Citrus Sinensis ID: 004913

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720----
Protein Sequence
MNQRRSPPKHRHDGTSPLPLGMDWSPAPRKWNGRDTVWPHDPRTGWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAARSSFQDVNQNASEANPSSNSTISSLQMPSDSGFTLIGSSSVTSDYGSDTAYETSELGTPKLGRDNGSEIGVEDLTLDEDLTSPIENLVKYGMSNIDEGLFMGQTILEQLEGFPRHKAHAQQHPNNATGKNVNNGNVSKALFLSGNGMDLFSEPEPGKVIGHARKLSADSVRSDASSIRGSEISNFGIPNSSADGSPGLHRCAEVSSSREILGNSDLQFSGDAELVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANLYAEEEDNVILESSSAADALALLTSSDDQISLLITEAQLLAEDSKAAASADVEKAHDNDVCTRTDNELREVIADILVDNAKLRKQVNSVLRRALLFRNNESPPPSSDNLLDDSSER
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccEEcccccccccEEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHccHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccHHcHHHHHccccccHHHHHccccccccccccccccHHHHHcccccccccccccccccHHHHHHHHHHccccccHHHccccccccccccccccccccccccccccHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccEEEEccccccccEEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHccccHHHHHHHHHHHHHHHHHHHccHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccHHEEEEccccccccccccHHHHHHHccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccccEEEcccccHHHHHHHHccHHHHHHHHHHHHHHHHHcHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccc
Coil and Loop (DISEMBL)
mnqrrsppkhrhdgtsplplgmdwspaprkwngrdtvwphdprtgwsycvtipswvvlpksrdsdpvVFYRVQVglqspegitttRGVLRRFNNFLKLFTDLKkafpkknippappkgllRMKSRALLEERRCSLEEWMTKLLSdidlsrsvsVASFLELEAAARSSFQdvnqnaseanpssnstisslqmpsdsgftligsssvtsdygsdtayetselgtpklgrdngseigvedltldedltspIENLVKYGMSNIDEGLFMGQTILEQlegfprhkahaqqhpnnatgknvnngnvsKALFlsgngmdlfsepepgkvigharklsadsvrsdassirgseisnfgipnssadgspglhrcaevsssreilgnsdlqfsgdaelvipldqrHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKskqdgnphaesmeestvkDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNanlyaeeednvilesSSAADALALLTSSDDQISLLITEAQLLAEDSKAAASADvekahdndvctrTDNELREVIADILVDNAKLRKQVNSVLRRALLfrnnespppssdnllddsser
Flexible Loop (DISEMBL)
mnqrrsppkhrhdgtsplplgmdWSPAPRKWNGRDTVWPHDPRTGWSYCVTIPSWVVLPKSRDSDPVVFYRVQvglqspegitttrgvLRRFNNFLKLFTdlkkafpkknippappkgllrmKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAARSSFQDVNQNASEANPSSNSTISSLQMPSDSGFTLIGSSSVTSDYGSDTayetselgtpklgrdnGSEIGvedltldedlTSPIENLVKYGMSNIDEGLFMGQTILEQLEGFPRHKAHAQQHpnnatgknvnngNVSKALFLSGNGMDLFSEPEPGKVIGHARKLSADSVRSDASSirgseisnfgipnssadgsPGLHRCAEVSSSREILGNSDLQFSGDAELVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRlnqemtvkdYLMTKVKDLEVelettkqksketLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQdgnphaesmeestvkdknVLQELDATKEQLENLSKRYEeleakskadiKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANLYAEEEDNVILESSSAADALALLTSSDDQISLLITEAQLLAEDSKAAAsadvekahdndvctrtdNELREVIADilvdnaklrkQVNSVLRRAllfrnnespppssdnllddsser
Low Complexity Region (SEG)
MNQRRSPPKHRHDGTSPLPLGMDWSPAPRKWNGRDTVWPHDPRTGWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAARSSFQDVNQNASEANPSSNSTISSLQMPSDSGFTLIGSSSVTSDYGSDTAYETSELGTPKLGRDNGSEIGVEDLTLDEDLTSPIENLVKYGMSNIDEGLFMGQTILEQLEGFPRHKAHAQQHPnnatgknvnngnvSKALFLSGNGMDLFSEPEPGKVIGHARKLSADSVRSDASSIRGSEISNFGIPNSSADGSPGLHRCAEVSSSREILGNSDLQFSGDAELVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANLYAEEEDNVILEsssaadalalltssddQISLLITEAQLLAEDSKAAASADVEKAHDNDVCTRTDNELREVIADILVDNAKLRKQVNSVLRRALLFRnnespppssdnllddsseR
Disordered region (IsUnstruct)
*****************************KWNGRDTVWPHDPRTGWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKK**************************RRCSLEEWMTKLLSDIDLSRSVSVASFLEL*****************************************************************************LTLDEDLTSPIENLVKYGMSNIDEGLFMGQTILEQLEG********************************************************************************************************LQFSGDAELVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEV************************************************************************************************IKVLVKEVKFLR************************************VREKLLHECRILLNRFQACNANLYAEEEDNVILESSSAADALALLTSSDDQISLLITEAQLL******************DVCTRTDNELREVIADILVDNAKLRKQVNSVLRRALLF********************
Disordered Region (DISOPRED)
******************PLGMDWSPAPRKWNGRDTVWPHDPRTGWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAA********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
*************GTSPLPLGMDWSPAPRKWNGRDTVWPHDPRTGWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAARSSFQDV*****************LQMPSDSGFTLIGSSSVTSDYGSDTAYETSELGTPKLGRDNGSEIGVEDLTLDEDLTSPIENLVKYGMSNIDEGLFMGQTILEQLEGFPRHKAHAQQHPNNATGKNVNNGNVSKALFLSGNGMDLFSEPEPGKVIGHARK************IRGSEISNFGIPNSSADGSPGLHRCAEVSSSREILGNSDLQFSGDAELVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWK*******************KDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANLYAEEEDNVILESSSAADALALLTSSDDQISLLITEAQLLAE****************DVCTRTDNELREVIADILVDNAKLRKQVNSVLRRALLFRNNE****************
Disordered Region (DISPRO)
******************PLGMDWSPAPRKWNGRDTVWPHDPRTGWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAARSSFQD*N*******************************S***DYGSDTAYETSELGTPKL*RDNGSEIGVEDLTLDEDLTSPIENLVKYGMSNIDEGLFMGQTILEQLEGFPRHKAHAQQHPNNATGKNVNNGNVSKALFLSGNGMDLFS********************************************************REILGNSDLQFSGDAELVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQD**********STVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANLYAEEEDNVILESSSAADALALLTSSDDQISLLITEAQLLAEDSKAA**************TRTDNELREVIADILVDNAKLRKQVNSVLRRALLF********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNQRRSPPKHRHDGTSPLPLGMDWSPAPRKWNGRDTVWPHDPRTGWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAARSSFQDVNQNASEANPSSNSTISSLQMPSDSGFTLIGSSSVTSDYGSDTAYETSELGTPKLGRDNGSEIGVEDLTLDEDLTSPIENLVKYGMSNIDEGLFMGQTILEQLEGFPRHKAHAQQHPNNATGKNVNNGNVSKALFLSGNGMDLFSEPEPGKVIGHARKLSADSVRSDASSIRGSEISNFGIPNSSADGSPGLHRCAEVSSSREILGNSDLQFSGDAELVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVxxxxxxxxxxxxxxxxxxxxxxxxxxxxAxxxxxxxxxxxxxxxxxxxxxSLEMEWKLKSKQDGNPHAESMEESTVKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLVKEVKFLRSSQIGLxxxxxxxxxxxxxxxxxxxxxxxxHNHMKTVREKLLHECRILLNRFQACNANLYAEEEDNVILESSSAADALALLTSSDDQISLLITEAQLLAEDSKAAASADVEKAHDNDVCTRTDNELREVIADILVDNAKLRKQVNSVLRRALLFRNNESPPPSSDNLLDDSSER
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	724
255548876	710	conserved hypothetical protein [Ricinus	0.959	0.978	0.710	0.0
224143168	713	predicted protein [Populus trichocarpa]	0.972	0.987	0.693	0.0
224092502	669	predicted protein [Populus trichocarpa]	0.921	0.997	0.698	0.0
359475826	717	PREDICTED: uncharacterized protein LOC10	0.965	0.974	0.697	0.0
356507680	724	PREDICTED: uncharacterized protein LOC10	0.964	0.964	0.662	0.0
356518242	721	PREDICTED: uncharacterized protein LOC10	0.959	0.963	0.657	0.0
357466161	705	hypothetical protein MTR_3g106770 [Medic	0.964	0.990	0.643	0.0
449524486	727	PREDICTED: uncharacterized protein LOC10	0.955	0.951	0.651	0.0
449437156	728	PREDICTED: uncharacterized protein LOC10	0.955	0.950	0.651	0.0
42567325	723	Phox (PX) domain-containing protein [Ara	0.951	0.952	0.621	0.0

>gi|255548876|ref|XP_002515494.1| conserved hypothetical protein [Ricinus communis] gi|223545438|gb|EEF46943.1| conserved hypothetical protein [Ricinus communis]

 Score = 1007 bits (2604), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/715 (71%), Positives = 592/715 (82%), Gaps = 20/715 (2%)

Query: 3   QRRSPPKHRHDGTSPLPLGMDWSPAPRKWNGRDTVWPHDPRTGWSYCVTIPSWVVLPKSR 62
           QRRSPPKHRHDGTSPLPLGMDWSP PRKWNGR+T+WPHDPR+GWSYCV IPSWVVLPKSR
Sbjct: 2   QRRSPPKHRHDGTSPLPLGMDWSPPPRKWNGRNTIWPHDPRSGWSYCVIIPSWVVLPKSR 61

Query: 63  DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRM 122
           DSDPVVFYRVQ+GLQSPEG+TTTRGVLRRFN+FLKL+TDLK++FPKKN+PPAPPKGLLR+
Sbjct: 62  DSDPVVFYRVQIGLQSPEGVTTTRGVLRRFNDFLKLYTDLKRSFPKKNLPPAPPKGLLRL 121

Query: 123 KSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAARSSFQDVNQNASEANPSS 182
           KSRALLEERRCSLEEWMTKLLSDIDLSRS++VASFLELEAAARSSFQDVNQ  SEA+P++
Sbjct: 122 KSRALLEERRCSLEEWMTKLLSDIDLSRSMAVASFLELEAAARSSFQDVNQQLSEASPAA 181

Query: 183 NSTISSLQMPSDSGFTL-IGSSSVTSDYGSDTAYETSELGTPKLGRDNGSEIGVEDLTLD 241
           +   SSLQ+P +S  +L +GSSSVTSDYGSDTAYETSELGTP+LGRD   ++G+EDLTLD
Sbjct: 182 DRATSSLQIPLNSTSSLNVGSSSVTSDYGSDTAYETSELGTPRLGRDEQCDVGIEDLTLD 241

Query: 242 EDLTSPIENLVKYGMSNIDEGLFMGQTILEQLEGFPRHKAHAQQHPNNATGKNVNNGNVS 301
           EDLT+PIE LVKYGMSNIDEGLFMGQTILEQLEG PRHK HA  H NN TGK+  NGN S
Sbjct: 242 EDLTNPIEKLVKYGMSNIDEGLFMGQTILEQLEGLPRHKPHA-THMNNVTGKDTYNGNAS 300

Query: 302 KALFLSGNGMDLFSEPEPGKVIGHARKLSADSVRSDASSIRGSEISNFGIPNSSADGSPG 361
           +  F + NGM+LFSE EPGKV GH RKLS++SV SD SS+RGSEISN G PN S DGS  
Sbjct: 301 RISFPASNGMELFSETEPGKVFGHGRKLSSESVGSDGSSLRGSEISNSGTPNLSGDGSLD 360

Query: 362 LHRCAEVSSSREILGNSDLQFSGDAELVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLIT 421
           L    +VSS   ILG+++LQFSGDA++++P DQR K++R LLTM+RRLVTAKTDMEDLI 
Sbjct: 361 LPGGVDVSSVAGILGSAELQFSGDAQIILPSDQRQKMNRALLTMQRRLVTAKTDMEDLIA 420

Query: 422 RLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSL 481
           RL+QE+ VKDYL TKVKDLE ELETTKQK+KE LQQAIL ERERLTQMQWDMEELR+KS 
Sbjct: 421 RLHQEIAVKDYLTTKVKDLEAELETTKQKNKENLQQAILIERERLTQMQWDMEELRRKSF 480

Query: 482 EMEWKLKSKQDGNPHAESMEESTVKDKNV-LQELDATKEQLENLSKRYEELEAKSKADIK 540
           EME KLKSK+D N   E    ST  +K++ LQELDATK+QL+NLSK+YEELEAKSKADIK
Sbjct: 481 EMELKLKSKEDDNSSRELKMGSTDLEKDMALQELDATKKQLQNLSKQYEELEAKSKADIK 540

Query: 541 VLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLN 600
            L KE K L+SSQ  LK+ELSQ + EK + E+LLQ+ER+   H K  R+KLL++CR L N
Sbjct: 541 FLAKEFKTLKSSQAVLKEELSQSVREKYEVEKLLQEEREMRMHEKNARKKLLYDCRTLCN 600

Query: 601 RFQACNANLYAEEEDNVILESSSAADALALLTSSDDQISLLITEAQLLAEDSKAAASADV 660
           R + CN NL +EEED  I+E SS ADAL LL++SDDQI+LL+ EAQ L ED K AAS   
Sbjct: 601 RLKECNLNLSSEEEDEFIVE-SSLADALDLLSTSDDQIALLLAEAQGLFEDDKIAAS--- 656

Query: 661 EKAHDNDVCTRTDNELREVIADILVDNAKLRKQVNSVLRRAL----LFRNNESPP 711
               D+D+      EL++++A+I+ DN KLRK+VNSV+R AL    L RN++  P
Sbjct: 657 ----DDDM-----QELQKMLANIITDNVKLRKRVNSVMRCALHTGNLSRNSDEAP 702

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143168|ref|XP_002324868.1| predicted protein [Populus trichocarpa] gi|222866302|gb|EEF03433.1| predicted protein [Populus trichocarpa]

 Score =  990 bits (2560), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/721 (69%), Positives = 582/721 (80%), Gaps = 17/721 (2%)

Query: 1   MNQRRSPPKHRHDGTSPLPLGMDWSPAPRKWNGRDTVWPHDPRTGWSYCVTIPSWVVLPK 60
           M + RSPPKHRHDGTSPLPLGMDWSP PRKW+ R+T+WPHDPRTGWSYCV IPSWVV+PK
Sbjct: 1   MQRLRSPPKHRHDGTSPLPLGMDWSPPPRKWSARETIWPHDPRTGWSYCVAIPSWVVVPK 60

Query: 61  SRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL 120
           SRDSDPVVFYRVQVGLQSPEG+TTTRGVLRRFN+F+KLFTDLKKAFP+K +PPAPPKGLL
Sbjct: 61  SRDSDPVVFYRVQVGLQSPEGVTTTRGVLRRFNDFMKLFTDLKKAFPRKTLPPAPPKGLL 120

Query: 121 RMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAARSSFQDVNQNASEANP 180
           R+KSRALLEERR SLE+WMTKLLSDIDLSRSVSVASFLELEAAARSSFQDVNQ +SEA+P
Sbjct: 121 RLKSRALLEERRYSLEQWMTKLLSDIDLSRSVSVASFLELEAAARSSFQDVNQQSSEASP 180

Query: 181 SSNSTISSLQMPSDSGFTLIGSSSVTSDYGSDTAYETSELGTPKLGRDNGSEIGVEDLTL 240
           + +S+ SSLQ+P +   +L   SS+ SDYGSDTAYETS+LGTP+L RD    IG+ DL L
Sbjct: 181 TGDSSTSSLQIPPNLS-SLATGSSIASDYGSDTAYETSDLGTPRLERDENFGIGLGDLAL 239

Query: 241 DEDLTSPIENLVKYGMSNIDEGLFMGQTILEQLEGFPRHKAHAQQHPNNATGKNVNNGNV 300
           DEDLTSP+E LVKYGMSNIDEGLFMGQTILEQLEG PRH+ H   H  N T K+V NGN 
Sbjct: 240 DEDLTSPMEKLVKYGMSNIDEGLFMGQTILEQLEGLPRHRPHG-VHIKNVTAKDVYNGNA 298

Query: 301 SKALFLSGNGMDLFSEPEPGKVIGHARKLSADSVRSDASSIRGSEISNFGIPNSSADGSP 360
           SKA F  GNGM+LFSEP P K  GH RKLS++SV SD SS+RGSE+SN GIPNSS DGS 
Sbjct: 299 SKASFFPGNGMELFSEPGPAKAYGHVRKLSSESVGSDGSSLRGSELSNAGIPNSSGDGSL 358

Query: 361 GLHRCAEVSSSREILGNSDLQFSGDAELVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLI 420
            L   AEV SS E++GN++LQFSGDA +V+P+DQRHK++RVLLTM+RRLVTAKTDMEDLI
Sbjct: 359 DLPGIAEVLSSAEVVGNAELQFSGDAHIVLPMDQRHKMNRVLLTMQRRLVTAKTDMEDLI 418

Query: 421 TRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKS 480
           +RLNQE+ VKDYL TKVKDLEVELET KQK+KE +QQAIL ERERLTQMQWDMEELR+KS
Sbjct: 419 SRLNQEIAVKDYLTTKVKDLEVELETNKQKNKENMQQAILIERERLTQMQWDMEELRRKS 478

Query: 481 LEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADI 539
           LEME KLKSK+      E    ST  +K+ VL+ELDAT++ LE+LSKRYEELEAKSKADI
Sbjct: 479 LEMELKLKSKEGEQSSTEFQMASTDHEKDMVLEELDATRKLLEDLSKRYEELEAKSKADI 538

Query: 540 KVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILL 599
           K L KE K L++SQ  LKQELSQ L EKS+ E+LL +ER+   H K  R+KLLH+CRIL 
Sbjct: 539 KFLAKEFKSLKNSQTTLKQELSQSLKEKSEVEKLLHEEREMKEHGKIARKKLLHDCRILC 598

Query: 600 NRFQACNANLYAEEEDNVILESSSAADALALLTSSDDQISLLITEAQLLAEDSKAAASAD 659
           ++ Q CN NL +E+++ V+    S ADAL LLT+SDDQI  L+TEAQ L ED K  A   
Sbjct: 599 DQLQECNVNLLSEDDNFVV--DFSLADALDLLTTSDDQIGHLLTEAQQLFEDDKITAP-- 654

Query: 660 VEKAHDNDVCTRTDNELREVIADILVDNAKLRKQVNSVLRRAL----LFRNNESPPPSSD 715
                 +D    TD+ELR ++A++  DNA LRKQVNS +RRAL    + R++    PSS+
Sbjct: 655 ------DDNLRSTDDELRNMLANLFTDNAMLRKQVNSTMRRALKMGSISRSSNDGAPSSN 708

Query: 716 N 716
           N
Sbjct: 709 N 709

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092502|ref|XP_002309637.1| predicted protein [Populus trichocarpa] gi|222855613|gb|EEE93160.1| predicted protein [Populus trichocarpa]

 Score =  955 bits (2469), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/700 (69%), Positives = 561/700 (80%), Gaps = 33/700 (4%)

Query: 5   RSPPKHRHDGTSPLPLGMDWSPAPRKWNGRDTVWPHDPRTGWSYCVTIPSWVVLPKSRDS 64
           RSPPKHRHDGTSPLPLGMDWSP PRKW+GR+TVWPHDPRTGWSYCVTIPSW VLPKSRDS
Sbjct: 1   RSPPKHRHDGTSPLPLGMDWSPPPRKWSGRETVWPHDPRTGWSYCVTIPSWAVLPKSRDS 60

Query: 65  DPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKS 124
           DPVVFYRVQVG+QSPEG TT RGVL+RFN+F+KLFTDLKKAFP+KNIPPAPPKGLLR+KS
Sbjct: 61  DPVVFYRVQVGVQSPEGATTIRGVLKRFNDFMKLFTDLKKAFPRKNIPPAPPKGLLRLKS 120

Query: 125 RALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAARSSFQDVNQNASEANPSSNS 184
           RALLEERR SLE+WMTKLLSDIDLSRSV+VAS+ ELEAAARSSFQD NQ +SEA+P+ + 
Sbjct: 121 RALLEERRYSLEQWMTKLLSDIDLSRSVAVASYFELEAAARSSFQDGNQQSSEASPTGDG 180

