47
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	81.94
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	80.32

>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}

Probab=100.00  E-value=1.2e-39  Score=288.42  Aligned_cols=118  Identities=31%  Similarity=0.637  Sum_probs=109.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceEEeccccccCCccceeEEEeecccCCCCCeeEEeecC
Q 004893          597 SGKITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKIVMDEHQRANGIPVTHFTLQSIYAQGDDEKLEFEYES  676 (724)
Q Consensus       597 ~~~~~~l~~~~~~~~k~~~rlke~f~~k~~efr~a~~~l~Gy~i~~~~~~~~~g~~~~~~~l~s~y~~~~~~~l~f~~~~  676 (724)
                      ..++++|+.+|++++|+++||||||++||.+||+|||+||||+|+|    .+||    +|||+||||++++|||+|++.+
T Consensus         3 ~~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav~~LlGykId~----~~~~----~~rl~S~Ya~~~~d~L~F~~~~   74 (123)
T 4dzo_A            3 SKEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACYTLTGYQIDI----TTEN----QYRLTSLYAEHPGDCLIFKATS   74 (123)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEE----ETTT----EEEEEETTCSSTTCCEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEEE----ccCC----eEEEEEeecCCCCCeEEEEecC
Confidence            4689999999999999999999999999999999999999999999    6787    9999999999999999999863


Q ss_pred             --Cc-eeeccCCCCChhhhHHHHHHHhhhcCCcchhhhhhhhhhhhccCCC
Q 004893          677 --SN-TNIMVNDYTSQPEISRQVDIFVRKMNSIPAFTANLTVESFNRRTLS  724 (724)
Q Consensus       677 --~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~fla~ltl~l~~~~t~~  724 (724)
                        |+ |++++++|.  .+|+++|.+||.+++|||||||||||+||+++||.
T Consensus        75 ~~g~~~~ll~t~f~--~~~~~~i~~~l~~~~siP~FLaalTLelfe~~T~~  123 (123)
T 4dzo_A           75 PSGSKMQLLETEFS--HTVGELIEVHLRRQDSIPAFLSSLTLELFSRQTVA  123 (123)
T ss_dssp             --CCCEEEECCTTG--GGCHHHHHHHTTSSCCHHHHHHHHHHHHHHHHC--
T ss_pred             CCCceeeecCChhH--hHHHHHHHHHHHcCCCCchHhHHHHHHHHhcccCC
Confidence              54 999999886  78999999999999999999999999999999984

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=99.25  E-value=7e-12  Score=104.51  Aligned_cols=82  Identities=28%  Similarity=0.387  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCcccchhhhccccccchH--HHHHHHHHHHHHHHHHHHH
Q 004893          501 SEKLNNEERRIKSLERENDRLRSEISLLESKLGH----GDFSSENTKVLRMVNTLAVDN--EAKQTIEALQTELQKTKEK  574 (724)
Q Consensus       501 ~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~~----~~~~~~~~ril~l~~n~~~~~--~~~~~l~~l~~E~~~L~~~  574 (724)
                      ++.+..++.+|+.|+.++..|+.++..|+.+|++    |+|++++|||+||++||++.+  .++.+++.|++||++|+.+
T Consensus        11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~   90 (100)
T 1go4_E           11 REEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGL   90 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578899999999999999999999999999987    999999999999999999876  4578999999999999999


Q ss_pred             HHHHHHhh
Q 004893          575 LQAVEELK  582 (724)
Q Consensus       575 l~~l~~~~  582 (724)
                      ++.|++++
T Consensus        91 v~~lEeg~   98 (100)
T 1go4_E           91 LRAMERGG   98 (100)
T ss_dssp             HTTCC---
T ss_pred             HHHHhccC
Confidence            99887643

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=98.67  E-value=0.00045  Score=70.07  Aligned_cols=61  Identities=15%  Similarity=0.180  Sum_probs=24.9

Q ss_pred             chHHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893           56 CTYQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAA  116 (724)
Q Consensus        56 ~~~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~  116 (724)
                      |-+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..
T Consensus         6 ~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   66 (284)
T 1c1g_A            6 KKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKD   66 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444444444444444444444444443333333333333333333

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=98.56  E-value=0.00098  Score=67.49  Aligned_cols=12  Identities=17%  Similarity=0.340  Sum_probs=4.4