Query: 185 TISSLQMPSDSGFTLIGSSSVTSDYGSDTAYETSELGTPKLGRDNGSEIGVEDLTLDEDL 244
           + SSLQ+P +   +L  SSS+ SDYGSDTAYETS+LGTPKL RD    IG+ DL LDEDL
Sbjct: 181 STSSLQIPPNLSSSLATSSSIASDYGSDTAYETSDLGTPKLARDGNFGIGLGDLALDEDL 240

Query: 245 TSPIENLVKYGMSNIDEGLFMGQTILEQLE-GFPRHKAHAQQHPNNATGKNVNNGNVSKA 303
           T PIE LVKYGM+NIDEGLFMGQTILEQLE G+                    NGN SK 
Sbjct: 241 TGPIEKLVKYGMTNIDEGLFMGQTILEQLEDGY--------------------NGNASKD 280

Query: 304 LFLSGNGMDLFSEPEPGKVIGHARKLSADSVRSDASSIRGSEISNFGIPNSSADGSPGLH 363
            FL+GNGM+L+SEPEPGKV GH RKLS DSV SD SS+RGSEISN GIPNSS DG   L 
Sbjct: 281 SFLTGNGMELYSEPEPGKVFGHVRKLSCDSVESDGSSLRGSEISNSGIPNSSGDGYLDLP 340

Query: 364 RCAEVSSSREILGNSDLQFSGDAELVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRL 423
             AE+SSS EILGN+++QFSGDA +V+PLDQRHK++RVLLTM+RRLVT KTDMEDL++RL
Sbjct: 341 GVAEISSSTEILGNTEMQFSGDAHIVLPLDQRHKMNRVLLTMQRRLVTVKTDMEDLVSRL 400

Query: 424 NQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEM 483
           NQE+ VKDYL TKVKDLEVE ETTKQK+KET+QQAIL ERERLTQMQWDMEELR+KSLEM
Sbjct: 401 NQEIAVKDYLTTKVKDLEVEFETTKQKNKETMQQAILIERERLTQMQWDMEELRRKSLEM 460

Query: 484 EWKLKSKQDGNPHAESMEESTVKDKNV-LQELDATKEQLENLSKRYEELEAKSKADIKVL 542
           E KLKSK+      E     T  +K++ L+ELDAT++QLE LSKRYEELEAKSKAD K L
Sbjct: 461 ELKLKSKEGEQRSTEFQMAPTDHEKDIALEELDATRKQLEELSKRYEELEAKSKADFKFL 520

Query: 543 VKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRF 602
            KE K L+SSQ  LKQELSQ L EKS+ E+LL +ER+   H K  R+KLL++C IL ++ 
Sbjct: 521 AKEFKSLKSSQTTLKQELSQSLKEKSEVEKLLYEEREMKEHEKITRKKLLNDCSILYDQL 580

Query: 603 QACNANLYAEEEDNVILESSSAADALALLTSSDDQISLLITEAQLLAEDSKAAASADVEK 662
           Q CN NL +  EDN I+ +SS  DAL LLT+SDDQIS L+ EAQLL ED K  A     +
Sbjct: 581 QECNGNLSS--EDNFIV-NSSLGDALDLLTTSDDQISHLLAEAQLLFEDDKTTAPNKDTR 637

Query: 663 AHDNDVCTRTDNELREVIADILVDNAKLRKQVNSVLRRAL 702
           A        TD+ELRE++A+I  DNAKLRKQVNS++R AL
Sbjct: 638 A--------TDDELREMLANIFTDNAKLRKQVNSIMRHAL 669

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475826|ref|XP_002285195.2| PREDICTED: uncharacterized protein LOC100267879 [Vitis vinifera]

 Score =  953 bits (2463), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/704 (69%), Positives = 580/704 (82%), Gaps = 5/704 (0%)

Query: 3   QRRSPPKHRHDGTSPLPLGMDWSPAPRKWNGRDTVWPHDPRTGWSYCVTIPSWVVLPKSR 62
           +R SPPKHRHDGTSPLPLGMDWSP PRKW+GRDTVWPHD  TGWSYCV IPSWVVLPKSR
Sbjct: 2   RRSSPPKHRHDGTSPLPLGMDWSPPPRKWSGRDTVWPHDYHTGWSYCVIIPSWVVLPKSR 61

Query: 63  DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRM 122
           DSDPVVFYRVQVG+QSPEGITT RGVLRRFN+FLKLFTDLKKAFPKKNIPPAPPKGLLRM
Sbjct: 62  DSDPVVFYRVQVGVQSPEGITTMRGVLRRFNDFLKLFTDLKKAFPKKNIPPAPPKGLLRM 121

Query: 123 KSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAARSSFQDVNQNASEANPSS 182
           K+R LLE+RR SLEEWM KLLSDIDLSRS+SVASFLELEAAAR+SFQDVNQ  SEANPS 
Sbjct: 122 KNRVLLEQRRRSLEEWMAKLLSDIDLSRSISVASFLELEAAARASFQDVNQQISEANPSG 181

Query: 183 NSTISSLQMPSDSGFTLI-GSSSVTSDYGSDTAYETSELGTPKLGRDNGSEIGVEDLTLD 241
           N TISSLQ   +S  +++ GSSS+TSDYGSDTAYETSELGTP+LG+DN SE+ ++DL LD
Sbjct: 182 NGTISSLQHHPNSSLSVVAGSSSITSDYGSDTAYETSELGTPRLGKDNSSELDLDDLILD 241

Query: 242 EDLTSPIENLVKYGMSNIDEGLFMGQTILEQLEGFPRHKAHAQQHPNNATGKNVNNGNVS 301
           EDLTSPIE LVKYGMSNIDEGLF+GQTILEQLEGFPRHK H +Q  N+  GK+  NGN S
Sbjct: 242 EDLTSPIEKLVKYGMSNIDEGLFVGQTILEQLEGFPRHKTHGRQ-VNSLIGKDTENGNAS 300

Query: 302 KALFLSGNGMDLFSEPEPGKVIGHARKLSADSVRSDASSIRGSEISNFGIPNSSADGSPG 361
           KA FL+G+ MD   E + GKVI H RKLSA SV SD SS+RGSE+SN GI NS  DGS  
Sbjct: 301 KAEFLAGDRMDFLPEADDGKVISHGRKLSAGSVGSDTSSLRGSEMSNSGIINSIGDGSLD 360

Query: 362 LHRCAEVSSSREILGNSDLQFSGDAELVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLIT 421
           L    EVS + EIL N +L FSGD ++V+PLDQRHK++R+L+TM++RLVTAKTDMEDLI 
Sbjct: 361 LPGGVEVSRTTEILNNIELHFSGDTQIVLPLDQRHKMNRILMTMQQRLVTAKTDMEDLIA 420

Query: 422 RLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSL 481
           RL+QE+ VK YL TKVKDLEVELETTKQKSKE LQQ+IL ERER+TQMQWDMEELR+K+ 
Sbjct: 421 RLHQEVAVKGYLTTKVKDLEVELETTKQKSKENLQQSILIERERVTQMQWDMEELRRKTF 480

Query: 482 EMEWKLKSK--QDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKAD 538
           EME KLKSK  QD   + ES + S+ ++K+ +L+ELDATK+QLENL K++E+LE KSK+D
Sbjct: 481 EMELKLKSKPFQDDKLYPESTKVSSDQEKDMLLEELDATKKQLENLLKQHEKLEMKSKSD 540

Query: 539 IKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRIL 598
           IKVLVKEVK LRSSQ  +KQELS+ L EKS+TE+LLQQER+      T R KLL+EC IL
Sbjct: 541 IKVLVKEVKSLRSSQTQMKQELSRSLKEKSETEKLLQQERERSELENTARRKLLYECEIL 600

Query: 599 LNRFQACNANLYAEEEDNVILESSSAADALALLTSSDDQISLLITEAQLLAEDSKAAASA 658
            N+ + C+ N  +E+ DNV + SS  +DAL LLT+SD++I  L+ EA LLA+D++   S 
Sbjct: 601 HNQLRECSLNFPSEDGDNVAMNSSPLSDALDLLTTSDNRIGRLLAEAPLLAQDNEYVVSG 660

Query: 659 DVEKAHDNDVCTRTDNELREVIADILVDNAKLRKQVNSVLRRAL 702
             +  + N+  +R D+ELR+V+ DI ++NA+LRKQVNSV+RR+L
Sbjct: 661 INKNDNSNNDVSRIDDELRKVLKDIFLENARLRKQVNSVIRRSL 704

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507680|ref|XP_003522592.1| PREDICTED: uncharacterized protein LOC100792151 [Glycine max]

 Score =  932 bits (2408), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/702 (66%), Positives = 559/702 (79%), Gaps = 4/702 (0%)

Query: 3   QRRSPPKHRHDGTSPLPLGMDWSPAPRKWNGRDTVWPHDPRTGWSYCVTIPSWVVLPKSR 62
           QRRSPPKHRHDGTSPLPLGMDWSPAPRKWNGRDTVWPH+  TGWSYCVTIPSW  +PKSR
Sbjct: 2   QRRSPPKHRHDGTSPLPLGMDWSPAPRKWNGRDTVWPHNHLTGWSYCVTIPSWAFVPKSR 61

Query: 63  DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRM 122
           +SDP+VFYRVQVG+QSPEGIT   GVLRRFN+FLKLF D+KK FP+KNIPPAPPKGLLR+
Sbjct: 62  NSDPIVFYRVQVGVQSPEGITKVHGVLRRFNDFLKLFADIKKEFPRKNIPPAPPKGLLRL 121

Query: 123 KSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAARSSFQDVNQNASEANPSS 182
           KSRALLEERRCSLEEW+TKLLSDID+SR  +VASFLELEAAARSSFQD +Q  SE +P S
Sbjct: 122 KSRALLEERRCSLEEWITKLLSDIDISRCAAVASFLELEAAARSSFQDASQQNSETDPDS 181

Query: 183 NSTISSLQMPSDSGFTLI-GSSSVTSDYGSDTAYETSELGTPKLGRDNGSEIGVEDLTLD 241
           N+T+ S+Q P  S  +L  GSSSV SDYGSDTAYE S+LGTP++GRD+ SE+G +DLTLD
Sbjct: 182 NNTVYSVQSPLQSSLSLFAGSSSVASDYGSDTAYEPSDLGTPRIGRDDNSEVGTDDLTLD 241

Query: 242 EDLTSPIENLVKYGMSNIDEGLFMGQTILEQLEGFPRHKAHAQQHPNNATGKNVNNGNVS 301
           ED+T+PIE LVKYG+SNIDEGLFMGQTILEQLEG PRHKA+A +H N A  K  NNGNV 
Sbjct: 242 EDMTNPIEKLVKYGISNIDEGLFMGQTILEQLEGLPRHKANA-RHVNYAAEKVKNNGNVY 300

Query: 302 KALFLSGNGMDLFSEPEPGKVIGHARKLSADSVRSDASSIRGSEISNFGIPNSSADGSPG 361
            +  L+ N M+LFSEP   KV+ H RKLS++SV SD SSIRGS++SNFGIPNSS DGS  
Sbjct: 301 DSSLLANNTMELFSEPGHAKVVAHVRKLSSESVGSDGSSIRGSDMSNFGIPNSSGDGSHD 360

Query: 362 LHRCAEVSSSREILGNSDLQFSGDAELVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLIT 421
           L   A VS   +I+G++ L+ +GD +LV+PLDQR+KL+R+L TM+RRL TAKTDMEDLI 
Sbjct: 361 LPGSALVSRETDIMGHTKLKSTGDTQLVLPLDQRNKLNRILSTMQRRLGTAKTDMEDLIV 420

Query: 422 RLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSL 481
           RLNQE+  KD+L TKVKDLEVELETTKQK+KE LQQAIL ERER TQMQW+MEELR++SL
Sbjct: 421 RLNQEIAAKDFLATKVKDLEVELETTKQKNKENLQQAILIERERFTQMQWNMEELRRQSL 480

Query: 482 EMEWKLKSKQDGNPHAESMEESTVKDKNVLQE-LDATKEQLENLSKRYEELEAKSKADIK 540
           EME KLKS+   N + +  +ES V+  +VL E LDATKEQLE LSK+Y ELEAKSKAD+K
Sbjct: 481 EMEIKLKSELGRNSYQDLTKESIVQQNDVLLENLDATKEQLEILSKQYGELEAKSKADVK 540

Query: 541 VLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLN 600
           VLVKEVK LR+SQ  LK+ELS+ + E S+TE+LL  ER+     +  R  LL +CR+L N
Sbjct: 541 VLVKEVKSLRNSQTKLKKELSESIKEHSETEKLLLHEREKREQAEVARRILLEKCRVLFN 600

Query: 601 RFQACNANLYAEEEDNVILESSSAADALALLTSSDDQISLLITEAQLLAEDSKAAASADV 660
           + Q CN +L  E E   I+ SSS+ DA   LT+SDDQ+ +L+ E + L +D  +AA  +V
Sbjct: 601 QLQECNVSLPYEYEGRTIVNSSSSTDAFNQLTTSDDQMDILLAEVENLEKDYGSAA-CNV 659

Query: 661 EKAHDNDVCTRTDNELREVIADILVDNAKLRKQVNSVLRRAL 702
           +K +D       D+E+R++IAD+ +DN +LRKQ N V R AL
Sbjct: 660 DKTNDIKDGVICDDEVRKIIADLFIDNVRLRKQTNRVTRHAL 701

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518242|ref|XP_003527788.1| PREDICTED: uncharacterized protein LOC100789039 [Glycine max]

 Score =  932 bits (2408), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/706 (65%), Positives = 562/706 (79%), Gaps = 11/706 (1%)

Query: 3   QRRSPPKHRHDGTSPLPLGMDWSPAPRKWNGRDTVWPHDPRTGWSYCVTIPSWVVLPKSR 62
           QRRSPPKHRHDGTSPLPLGMDWSPAPRK NGRDTVWPH+ RTGWSYCVTIPSW  +PKSR
Sbjct: 2   QRRSPPKHRHDGTSPLPLGMDWSPAPRKLNGRDTVWPHNHRTGWSYCVTIPSWAFVPKSR 61

Query: 63  DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRM 122
           +SDP+VFYRVQVG+QSPEGIT   GVLRRFN+FLKLF D+KK FP+KNIPPAPPKGLLR+
Sbjct: 62  NSDPIVFYRVQVGVQSPEGITKVHGVLRRFNDFLKLFADIKKEFPRKNIPPAPPKGLLRL 121

Query: 123 KSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAARSSFQDVNQNASEANPSS 182
           KSRALLEERRCSLEEW+ KLLSDID+SR  +VASFLELEAAARSSFQD NQ  SE +P S
Sbjct: 122 KSRALLEERRCSLEEWIAKLLSDIDISRCTAVASFLELEAAARSSFQDANQQNSETDPDS 181

Query: 183 NSTISSLQMPSDSGFTLI-GSSSVTSDYGSDTAYETSELGTPKLGRDNGSEIGVEDLTLD 241
           ++T+ S+Q P  S  +L+ GSSSV SDYGSDTAYE S+LGTP++GRD+ SE+G +DLTLD
Sbjct: 182 SNTVYSVQSPLQSSLSLVAGSSSVASDYGSDTAYEPSDLGTPRIGRDDNSEVGTDDLTLD 241

Query: 242 EDLTSPIENLVKYGMSNIDEGLFMGQTILEQLEGFPRHKAHAQQHPNNATGKNVNNGNVS 301
           ED+T+PIE LVKYG++NIDEGLFMGQTILEQLEG PRHKA+A ++ N    K+ NNGN+ 
Sbjct: 242 EDMTNPIEKLVKYGITNIDEGLFMGQTILEQLEGLPRHKANA-RYVNYVAEKDKNNGNLY 300

Query: 302 KALFLSGNGMDLFSEPEPGKVIGHARKLSADSVRSDASSIRGSEISNFGIPNSSADGSPG 361
            +  L+ N M+LFSEP   KV GH RKLS +SV SD SSIRGS++SNFGIP+SS DGS  
Sbjct: 301 DSSLLANNNMELFSEPGHAKVFGHVRKLSNESVESDGSSIRGSDMSNFGIPSSSGDGSHD 360

Query: 362 LHRCAEVSSSREILGNSDLQFSGDAELVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLIT 421
           L   A VS   +I+G++  + +GD +LV+PLDQR+KL+R+L TM+RRL TAKTDMEDLI 
Sbjct: 361 LPGSALVSRETDIMGHTKSKSTGDTQLVLPLDQRNKLNRILSTMQRRLGTAKTDMEDLIV 420

Query: 422 RLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSL 481
           RLNQE+  KD+L TK+KDLEVELETTKQK+KE LQQAIL ERER TQMQWDMEELR+KSL
Sbjct: 421 RLNQEIAAKDFLATKLKDLEVELETTKQKNKENLQQAILIERERFTQMQWDMEELRRKSL 480

Query: 482 EMEWKLKSKQDGNPHAESMEESTVKDKNVLQE-LDATKEQLENLSKRYEELEAKSKADIK 540
           EME KLKS+   N + +  +ES V+  +VL E LDATKEQLE LSK+Y ELEAKSKAD+K
Sbjct: 481 EMEMKLKSESGRNSYQDLTKESIVQQNDVLYENLDATKEQLEILSKQYGELEAKSKADVK 540

Query: 541 VLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLN 600
           VLVKEVK LR+SQ  LK+ELS+ + E S+TE+LL  ER+     +  R KLL +CR+L N
Sbjct: 541 VLVKEVKSLRNSQTKLKKELSESIKEHSETEKLLLHEREKREQAEAARRKLLEKCRVLFN 600

Query: 601 RFQACNANLYAEEEDNVILESSSAADALALLTSSDDQISLLITEAQLLAEDSKAAASADV 660
           + Q CN +L  E ED  I+ SSS+ DA   LT+SDDQ+ +L+ E + L +D  +AAS +V
Sbjct: 601 QLQECNVSLPYEYEDRTIVNSSSSTDAFNQLTTSDDQMDILLAEVENLEKDYGSAAS-NV 659

Query: 661 EKA----HDNDVCTRTDNELREVIADILVDNAKLRKQVNSVLRRAL 702
           +K      D  +C   D+E+R++IAD+ +DN +LRKQ N V R+AL
Sbjct: 660 DKTTNDIKDGVIC---DDEVRKIIADLFIDNVRLRKQTNRVTRQAL 702

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466161|ref|XP_003603365.1| hypothetical protein MTR_3g106770 [Medicago truncatula] gi|355492413|gb|AES73616.1| hypothetical protein MTR_3g106770 [Medicago truncatula]

 Score =  897 bits (2317), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/702 (64%), Positives = 547/702 (77%), Gaps = 4/702 (0%)

Query: 3   QRRSPPKHRHDGTSPLPLGMDWSPAPRKWNGRDTVWPHDPRTGWSYCVTIPSWVVLPKSR 62
           QRRSPPKHRHDGTSPLPLGMDWSPAPRKWNGRDT WPH+ RTGWSYCV IPSWV +PKS+
Sbjct: 2   QRRSPPKHRHDGTSPLPLGMDWSPAPRKWNGRDTEWPHNHRTGWSYCVIIPSWVFVPKSK 61

Query: 63  DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRM 122
           +SDP+VFYR+QVG+QSPEGIT   GVLRRFN+FL L+ DLKK FP +NIPPAPPKGL+R+
Sbjct: 62  NSDPIVFYRLQVGIQSPEGITNIHGVLRRFNDFLNLYVDLKKEFPGRNIPPAPPKGLMRL 121

Query: 123 KSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAARSSFQDVNQNASEANPSS 182
           KSRALLEERR SLEEW+TKLLSDID+SR   VASF ELE AARSSFQD +Q  S  +P S
Sbjct: 122 KSRALLEERRRSLEEWITKLLSDIDISRCAPVASFFELETAARSSFQDASQQNSVKDPDS 181

Query: 183 NSTISSLQMPSDSGFTLI-GSSSVTSDYGSDTAYETSELGTPKLGRDNGSEIGVEDLTLD 241
           N+   S+Q    SG +L  GSSSV SDYGSDT Y+ SE+GTP++G+D+ SE+G +DLTLD
Sbjct: 182 NNRDYSVQSSLHSGLSLTAGSSSVASDYGSDTPYDASEVGTPRIGQDDNSEVGTDDLTLD 241

Query: 242 EDLTSPIENLVKYGMSNIDEGLFMGQTILEQLEGFPRHKAHAQQHPNNATGKNVNNGNVS 301
           ED T+PIE LVKYG+SNIDEGLFMGQTILEQLEG PRHK +A +H NN TGK+ +NGN  
Sbjct: 242 EDTTNPIEKLVKYGISNIDEGLFMGQTILEQLEGLPRHKVNA-RHGNNVTGKDRSNGNSY 300

Query: 302 KALFLSGNGMDLFSEPEPGKVIGHARKLSADSVRSDASSIRGSEISNFGIPNSSADGSPG 361
            +  L  N M+LFS+P   KV+GH RKLS +SV SD SSIRGS+ISNFGIPNSS DGS  
Sbjct: 301 DSSLLGNNTMELFSQPGHAKVLGHIRKLSNESVGSDGSSIRGSDISNFGIPNSSGDGSVD 360

Query: 362 LHRCAEVSSSREILGNSDLQFSGDAELVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLIT 421
           L   A VS   +I+G++ L+ SGDA+LV+PLDQR+KL+R+L TM+RRLVTAKTDMEDLI 
Sbjct: 361 LPGSASVSRETDIVGHTKLKSSGDAQLVLPLDQRNKLNRILSTMQRRLVTAKTDMEDLIV 420

Query: 422 RLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSL 481
           RLNQE+  KD+L TKVKDLEVELET+KQK+KE LQQAIL ERER TQMQWDMEELR+KSL
Sbjct: 421 RLNQEIAAKDFLTTKVKDLEVELETSKQKNKENLQQAILIERERFTQMQWDMEELRRKSL 480

Query: 482 EMEWKLKSKQDGNPHAESMEESTVKDKNV-LQELDATKEQLENLSKRYEELEAKSKADIK 540
           EME KLKS+  GN   +  +ES V+  +V LQ+LDA +EQLE LSK+Y ELEAKSKADIK
Sbjct: 481 EMEMKLKSESGGNVGQDLTKESIVQQNDVLLQDLDAAREQLEILSKQYGELEAKSKADIK 540

Query: 541 VLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLN 600
           VLVKEVK LRSSQ  LK+ELS+ + EK + E+LL  ER+     +    K L +C +LL 
Sbjct: 541 VLVKEVKSLRSSQTELKKELSESIKEKYEAEKLLLHEREKSEQAEIAWRKQLEKCGLLLK 600

Query: 601 RFQACNANLYAEEEDNVILESSSAADALALLTSSDDQISLLITEAQLLAEDSKAAASADV 660
           + Q C+  L  E+ED   L+SSS+ DA   L +SDDQI +L+ E + L +D+ +AAS +V
Sbjct: 601 QLQECSVELPYEDEDRTFLQSSSSTDAFNKLKTSDDQIDILLAEVENLEKDAGSAAS-NV 659

Query: 661 EKAHDNDVCTRTDNELREVIADILVDNAKLRKQVNSVLRRAL 702
           +K +D        +E+R++I+D+ +DN +LRKQ N V R  L
Sbjct: 660 DKTNDIKDGVICGDEMRKIISDLFLDNVRLRKQTNRVTRHML 701

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449524486|ref|XP_004169253.1| PREDICTED: uncharacterized protein LOC101226924 [Cucumis sativus]

 Score =  865 bits (2236), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/704 (65%), Positives = 547/704 (77%), Gaps = 12/704 (1%)

Query: 5   RSPPKHRHDGTSPLPLGMDWSPAPRKWNGRDTVWPHDPRTGWSYCVTIPSWVVLPKSRDS 64
           RSPPKHRHDGTSPLPLGMDWSP PRKWNG+DTVWPHD  TGWSYCV IPSWV LPK+R +
Sbjct: 5   RSPPKHRHDGTSPLPLGMDWSPPPRKWNGKDTVWPHDHHTGWSYCVIIPSWVALPKTRAA 64

Query: 65  DPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKS 124
           DP+VFYRVQV +QSPEGIT  RGVLRRFN+F+ LF+D+KKAFPKK IPPAPPKG+LRMK+
Sbjct: 65  DPIVFYRVQVAVQSPEGITAMRGVLRRFNDFMNLFSDVKKAFPKKMIPPAPPKGILRMKT 124

Query: 125 RALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAARSSFQDVNQNASEANPSSNS 184
           RALLEERR SLEEW+TKLLSDID+SRSV+VASFLELEAAARSSFQ+ NQ  S   P  +S
Sbjct: 125 RALLEERRRSLEEWLTKLLSDIDISRSVAVASFLELEAAARSSFQNDNQGPSGEYPDYSS 184

Query: 185 TISSLQMPSD-SGFTLIGSSSVTSDYGSDTAYETSELGTPKLGRDNGSEIGVEDLTLDED 243
            IS+ Q P + S  TLIG  S+ SDYGSDTAYE SELGT  LGRD+ SEI ++DL LD+D
Sbjct: 185 KISAHQSPPNSSSSTLIGGLSLASDYGSDTAYEASELGTASLGRDDNSEIAIDDLALDDD 244

Query: 244 LTSPIENLVKYGMSNIDEGLFMGQTILEQLEGFPRHKAHAQQHPNNATGKNVNNGNVSKA 303
           L+SPIE LVKYG+SNIDEGLFMGQTILEQLEG P+HKAH + + N   G   +NGN SKA
Sbjct: 245 LSSPIEKLVKYGLSNIDEGLFMGQTILEQLEGLPKHKAHPRYNNNLKDG---HNGNTSKA 301

Query: 304 LFLSGNGMDLFSEPEPGKVIGHARKLSADSVRSDASSIRGSEISNFGIPNSSADGSPGLH 363
            +L  NG+  F EPE GKVIGHARKLS +S+ SDASS+RG EIS+  + NS  +GS   H
Sbjct: 302 SYLDKNGLVPFVEPEHGKVIGHARKLSDESIASDASSLRGGEISSVSLRNSVGNGSLD-H 360

Query: 364 RCAEVSSSREILGNSDLQFSGDAELVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRL 423
             AEVS++ E   N +L FS DA L+ P D RHKL+RVL TM +RLVTAKTDMEDLI+RL
Sbjct: 361 SGAEVSNAIEFHTNPELHFSHDA-LLFPKDHRHKLNRVLSTMHQRLVTAKTDMEDLISRL 419

Query: 424 NQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEM 483
           NQE+TVKDYL T VKDLEVELET KQKSKE LQQAIL ERE++TQMQW+MEELR +SLEM
Sbjct: 420 NQEITVKDYLTTMVKDLEVELETNKQKSKENLQQAILMEREKVTQMQWEMEELRHRSLEM 479

Query: 484 EWKLKSKQDGNPHAESMEESTVKDKNVLQ-ELDATKEQLENLSKRYEELEAKSKADIKVL 542
           E KLKSK+  +  +   EE T+++K  LQ EL++TKEQL+N+SK++EELE KSKADI+VL
Sbjct: 480 ELKLKSKEKRSSFSVPTEEFTLQEKVALQEELESTKEQLKNVSKQFEELEGKSKADIRVL 539

Query: 543 VKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRF 602
           VKEVK LRS+Q  LKQELSQ L +KS+TEELLQQER+T  H      KLL EC+ L  R 
Sbjct: 540 VKEVKSLRSTQAKLKQELSQTLQQKSETEELLQQERETRQHANKAWSKLLSECKSLHARL 599

Query: 603 QACNANLYAEEEDNVILESSSAADALALLTSSDDQISLLITEAQLLAEDSKAAAS-ADVE 661
           + C+ N   +++ N   ESSS ++AL LLT+SDDQ++LL+ E  LL++  + A   AD +
Sbjct: 600 KKCSMNFSPDDDYNHDAESSSLSNALDLLTTSDDQLNLLLAEVNLLSDGIQTATPMADDD 659

Query: 662 KAHDNDVCTRTDNELREVIADILVDNAKLRKQVNSVLRRALLFR 705
              DND   + D ELR V+ DI  +N++LRKQVNS  R  +  R
Sbjct: 660 ---DND-SIKVDAELRMVLKDIFTENSRLRKQVNSYFRHNMRLR 699

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437156|ref|XP_004136358.1| PREDICTED: uncharacterized protein LOC101209349 [Cucumis sativus]

 Score =  849 bits (2193), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/706 (65%), Positives = 549/706 (77%), Gaps = 14/706 (1%)

Query: 5   RSPPKHRHDGTSPLPLGMDWSPAPRKWNGRDTVWPHDPRTGWSYCVTIPSWVVLPKSRDS 64
           RSPPKHRHDGTSPLPLGMDWSP PRKWNG+DTVWPHD  TGWSYCV IPSWV LPK+R +
Sbjct: 5   RSPPKHRHDGTSPLPLGMDWSPPPRKWNGKDTVWPHDHHTGWSYCVIIPSWVALPKTRAA 64

Query: 65  DPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKS 124
           DP+VFYRVQV +QSPEGIT  RGVLRRFN+F+ LF+D+KKAFPKK IPPAPPKG+LRMK+
Sbjct: 65  DPIVFYRVQVAVQSPEGITAMRGVLRRFNDFMNLFSDVKKAFPKKMIPPAPPKGILRMKT 124

Query: 125 RALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAARSSFQDVNQNASEANPSSNS 184
           RALLEERR SLEEW+TKLLSDID+SRSV+VASFLELEAAARSSFQ+ NQ  S   P  +S
Sbjct: 125 RALLEERRRSLEEWLTKLLSDIDISRSVAVASFLELEAAARSSFQNDNQGPSGEYPDYSS 184

Query: 185 TISSLQMPSD-SGFTLIGSSSVTSDYGSDTAYETSELGTPKLGRDNGSEIGVEDLTLDED 243
            IS+ Q P + S  TLIG  S+ SDYGSDTAYE SELGT  LGRD+ SEI ++DL LD+D
Sbjct: 185 KISAHQSPPNSSSSTLIGGLSLASDYGSDTAYEASELGTASLGRDDNSEIAIDDLALDDD 244

Query: 244 LTSPIENLVKYGMSNIDEGLFMGQTILEQLEGFPRHKAHAQQHPNNATGKNVNNGNVSKA 303
           L+SPIE LVKYG+SNIDEGLFMGQTILEQLEG P+HKAH + + N   G   +NGN SKA
Sbjct: 245 LSSPIEKLVKYGLSNIDEGLFMGQTILEQLEGLPKHKAHPRYNNNLKDG---HNGNTSKA 301

Query: 304 LFLSGNGMDLFSEPEPGKVIGHARKLSADSVRSDASSIRGSEISNFGIPNSSADGSPGLH 363
            +L  NG+  F EPE GKVIGHARKLS +S+ SDASS+RG EIS+  + NS  +GS   H
Sbjct: 302 SYLDKNGLVPFVEPEHGKVIGHARKLSDESIASDASSLRGGEISSVSLRNSVGNGSLD-H 360

Query: 364 RCAEVSSSREILGNSDLQFSGDAELVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRL 423
             AEVS++ E   N +L FS DA L+ P D RHKL+RVL TM +RLVTAKTDMEDLI+RL
Sbjct: 361 SGAEVSNAIEFHTNPELHFSHDA-LLFPKDHRHKLNRVLSTMHQRLVTAKTDMEDLISRL 419

Query: 424 NQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEM 483
           NQE+TVKDYL T VKDLEVELET KQKSKE LQQAIL ERE++TQMQW+MEELR +SLEM
Sbjct: 420 NQEITVKDYLTTMVKDLEVELETNKQKSKENLQQAILMEREKVTQMQWEMEELRHRSLEM 479

Query: 484 EWKLKSKQDGNPHAESM--EESTVKDKNVLQ-ELDATKEQLENLSKRYEELEAKSKADIK 540
           E KLKSK+    ++ S+  EE T+++K  LQ EL++TKEQL+N+SK++EELE KSKADI+
Sbjct: 480 ELKLKSKEKKGENSFSVPTEEFTLQEKVALQEELESTKEQLKNVSKQFEELEGKSKADIR 539

Query: 541 VLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLN 600
           VLVKEVK LRS+Q  LKQELSQ L +KS+TEELLQQER+T  H      KLL EC+ L  
Sbjct: 540 VLVKEVKSLRSTQAKLKQELSQTLQQKSETEELLQQERETRQHANKAWSKLLSECKSLHA 599

Query: 601 RFQACNANLYAEEEDNVILESSSAADALALLTSSDDQISLLITEAQLLAEDSKAAAS-AD 659
           R + C+ N   +++ N   ESSS ++AL LLT+SDDQ++LL+ E  LL++  + A   AD
Sbjct: 600 RLKKCSMNFSPDDDYNHDAESSSLSNALDLLTTSDDQLNLLLAEVNLLSDGIQTATPMAD 659

Query: 660 VEKAHDNDVCTRTDNELREVIADILVDNAKLRKQVNSVLRRALLFR 705
            +   DND   + D ELR V+ DI  +N++LRKQVNS  R  +  R
Sbjct: 660 DD---DND-SIKVDAELRMVLKDIFTENSRLRKQVNSYFRHNMRLR 701

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42567325|ref|NP_567888.2| Phox (PX) domain-containing protein [Arabidopsis thaliana] gi|332660612|gb|AEE86012.1| Phox (PX) domain-containing protein [Arabidopsis thaliana]

 Score =  837 bits (2162), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/708 (62%), Positives = 540/708 (76%), Gaps = 19/708 (2%)

Query: 1   MNQRRSPPKHRHDGTSPLPLGMDWSPAPRKWNGRDTVWPHDPRTGWSYCVTIPSWVVLPK 60
           M QRRSPPKHRHDGTSPLPLGMDWSP PRKWNGRDTVWPHDPRTGWSYCVTIPSW+VLPK
Sbjct: 1   MMQRRSPPKHRHDGTSPLPLGMDWSPPPRKWNGRDTVWPHDPRTGWSYCVTIPSWIVLPK 60

Query: 61  SRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL 120
           SR+SDPVVFYRVQV +QSPEGITT RGVLRRFN+FLKL TDLK+ FP+K  P APPKGLL
Sbjct: 61  SRNSDPVVFYRVQVSVQSPEGITTMRGVLRRFNDFLKLLTDLKRTFPRKGFPSAPPKGLL 120

Query: 121 RMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAARSSFQDVNQNASEANP 180
           RMKSRA+LEERRCSLEEW+TKLLSDI+L+RSV VASFLELEAAARS+ QDV+QNAS++N 
Sbjct: 121 RMKSRAVLEERRCSLEEWITKLLSDIELARSVVVASFLELEAAARSACQDVDQNASDSNN 180

Query: 181 SSNSTISS-LQMPSDSGFTLIGSSSVTSDYGSDTAYETSELGTPKLGRDNGSEIGVEDLT 239
             +ST SS +  PS S F   G S++TSDYGSDTAYETSE+G+P +G+D+ SEIG EDLT
Sbjct: 181 DRSSTSSSPMVHPSLSLFH-AGGSTLTSDYGSDTAYETSEVGSPSVGQDDISEIGTEDLT 239

Query: 240 LDED--LTSPIENLVKYGMSNIDEGLFMGQTILEQLEGFPRHKAHAQQHPNNATGKNVNN 297
           LDED  LT+PIE LV + MSNIDEGL M +TILEQLE FP+HK  + ++ NN  GK+V N
Sbjct: 240 LDEDLTLTNPIEKLVNFSMSNIDEGLSMSETILEQLEDFPKHKVRS-RYVNNILGKDVYN 298

Query: 298 GNVSKALFLSGNGMDLFSEPEPG-KVIGHARKLSADSVRSDASSIRGSEISNFGIPNSSA 356
           GN SK +FL+ NG  L SEPEP    + H R  SA+       ++   + S  G+  SS 
Sbjct: 299 GNASKGVFLANNGSRLLSEPEPSTHSVMHDRNDSAERF-----ALHTGQTSTSGLLISSR 353

Query: 357 DGSPGLHRCAEVSSSREILGNSDLQFSGDAELVIPLDQRHKLSRVLLTMERRLVTAKTDM 416
           D    L +   VS    ++ N + Q  G A++V+PL+ R+KL+R+LL    RLV AKTDM
Sbjct: 354 DSHLDLRQGPGVSLGTGLVCNPERQ--GSAQIVLPLELRNKLNRILLATNERLVNAKTDM 411

Query: 417 EDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEEL 476
           EDLI RLNQE+ VKDYL  KV DLE ELETTKQ+SKE L+QAI+SERER  QMQWDMEEL
Sbjct: 412 EDLIARLNQEIAVKDYLNKKVNDLEGELETTKQRSKENLEQAIMSERERFNQMQWDMEEL 471

Query: 477 RQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVL-QELDATKEQLENLSKRYEELEAKS 535
           RQKS EME KLKS++DG+ HAE   +ST+ +K+VL +ELDA K+QLE+LS+RYEELEAKS
Sbjct: 472 RQKSYEMEMKLKSREDGSSHAEPTVQSTISEKHVLSKELDARKQQLEDLSRRYEELEAKS 531

Query: 536 KADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHEC 595
           KAD+KVLVKEVK LR S + L++EL+  L +K+  E+LLQ+ER+   +    R+KLL +C
Sbjct: 532 KADMKVLVKEVKSLRRSHVELEKELTHSLTDKTNAEKLLQEERKLLENTVAARKKLLSDC 591

Query: 596 RILLNRFQACNANLYAEEEDNVILESSSAADALALLTSSDDQISLLITEAQLLAEDSKAA 655
           RIL +R +  N NL  +   N + +S++ +D L LL+ SDDQI     EAQLL+   + A
Sbjct: 592 RILHDRLKEYNLNLSMDGNGNFVDDSTTISDVLRLLSISDDQIE----EAQLLSGFDENA 647

Query: 656 ASADVEKAHDNDVCTRT-DNELREVIADILVDNAKLRKQVNSVLRRAL 702
           A+ D++K    D  TR  ++ELR+++A+I V+NAKLRKQVNS + RAL
Sbjct: 648 AAEDIDKTLSMDTETRIMEDELRKILANIFVENAKLRKQVNSAMLRAL 695

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	724
TAIR|locus:2116687	723	AT4G32160 [Arabidopsis thalian	0.951	0.952	0.598	1.4e-208
TAIR|locus:2040030	643	AT2G25350 [Arabidopsis thalian	0.824	0.928	0.582	3e-181
TAIR|locus:2093915	755	AT3G15920 [Arabidopsis thalian	0.360	0.345	0.551	2.1e-143
DICTYBASE|DDB_G0274893	915	DDB_G0274893 "unknown" [Dictyo	0.262	0.207	0.266	2.9e-08
UNIPROTKB|F1NUB2	1660	CDC42BPA "Uncharacterized prot	0.295	0.128	0.297	6e-08
UNIPROTKB|E1BWT5	1732	CDC42BPA "Uncharacterized prot	0.295	0.123	0.297	6.3e-08
TAIR|locus:2031875	1128	LINC2 "LITTLE NUCLEI2" [Arabid	0.338	0.217	0.260	1.7e-07
MGI|MGI:1098258	1387	Kif15 "kinesin family member 1	0.255	0.133	0.274	2.8e-07
ZFIN|ZDB-GENE-040426-57	1233	smc1al "structural maintenance	0.412	0.242	0.232	8.3e-07
UNIPROTKB|D4ABD7	1976	Trip11 "Protein Trip11" [Rattu	0.490	0.179	0.216	8.9e-07

TAIR|locus:2116687 AT4G32160 [Arabidopsis thaliana (taxid:3702)]

 Score = 2017 (715.1 bits), Expect = 1.4e-208, P = 1.4e-208
 Identities = 424/708 (59%), Positives = 519/708 (73%)

Query:     1 MNQRRSPPKHRHDGTSPLPLGMDWSPAPRKWNGRDTVWPHDPRTGWSYCVTIPSWVVLPK 60
             M QRRSPPKHRHDGTSPLPLGMDWSP PRKWNGRDTVWPHDPRTGWSYCVTIPSW+VLPK
Sbjct:     1 MMQRRSPPKHRHDGTSPLPLGMDWSPPPRKWNGRDTVWPHDPRTGWSYCVTIPSWIVLPK 60

Query:    61 SRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL 120
             SR+SDPVVFYRVQV +QSPEGITT RGVLRRFN+FLKL TDLK+ FP+K  P APPKGLL
Sbjct:    61 SRNSDPVVFYRVQVSVQSPEGITTMRGVLRRFNDFLKLLTDLKRTFPRKGFPSAPPKGLL 120

Query:   121 RMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAARSSFQDVNQNASEANP 180
             RMKSRA+LEERRCSLEEW+TKLLSDI+L+RSV VASFLELEAAARS+ QDV+QNAS++N 
Sbjct:   121 RMKSRAVLEERRCSLEEWITKLLSDIELARSVVVASFLELEAAARSACQDVDQNASDSNN 180

Query:   181 SSNSTISSLQM-PSDSGFTLIGSSSVTSDYGSDTAYETSELGTPKLGRDNGSEIGVEDLT 239
               +ST SS  + PS S F   G S++TSDYGSDTAYETSE+G+P +G+D+ SEIG EDLT
Sbjct:   181 DRSSTSSSPMVHPSLSLFHA-GGSTLTSDYGSDTAYETSEVGSPSVGQDDISEIGTEDLT 239