Q ss_pred             HHHHHHHHHHHH
Q 004893          332 QSMDQLEDELSS  343 (724)
Q Consensus       332 ~~~~~Le~el~~  343 (724)
                      ..+..+..++..
T Consensus       265 ~~~~~~~~~~~~  276 (284)
T 1c1g_A          265 LKYKAISEELDH  276 (284)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.20  E-value=3.6e-06  Score=103.71  Aligned_cols=13  Identities=54%  Similarity=0.787  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHH
Q 004893          559 QTIEALQTELQKT  571 (724)
Q Consensus       559 ~~l~~l~~E~~~L  571 (724)
                      .+++.|+..++++
T Consensus      1151 ~ele~L~~~Ieel 1163 (1184)
T 1i84_S         1151 EELEALKTELEDT 1163 (1184)
T ss_dssp             -------------
T ss_pred             HHHHHHHHHHHHH
Confidence            3444444444444

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.08  E-value=0.1  Score=52.43  Aligned_cols=67  Identities=15%  Similarity=0.117  Sum_probs=32.3

Q ss_pred             hhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHH
Q 004893           60 CRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQE  126 (724)
Q Consensus        60 ~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~e  126 (724)
                      .+...+..+...+..+..++..++..+..++..+..+...+..+...+..++..+.....++...+.
T Consensus        15 ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~   81 (256)
T 3na7_A           15 HLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQK   81 (256)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444455555555555555555555555555555555444444444444443333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.64  E-value=0.35  Score=48.44  Aligned_cols=80  Identities=14%  Similarity=0.124  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchhchHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004893          405 EAALVKEKEEVSKSEVKRIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEFIEELESNLH  484 (724)
Q Consensus       405 e~~~l~~~~~~~~~~~~rLek~~~~~~~er~~lr~~l~~~~~e~~~~~~~~~~~~~~~~~le~~l~~~~~~i~~Le~~l~  484 (724)
                      .+..+...+..+...+.+++..+..+.......+..+....            ++.....+..++..++.++..++..+.
T Consensus        47 ~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~------------~~kE~~aL~kEie~~~~~i~~lE~eil  114 (256)
T 3na7_A           47 AILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK------------SERELRSLNIEEDIAKERSNQANREIE  114 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS------------SSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC------------CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444555555555555555555555555554432            112345555666666666666666655


Q ss_pred             HHHHHhHhHHHH
Q 004893          485 AQQEINSRQRDE  496 (724)
Q Consensus       485 ~~~~~~~~l~~e  496 (724)
                      .+......+...
T Consensus       115 e~~e~ie~~~~~  126 (256)
T 3na7_A          115 NLQNEIKRKSEK  126 (256)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            444433333333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=96.63  E-value=0.21  Score=46.95  Aligned_cols=72  Identities=14%  Similarity=0.159  Sum_probs=33.1

Q ss_pred             CCCCCCCcccch-HHh----hHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHch
Q 004893           46 SSHQPSDHLLCT-YQC----RQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGR  120 (724)
Q Consensus        46 ~~~~~~~~~~~~-~~~----~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~  120 (724)
                      +|++.+..--|. |+.    ....+.++..++.+....-.+++.++   ..++..++.....++.++..+..++..++.+
T Consensus         2 ~~~f~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~EL---E~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K   78 (189)
T 2v71_A            2 AMDFSSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAEL---EAQLVQAEQRNRDLQADNQRLKYEVEALKEK   78 (189)
T ss_dssp             --CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444 333    33344455555555555444444432   2344444555555555555555555555444

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=96.47  E-value=0.41  Score=44.94  Aligned_cols=26  Identities=12%  Similarity=0.203  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893          231 SEMLKNQMKDLKEQLNECLNQKSEVE  256 (724)
Q Consensus       231 ~~~L~~el~el~~~l~e~~~~~~~Le  256 (724)
                      ++.|+.++..++.....+...+.+|+
T Consensus        90 ~~~Lq~el~~l~~~~~~l~~~ireLE  115 (189)
T 2v71_A           90 VSVLEDDLSQTRAIKEQLHKYVRELE  115 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444333333333333333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=95.31  E-value=4.7  Score=53.87  Aligned_cols=54  Identities=15%  Similarity=0.166  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHch
Q 004893           67 DFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGR  120 (724)
Q Consensus        67 ~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~  120 (724)
                      -+..-+.+...++......+..--.++.+...++..++.++...+.+++....+
T Consensus      1903 ~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~e 1956 (3245)
T 3vkg_A         1903 QVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQ 1956 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444445555555555555555566666666666666666666655544

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=95.29  E-value=0.56  Score=39.94  Aligned_cols=80  Identities=13%  Similarity=0.154  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHHHHhHHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 004893          328 REVQQSMDQLEDELSSWKFLIRDIPGVSCSEDIPVKFAALQKEVIDSMMKLGEANAQLKQMEVALDAAQLGKQSAETEAA  407 (724)
Q Consensus       328 ~~le~~~~~Le~el~~w~~~~~~~~~~~~~~~l~~~~~~Lq~e~~~l~~~~~~~~~~~~~le~~~~~~e~ek~~le~e~~  407 (724)
                      .+|...+..|..+..+|+.++...     ..+....+..|+.++..|......+...+..|+..+++++.........+.
T Consensus         6 rdL~~~~~~L~~E~e~~k~K~~~~-----~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLe   80 (111)
T 2v66_B            6 RDLQADNQRLKYEVEALKEKLEHQ-----YAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLE   80 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHH
Confidence            677888889999999999998753     223344677899999999999999999999999999988876554444455


Q ss_pred             HHHHH
Q 004893          408 LVKEK  412 (724)
Q Consensus       408 ~l~~~  412 (724)
                      ++...
T Consensus        81 D~E~k   85 (111)
T 2v66_B           81 DFEQR   85 (111)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54433

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=95.18  E-value=1.9  Score=57.37  Aligned_cols=46  Identities=20%  Similarity=0.222  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 004893          304 ELLKEKLLEEKSRRERVEQELAKLREVQQSMDQLEDELSSWKFLIR  349 (724)
Q Consensus       304 ellkee~~~lq~kl~~~E~~~~~~~~le~~~~~Le~el~~w~~~~~  349 (724)
                      .++.++..++..+..+++.-+.++.+...++..|+.++......+.
T Consensus      1906 ~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~ 1951 (3245)
T 3vkg_A         1906 LLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELD 1951 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3667778888888889999999999999999999888887766543

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=95.09  E-value=2  Score=39.35  Aligned_cols=38  Identities=18%  Similarity=0.242  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004893          148 ELEAKHRNELNLRRKAESAAASAEEKASLLEGKLTHLS  185 (724)
Q Consensus       148 ~l~~~L~~e~~~~~~~e~~~~~l~~~l~~l~~el~e~~  185 (724)
                      .+...|..+...+......+.++..++..+..++....
T Consensus        73 ~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k  110 (168)
T 3o0z_A           73 QLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLK  110 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555555555555555555555543

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=94.28  E-value=1.5  Score=52.90  Aligned_cols=25  Identities=12%  Similarity=0.412  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893          223 RAQNAEKESEMLKNQMKDLKEQLNE  247 (724)
Q Consensus       223 ~~~~~E~e~~~L~~el~el~~~l~e  247 (724)
                      .+..++++...|+.+++++...+.+
T Consensus      1024 kv~~L~~e~~~L~qq~~~l~~~~~~ 1048 (1080)
T 2dfs_A         1024 LVSELKEQNTLLKTEKEELNRRIHD 1048 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444455555555555543333

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=92.88  E-value=2.6  Score=45.39  Aligned_cols=18  Identities=11%  Similarity=0.246  Sum_probs=0.0

Q ss_pred             CCCcccCCCCCCCCCcce
Q 004893           16 GEPIIECPPTAGGSDRRL   33 (724)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~   33 (724)
                      .+|....|||-+|++-|-
T Consensus        30 ~~~~~~~~~~~~~~~~~~   47 (464)
T 1m1j_B           30 APTLRPVAPPISGTGYQP   47 (464)
T ss_dssp             ------------------
T ss_pred             CCCCCCCCCCcCCCCcCC
Confidence            344444566666756554

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=91.12  E-value=8.5  Score=34.76  Aligned_cols=38  Identities=18%  Similarity=0.160  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 004893          225 QNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSS  262 (724)
Q Consensus       225 ~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L  262 (724)
                      ..++.....|+.++.+....++.....+.+|..-+..+
T Consensus       111 ~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m  148 (154)
T 2ocy_A          111 YAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSL  148 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34445555555555555555555555555555544444

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=90.99  E-value=9.2  Score=34.95  Aligned_cols=68  Identities=15%  Similarity=0.102  Sum_probs=33.8

Q ss_pred             hHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHH
Q 004893           61 RQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQL  128 (724)
Q Consensus        61 ~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er~  128 (724)
                      ++.+..++...+..-......+.....++...+..++.....+++.+..++.....+..+...++..+
T Consensus        11 LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L   78 (168)
T 3o0z_A           11 LQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAIL   78 (168)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555554444444444444444555555555555555555555555555555554444444433

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=90.03  E-value=3  Score=37.17  Aligned_cols=68  Identities=18%  Similarity=0.282  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004893          466 ESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLG  533 (724)
Q Consensus       466 e~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~  533 (724)
                      -.++.+.+..++.|+.++..+......+..++..+..++..+..++..|..++..|..++..|+..+.
T Consensus        67 adEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~  134 (138)
T 3hnw_A           67 ADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN  134 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555556666666666665555555555566566666666666777777777777777777766654