Query:   240 LDEDLT--SPIENLVKYGMSNIDEGLFMGQTILEQLEGFPRHKAHAQQHPXXXXXXXXXX 297
             LDEDLT  +PIE LV + MSNIDEGL M +TILEQLE FP+HK  ++ +           
Sbjct:   240 LDEDLTLTNPIEKLVNFSMSNIDEGLSMSETILEQLEDFPKHKVRSR-YVNNILGKDVYN 298

Query:   298 XXXSKALFLSGNGMDLFSEPEPGK-VIGHARKLSADSVRSDASSIRGSEISNFGIPNSSA 356
                SK +FL+ NG  L SEPEP    + H R  SA+       ++   + S  G+  SS 
Sbjct:   299 GNASKGVFLANNGSRLLSEPEPSTHSVMHDRNDSAERF-----ALHTGQTSTSGLLISSR 353

Query:   357 DGSPGLHRCAEVSSSREILGNSDLQFSGDAELVIPLDQRHKLSRVLLTMERRLVTAKTDM 416
             D    L +   VS    ++ N + Q  G A++V+PL+ R+KL+R+LL    RLV AKTDM
Sbjct:   354 DSHLDLRQGPGVSLGTGLVCNPERQ--GSAQIVLPLELRNKLNRILLATNERLVNAKTDM 411

Query:   417 EDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEEL 476
             EDLI RLNQE+ VKDYL  KV DLE ELETTKQ+SKE L+QAI+SERER  QMQWDMEEL
Sbjct:   412 EDLIARLNQEIAVKDYLNKKVNDLEGELETTKQRSKENLEQAIMSERERFNQMQWDMEEL 471

Query:   477 RQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVL-QELDATKEQLENLSKRYEELEAKS 535
             RQKS EME KLKS++DG+ HAE   +ST+ +K+VL +ELDA K+QLE+LS+RYEELEAKS
Sbjct:   472 RQKSYEMEMKLKSREDGSSHAEPTVQSTISEKHVLSKELDARKQQLEDLSRRYEELEAKS 531

Query:   536 KADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHEC 595
             KAD+KVLVKEVK LR S + L++EL+  L +K+  E+LLQ+ER+   +    R+KLL +C
Sbjct:   532 KADMKVLVKEVKSLRRSHVELEKELTHSLTDKTNAEKLLQEERKLLENTVAARKKLLSDC 591

Query:   596 RILLNRFQACNANLYAEEEDNVILEXXXXXXXXXXXXXXXXQISLLITEAQLLAEDSKAA 655
             RIL +R +  N NL  +   N + +                QI     EAQLL+   + A
Sbjct:   592 RILHDRLKEYNLNLSMDGNGNFVDDSTTISDVLRLLSISDDQIE----EAQLLSGFDENA 647

Query:   656 ASADVEKAHDNDVCTRT-DNELREVIADILVDNAKLRKQVNSVLRRAL 702
             A+ D++K    D  TR  ++ELR+++A+I V+NAKLRKQVNS + RAL
Sbjct:   648 AAEDIDKTLSMDTETRIMEDELRKILANIFVENAKLRKQVNSAMLRAL 695

GO:0005576 "extracellular region" evidence=ISM

GO:0007154 "cell communication" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2040030 AT2G25350 [Arabidopsis thaliana (taxid:3702)]

 Score = 1759 (624.3 bits), Expect = 3.0e-181, P = 3.0e-181
 Identities = 359/616 (58%), Positives = 453/616 (73%)

Query:     3 QRRSPPKHRHDGTSPLPLGMDWSPAPRKWNGRDTVWPHDPRTGWSYCVTIPSWVVLPKSR 62
             QRRSPPKHRHDG SPLPLGMDWSP PR WNGRDT+WPHD RTGWSYCVTIPSW +L KS+
Sbjct:     2 QRRSPPKHRHDGASPLPLGMDWSPPPRNWNGRDTIWPHDFRTGWSYCVTIPSWTLLSKSK 61

Query:    63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRM 122
             +SDP+VFYRVQV +QSPEG++T RG+LRRFN+F+KL  DLK+AFP+K+ P APPKG LR+
Sbjct:    62 NSDPIVFYRVQVSVQSPEGVSTMRGILRRFNDFVKLLADLKRAFPRKSFPSAPPKGFLRV 121

Query:   123 KSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAARSSFQDVNQNASEANPSS 182
             KSR +LEERRCSLE+WMTKLLSDI+L+RSV VASFLELEA ARS+ Q V+QNAS++N   
Sbjct:   122 KSRDMLEERRCSLEDWMTKLLSDIELARSVVVASFLELEATARSACQVVDQNASDSNDDG 181

Query:   183 NST-ISSLQMPSDSGFTLIGSSSVTSDYGSDTAYETSELGTPKLGRDNGSEIGVEDLTLD 241
             NST +SSL  P+ SG    GSS ++SDYGSDTAYETSELG+  LG+D+ SE    DLTLD
Sbjct:   182 NSTSLSSLVHPN-SG----GSSLLSSDYGSDTAYETSELGSASLGQDDVSETDTGDLTLD 236

Query:   242 EDLTSPIENLVKYGMSNIDEGLFMGQTILEQLEGFPRHKAHAQQHPXXXXXXXXXXXXXS 301
             EDLT+P E LVK+ MSNIDEGL M QTI+EQLE FP+H+ H   +              S
Sbjct:   237 EDLTNPTEKLVKFSMSNIDEGLSMSQTIIEQLEDFPKHRVHLG-YANDITETNSYNGKAS 295

Query:   302 KALFLSGNGMDLFSEPEPGKVIGHARKLSADSVRSDASSIRGSEISNFGIPNSSADGSPG 361
             K +F + N +   SE E    + H RKLS +S  +D  S+   E S   I +S       
Sbjct:   296 KGVFRANNDLRCRSESETSHSVMHDRKLSLES--ADGVSLLAGETSTSSILSSI------ 347

Query:   362 LHRCAEVSSSREILGNSDLQFSGDAELVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLIT 421
             +H   +V+    + GN  L+  G+  +V+PL    KL+R+LLTM  RL+ +KTDMEDLI 
Sbjct:   348 VHSQLDVNHDISV-GN--LEIPGNGRIVLPLKMHSKLNRILLTMNERLLNSKTDMEDLIA 404

Query:   422 RLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSL 481
             RLNQE  VK+YL  KV DLEVELETTKQ++KE L+QA+++ER+ +T+MQWDMEELRQK+ 
Sbjct:   405 RLNQETAVKEYLNRKVDDLEVELETTKQRNKENLEQALMTERQSVTKMQWDMEELRQKTF 464

Query:   482 EMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIK 540
             EME KLKSK+DG+  +++   ST+ + + +LQE+DATK+QLE+LS+RY ELEAKSKADIK
Sbjct:   465 EMELKLKSKEDGSSDSKTSGNSTISESHELLQEMDATKQQLEDLSRRYVELEAKSKADIK 524

Query:   541 VLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLN 600
             VLV+EVK LR S + +++EL++ L EKS TE+LLQQER    +    R +L  +C IL +
Sbjct:   525 VLVREVKSLRRSHMEMEKELTRSLTEKSDTEKLLQQERIIVENTLEARRRLYSDCEILHD 584

Query:   601 RFQACNANLYAEEEDN 616
             R +  N NL  +E  N
Sbjct:   585 RLKVNNTNLSMDESSN 600

GO:0005634 "nucleus" evidence=ISM

GO:0007154 "cell communication" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA;ISS

GO:0035556 "intracellular signal transduction" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0046685 "response to arsenic-containing substance" evidence=RCA

TAIR|locus:2093915 AT3G15920 [Arabidopsis thaliana (taxid:3702)]

 Score = 719 (258.2 bits), Expect = 2.1e-143, Sum P(2) = 2.1e-143
 Identities = 150/272 (55%), Positives = 191/272 (70%)

Query:     2 NQRRSPPKHRHDGTSPLPLGMDWSPAPRKWNGRDTVWPHDPRTGWSYCVTIPSWVVLPKS 61
             + R SPP HRHDG SPLPLGMDWS  PR   GRDTVWPHD RTGWSYCVT+PSWV LPKS
Sbjct:    62 DSRASPP-HRHDGRSPLPLGMDWSSPPRHLEGRDTVWPHDHRTGWSYCVTVPSWVDLPKS 120

Query:    62 RDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR 121
               SDP VFYRVQV +QSPEGIT+ R VLRRFN+FL+L++ +KK F KK++P APPK +LR
Sbjct:   121 SVSDPAVFYRVQVAIQSPEGITSARLVLRRFNDFLELYSSIKKEFVKKSLPQAPPKKILR 180

Query:   122 MKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAARSSFQDVNQNASEANPS 181
             M+++ LLEERRCSLE+WM +LLSDID+SRS  +A+FLELEAA RS F D  Q   +    
Sbjct:   181 MRNQTLLEERRCSLEDWMNRLLSDIDISRSALIATFLELEAAVRSYFNDEYQETED---- 236

Query:   182 SNSTISSLQMPSDSGFTLIGSSSVTSDYGSDTAYETSELGTPKLGRDNGSEIGVEDLTLD 241
             ++  I SL +P+     + GSSSVT D+ +D+A ETS   T K    N   +   + T  
Sbjct:   237 TSGDIPSL-LPTTIS-DVPGSSSVTIDHDNDSADETSNASTMKHDEANLKNLFSRNSTAV 294

Query:   242 EDLTSPIENLVKYGMSNIDEGLFMGQTILEQL 273
             +++T   E + +YG+  +D+  F  Q  +E+L
Sbjct:   295 DNVTDWHELITEYGL--LDQSSF--QEKVERL 322

GO:0005634 "nucleus" evidence=ISM

GO:0007154 "cell communication" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA;ISS

GO:0035556 "intracellular signal transduction" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

DICTYBASE|DDB_G0274893 DDB_G0274893 "unknown" [Dictyostelium discoideum (taxid:44689)]

 Score = 164 (62.8 bits), Expect = 2.9e-08, P = 2.9e-08
 Identities = 52/195 (26%), Positives = 94/195 (48%)

Query:   397 KLSRVLLTMERRLVTAKTDMED-LITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETL 455
             +L  +L   E +L+   T ++D L+      + VK  L      LE E++  K+K  E L
Sbjct:   127 ELKELLKQSENKLLLELTSVKDTLLIESQSHLQVKGILKETEDKLEQEIKINKEKL-EKL 185

Query:   456 QQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQ-EL 514
              + I   ++ + Q+Q  +E  + +  + + + + K       +S  E  +++   L+ E+
Sbjct:   186 DKEINEHKDSINQLQERLESTQDQLSKSQQENQEKSKDIEELKSQLELNLQEIERLKIEI 245

Query:   515 DATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQ--ELSQMLNEKSKTEE 572
             ++ K++ ENL   Y +L  K+K  IK L +EVK     QI L +  E +Q + E  + EE
Sbjct:   246 NSEKQKFENLQDTYNQLIEKNKEIIKSLEEEVKIKDELQIALNELKEKNQEITEIKEKEE 305

Query:   573 LLQQERQTHNHMKTV 587
             +  QE    N   T+
Sbjct:   306 IKNQELTKENQELTL 320

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F1NUB2 CDC42BPA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 164 (62.8 bits), Expect = 6.0e-08, P = 6.0e-08
 Identities = 69/232 (29%), Positives = 103/232 (44%)

Query:   371 SREILGNSDLQFSGDAELVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVK 430
             ++E+  +SD   S   EL     QR    +    M  RL    +  + L  +L  +    
Sbjct:   489 NKELAESSDRLKSQAKELKDAHSQRKLAMQEFSEMNERLTDLHSQKQKLARQLRDKEEEM 548

Query:   431 DYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQW-DMEELRQKSLEMEWK-LK 488
             + +M KV+ L  EL  T++  KE   QA  +  E     +  +  E   K LE E + LK
Sbjct:   549 EVVMQKVESLRQELRRTERLKKELEVQAEAAAAEASKDRKLRERSEQYSKQLESEVEGLK 608

Query:   489 SKQDG-NPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKA----DIKVLV 543
              KQ G +P   S+E          QE+   K  LE  S  YEE  +K +     +IK L 
Sbjct:   609 QKQIGRSPGVSSIEHQ--------QEITKLKADLEKKSVFYEEELSKREIMHANEIKSLK 660

Query:   544 KEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQ---THNHMKTVREKLL 592
             KE++   S Q+ LK+E+  + ++  KT    Q ER+   T    K  REK+L
Sbjct:   661 KELRDAESQQLALKKEIMILKDKLEKTRRENQSEREEFETEFKQKYEREKIL 712

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005083 "small GTPase regulator activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0031532 "actin cytoskeleton reorganization" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E1BWT5 CDC42BPA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 164 (62.8 bits), Expect = 6.3e-08, P = 6.3e-08
 Identities = 69/232 (29%), Positives = 103/232 (44%)

Query:   371 SREILGNSDLQFSGDAELVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVK 430
             ++E+  +SD   S   EL     QR    +    M  RL    +  + L  +L  +    
Sbjct:   548 NKELAESSDRLKSQAKELKDAHSQRKLAMQEFSEMNERLTDLHSQKQKLARQLRDKEEEM 607

Query:   431 DYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQW-DMEELRQKSLEMEWK-LK 488
             + +M KV+ L  EL  T++  KE   QA  +  E     +  +  E   K LE E + LK
Sbjct:   608 EVVMQKVESLRQELRRTERLKKELEVQAEAAAAEASKDRKLRERSEQYSKQLESEVEGLK 667

Query:   489 SKQDG-NPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKA----DIKVLV 543
              KQ G +P   S+E          QE+   K  LE  S  YEE  +K +     +IK L 
Sbjct:   668 QKQIGRSPGVSSIEHQ--------QEITKLKADLEKKSVFYEEELSKREIMHANEIKSLK 719

Query:   544 KEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQ---THNHMKTVREKLL 592
             KE++   S Q+ LK+E+  + ++  KT    Q ER+   T    K  REK+L
Sbjct:   720 KELRDAESQQLALKKEIMILKDKLEKTRRENQSEREEFETEFKQKYEREKIL 771

GO:0005083 "small GTPase regulator activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007097 "nuclear migration" evidence=IEA

GO:0016477 "cell migration" evidence=IEA

GO:0031032 "actomyosin structure organization" evidence=IEA

GO:0031532 "actin cytoskeleton reorganization" evidence=IEA

GO:0042641 "actomyosin" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

TAIR|locus:2031875 LINC2 "LITTLE NUCLEI2" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 69/265 (26%), Positives = 130/265 (49%)

Query:   368 VSSSREILGNSDLQFSGDAELVIP-LDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQE 426
             +   +E+LG+  L+F  + E +   LD+  +L R +  +ER+ V      E L  R NQ 
Sbjct:   375 IDDQKEVLGSKMLEFELECEEIRKSLDK--ELQRKIEELERQKVEIDHSEEKLEKR-NQA 431

Query:   427 MTVK-DYLMTKVKDLEVELETTKQKSK--ETLQQAILSERERLTQMQWDMEELRQKSLEM 483
             M  K D +  K  DLE +L+T K++ K  +  ++ +  E+++L   +  +E+L+Q+  ++
Sbjct:   432 MNKKFDRVNEKEMDLEAKLKTIKEREKIIQAEEKRLSLEKQQLLSDKESLEDLQQEIEKI 491

Query:   484 EWKLKSKQDG-NPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKV- 541
               ++  K++      +S+E    + +  L+     K Q+E  S+ +EE  +K   ++K  
Sbjct:   492 RAEMTKKEEMIEEECKSLEIKKEEREEYLRLQSELKSQIEK-SRVHEEFLSKEVENLKQE 550

Query:   542 ---LVKEVKFLRSSQIGLKQELSQMLNEKSKTE--ELLQQERQTHNHMKTVREKLLHECR 596
                  KE + L   Q    +E  ++  EK K E  +LL+ ER        +R +++ E  
Sbjct:   551 KERFEKEWEILDEKQAVYNKERIRISEEKEKFERFQLLEGERLKKEE-SALRVQIMQELD 609

Query:   597 -ILLNRFQACNANLYAEEEDNVILE 620
              I L R ++  AN+  E E + + E
Sbjct:   610 DIRLQR-ESFEANM--EHERSALQE 631

GO:0005634 "nucleus" evidence=ISM

GO:0005654 "nucleoplasm" evidence=IDA

GO:0006997 "nucleus organization" evidence=IGI

GO:0006342 "chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

MGI|MGI:1098258 Kif15 "kinesin family member 15" [Mus musculus (taxid:10090)]

 Score = 162 (62.1 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
 Identities = 56/204 (27%), Positives = 110/204 (53%)

Query:   391 PLDQRHKLSRVLLTMERRLV---TAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETT 447
             P  Q H L+++L T E+ +     +KT ++ L+T+LN++  VK+  + ++KD   E+E  
Sbjct:  1146 PHFQAH-LAKLLETQEQEIEDGRASKTSLQHLVTKLNEDREVKNAEILRMKDQLCEMENL 1204

Query:   448 KQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKD 507
             + +S++      L E+  L Q Q D  + +Q+S +      S+Q  N H E ++E   K+
Sbjct:  1205 RLESQQ------LREKNWLLQRQLDDVKRQQESGDQSHP-DSQQLKNEHEEIIKERLAKN 1257

Query:   508 KNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEK 567
             K +++E+   K  LE +      L +K KA  + + +E++  R+ +    QE  Q+   +
Sbjct:  1258 K-LIEEMLKMKTNLEEVQSA---LHSKEKACHR-MSEEIERTRTLESRAFQEKEQL---R 1309

Query:   568 SKTEELLQQERQTHNHMKTVREKL 591
             SK EE+ ++  +T   M+ ++++L
Sbjct:  1310 SKLEEMYEERERTFLEMEMLKKQL 1333

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

ZFIN|ZDB-GENE-040426-57 smc1al "structural maintenance of chromosomes 1A, like" [Danio rerio (taxid:7955)]

 Score = 152 (58.6 bits), Expect = 8.3e-07, P = 8.3e-07
 Identities = 79/340 (23%), Positives = 155/340 (45%)

Query:   378 SDLQFSGDAELVIPLDQRHKLSRVLLTME------RRLVTAKT-DMEDLITRLNQEMTVK 430
             SDL+ +    L + + ++ KL   L          +R++ ++  DM+DL  R+N    V+
Sbjct:   717 SDLEQTKTRHLSLNMQEKSKLESELANFGPRINDIKRIIQSRERDMKDLKDRMN---VVE 773

Query:   431 DYLMTKV-KDLEV----ELETTKQKSKETLQQAIL---SERERLT-QMQWDMEELR--QK 479
             D +  +  K++ V    E E  K K +  + +  L   +++ RL  Q+ ++  +L+  Q+
Sbjct:   774 DEVFVEFCKEIGVRNIREFEEEKVKRQNEIAKKRLEFETQKTRLAIQLDYEKNQLKEDQE 833

Query:   480 SLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADI 539
              + M W+   K+D N   E +++   ++  ++ E   T  QL++L  ++  L  KS+ + 
Sbjct:   834 KVVM-WEQTVKKDEN-EIEKLKKEEQRNMKIIDE---TMAQLQDLKNQH--LTKKSEVND 886

Query:   540 KVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILL 599
             K    E++ +R    G  +EL+Q+  E +  E  L+Q+R         R  LL  C++  
Sbjct:   887 KN--HEMEEIRKKLGGANKELTQLQKEVTAIETKLEQKRSD-------RHNLLQACKMQD 937

Query:   600 NRFQACNANL--YAEEEDNVILEXXXXXXXXXXXXXXXXQISLLITEAQLLAEDSKAAAS 657
              +    +  +   ++EE N   E                + +L+  +   L+ED K + S
Sbjct:   938 IKLPLRSGTMDDISQEEGNSQAEESLSSSQKTSSTVLAKE-ALIEIDYNSLSEDLKDSLS 996

Query:   658 ADVEKAHDNDVCTRTDNELREVIADILVDNAKLRKQVNSV 697
              +  KA  N +  R  NE + ++  I   N K  +++ SV
Sbjct:   997 DEEIKAEMNTLQQRL-NEQQSILQRISAPNMKAMEKLESV 1035

GO:0051276 "chromosome organization" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0007062 "sister chromatid cohesion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|D4ABD7 Trip11 "Protein Trip11" [Rattus norvegicus (taxid:10116)]

 Score = 141 (54.7 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
 Identities = 85/393 (21%), Positives = 166/393 (42%)

Query:   333 SVRSDASSIRGSEISNFGIPNSSADGSPGLHRCAEVSSS--REILGNSD-LQ-FSGDAEL 388
             S++   ++IR  + +N  + +S A  S G  +  E + S  +++    + LQ    + +L
Sbjct:  1352 SLQEKDATIRTLQENNHRLSDSMAASSEGERKEHEQTDSEVKQLKEKQEVLQNLLKEKDL 1411

Query:   389 VIPL--DQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVK-DLEVELE 445
             +I    DQ H  +          V+    +   +T L + + + +  ++K+K + E  +E
Sbjct:  1412 LIKAKSDQLHSSNENFANK----VSENELLRQAVTNLKERILILEMDISKLKGENEKVIE 1467

Query:   446 TTKQKSKE--TLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEES 503
              +K K  E   LQ+  +     L + +++   +R+K+L  E  LK K+ G     +   +
Sbjct:  1468 ASKGKETEYQALQETNMKFSMMLREKEFECHSMREKALAFEQLLKEKEQGKAGELNQLLN 1527

Query:   504 TVKDKNVLQELDATKEQLENLSKRYEELEAKSKA-DIKVLVKEVKFLRSSQIGLKQELSQ 562
              VK    +QE   T +Q     +    L  K K  +   L  EV+ LR  +  L QEL +
Sbjct:  1528 AVKS---MQEKTVTFQQ----ERDQVMLALKQKQMETSTLQNEVQRLRDKEARLNQELQR 1580

Query:   563 MLN-----EKSKTEELL---QQERQTHNHMKTVREKLLHECRILLNRFQACNANLYA-EE 613
             + +     E S T E L    +E +    +  + EKL+     + N     +  + + +E
Sbjct:  1581 LRDHLLESEDSHTREALAAEDREAKLRKKVSVLEEKLVSSSNAMENASHQASVQVESLQE 1640

Query:   614 EDNVIL-EXXXXXXXXXXXXXXXXQISLLITEAQLLAE----DSKAAASADVEKAHDNDV 668
             + N++  +                Q ++ +T  Q++ E    + KA  SA++EK   N +
Sbjct:  1641 QLNMVSKQRDETALQLSVSQEQVKQYAMSLTNLQMVLEHFQQEEKAMYSAELEK--QNQL 1698

Query:   669 CTRTDNELREVIADILVDNAKLRKQVNSVLRRA 701
              T    +   +   +L    +L  + N+ L  A
Sbjct:  1699 LTEWKKKAESLEGKVLSLQERL-DEANAALDSA 1730

GO:0000042 "protein targeting to Golgi" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00180449 hypothetical protein (713 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	724
cd06879	138	cd06879, PX_UP1_plant, The phosphoinositide bindin	9e-65
cd06093	106	cd06093, PX_domain, The Phox Homology domain, a ph	6e-20
pfam00787	109	pfam00787, PX, PX domain	3e-18
smart00312	105	smart00312, PX, PhoX homologous domain, present in	3e-15
cd06885	104	cd06885, PX_SNX17_31, The phosphoinositide binding	6e-08
cd06897	108	cd06897, PX_SNARE, The phosphoinositide binding Ph	1e-07
cd06866	105	cd06866, PX_SNX8_Mvp1p_like, The phosphoinositide	2e-07
cd06859	114	cd06859, PX_SNX1_2_like, The phosphoinositide bind	3e-07
cd07280	120	cd07280, PX_YPT35, The phosphoinositide binding Ph	4e-07
cd06876	133	cd06876, PX_MDM1p, The phosphoinositide binding Ph	1e-06
cd06878	127	cd06878, PX_SNX25, The phosphoinositide binding Ph	3e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-06
cd06869	119	cd06869, PX_UP2_fungi, The phosphoinositide bindin	6e-06
cd06865	120	cd06865, PX_SNX_like, The phosphoinositide binding	2e-05
cd06873	120	cd06873, PX_SNX13, The phosphoinositide binding Ph	2e-05
cd07277	118	cd07277, PX_RUN, The phosphoinositide binding Phox	3e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	7e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-05
pfam07888	546	pfam07888, CALCOCO1, Calcium binding and coiled-co	8e-05
pfam04156	186	pfam04156, IncA, IncA protein	9e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-04
cd07281	124	cd07281, PX_SNX1, The phosphoinositide binding Pho	2e-04
cd07295	116	cd07295, PX_Grd19, The phosphoinositide binding Ph	2e-04
cd06874	127	cd06874, PX_KIF16B_SNX23, The phosphoinositide bin	2e-04
cd06862	125	cd06862, PX_SNX9_18_like, The phosphoinositide bin	3e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-04
cd06861	112	cd06861, PX_Vps5p, The phosphoinositide binding Ph	6e-04
cd06877	119	cd06877, PX_SNX14, The phosphoinositide binding Ph	6e-04
pfam05483	787	pfam05483, SCP-1, Synaptonemal complex protein 1 (	6e-04
PLN02939	977	PLN02939, PLN02939, transferase, transferring glyc	6e-04
cd06893	132	cd06893, PX_SNX19, The phosphoinositide binding Ph	7e-04
cd07276	110	cd07276, PX_SNX16, The phosphoinositide binding Ph	8e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	9e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.002
COG5391	524	COG5391, COG5391, Phox homology (PX) domain protei	0.002
cd06875	116	cd06875, PX_IRAS, The phosphoinositide binding Pho	0.002
cd06863	118	cd06863, PX_Atg24p, The phosphoinositide binding P	0.003
cd06886	106	cd06886, PX_SNX27, The phosphoinositide binding Ph	0.003
cd06871	120	cd06871, PX_MONaKA, The phosphoinositide binding P	0.003
cd06868	120	cd06868, PX_HS1BP3, The phosphoinositide binding P	0.003
cd06880	110	cd06880, PX_SNX22, The phosphoinositide binding Ph	0.003
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.004

>gnl|CDD|132789 cd06879, PX_UP1_plant, The phosphoinositide binding Phox Homology domain of uncharacterized plant proteins

 Score =  210 bits (536), Expect = 9e-65
 Identities = 96/138 (69%), Positives = 102/138 (73%), Gaps = 24/138 (17%)

Query: 48  YCVTIPSWVVLPKSRDSDPVV------------------------FYRVQVGLQSPEGIT 83
           YCV IPSWVVLPKS++SD                           FYRVQVG+QSPEGIT
Sbjct: 1   YCVFIPSWVVLPKSKESDGKAINPKVGNMSVVYSEYQPLNNAVDKFYRVQVGVQSPEGIT 60

Query: 84  TTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLL 143
           T RGVLRRFN+FLKL TDLKK FPKK +P APPKGLLRMK+RALLEERR SLEEWM KLL
Sbjct: 61  TMRGVLRRFNDFLKLHTDLKKLFPKKKLPAAPPKGLLRMKNRALLEERRHSLEEWMGKLL 120

Query: 144 SDIDLSRSVSVASFLELE 161
           SDIDLSRSV VASFLELE
Sbjct: 121 SDIDLSRSVPVASFLELE 138

The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. Length = 138

>gnl|CDD|132768 cd06093, PX_domain, The Phox Homology domain, a phosphoinositide binding module

 Score = 85.1 bits (211), Expect = 6e-20
 Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 6/111 (5%)

Query: 50  VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKK 109
           V+IP +  +         V Y ++V  Q  E  T    V RR+++F +L   LKK FP  
Sbjct: 2   VSIPDYEKVKDG--GKKYVVYIIEVTTQGGEEWT----VYRRYSDFEELHEKLKKKFPGV 55

Query: 110 NIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160
            +PP PPK L        +EERR  LE+++  LL+  +L  S  +  FLEL
Sbjct: 56  ILPPLPPKKLFGNLDPEFIEERRKQLEQYLQSLLNHPELRNSEELKEFLEL 106

The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting. Length = 106

>gnl|CDD|216119 pfam00787, PX, PX domain

 Score = 80.5 bits (199), Expect = 3e-18
 Identities = 35/100 (35%), Positives = 48/100 (48%), Gaps = 5/100 (5%)

Query: 60  KSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGL 119
           KS        Y V       +       V RR+++F +L   L + FP + IPP PPK L
Sbjct: 13  KSGKKHTYYLYEVTT-----KTNLKEWSVKRRYSDFEELHKQLLRKFPGRIIPPLPPKKL 67

Query: 120 LRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLE 159
               S   +E+RR  LEE++ +LL   +LS S  V  FLE
Sbjct: 68  FGRFSEEFIEKRRKGLEEYLQRLLQHPELSNSEVVLEFLE 107

PX domains bind to phosphoinositides. Length = 109

>gnl|CDD|214610 smart00312, PX, PhoX homologous domain, present in p47phox and p40phox

 Score = 71.6 bits (176), Expect = 3e-15
 Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 7/95 (7%)

Query: 69  FYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPK---GLLRMKSR 125
           +Y +++  ++         V RR+++FL+L + LKK FP+  +PP P K   G L   S 
Sbjct: 14  YYVIEIETKTGL---EEWTVSRRYSDFLELHSKLKKHFPRSILPPLPGKKLFGRLNNFSE 70

Query: 126 ALLEERRCSLEEWMTKLLSDIDLSR-SVSVASFLE 159
             +E+RR  LE+++  LL+  +L   S  V  FLE
Sbjct: 71  EFIEKRRRGLEKYLQSLLNHPELINHSEVVLEFLE 105

Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform. Length = 105

>gnl|CDD|132795 cd06885, PX_SNX17_31, The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 91  RFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSR 150
           R++    L   LKK F  + +PP PPK LL + + A LEERR  LE+++  ++ D  ++ 
Sbjct: 34  RYSQLHGLNEQLKKEFGNRKLPPFPPKKLLPL-TPAQLEERRLQLEKYLQAVVQDPRIAN 92

Query: 151 SVSVASFL 158
           S    SFL
Sbjct: 93  SDIFNSFL 100

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Members of this subfamily include sorting nexin 17 (SNX17), SNX31, and similar proteins. They contain an N-terminal PX domain followed by a truncated FERM (4.1, ezrin, radixin, and moesin) domain and a unique C-terminal region. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX17 is known to regulate the trafficking and processing of a number of proteins. It binds some members of the low-density lipoprotein receptor (LDLR) family such as LDLR, VLDLR, ApoER2, and others, regulating their endocytosis. It also binds P-selectin and may regulate its lysosomal degradation. SNX17 is highly expressed in neurons. It binds amyloid precursor protein (APP) and may be involved in its intracellular trafficking and processing to amyloid beta peptide, which plays a central role in the pathogenesis of Alzheimer's disease. The biological function of SNX31 is unknown. Length = 104

>gnl|CDD|132807 cd06897, PX_SNARE, The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 40/116 (34%), Positives = 53/116 (45%), Gaps = 16/116 (13%)

Query: 50  VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKK 109
           ++IP+  V PK     P   Y +QV L  P    T   V RR++ F+ L   L+      
Sbjct: 3   ISIPTTSVSPK-----PYTVYNIQVRL--PLRSYT---VSRRYSEFVALHKQLESEVG-I 51

Query: 110 NIP-PAPPK--GLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVS--VASFLEL 160
             P P PPK   L    +  L+EERR  LE ++  LL+D D     S  V  FL L
Sbjct: 52  EPPYPLPPKSWFLSTSSNPKLVEERRVGLEAFLRALLNDEDSRWRNSPAVKEFLNL 107

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of fungal proteins similar to Saccharomyces cerevisiae Vam7p. They contain an N-terminal PX domain and a C-terminal SNARE domain. The SNARE (Soluble NSF attachment protein receptor) family of proteins are integral membrane proteins that serve as key factors for vesicular trafficking. Vam7p is anchored at the vacuolar membrane through the specific interaction of its PX domain with phosphatidylinositol-3-phosphate (PI3P) present in bilayers. It plays an essential role in vacuole fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. Length = 108

>gnl|CDD|132776 cd06866, PX_SNX8_Mvp1p_like, The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 23/74 (31%), Positives = 35/74 (47%)

Query: 85  TRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLS 144
              V RR+++F+ L   L K +P + +P  PPK +     R  LE RR  L  ++  +  
Sbjct: 29  KSTVYRRYSDFVWLHEYLLKRYPYRMVPALPPKRIGGSADREFLEARRRGLSRFLNLVAR 88

Query: 145 DIDLSRSVSVASFL 158
              LS    V +FL
Sbjct: 89  HPVLSEDELVRTFL 102

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. Length = 105

>gnl|CDD|132769 cd06859, PX_SNX1_2_like, The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2

 Score = 49.1 bits (118), Expect = 3e-07
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 13/110 (11%)

Query: 64  SDPV---------VFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPA 114
           +DPV         V YRV      P+   +   VLRR+++FL L+  L + +P + +PP 
Sbjct: 6   TDPVKVGDGMSAYVVYRVTTKTNLPDFKKSEFSVLRRYSDFLWLYERLVEKYPGRIVPPP 65

Query: 115 PPK---GLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161
           P K   G  ++K    +E+RR +LE ++ ++ +   L +      FLE +
Sbjct: 66  PEKQAVGRFKVKFE-FIEKRRAALERFLRRIAAHPVLRKDPDFRLFLESD 114

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX1, SNX2, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization of the cargo-recognition subcomplex. Length = 114

>gnl|CDD|132813 cd07280, PX_YPT35, The phosphoinositide binding Phox Homology domain of the fungal protein YPT35

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 9/80 (11%)

Query: 88  VLRRFNNFLKLFTDLKKAFPKKN---IPPAPPK-----GLLRMKSRALLEERRCSLEEWM 139
             +R++ F++L   L   FP+     IP  PPK       + + ++A LE+RR  L+ ++
Sbjct: 41  AYKRYSEFVQLREALLDEFPRHKRNEIPQLPPKVPWYDSRVNL-NKAWLEKRRRGLQYFL 99

Query: 140 TKLLSDIDLSRSVSVASFLE 159
             +L +     S  V  FL 
Sbjct: 100 NCVLLNPVFGGSPVVKEFLL 119

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of YPT35 proteins from the fungal subkingdom Dikarya. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of YPT35 binds to phosphatidylinositol 3-phosphate (PI3P). It also serves as a protein interaction domain, binding to members of the Yip1p protein family, which localize to the ER and Golgi. YPT35 is mainly associated with endosomes and together with Yip1p proteins, may be involved in a specific function in the endocytic pathway. Length = 120

>gnl|CDD|132786 cd06876, PX_MDM1p, The phosphoinositide binding Phox Homology domain of yeast MDM1p

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 2/94 (2%)

Query: 67  VVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGL--LRMKS 124
            V Y ++V   + +  ++   V RR++ FL+L   LKK +P       P K    L+   
Sbjct: 38  FVVYLIEVQRLNNDDQSSGWVVARRYSEFLELHKYLKKRYPGVLKLDFPQKRKISLKYSK 97

Query: 125 RALLEERRCSLEEWMTKLLSDIDLSRSVSVASFL 158
             L+EERR +LE+++ +LL   ++        FL
Sbjct: 98  TLLVEERRKALEKYLQELLKIPEVCEDEEFRKFL 131

The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Yeast MDM1p is a filament-like protein localized in punctate structures distributed throughout the cytoplasm. It plays an important role in nuclear and mitochondrial transmission to daughter buds. Members of this subfamily show similar domain architectures as some sorting nexins (SNXs). Some members are similar to SNX19 in that they contain an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. Others are similar to SNX13 and SNX14, which also harbor these three domains as well as a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Length = 133

>gnl|CDD|132788 cd06878, PX_SNX25, The phosphoinositide binding Phox Homology domain of Sorting Nexin 25

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 2/94 (2%)

Query: 67  VVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFP--KKNIPPAPPKGLLRMKS 124
           +V +  +VGL   E I++   V R+ + F  L   LK+     KK   P+  K   +   
Sbjct: 31  IVVHVSEVGLNEDESISSGWVVTRKLSEFHDLHRKLKECSSWLKKVELPSLSKKWFKSID 90

Query: 125 RALLEERRCSLEEWMTKLLSDIDLSRSVSVASFL 158
           +  L++ +  L++++  +L D  L +S ++ SFL
Sbjct: 91  KKFLDKSKNQLQKYLQFILEDETLCQSEALYSFL 124

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. The function of SNX25 is not yet known. It has been found in exosomes from human malignant pleural effusions. SNX25 shows the same domain architecture as SNX13 and SNX14, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. Length = 127

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 50.1 bits (120), Expect = 4e-06
 Identities = 51/274 (18%), Positives = 108/274 (39%), Gaps = 11/274 (4%)

Query: 385 DAELVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVEL 444
           + EL + L +  +L + L  +E  L   + ++E+L   L +     + L +++++L  EL
Sbjct: 224 ELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREEL 283

Query: 445 ETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEEST 504
           E       +     +  E E L      + E  ++      +L+ + +         +  
Sbjct: 284 E-----ELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEE 338

Query: 505 V-KDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQM 563
           + + + +L+EL+    +LE   +  EELE K  A ++ L +  + LR     L+ EL+++
Sbjct: 339 LEERETLLEELEQLLAELE---EAKEELEEKLSALLEELEELFEALREELAELEAELAEI 395

Query: 564 LNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANLYAEEEDNVILES-- 621
            NE  + +  ++   +    +    E L  E + L    +     L    E+   LE   
Sbjct: 396 RNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQL 455

Query: 622 SSAADALALLTSSDDQISLLITEAQLLAEDSKAA 655
               D L  L     ++   +   +      +A 
Sbjct: 456 EELRDRLKELERELAELQEELQRLEKELSSLEAR 489

Length = 1163

>gnl|CDD|132779 cd06869, PX_UP2_fungi, The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 6/71 (8%)

Query: 88  VLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDID 147
           V RR+++F KL  DLKK FP K +P  P K  L        E+ R SL +++  LL D +
Sbjct: 52  VARRYSDFKKLHHDLKKEFPGKKLPKLPHKDKLPR------EKLRLSLRQYLRSLLKDPE 105

Query: 148 LSRSVSVASFL 158
           ++ S  +  FL
Sbjct: 106 VAHSSILQEFL 116

The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. Length = 119

>gnl|CDD|132775 cd06865, PX_SNX_like, The phosphoinositide binding Phox Homology domain of SNX-like proteins

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 5/117 (4%)

Query: 50  VTIPSWVVLPKSR--DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFP 107
           V+ P     P        P + Y+V      P        V RRF + + L   L +A+ 
Sbjct: 4   VSDPKKEQEPSRVPLGGPPYISYKVTTRTNIPSYTHGEFTVRRRFRDVVALADRLAEAYR 63

Query: 108 KKNIPPAPPKGLLR---MKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161
              +PP P K ++    M+S   +E+RR +LE+++ +L +   +  S  +  FL L+
Sbjct: 64  GAFVPPRPDKSVVESQVMQSAEFIEQRRVALEKYLNRLAAHPVIGLSDELRVFLTLQ 120

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily is composed of uncharacterized proteins, predominantly from plants, with similarity to sorting nexins. A few members show a similar domain architecture as a subfamily of sorting nexins, containing a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. The PX-BAR structural unit is known to determine specific membrane localization. Length = 120

>gnl|CDD|132783 cd06873, PX_SNX13, The phosphoinositide binding Phox Homology domain of Sorting Nexin 13

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 4/94 (4%)

Query: 70  YRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLE 129
           Y + V    P G   +  V RR+++F  L   LK+ FP  +    P K       RA LE
Sbjct: 25  YAISVTRIYPNGQEESWHVYRRYSDFHDLHMRLKEKFPNLSKLSFPGKKTFNNLDRAFLE 84

Query: 130 ERRCSLEEWMTKLLSDIDLSRSVS----VASFLE 159
           +RR  L +++  LL+   L  +      V  FLE
Sbjct: 85  KRRKMLNQYLQSLLNPEVLDANPGLQEIVLDFLE 118

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX13, also called RGS-PX1, contains an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. It specifically binds to the stimulatory subunit of the heterotrimeric G protein G(alpha)s, serving as its GTPase activating protein, through the RGS domain. It preferentially binds phosphatidylinositol-3-phosphate (PI3P) through the PX domain and is localized in early endosomes. SNX13 is involved in endosomal sorting of EGFR into multivesicular bodies (MVB) for delivery to the lysosome. Length = 120

>gnl|CDD|132810 cd07277, PX_RUN, The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 7/94 (7%)

Query: 50  VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKK 109
           V IPS  V  + + SD    Y+V + ++  E       V RR++ F +L   LKK FP  
Sbjct: 3   VWIPS--VFLRGKGSDAHHVYQVYIRIRDDEW-----NVYRRYSEFYELHKKLKKKFPVV 55

Query: 110 NIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLL 143
                PPK  +  K    +EERR  L+ ++ +++
Sbjct: 56  RSFDFPPKKAIGNKDAKFVEERRKRLQVYLRRVV 89

The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized proteins containing an N-terminal RUN domain and a C-terminal PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. The RUN domain is found in GTPases in the Rap and Rab families and may play a role in Ras-like signaling pathways. Length = 118

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 57/272 (20%), Positives = 114/272 (41%), Gaps = 21/272 (7%)