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=89.96  E-value=11  Score=34.16  Aligned_cols=46  Identities=13%  Similarity=0.233  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q 004893          222 CRAQNAEKESEMLKNQMKDLKEQLNECLNQKSEVEKKLSSSTFQEF  267 (724)
Q Consensus       222 ~~~~~~E~e~~~L~~el~el~~~l~e~~~~~~~Le~~~~~L~~e~~  267 (724)
                      .+-..++.++..|...+.+.-...+.+.+.+..|++.+..|+..+.
T Consensus        70 qrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~  115 (155)
T 2efr_A           70 QKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELY  115 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345667777777777777777777777777777777777765553

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=89.79  E-value=8.5  Score=32.68  Aligned_cols=65  Identities=12%  Similarity=0.156  Sum_probs=35.7

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHhccCCCCCCCCcchhchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q 004893          422 RIESMLSVVTEERDKLRNVVNEFKKPKNDGGGDERANLTLTKELESSLAKKEEFIEELESNLHAQQEINSRQRDE  496 (724)
Q Consensus       422 rLek~~~~~~~er~~lr~~l~~~~~e~~~~~~~~~~~~~~~~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e  496 (724)
                      .|..+...+..+++.||..+....++.          ...+..|+.++..++..-..|...+..+...++.+...
T Consensus         7 dL~~~~~~L~~E~e~~k~K~~~~~~e~----------~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~   71 (111)
T 2v66_B            7 DLQADNQRLKYEVEALKEKLEHQYAQS----------YKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA   71 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence            344445556667777777776543221          13345566666666666666655555555555544433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=89.18  E-value=5.9  Score=44.55  Aligned_cols=70  Identities=19%  Similarity=0.211  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-------HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004893          464 ELESSLAKKEEFIEELESNLHAQQ-------EINSRQRDEIKSLSEKLNNEERRIKSLERENDRLRSEISLLESKLG  533 (724)
Q Consensus       464 ~le~~l~~~~~~i~~Le~~l~~~~-------~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~~e~~~Le~~l~  533 (724)
                      .++..+...+...+.++..+....       .....++.+...+...+...+..+.++.++...++.++..|+.++.
T Consensus       506 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~  582 (597)
T 3oja_B          506 NLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN  582 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            344444455555555544444333       3333444555566666777777888888888888888888888775

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=89.00  E-value=9.3  Score=32.01  Aligned_cols=16  Identities=44%  Similarity=0.453  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHHH
Q 004893          161 RKAESAAASAEEKASL  176 (724)
Q Consensus       161 ~~~e~~~~~l~~~l~~  176 (724)
                      ..++.....+..++.-
T Consensus        82 ~~aE~ev~~L~Rriql   97 (101)
T 3u1c_A           82 AKAESEVASLNRRIQL   97 (101)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3444444444444443

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=88.29  E-value=13  Score=32.70  Aligned_cols=47  Identities=23%  Similarity=0.350  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHch
Q 004893           74 NVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGR  120 (724)
Q Consensus        74 ~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~  120 (724)
                      .....+..+..++..++..+...+..+..+......+..+...+...
T Consensus        10 ~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~q   56 (129)
T 2fxo_A           10 EREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQ   56 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455556666666666666666666666666655555555444433

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=86.72  E-value=6.8  Score=31.79  Aligned_cols=74  Identities=12%  Similarity=0.140  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHH-------HHHhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHH
Q 004893          366 ALQKEVIDSMMKLGEANAQLKQMEVALDA-------AQLGKQSAETEAALVKEKEEVSKSEVKRIESMLSVVTEERDKLR  438 (724)
Q Consensus       366 ~Lq~e~~~l~~~~~~~~~~~~~le~~~~~-------~e~ek~~le~e~~~l~~~~~~~~~~~~rLek~~~~~~~er~~lr  438 (724)
                      .|+..+..+..+.+.+..++.+++..++.       --..++.++.++..++..++.+.-....|+.++..+..++..+|
T Consensus         4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk   83 (86)
T 3swk_A            4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK   83 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34445555555555555555555444433       11224667777888888888887777888888888888887776


Q ss_pred             H
Q 004893          439 N  439 (724)
Q Consensus       439 ~  439 (724)
                      +
T Consensus        84 k   84 (86)
T 3swk_A           84 K   84 (86)
T ss_dssp             T
T ss_pred             h
Confidence            4