Query: 393 DQRHKLSRVLLTMERRLVTAKTDMEDL---ITRLNQEMTVKDYLMTKVKDLEVELETTKQ 449
           ++  +L   L   E  L     ++++L   +  L  E++  +    ++++L+ EL     
Sbjct: 239 EELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELE---EEIEELQKELYALAN 295

Query: 450 KSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN 509
           +    L+Q     RERL  ++  +EEL  +  E+E KL          E + E   K + 
Sbjct: 296 E-ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELA------EELAELEEKLEE 348

Query: 510 VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSK 569
           + +EL++ + +LE L    EELE++ +     L ++++ LRS    L+ +++ + NE  +
Sbjct: 349 LKEELESLEAELEELEAELEELESRLEE----LEEQLETLRSKVAQLELQIASLNNEIER 404

Query: 570 TEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANLYAEEEDNVILESSSAADALA 629
            E   + ER      +  +E      ++     +   A L  EE +  + E     + L 
Sbjct: 405 LEA--RLERLEDRRERLQQEIEELLKKLEEAELKELQAEL--EELEEELEELQEELERLE 460

Query: 630 LLTSSDDQISLLITEAQLLAEDSKAAASADVE 661
                  +      +A   AE   A   A ++
Sbjct: 461 EALEELREELEEAEQALDAAERELAQLQARLD 492

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 46.6 bits (111), Expect = 5e-05
 Identities = 38/207 (18%), Positives = 88/207 (42%), Gaps = 16/207 (7%)

Query: 393 DQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSK 452
           ++   L R L  +E +L   ++ +++L   L +     + L  +++ LE ELE  + + +
Sbjct: 309 ERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELE 368

Query: 453 E------TLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKS------KQDGNPHAESM 500
           E       L++ + + R ++ Q++  +  L  +   +E +L+       +          
Sbjct: 369 ELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLK 428

Query: 501 EESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQEL 560
           +    + K +  EL+  +E+LE L +  E LE   +     L +E++    +    ++EL
Sbjct: 429 KLEEAELKELQAELEELEEELEELQEELERLEEALEE----LREELEEAEQALDAAEREL 484

Query: 561 SQMLNEKSKTEELLQQERQTHNHMKTV 587
           +Q+       E L +        +K +
Sbjct: 485 AQLQARLDSLERLQENLEGFSEGVKAL 511

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 45.9 bits (109), Expect = 7e-05
 Identities = 38/205 (18%), Positives = 89/205 (43%), Gaps = 10/205 (4%)

Query: 397 KLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQ 456
           +L  +   +   L   +   E+L  +L +   + + L    + L+++    + +  E   
Sbjct: 509 ELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRL 568

Query: 457 QAILSERERLTQMQWDMEEL---RQKSLEMEWKLKSKQDGNPHAESMEESTVKD------ 507
           Q +    E L  ++   EEL   R++  E++ KLK  ++     E + +S          
Sbjct: 569 QELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENEL 628

Query: 508 KNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEK 567
           +   +EL++  E+L NL    EEL   +  +++  V+E++     ++   +   Q+  + 
Sbjct: 629 EEAEEELESELEKL-NLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKL 687

Query: 568 SKTEELLQQERQTHNHMKTVREKLL 592
            + E+L ++  Q    ++ + +KL 
Sbjct: 688 EELEQLEEELEQLREELEELLKKLG 712

Length = 908

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.8 bits (109), Expect = 8e-05
 Identities = 40/183 (21%), Positives = 76/183 (41%), Gaps = 25/183 (13%)

Query: 402 LLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILS 461
           L  +  RL   K ++  L + L +     D L  ++ D   ++    +K  E L+Q    
Sbjct: 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGE-IEKEIEQLEQEEEK 734

Query: 462 ERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQL 521
            +ERL +++ D+  L Q+   ++ +LK                     +   ++  +E L
Sbjct: 735 LKERLEELEEDLSSLEQEIENVKSELK--------------------ELEARIEELEEDL 774

Query: 522 ENLSKRYEELEAK-SKADIKVLVKEVKFL---RSSQIGLKQELSQMLNEKSKTEELLQQE 577
             L +   +LEA+ S + I  +  E+  L    S      +E+ Q LN  +  +E L++E
Sbjct: 775 HKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKE 834

Query: 578 RQT 580
            Q 
Sbjct: 835 IQE 837

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like

 Score = 45.4 bits (107), Expect = 8e-05
 Identities = 44/191 (23%), Positives = 84/191 (43%), Gaps = 6/191 (3%)

Query: 401 VLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAIL 460
            LL           ++E  I  L Q+    D ++   +D+E ELE  K + K+ L++  +
Sbjct: 210 ALLAQRAENQQRILELEQDIQTLTQKKQENDRVLEGTQDIEAELERMKGELKQRLKKMTI 269

Query: 461 SERERLTQ---MQWDMEELRQKSLEMEWKLKSKQD--GNPHAESMEESTVKDKNVLQELD 515
             R+  T+   +Q + E+L +    ++ +L+S Q   G    E     +++D  +  EL 
Sbjct: 270 QRRDEETERIDLQLENEQLHEDLRTLQERLESSQQKAGLLGEELASLGSLRDHTI-AELH 328

Query: 516 ATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQ 575
            ++ +   +S +  +L    K       +E + LR S    K  + ++  E  K EE LQ
Sbjct: 329 QSRLESAQMSLQLSQLNLALKEGQSQWAQERETLRQSAEADKDRIQKLSAELLKLEEWLQ 388

Query: 576 QERQTHNHMKT 586
           +ER     ++ 
Sbjct: 389 EERSQREKLEV 399

Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region. Length = 546

>gnl|CDD|217933 pfam04156, IncA, IncA protein

 Score = 43.6 bits (103), Expect = 9e-05
 Identities = 26/129 (20%), Positives = 67/129 (51%), Gaps = 13/129 (10%)

Query: 448 KQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKD 507
           + +  E LQ  +   +++L+++Q ++E+L ++  E+E +L+  ++       + +S    
Sbjct: 70  RPQKLEELQGELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRELLKS---- 125

Query: 508 KNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEK 567
             + + L++ +E ++ L+K   EL    + +++ L +E++ L+       Q L + + E 
Sbjct: 126 --LEERLESLEESIKELAKELRELRQDLREEVEELREELERLQE----NLQRLQEAIQEL 179

Query: 568 SKTEELLQQ 576
              + LL+Q
Sbjct: 180 ---QSLLEQ 185

Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is non-fusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA, is functionally associated with the homotypic fusion of inclusions. This family probably includes members of the wider Inc family rather than just IncA. Length = 186

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.5 bits (108), Expect = 1e-04
 Identities = 51/245 (20%), Positives = 107/245 (43%), Gaps = 22/245 (8%)

Query: 371 SREILGNSDLQFSGDAELVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVK 430
             E+          + EL    ++   L  +L  + R+L   +  +E+L   L       
Sbjct: 673 EEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEEL 732

Query: 431 DYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSK 490
           + L +++++LE ELE   ++  E LQ+ +    E L  ++  + +L+++  E+E K ++ 
Sbjct: 733 EQLQSRLEELEEELEE-LEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQAL 791

Query: 491 QDGNPHAESMEESTVKD---------KNVLQELDATKEQLENLSKRYEELEAKSKADIKV 541
           Q+        E    +          +++ Q  +  ++++E L +  EELE K    +  
Sbjct: 792 QE-ELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEK----LDE 846

Query: 542 LVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNR 601
           L +E++ L      LK+EL ++  EK + E+ L++  +        +E+L  E R L + 
Sbjct: 847 LEEELEELEKELEELKEELEELEAEKEELEDELKELEEE-------KEELEEELRELESE 899

Query: 602 FQACN 606
                
Sbjct: 900 LAELK 904

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 37/202 (18%), Positives = 100/202 (49%), Gaps = 16/202 (7%)

Query: 393 DQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSK 452
           + R K+ R +L ++     A  ++ ++I  + + +   +  + + +++E  ++  +++ +
Sbjct: 145 ESREKVVRQILGLDD-YENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELE 203

Query: 453 ETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQ 512
           E L++ I      L +++ ++E+L ++  E+E             E +EE   + +++  
Sbjct: 204 EVLRE-INEISSELPELREELEKLEKEVKELE----------ELKEEIEELEKELESLEG 252

Query: 513 ELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQ---IGLKQELSQMLNEKSK 569
                +E++  L +R EEL+ + + +++  VKE+K L+      I L +   + L+E  +
Sbjct: 253 SKRKLEEKIRELEERIEELKKEIE-ELEEKVKELKELKEKAEEYIKLSEFYEEYLDELRE 311

Query: 570 TEELLQQERQTHNHMKTVREKL 591
            E+ L +  +  N ++   ++L
Sbjct: 312 IEKRLSRLEEEINGIEERIKEL 333

Length = 880

>gnl|CDD|132814 cd07281, PX_SNX1, The phosphoinositide binding Phox Homology domain of Sorting Nexin 1

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 12/106 (11%)

Query: 68  VFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKN--IPPAPPKGLLRM--- 122
           V Y+V          +    V RRF++FL L+  L +   +    +PP P K L+ M   
Sbjct: 19  VVYKVTTQTSLLMFRSKHFTVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKV 78

Query: 123 -------KSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161
                   S   LE RR +LE ++ +++S   L +   V  FLE E
Sbjct: 79  KVGKEDSSSAEFLERRRAALERYLQRIVSHPSLLQDPDVREFLEKE 124

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX1 is both membrane associated and a cytosolic protein that exists as a tetramer in protein complexes. It can associate reversibly with membranes of the endosomal compartment, thereby coating these vesicles. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures efficient cargo sorting by facilitating proper membrane localization of the cargo-recognition subcomplex. SNX1 contains a Bin/Amphiphysin/Rvs (BAR) domain C-terminal to the PX domain. The PX domain of SNX1 specifically binds phosphatidylinositol-3-phosphate (PI3P) and PI(3,5)P2, while the BAR domain detects membrane curvature. Both domains help determine the specific membrane-targeting of SNX1, which is localized to a microdomain in early endosomes where it regulates cation-independent mannose-6-phosphate receptor retrieval to the trans Golgi network. Length = 124

>gnl|CDD|132828 cd07295, PX_Grd19, The phosphoinositide binding Phox Homology domain of fungal Grd19

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 18/52 (34%), Positives = 28/52 (53%)

Query: 88  VLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWM 139
           V RR+++F      L++  P+  IPP P K      S  ++EERR  LE ++
Sbjct: 40  VRRRYSDFEYFRDILERESPRVMIPPLPGKIFTNRFSDEVIEERRQGLETFL 91

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer. Length = 116

>gnl|CDD|132784 cd06874, PX_KIF16B_SNX23, The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 7/95 (7%)

Query: 50  VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKK 109
           +TIP +V+  + +D      +  +V +   +   T   V RR++ F +L   +K  +P+ 
Sbjct: 3   ITIPRYVLRGQGKDE----HFEFEVKITVLDETWT---VFRRYSRFRELHKTMKLKYPEV 55

Query: 110 NIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLS 144
                PPK L   KS  + +ERR  LE ++    S
Sbjct: 56  AALEFPPKKLFGNKSERVAKERRRQLETYLRNFFS 90

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. KIF16B, also called sorting nexin 23 (SNX23), is a family-3 kinesin which harbors an N-terminal kinesin motor domain containing ATP and microtubule binding sites, a ForkHead Associated (FHA) domain, and a C-terminal PX domain. The PX domain of KIF16B binds to phosphatidylinositol-3-phosphate (PI3P) in early endosomes and plays a role in the transport of early endosomes to the plus end of microtubules. By regulating early endosome plus end motility, KIF16B modulates the balance between recycling and degradation of receptors. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Length = 127

>gnl|CDD|132772 cd06862, PX_SNX9_18_like, The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 5/89 (5%)

Query: 75  GLQS-----PEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLE 129
           GL+S          T   V RR+ +F  L+  L + +    IPP P K +        +E
Sbjct: 16  GLKSFIAYQITPTHTNVTVSRRYKHFDWLYERLVEKYSCIAIPPLPEKQVTGRFEEDFIE 75

Query: 130 ERRCSLEEWMTKLLSDIDLSRSVSVASFL 158
           +RR  LE WM +L     LS+S     FL
Sbjct: 76  KRRERLELWMNRLARHPVLSQSEVFRHFL 104

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX9, SNX18, and similar proteins. They contain an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. Length = 125

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.1 bits (102), Expect = 6e-04
 Identities = 51/267 (19%), Positives = 97/267 (36%), Gaps = 22/267 (8%)

Query: 407 RRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERL 466
             L     ++E+ I  L +           + +L  ELE   ++  E L++ +     ++
Sbjct: 680 EELEEKIEELEEKIAELEKA----------LAELRKELEE-LEEELEQLRKELEELSRQI 728

Query: 467 TQMQWDMEELRQKS--LEMEWKLKSKQDGNPHAESMEESTVKDKN--VLQELDATKEQLE 522
           + ++ D+  L  +   LE      SK+     AE  E     ++    L E +A  E+LE
Sbjct: 729 SALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE 788

Query: 523 NLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHN 582
              ++ +E     +  +  L  E+  L      L++ L  +    + TE  L+   +   
Sbjct: 789 AQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE 848

Query: 583 HMKTVREKLLHE---CRILLNRFQA---CNANLYAEEEDNVILESSSAADALALLTSSDD 636
            +    E L  E      L+   ++      N  A  E+ + L  S   +    L   + 
Sbjct: 849 ELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES 908

Query: 637 QISLLITEAQLLAEDSKAAASADVEKA 663
           + S L  E + L E   A     +E  
Sbjct: 909 KRSELRRELEELRE-KLAQLELRLEGL 934

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|132771 cd06861, PX_Vps5p, The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 27/94 (28%), Positives = 44/94 (46%)

Query: 68  VFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRAL 127
             Y V+    SP    ++  VLRR+ +F  L+  L+   P   +PP P K  +       
Sbjct: 19  TVYTVRTRTTSPNFEVSSFSVLRRYRDFRWLYRQLQNNHPGVIVPPPPEKQSVGRFDDNF 78

Query: 128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161
           +E+RR +LE+ + K+ +   L +      FLE E
Sbjct: 79  VEQRRAALEKMLRKIANHPVLQKDPDFRLFLESE 112

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. The PX domain of Vps5p binds phosphatidylinositol-3-phosphate (PI3P). Similar to SNX1, Vps5p contains a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. Length = 112

>gnl|CDD|132787 cd06877, PX_SNX14, The phosphoinositide binding Phox Homology domain of Sorting Nexin 14

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 24/71 (33%), Positives = 35/71 (49%)

Query: 88  VLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDID 147
           VLRR+N F  L + L +   +    P P + +   KS   LE +R   EE++ KLL   +
Sbjct: 46  VLRRYNEFYVLESKLTEFHGEFPDAPLPSRRIFGPKSYEFLESKREIFEEFLQKLLQKPE 105

Query: 148 LSRSVSVASFL 158
           L  S  +  FL
Sbjct: 106 LRGSELLYDFL 116

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX14 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. It is expressed in the embryonic nervous system of mice, and is co-expressed in the motoneurons and the anterior pituary with Islet-1. SNX14 shows a similar domain architecture as SNX13, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. Length = 119

>gnl|CDD|114219 pfam05483, SCP-1, Synaptonemal complex protein 1 (SCP-1)

 Score = 42.8 bits (100), Expect = 6e-04
 Identities = 72/309 (23%), Positives = 135/309 (43%), Gaps = 30/309 (9%)

Query: 385 DAELVIPLDQRHKLSRVLLTMERRLV----TAKTDMEDLITRLNQEMTVKDYLMTKVKDL 440
           D +L+    Q  K++  L   E+ L+      + ++ DL  +L    T +++ + +V+DL
Sbjct: 417 DEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDL 476

Query: 441 EVELETTKQKSKETLQQA--ILSERERLTQMQWDME-ELRQKSLEMEWKLKSKQDGNPHA 497
           + ELE  K K+ E       +L E + LTQ   DM  EL++   ++    K ++      
Sbjct: 477 KTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQI 536

Query: 498 ESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLK 557
           E++EE   K+ N+  EL++ +E+        +    KS+ + + +  EV         L+
Sbjct: 537 ENLEE---KEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILE 593

Query: 558 QE---LSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANLYAEEE 614
            +   L + +  K+K  E L QE +      +   K L+   I +N+ +           
Sbjct: 594 NKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLE----------- 642

Query: 615 DNVILESSSAADALALLTSS-DDQISL-LITEAQLLAEDSKAAASADVEKAHDNDVCTRT 672
               LE +SA      +  +   +I    I+E +LL E  KA A AD       ++  R 
Sbjct: 643 ----LELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRC 698

Query: 673 DNELREVIA 681
            +++ E++A
Sbjct: 699 QHKIAEMVA 707

Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase. Length = 787

>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups

 Score = 43.0 bits (101), Expect = 6e-04
 Identities = 53/244 (21%), Positives = 89/244 (36%), Gaps = 42/244 (17%)

Query: 328 KLSADSVRSDASSIRGSEISNFGIPNSSADGSPGLHRCAEVSSSREILGNSDLQFSGDAE 387
           K  A   RS  S ++ +   N  + N+S      L + +  S       N       +A 
Sbjct: 52  KNIAPKQRSSNSKLQSNTDENGQLENTSLRTVMELPQKSTSSDDDH---NRASMQRDEAI 108

Query: 388 LVIPLDQR------HKLSRVLLTMERRLVTAKTDMEDLITRLNQE-----------MTVK 430
             I  +Q+       +LS   L     LV    + E  I  LNQ            +T K
Sbjct: 109 AAIDNEQQTNSKDGEQLSDFQL---EDLVGMIQNAEKNILLLNQARLQALEDLEKILTEK 165

Query: 431 DYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSK 490
           + L  K+  LE+ L  T  + K   Q+ I  E          +EE  +K         + 
Sbjct: 166 EALQGKINILEMRLSETDARIKLAAQEKIHVEI---------LEEQLEKLRNELLIRGAT 216

Query: 491 QDGNPHAESMEESTVKDKNVL--QELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKF 548
           +    H+ S E   +K++N+L   ++   K +L  +        A+++  +  L KE   
Sbjct: 217 EGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEV--------AETEERVFKLEKERSL 268

Query: 549 LRSS 552
           L +S
Sbjct: 269 LDAS 272

Length = 977

>gnl|CDD|132803 cd06893, PX_SNX19, The phosphoinositide binding Phox Homology domain of Sorting Nexin 19

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 32/122 (26%), Positives = 44/122 (36%), Gaps = 25/122 (20%)

Query: 60  KSRDSDPVVFYRVQ-----------VGLQSPEGITTTRGVLRRFNNFLKLFT------DL 102
           K   + P   Y VQ               + E    T  V RRF  FL L T        
Sbjct: 14  KGTGTHPYTLYTVQYETILDVQSEQNPNAASEQPLATHTVNRRFREFLTLQTRLEENPKF 73

Query: 103 KKAF----PKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFL 158
           +K      P K +   P   + + K    +E RR  LE ++ +L S  ++S S  V  FL
Sbjct: 74  RKIMNVKGPPKRLFDLPFGNMDKDK----IEARRGLLETFLRQLCSIPEISNSEEVQEFL 129

Query: 159 EL 160
             
Sbjct: 130 AY 131

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX19 contains an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. These domains are also found in SNX13 and SNX14, which also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNX19 interacts with IA-2, a major autoantigen found in type-1 diabetes. It inhibits the conversion of phosphatidylinositol-4,5-bisphosphate [PI(4,5)P2] to PI(3,4,5)P3, which leads in the decrease of protein phosphorylation in the Akt signaling pathway, resulting in apoptosis. SNX19 may also be implicated in coronary heart disease and thyroid oncocytic tumors. Length = 132

>gnl|CDD|132809 cd07276, PX_SNX16, The phosphoinositide binding Phox Homology domain of Sorting Nexin 16

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 88  VLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRAL-LEERRCSLEEWMTKLLSDI 146
           V RR+ +F++L   LK+ FP   +   PPK   +       LEER+  L+ ++  +++  
Sbjct: 37  VFRRYTDFVRLNDKLKQMFPGFRL-SLPPKRWFKDNFDPDFLEERQLGLQAFVNNIMAHK 95

Query: 147 DLSRSVSVASFLELE 161
           D+++   V  F  L+
Sbjct: 96  DIAKCKLVREFFCLD 110

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX16 contains a central PX domain followed by a coiled-coil region. SNX16 is localized in early and recycling endosomes through the binding of its PX domain to phosphatidylinositol-3-phosphate (PI3P). It plays a role in epidermal growth factor (EGF) signaling by regulating EGF receptor membrane trafficking. Length = 110

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.4 bits (100), Expect = 9e-04
 Identities = 23/159 (14%), Positives = 61/159 (38%), Gaps = 11/159 (6%)