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=85.68  E-value=15  Score=30.75  Aligned_cols=15  Identities=27%  Similarity=0.319  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHHHHH
Q 004893          161 RKAESAAASAEEKAS  175 (724)
Q Consensus       161 ~~~e~~~~~l~~~l~  175 (724)
                      ..++.....+..++.
T Consensus        82 ~~AE~evasLnRriq   96 (101)
T 3u59_A           82 TDAEAEVASLNRRIQ   96 (101)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            344444444444443

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=84.97  E-value=16  Score=30.64  Aligned_cols=38  Identities=18%  Similarity=0.239  Sum_probs=23.0

Q ss_pred             HHhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893           58 YQCRQMVKSDFLDALTNVEKQVRDYQSKLEELNENFSK   95 (724)
Q Consensus        58 ~~~~~~~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~   95 (724)
                      -+...+++.+|...+..++..+......+..++..+..
T Consensus        19 ~~~~~~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q   56 (110)
T 2v4h_A           19 SHMASMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQ   56 (110)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444566667666666666666666666666655543

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=84.37  E-value=17  Score=32.54  Aligned_cols=65  Identities=15%  Similarity=0.092  Sum_probs=34.2

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHH
Q 004893           64 VKSDFLDALTNVEKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAKGREGVLQEQL  128 (724)
Q Consensus        64 ~~~~~~~~l~~~e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~~~~~~l~er~  128 (724)
                      .+..+..++..++..|..++..+......+..+..++..++-++..++.++..++.+-..+.+|+
T Consensus        69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW  133 (152)
T 3a7p_A           69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW  133 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555555555555555555555555555555555555555555444444444

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=83.31  E-value=13  Score=40.01  Aligned_cols=52  Identities=10%  Similarity=0.013  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-------------HHHHHHHHHHHHHhh
Q 004893          152 KHRNELNLRRKAESAAASAEEKASLLEGKLTHLSDSI-------------EREKKRLNNEVTQLK  203 (724)
Q Consensus       152 ~L~~e~~~~~~~e~~~~~l~~~l~~l~~el~e~~~~~-------------e~e~~~L~~~l~~L~  203 (724)
                      .+...+..+..|+..+..+..++..|+.++.-.....             -..+..+++++.++.
T Consensus       125 kVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~  189 (562)
T 3ghg_A          125 KVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVI  189 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHh
Confidence            3444444456666677777777777777776553211             245667777777754

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=83.08  E-value=9.1  Score=34.07  Aligned_cols=6  Identities=0%  Similarity=0.191  Sum_probs=2.4

Q ss_pred             eeeccC
Q 004893           33 LVIYED   38 (724)
Q Consensus        33 ~~~~~~   38 (724)
                      +.||..
T Consensus        12 V~I~Gk   17 (138)
T 3hnw_A           12 VILGGK   17 (138)
T ss_dssp             EEETTE
T ss_pred             EEECCE
Confidence            334443

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=82.47  E-value=12  Score=33.53  Aligned_cols=63  Identities=19%  Similarity=0.227  Sum_probs=44.8

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893          460 TLTKELESSLAKKEEFIEELESNLHAQQEINSRQRDEIKSLSEKLNNEERRIKSLERENDRLR  522 (724)
Q Consensus       460 ~~~~~le~~l~~~~~~i~~Le~~l~~~~~~~~~l~~e~~~l~~~l~~l~~~i~~Le~e~~~l~  522 (724)
                      ..+..|..++..++..|..|+..+..-...+..++.++..++-+++.+..++..|+.++..|-
T Consensus        68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV  130 (152)
T 3a7p_A           68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLV  130 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667777777777888887777776666777777777777777777777777766665553

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=81.94  E-value=14  Score=30.62  Aligned_cols=42  Identities=14%  Similarity=0.260  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893           76 EKQVRDYQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAA  117 (724)
Q Consensus        76 e~qi~~le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~  117 (724)
                      +..+..++.+-..+-.++..++.+...+...|..++.+...+
T Consensus        10 ~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L   51 (96)
T 3q8t_A           10 QRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERL   51 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444444444444444433

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=80.32  E-value=24  Score=29.37  Aligned_cols=37  Identities=11%  Similarity=0.206  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004893           82 YQSKLEELNENFSKAEAERKKFRDQFLYAEQELAAAK  118 (724)
Q Consensus        82 le~~l~~l~~~l~~~e~~~~~lq~~l~~le~el~~~~  118 (724)
                      ++.++........+++.++..++.++..++.++..+.
T Consensus        28 ~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~   64 (101)
T 3u59_A           28 AEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYS   64 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333344444444444444444444333

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00