Query: 385 DAELVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVEL 444
           +  L     +  KL   +  +ER +   +   + L     +     + L  ++++++ E 
Sbjct: 321 EERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEF 380

Query: 445 ETTKQKSK------ETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAE 498
             T+ + K      E L++ I   +  L ++Q +++ L ++  ++   +   +      E
Sbjct: 381 AETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAK--INE 438

Query: 499 SMEESTVKDKNVL---QELDATKEQLENLSKRYEELEAK 534
             EE   K   +     +L+     L    +   +L+ +
Sbjct: 439 LEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEE 477

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 41/202 (20%), Positives = 86/202 (42%), Gaps = 22/202 (10%)

Query: 436 KVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNP 495
           K+++LE  +E  K++ +E     +  + + L +++   EE  + S   E  L   ++   
Sbjct: 260 KIRELEERIEELKKEIEE-----LEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEK 314

Query: 496 HAESMEESTVKDKNVLQELDATKEQLENLSKRYEELE---------AKSKADIKVLVKEV 546
               +EE     +  ++EL+  +E+LE L K+ +ELE          +   + K   +E+
Sbjct: 315 RLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEEL 374

Query: 547 KFLRSSQIGL-KQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQA- 604
           + L+    GL  ++L + L E  K +E +++E           +K + E +  +   +  
Sbjct: 375 ERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKA 434

Query: 605 ------CNANLYAEEEDNVILE 620
                 C   L  E    ++ E
Sbjct: 435 KGKCPVCGRELTEEHRKELLEE 456

Length = 880

>gnl|CDD|227680 COG5391, COG5391, Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 8/108 (7%)

Query: 88  VLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMK-----SRALLEERRCSLEEWMTKL 142
           V RR+++F  L + L K  P   IPP P K           S   +EERR SL+ ++ ++
Sbjct: 175 VRRRYSDFESLHSILIKLLPLCAIPPLPSKKSNSEYYGDRFSDEFIEERRQSLQNFLRRV 234

Query: 143 LSDIDLSRSVSVASFLELEAAARSSFQDVNQNASEANPSSNSTISSLQ 190
            +   LS   +  S+        S  +      S   P S    S+ Q
Sbjct: 235 STHPLLSNYKNSKSWESHSTLLSSFIE---NRKSVPTPLSLDLTSTTQ 279

Length = 524

>gnl|CDD|132785 cd06875, PX_IRAS, The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 8/103 (7%)

Query: 59  PKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFP-KKNIPPAPPK 117
           P +   +    Y ++V       +  T  V  R+++F +L   L       K++   PPK
Sbjct: 9   PSAETVEGYTVYIIEV---KVGSVEWT--VKHRYSDFAELHDKLVAEHKVDKDL--LPPK 61

Query: 118 GLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160
            L+  KS + +E+RR  LE ++  LLS    +    +A FL+ 
Sbjct: 62  KLIGNKSPSFVEKRRKELEIYLQTLLSFFQKTMPRELAHFLDF 104

The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Imidazoline Receptor Antisera-Selected (IRAS), also called nischarin, contains an N-terminal PX domain, leucine rich repeats, and a predicted coiled coil domain. The PX domain of IRAS binds to phosphatidylinositol-3-phosphate in membranes. Together with the coiled coil domain, it is essential for the localization of IRAS to endosomes. IRAS has been shown to interact with integrin and inhibit cell migration. Its interaction with alpha5 integrin causes a redistribution of the receptor from the cell surface to endosomal structures, suggesting that IRAS may function as a sorting nexin (SNX) which regulates the endosomal trafficking of integrin. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Length = 116

>gnl|CDD|132773 cd06863, PX_Atg24p, The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 9/107 (8%)

Query: 60  KSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGL 119
               SD  + Y +      P        V RR+++F+ L   L   FP   +PP P K  
Sbjct: 12  LDGSSDTYISYLITTKTNLPSFSRKEFKVRRRYSDFVFLHECLSNDFPACVVPPLPDK-- 69

Query: 120 LRMK-------SRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLE 159
            R++       S   +  R  SL+ ++ ++     LS+S  +  FLE
Sbjct: 70  HRLEYITGDRFSPEFITRRAQSLQRFLRRISLHPVLSQSKILHQFLE 116

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The yeast Atg24p is a sorting nexin (SNX) which is involved in membrane fusion events at the vacuolar surface during pexophagy. This is facilitated via binding of Atg24p to phosphatidylinositol 3-phosphate (PI3P) through its PX domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Length = 118

>gnl|CDD|132796 cd06886, PX_SNX27, The phosphoinositide binding Phox Homology domain of Sorting Nexin 27

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 90  RRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLS 149
           RR+  F  L  +LKK FP    P  P K    + S   L+ RR  LE+++ K+ S   + 
Sbjct: 36  RRYREFANLHQNLKKEFPDFQFPKLPGKWPFSL-SEQQLDARRRGLEQYLEKVCSIRVIG 94

Query: 150 RSVSVASFL 158
            S  +  FL
Sbjct: 95  ESDIMQDFL 103

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX27 contains an N-terminal PDZ domain followed by a PX domain and a Ras-Associated (RA) domain. It binds G protein-gated potassium (Kir3) channels, which play a role in neuronal excitability control, through its PDZ domain. SNX27 downregulates Kir3 channels by promoting their movement in the endosome, reducing surface expression and increasing degradation. SNX27 also associates with 5-hydroxytryptamine type 4 receptor (5-HT4R), cytohesin associated scaffolding protein (CASP), and diacylglycerol kinase zeta, and may play a role in their intracellular trafficking and endocytic recycling. The SNX27 PX domain preferentially binds to phosphatidylinositol-3-phosphate (PI3P) and is important for targeting to the early endosome. Length = 106

>gnl|CDD|132781 cd06871, PX_MONaKA, The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 11/112 (9%)

Query: 51  TIPSWVVLPKSRDSDPVVFY--RVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK 108
           T+P   V+  S++      Y  RVQ G  SPE       V+RR+N+F  L   L+ +   
Sbjct: 5   TVPLTCVIEASQNIQSHTEYIIRVQRGP-SPENSWQ---VIRRYNDFDLLNASLQIS--- 57

Query: 109 KNIP-PAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLE 159
             I  P PPK L+    R  + ER+  L+ ++  +L +  L+  + V  FL+
Sbjct: 58  -GISLPLPPKKLIGNMDREFIAERQQGLQNYLNVILMNPILASCLPVKKFLD 108

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. MONaKA (Modulator of Na,K-ATPase) binds the plasma membrane ion transporter, Na,K-ATPase, and modulates its enzymatic and ion pump activities. It modulates brain Na,K-ATPase and may be involved in regulating electrical excitability and synaptic transmission. MONaKA contains an N-terminal PX domain and a C-terminal catalytic kinase domain. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes. Length = 120

>gnl|CDD|132778 cd06868, PX_HS1BP3, The phosphoinositide binding Phox Homology domain of HS1BP3

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 88  VLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDID 147
           V ++++ F +L+  L + +P   +PP P K L    S + + ERR +  ++M  +  D  
Sbjct: 49  VSKKYSEFEELYKKLSEKYPGTILPPLPRKALFV--SESDIRERRAAFNDFMRFISKDEK 106

Query: 148 LSRSVSVASFL 158
           L+    +  FL
Sbjct: 107 LANCPELLEFL 117

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Hematopoietic lineage cell-specific protein-1 (HS1) binding protein 3 (HS1BP3) associates with HS1 proteins through their SH3 domains, suggesting a role in mediating signaling. It has been reported that HS1BP3 might affect the IL-2 signaling pathway in hematopoietic lineage cells. Mutations in HS1BP3 may also be associated with familial Parkinson disease and essential tremor. HS1BP3 contains a PX domain, a leucine zipper, motifs similar to immunoreceptor tyrosine-based inhibitory motif and proline-rich regions. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes. Length = 120

>gnl|CDD|132790 cd06880, PX_SNX22, The phosphoinositide binding Phox Homology domain of Sorting Nexin 22

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 16/116 (13%)

Query: 48  YCVTIPSW--VVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKA 105
             V+IPS+   V    +   P   + ++V L +  G   T  V +R++ F  L   LKK+
Sbjct: 1   IEVSIPSYRLEVDESEK---PYTVFTIEV-LVN--GRRHT--VEKRYSEFHALHKKLKKS 52

Query: 106 FPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161
                 P  PPK +     + +LE+RR  LE ++  LL   +L +   +  FL + 
Sbjct: 53  IKT---PDFPPKRVRNWNPK-VLEQRRQGLEAYLQGLLKINELPK--QLLDFLGVR 102

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known. Length = 110

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 40.1 bits (94), Expect = 0.004
 Identities = 47/291 (16%), Positives = 114/291 (39%), Gaps = 32/291 (10%)

Query: 402 LLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILS 461
           L  +E +L   ++++E+L    N+   + +  + ++++   ELE   +K+ E L+Q   +
Sbjct: 331 LEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEA 390

Query: 462 ERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQL 521
            +E   +    + EL     E++             E +EE   + + + +EL+  +E++
Sbjct: 391 IQELKEE----LAELSAALEEIQ-------------EELEELEKELEELERELEELEEEI 433

Query: 522 ENLSKRYEELEAKSKADIKVLVKE--------VKFLRSSQIGLKQELSQMLNEKSKTEEL 573
           + L ++  +LE+K    I  L            +     +  L +     L E  +    
Sbjct: 434 KKLEEQINQLESKELM-IAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSR 492

Query: 574 LQQERQTHNHMKTVREKLLHECRILLNRFQACNANLYAEEEDNVILESSSAADALALLTS 633
            ++E +    ++ + ++L      L+   +     L    ++ +  +     + L  L  
Sbjct: 493 EKEEAELREEIEELEKELRELEEELIELLE-----LEEALKEELEEKLEKLENLLEELEE 547

Query: 634 SDDQISLLITEAQL-LAEDSKAAASADVEKAHDNDVCTRTDNELREVIADI 683
             +++ L   + +L   ED        +E+            ELRE + ++
Sbjct: 548 LKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKEL 598

Length = 908

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	724
cd06879	138	PX_UP1_plant The phosphoinositide binding Phox Hom	99.96
cd06877	119	PX_SNX14 The phosphoinositide binding Phox Homolog	99.92
cd06861	112	PX_Vps5p The phosphoinositide binding Phox Homolog	99.92
cd07280	120	PX_YPT35 The phosphoinositide binding Phox Homolog	99.91
cd06865	120	PX_SNX_like The phosphoinositide binding Phox Homo	99.91
cd07281	124	PX_SNX1 The phosphoinositide binding Phox Homology	99.9
cd06868	120	PX_HS1BP3 The phosphoinositide binding Phox Homolo	99.89
cd06862	125	PX_SNX9_18_like The phosphoinositide binding Phox	99.89
cd07276	110	PX_SNX16 The phosphoinositide binding Phox Homolog	99.89
cd07286	127	PX_SNX18 The phosphoinositide binding Phox Homolog	99.89
cd06898	113	PX_SNX10 The phosphoinositide binding Phox Homolog	99.89
cd06864	129	PX_SNX4 The phosphoinositide binding Phox Homology	99.89
cd07282	124	PX_SNX2 The phosphoinositide binding Phox Homology	99.89
cd06897	108	PX_SNARE The phosphoinositide binding Phox Homolog	99.89
cd06863	118	PX_Atg24p The phosphoinositide binding Phox Homolo	99.89
cd06886	106	PX_SNX27 The phosphoinositide binding Phox Homolog	99.89
cd07279	112	PX_SNX20_21_like The phosphoinositide binding Phox	99.89
cd06860	116	PX_SNX7_30_like The phosphoinositide binding Phox	99.89
cd06870	109	PX_CISK The phosphoinositide binding Phox Homology	99.89
cd06894	123	PX_SNX3_like The phosphoinositide binding Phox Hom	99.89
cd07295	116	PX_Grd19 The phosphoinositide binding Phox Homolog	99.89
cd06867	112	PX_SNX41_42 The phosphoinositide binding Phox Homo	99.88
cd06859	114	PX_SNX1_2_like The phosphoinositide binding Phox H	99.88
cd07301	112	PX_SNX21 The phosphoinositide binding Phox Homolog	99.88
cd06873	120	PX_SNX13 The phosphoinositide binding Phox Homolog	99.88
cd07300	114	PX_SNX20 The phosphoinositide binding Phox Homolog	99.88
cd07293	123	PX_SNX3 The phosphoinositide binding Phox Homology	99.88
cd07283	116	PX_SNX30 The phosphoinositide binding Phox Homolog	99.88
cd06881	117	PX_SNX15_like The phosphoinositide binding Phox Ho	99.88
cd07294	132	PX_SNX12 The phosphoinositide binding Phox Homolog	99.88
cd06876	133	PX_MDM1p The phosphoinositide binding Phox Homolog	99.88
cd07284	116	PX_SNX7 The phosphoinositide binding Phox Homology	99.87
cd06893	132	PX_SNX19 The phosphoinositide binding Phox Homolog	99.87
cd06878	127	PX_SNX25 The phosphoinositide binding Phox Homolog	99.87
cd07285	126	PX_SNX9 The phosphoinositide binding Phox Homology	99.87
cd06872	107	PX_SNX19_like_plant The phosphoinositide binding P	99.87
cd06875	116	PX_IRAS The phosphoinositide binding Phox Homology	99.87
cd06880	110	PX_SNX22 The phosphoinositide binding Phox Homolog	99.87
cd06866	105	PX_SNX8_Mvp1p_like The phosphoinositide binding Ph	99.86
cd06885	104	PX_SNX17_31 The phosphoinositide binding Phox Homo	99.86
cd07288	118	PX_SNX15 The phosphoinositide binding Phox Homolog	99.85
cd07287	118	PX_RPK118_like The phosphoinositide binding Phox H	99.85
cd07277	118	PX_RUN The phosphoinositide binding Phox Homology	99.85
cd06891	140	PX_Vps17p The phosphoinositide binding Phox Homolo	99.82
cd06871	120	PX_MONaKA The phosphoinositide binding Phox Homolo	99.82
cd06093	106	PX_domain The Phox Homology domain, a phosphoinosi	99.8
cd06882	123	PX_p40phox The phosphoinositide binding Phox Homol	99.8
cd06869	119	PX_UP2_fungi The phosphoinositide binding Phox Hom	99.8
cd06883	109	PX_PI3K_C2 The phosphoinositide binding Phox Homol	99.8
smart00312	105	PX PhoX homologous domain, present in p47phox and	99.8
cd06874	127	PX_KIF16B_SNX23 The phosphoinositide binding Phox	99.78
KOG2527	144	consensus Sorting nexin SNX11 [Intracellular traff	99.75
cd07291	141	PX_SNX5 The phosphoinositide binding Phox Homology	99.75
cd06892	141	PX_SNX5_like The phosphoinositide binding Phox Hom	99.74
PF00787	113	PX: PX domain; InterPro: IPR001683 The PX (phox) d	99.73
cd07292	141	PX_SNX6 The phosphoinositide binding Phox Homology	99.72
cd06884	111	PX_PI3K_C2_68D The phosphoinositide binding Phox H	99.71
KOG2273	503	consensus Membrane coat complex Retromer, subunit	99.71
KOG2528	490	consensus Sorting nexin SNX9/SH3PX1 and related pr	99.67
cd06895	140	PX_PLD The phosphoinositide binding Phox Homology	99.67
cd06890	112	PX_Bem1p The phosphoinositide binding Phox Homolog	99.66
cd07289	109	PX_PI3K_C2_alpha The phosphoinositide binding Phox	99.64
cd06887	118	PX_p47phox The phosphoinositide binding Phox Homol	99.63
cd06888	119	PX_FISH The phosphoinositide binding Phox Homology	99.59
cd07290	109	PX_PI3K_C2_beta The phosphoinositide binding Phox	99.58
cd07296	135	PX_PLD1 The phosphoinositide binding Phox Homology	99.48
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.29
COG5391	524	Phox homology (PX) domain protein [Intracellular t	99.26
cd06889	121	PX_NoxO1 The phosphoinositide binding Phox Homolog	99.16
cd06896	101	PX_PI3K_C2_gamma The phosphoinositide binding Phox	99.07
KOG3784	407	consensus Sorting nexin protein SNX27 [General fun	98.96
cd07297	130	PX_PLD2 The phosphoinositide binding Phox Homology	98.69
KOG2101	362	consensus Intermediate filament-like protein, sort	98.32
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	97.79
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.68
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	97.61
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	97.55
cd07298	115	PX_RICS The phosphoinositide binding Phox Homology	97.47
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	97.31
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	97.27
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	97.25
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.02
PRK02224	880	chromosome segregation protein; Provisional	96.88
PRK02224	880	chromosome segregation protein; Provisional	96.83
cd07278	114	PX_RICS_like The phosphoinositide binding Phox Hom	96.74
cd07299	113	PX_TCGAP The phosphoinositide binding Phox Homolog	96.64
KOG4773	386	consensus NADPH oxidase [Energy production and con	96.53
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	96.53
KOG1660	399	consensus Sorting nexin SNX6/TFAF2, contains PX do	96.41
PRK11637	428	AmiB activator; Provisional	96.41
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	96.37
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	96.17
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	96.14
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	96.14
PRK11637	428	AmiB activator; Provisional	95.97
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	95.89
KOG0933	1174	consensus Structural maintenance of chromosome pro	95.87
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.82
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	95.79
PRK10361	475	DNA recombination protein RmuC; Provisional	95.74
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	95.71
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	95.59
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	95.41
PRK04778	569	septation ring formation regulator EzrA; Provision	95.36
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	95.22
PRK09039	343	hypothetical protein; Validated	95.19
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	95.18
PRK04778	569	septation ring formation regulator EzrA; Provision	94.98
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	94.95
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	94.91
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	94.89
PRK04863	1486	mukB cell division protein MukB; Provisional	94.84
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	94.64
PF00038	312	Filament: Intermediate filament protein; InterPro:	94.61
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	94.49
PHA02562	562	46 endonuclease subunit; Provisional	94.38
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	94.36
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	94.34
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	94.09
KOG0996	1293	consensus Structural maintenance of chromosome pro	94.03
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	94.02
PRK03918	880	chromosome segregation protein; Provisional	93.92
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	93.82
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	93.77
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	93.46
KOG0971	1243	consensus Microtubule-associated protein dynactin	93.43
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	93.38
KOG4673	961	consensus Transcription factor TMF, TATA element m	93.36
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	93.23
PF08580	683	KAR9: Yeast cortical protein KAR9; InterPro: IPR01	93.22
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	93.22
PHA02562	562	46 endonuclease subunit; Provisional	93.12
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	93.08
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	92.99
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	92.94
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	92.8
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	92.69
KOG4572	1424	consensus Predicted DNA-binding transcription fact	92.69
KOG0964	1200	consensus Structural maintenance of chromosome pro	92.36
PRK09039	343	hypothetical protein; Validated	92.21
PF00038	312	Filament: Intermediate filament protein; InterPro:	92.16
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	92.15
PLN02939	977	transferase, transferring glycosyl groups	92.01
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	92.01
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	91.98
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	91.93
KOG0933	1174	consensus Structural maintenance of chromosome pro	91.8
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	91.79
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	91.27
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.26
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	91.22
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	91.11
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	90.67
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	90.29
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	89.84
COG4372	499	Uncharacterized protein conserved in bacteria with	89.8
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	89.66
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	89.63
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	89.51
PF13514	1111	AAA_27: AAA domain	89.49
KOG0963	629	consensus Transcription factor/CCAAT displacement	89.49
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	89.47
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	89.41
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	89.4
PF00435	105	Spectrin: Spectrin repeat; InterPro: IPR002017 Spe	89.04
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	88.61
PRK01156	895	chromosome segregation protein; Provisional	88.53
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	88.41
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	88.33
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	88.23
KOG0996	1293	consensus Structural maintenance of chromosome pro	88.06
PRK04863	1486	mukB cell division protein MukB; Provisional	88.03
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	88.01
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	87.89
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	87.87
PF15233	134	SYCE1: Synaptonemal complex central element protei	87.85
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	87.78
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	87.76
KOG0249	916	consensus LAR-interacting protein and related prot	87.66
KOG0971	1243	consensus Microtubule-associated protein dynactin	87.47
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	87.44
COG4942	420	Membrane-bound metallopeptidase [Cell division and	87.32
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	86.92
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	86.83
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	86.74
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	86.61
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	86.03
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	85.93
KOG0979	1072	consensus Structural maintenance of chromosome pro	85.75
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	85.74
PRK10884	206	SH3 domain-containing protein; Provisional	85.73
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	85.15
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	85.13
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	84.78
KOG0963	629	consensus Transcription factor/CCAAT displacement	84.61
COG4942	420	Membrane-bound metallopeptidase [Cell division and	84.59
PF10186	302	Atg14: UV radiation resistance protein and autopha	84.33
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	84.08
PRK01156	895	chromosome segregation protein; Provisional	84.03
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	83.91
PRK10929	1109	putative mechanosensitive channel protein; Provisi	83.15
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	82.95
cd09238	339	V_Alix_like_1 Protein-interacting V-domain of an u	82.35
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	82.2
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	81.85
PRK10698	222	phage shock protein PspA; Provisional	81.78
PF03148	384	Tektin: Tektin family; InterPro: IPR000435 Tektin	81.71
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	81.64
PRK11519	719	tyrosine kinase; Provisional	81.58
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	81.45
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	81.35
PRK10246	1047	exonuclease subunit SbcC; Provisional	81.3
smart00806	426	AIP3 Actin interacting protein 3. Aip3p/Bud6p is a	81.3
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	81.04
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	80.72
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	80.55
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	80.48
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	80.43
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	80.28
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	80.08

>cd06879 PX_UP1_plant The phosphoinositide binding Phox Homology domain of uncharacterized plant proteins

Probab=99.96  E-value=1.1e-28  Score=233.23  Aligned_cols=114  Identities=84%  Similarity=1.289  Sum_probs=109.1

Q ss_pred             EEEEecceEEccCCCCCCCeE------------------------EEEEEEeeecCCCCCcceEEEccchhHHHHHHHHH
Q 004913           48 YCVTIPSWVVLPKSRDSDPVV------------------------FYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLK  103 (724)
Q Consensus        48 y~VsIPS~~~v~~s~~sk~yV------------------------vY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lk  103 (724)
                      |||.||||..+++++++++.+                        +|.|+|++++|++....|.|.||||||++||..|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~VqV~v~~~~~~~~~w~V~RRYSDF~~L~~~L~   80 (138)
T cd06879           1 YCVFIPSWVVLPKSKESDGKAINPKVGNMSVVYSEYQPLNNAVDKFYRVQVGVQSPEGITTMRGVLRRFNDFLKLHTDLK   80 (138)
T ss_pred             CcEeccceeEeccccCCCCccccccccccccceeeeecccCCceEEEEEEEeecCCCCcceeeeeecCchHHHHHHHHHH
Confidence            799999999999998888766                        99999999999998999999999999999999999


Q ss_pred             HHCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcc
Q 004913          104 KAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE  161 (724)
Q Consensus       104 k~fP~~~LPpLPPKk~fg~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElE  161 (724)
                      +.||...+||+|||+++++++++|||+||.+||.||++|++||.+++++.|++||+++
T Consensus        81 ~~~p~~~lPplPpK~~l~~~~~~fiEeRR~gLE~fLq~Ll~~p~l~~s~~v~~FLele  138 (138)
T cd06879          81 KLFPKKKLPAAPPKGLLRMKNRALLEERRHSLEEWMGKLLSDIDLSRSVPVASFLELE  138 (138)
T ss_pred             HHCCCCcCCCCCCcccccCCCHHHHHHHHHHHHHHHHHHHcCccccCCHHHHHHhCCC
Confidence            9999988999999999999999999999999999999999999999999999999986

The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.

>cd06877 PX_SNX14 The phosphoinositide binding Phox Homology domain of Sorting Nexin 14

Probab=99.92  E-value=1.4e-24  Score=199.80  Aligned_cols=113  Identities=25%  Similarity=0.355  Sum_probs=100.5

Q ss_pred             EEEEecceEEccCCCCCCCeEEEEEEEeeec---CCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCC
Q 004913           48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQS---PEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKS  124 (724)
Q Consensus        48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqs---pegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s  124 (724)
                      |.|+||+.....++.+++.|++|.|.|....   +......|.|.||||||.+||..|++.||...+|+||+|+++++++
T Consensus         3 ~~i~I~~~~~~~~~~~~~~~~~Y~I~V~~~~~~~~~~~~~~w~V~RRYsdF~~L~~~L~~~~~~~~~~~lP~K~~~~~~~   82 (119)
T cd06877           3 WRVSIPYVEMRRDPSNGERIYVFCIEVERNDRRAKGHEPQHWSVLRRYNEFYVLESKLTEFHGEFPDAPLPSRRIFGPKS   82 (119)
T ss_pred             ceEEeeeEEEeecCCCCcEEEEEEEEEEEccccCCCCCcCceEEEechHHHHHHHHHHHHHCCCCCCCCCcCCcccCCCC
Confidence            5899999988765457789999999996421   1223469999999999999999999999988889999999999899


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCc
Q 004913          125 RALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL  160 (724)
Q Consensus       125 ~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLEl  160 (724)
                      ++||++||.+||.||+.|+.||.++.|..|+.||+.
T Consensus        83 ~~~ie~Rr~~Le~fL~~ll~~~~l~~s~~~~~FL~~  118 (119)
T cd06877          83 YEFLESKREIFEEFLQKLLQKPELRGSELLYDFLSP  118 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccccCHHHHHhCCC
Confidence            999999999999999999999999999999999975

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX14 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. It is expressed in the embryonic nervous system of mice, and is co-expressed in the motoneurons and the anterior pituary with Islet-1. SNX14 shows a similar domain architecture as SNX13, containing an N

>cd06861 PX_Vps5p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p

Probab=99.92  E-value=1.7e-24  Score=196.15  Aligned_cols=111  Identities=25%  Similarity=0.367  Sum_probs=98.4

Q ss_pred             EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHH
Q 004913           49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALL  128 (724)
Q Consensus        49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eFL  128 (724)
                      .|.|..+...++  +.++||+|.|++.+..+.+....|.|.||||||.|||..|+..||+..+||+|+|+++++++++||
T Consensus         2 ~i~V~dp~~~~~--~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~iP~lP~K~~~~~~~~~fi   79 (112)
T cd06861           2 EITVGDPHKVGD--LTSAHTVYTVRTRTTSPNFEVSSFSVLRRYRDFRWLYRQLQNNHPGVIVPPPPEKQSVGRFDDNFV   79 (112)
T ss_pred             EEEEcCcceecC--CccCeEEEEEEEEeCCCCCCCCccEEEeehHHHHHHHHHHHHHCCCCccCCCCCcccccCCCHHHH
Confidence            455555555433  467899999999877666667899999999999999999999999999999999999998899999


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCHHHhhccCcc
Q 004913          129 EERRCSLEEWMTKLLSDIDLSRSVSVASFLELE  161 (724)
Q Consensus       129 EERR~gLEkYLqrLLshP~Ls~S~~L~sFLElE  161 (724)
                      ++||.+||.||++|+.||.|++|+.|+.||+.+
T Consensus        80 e~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~~  112 (112)
T cd06861          80 EQRRAALEKMLRKIANHPVLQKDPDFRLFLESE  112 (112)
T ss_pred             HHHHHHHHHHHHHHHCCcccccCcHHHHhcCCC
Confidence            999999999999999999999999999999864

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. The PX domain of Vps5p binds phosphatidylinositol-3-phosphate (PI3P

>cd07280 PX_YPT35 The phosphoinositide binding Phox Homology domain of the fungal protein YPT35

Probab=99.91  E-value=4.2e-24  Score=195.48  Aligned_cols=109  Identities=23%  Similarity=0.390  Sum_probs=98.2

Q ss_pred             EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCC---CCCCCCCCcccC----
Q 004913           49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKK---NIPPAPPKGLLR----  121 (724)
Q Consensus        49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~---~LPpLPPKk~fg----  121 (724)
                      .|.||+|..+....++++||+|.|+|.+..+  ....|.|.||||||.+||..|+..||..   .+||||+|++++    
T Consensus         4 ~i~i~~~~~~~~~~~~~~yv~Y~I~v~~~~~--~~~~~~V~RRYseF~~L~~~L~~~~p~~~~~~~P~lP~K~~~~~~~~   81 (120)
T cd07280           4 DVNVGDYTIVGGDTGGGAYVVWKITIETKDL--IGSSIVAYKRYSEFVQLREALLDEFPRHKRNEIPQLPPKVPWYDSRV   81 (120)
T ss_pred             EEEcCCCeEECCCCCCCCEEEEEEEEEeCCC--CCCcEEEEeeHHHHHHHHHHHHHHCcccccCcCCCCCCCcccccccc
Confidence            6899999987655457899999999965543  2369999999999999999999999986   799999999887    


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccC
Q 004913          122 MKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLE  159 (724)
Q Consensus       122 ~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLE  159 (724)
                      +++++|||+||.+||.||+.|+.||.|++|+.|++||+
T Consensus        82 ~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~  119 (120)
T cd07280          82 NLNKAWLEKRRRGLQYFLNCVLLNPVFGGSPVVKEFLL  119 (120)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHhCCHhhccChHHHHhhC
Confidence            78899999999999999999999999999999999997

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of YPT35 proteins from the fungal subkingdom Dikarya. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of YPT35 binds to phosphatidylinositol 3-phosphate (PI3P). It also serves as a protein interaction domain, binding to members of the Yip1p protein family, which localize to the ER and Golgi. YPT35 is mainly associated with endosomes and together with Yip1p proteins, may be involved in a specific function in the endocytic pathway.

>cd06865 PX_SNX_like The phosphoinositide binding Phox Homology domain of SNX-like proteins

Probab=99.91  E-value=8.1e-24  Score=194.28  Aligned_cols=99  Identities=27%  Similarity=0.471  Sum_probs=90.2

Q ss_pred             CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC---CCCHHHHHHHHHHHHHHH
Q 004913           63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR---MKSRALLEERRCSLEEWM  139 (724)
Q Consensus        63 ~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg---~~s~eFLEERR~gLEkYL  139 (724)
                      ++++||+|.|+|.+..+++....|+|.||||||.+||..|+..||+..+||+|+|.++.   +++++|||+||.+||.||
T Consensus        19 ~~~~ytvY~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~fie~Rr~~Le~fL   98 (120)
T cd06865          19 GGPPYISYKVTTRTNIPSYTHGEFTVRRRFRDVVALADRLAEAYRGAFVPPRPDKSVVESQVMQSAEFIEQRRVALEKYL   98 (120)
T ss_pred             CCCCEEEEEEEEecCCCCCCCCceEEEeehHHHHHHHHHHHHHCCCCeeCCCcCCccccccccCCHHHHHHHHHHHHHHH
Confidence            56899999999976666666789999999999999999999999999999999998764   258999999999999999


Q ss_pred             HHHhcccCCCCCHHHhhccCcc
Q 004913          140 TKLLSDIDLSRSVSVASFLELE  161 (724)
Q Consensus       140 qrLLshP~Ls~S~~L~sFLElE  161 (724)
                      ++|+.||.|++|+.|+.||+.+
T Consensus        99 ~~i~~~p~l~~s~~~~~FL~~~  120 (120)
T cd06865          99 NRLAAHPVIGLSDELRVFLTLQ  120 (120)
T ss_pred             HHHHcCceeecCcHHHHhccCC
Confidence            9999999999999999999864

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily is composed of uncharacterized proteins, predominantly from plants, with similarity to sorting nexins. A few members show a similar domain architectu

>cd07281 PX_SNX1 The phosphoinositide binding Phox Homology domain of Sorting Nexin 1

Probab=99.90  E-value=2.1e-23  Score=192.33  Aligned_cols=111  Identities=30%  Similarity=0.430  Sum_probs=96.0

Q ss_pred             EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCC--CCCCCCCCCCcccCC----
Q 004913           49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFP--KKNIPPAPPKGLLRM----  122 (724)
Q Consensus        49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP--~~~LPpLPPKk~fg~----  122 (724)
                      .|.|..+....+  +.++||+|.|.+.+..+......|.|.||||||++||..|...||  ++.+||+|+|+++++    
T Consensus         2 ~i~V~~p~~~~~--~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iPp~P~K~~~~~~~~~   79 (124)
T cd07281           2 KVSITDPEKIGD--GMNAYVVYKVTTQTSLLMFRSKHFTVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVK   79 (124)
T ss_pred             EEEEcCCeEeeC--CcCCeEEEEEEEecCCCccCCCceEEEeehHHHHHHHHHHHHhCCCCCcEeCCCCCccccccchhh
Confidence            467777776543  568999999999766666666899999999999999999999997  356899999987653    


Q ss_pred             ------CCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcc
Q 004913          123 ------KSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE  161 (724)
Q Consensus       123 ------~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElE  161 (724)
                            ++++|||+||.+||.||++|++||.|++|+.|+.||+.+
T Consensus        80 ~~~~~~~~~~fie~Rr~~Le~FL~~l~~~p~l~~s~~~~~FL~~~  124 (124)
T cd07281          80 VGKEDSSSAEFLERRRAALERYLQRIVSHPSLLQDPDVREFLEKE  124 (124)
T ss_pred             ccccccccHHHHHHHHHHHHHHHHHHhcCcccccChHHHHHhCCC
Confidence                  478999999999999999999999999999999999864

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX1 is both membrane associated and a cytosolic protein that exists as a tetramer in protein complexes. It can associate reversibly with membranes of the endosomal compartment, thereby coating these vesicles. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval

>cd06868 PX_HS1BP3 The phosphoinositide binding Phox Homology domain of HS1BP3

Probab=99.89  E-value=3.9e-23  Score=190.76  Aligned_cols=110  Identities=23%  Similarity=0.417  Sum_probs=95.6

Q ss_pred             EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCC--------cceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc
Q 004913           49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGIT--------TTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL  120 (724)
Q Consensus        49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~--------~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~f  120 (724)
                      .|.||++...... +.++||+|.|.|.+..+.+..        ..|.|.||||||.+||..|++.||...+||||+|+++
T Consensus         3 ~v~vp~~~~~~~~-~~~~y~~Y~I~~~t~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~   81 (120)
T cd06868           3 DLTVPEYQEIRGK-TSSGHVLYQIVVVTRLAAFKSAKHKEEDVVQFMVSKKYSEFEELYKKLSEKYPGTILPPLPRKALF   81 (120)
T ss_pred             ceecCCceeecCC-CCCCeEEEEEEEEeCchhccCcccccCCceeEEEeCCcHHHHHHHHHHHHHCCCCCCCCCCCCccc
Confidence            5889999876543 567899999998654332221        3799999999999999999999999889999999987


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcc
Q 004913          121 RMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE  161 (724)
Q Consensus       121 g~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElE  161 (724)
                      +  +++||++||.+||.||++|++||.|++|+.|..||.+.
T Consensus        82 ~--~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~~  120 (120)
T cd06868          82 V--SESDIRERRAAFNDFMRFISKDEKLANCPELLEFLGVK  120 (120)
T ss_pred             C--CHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHHHhcCC
Confidence            6  78999999999999999999999999999999999863

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Hematopoietic lineage cell-specific protein-1 (HS1) binding protein 3 (HS1BP3) associates with HS1 proteins through their SH3 domains, suggesting a role in mediating signaling. It has been reported that HS1BP3 might affect the IL-2 signaling pathway in hematopoietic lineage cells. Mutations in HS1BP3 may also be associated with familial Parkinson disease and essential tremor. HS1BP3 contains a PX domain, a leucine zipper, motifs similar to immunoreceptor tyrosine-based inhibitory motif and proline-rich regions. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.

>cd06862 PX_SNX9_18_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18

Probab=99.89  E-value=3.7e-23  Score=192.26  Aligned_cols=107  Identities=27%  Similarity=0.374  Sum_probs=96.0

Q ss_pred             EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHH
Q 004913           48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRAL  127 (724)
Q Consensus        48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eF  127 (724)
                      |.|+|..+...++..|+++||+|.|.+..       ..|.|.||||||.+||..|.+.||...+||+|+|.++++++++|
T Consensus         1 ~~~~v~~p~~~~~~~g~~~y~~Y~I~~~~-------~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~f   73 (125)
T cd06862           1 YHCTVTNPKKESKFKGLKSFIAYQITPTH-------TNVTVSRRYKHFDWLYERLVEKYSCIAIPPLPEKQVTGRFEEDF   73 (125)
T ss_pred             CEEEEcCccccCCCCCCcCEEEEEEEEec-------CcEEEEEecHHHHHHHHHHHHHCCCCCCCCCCCCccccCCCHHH
Confidence            45677777665544577899999999832       48999999999999999999999998999999999998889999


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcc
Q 004913          128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE  161 (724)
Q Consensus       128 LEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElE  161 (724)
                      |++||.+|+.||++|++||.|++|+.|+.||+.+
T Consensus        74 ie~Rr~~Le~fL~~I~~~p~l~~s~~~~~FL~~~  107 (125)
T cd06862          74 IEKRRERLELWMNRLARHPVLSQSEVFRHFLTCT  107 (125)
T ss_pred             HHHHHHHHHHHHHHHhcCHhhhcChHHHHHcCCc
Confidence            9999999999999999999999999999999876

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX9, SNX18, and similar proteins. They contain an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is loca

>cd07276 PX_SNX16 The phosphoinositide binding Phox Homology domain of Sorting Nexin 16

Probab=99.89  E-value=3.6e-23  Score=186.80  Aligned_cols=106  Identities=24%  Similarity=0.431  Sum_probs=94.0

Q ss_pred             EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC-CCCHH
Q 004913           48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR-MKSRA  126 (724)
Q Consensus        48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg-~~s~e  126 (724)
                      +.|.|.+|.++.+   .++||+|.|+|....    +..|.|.||||||.+||..|++.||. .+|+||||++++ +++++
T Consensus         4 ~~~~i~~~~~~~~---~~~~~vY~I~v~~~~----~~~~~v~RRYsdF~~L~~~L~~~~~~-~~~~lP~K~~~~~~~~~~   75 (110)
T cd07276           4 IRPPILGYEVMEE---RARFTVYKIRVENKV----GDSWFVFRRYTDFVRLNDKLKQMFPG-FRLSLPPKRWFKDNFDPD   75 (110)
T ss_pred             ccceeeeEEEeec---CCCeEEEEEEEEECC----CCEEEEEEehHHHHHHHHHHHHHCCC-CCCCCCCcceecccCCHH
Confidence            4789999987543   468999999996432    36999999999999999999999998 578999998776 57899


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcc
Q 004913          127 LLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE  161 (724)
Q Consensus       127 FLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElE  161 (724)
                      ||++||.+||.||+.|++||.|++|+.|++||+++
T Consensus        76 fie~Rr~~Lq~fL~~ll~~~~l~~s~~~~~FL~~~  110 (110)
T cd07276          76 FLEERQLGLQAFVNNIMAHKDIAKCKLVREFFCLD  110 (110)
T ss_pred             HHHHHHHHHHHHHHHHhcCHhhhcChHHHHHhccC
Confidence            99999999999999999999999999999999875

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX16 contains a central PX domain followed by a coiled-coil region. SNX16 is localized in early and recycling endosomes through the binding of its PX domain to phosphatidylinositol-3-phosphate (PI3P). It plays a role in epidermal growth factor (EGF) signaling by regulating EGF receptor membrane trafficking.

>cd07286 PX_SNX18 The phosphoinositide binding Phox Homology domain of Sorting Nexin 18

Probab=99.89  E-value=3.8e-23  Score=193.33  Aligned_cols=106  Identities=25%  Similarity=0.323  Sum_probs=94.8

Q ss_pred             EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHH
Q 004913           49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALL  128 (724)
Q Consensus        49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eFL  128 (724)
                      .|+|..+...+...|.++||+|.|.+.       ...|.|.||||||+|||..|...||++.+||+|+|.++++++++||
T Consensus         2 ~~~v~dp~k~~~~~G~~~Yv~Y~I~~~-------~~~~~V~RRYsDF~~L~~~L~~~~p~~~IPpLP~K~~~g~f~~~FI   74 (127)
T cd07286           2 QCTIDDPTKQTKFKGMKSYISYKLVPS-------HTGLQVHRRYKHFDWLYARLAEKFPVISVPHIPEKQATGRFEEDFI   74 (127)
T ss_pred             eEEeCCCcccCCCCCCcCEEEEEEEEe-------cCceEEECCCcHHHHHHHHHHHHCCCcEeCCCcCCCcCCCCCHHHH
Confidence            456666665554457789999999862       2479999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCHHHhhccCcc
Q 004913          129 EERRCSLEEWMTKLLSDIDLSRSVSVASFLELE  161 (724)
Q Consensus       129 EERR~gLEkYLqrLLshP~Ls~S~~L~sFLElE  161 (724)
                      ++||++||.||++|+.||.|++|+.|+.||+.+
T Consensus        75 e~Rr~~Lq~FL~ria~hp~L~~s~~~~~FL~~~  107 (127)
T cd07286          75 SKRRKGLIWWMDHMCSHPVLARCDAFQHFLTCP  107 (127)
T ss_pred             HHHHHHHHHHHHHHHcCcccccChHHHHHhcCC
Confidence            999999999999999999999999999999975

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX18, like SNX9, contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. SNX18 is localized to peripheral endosomal structures, and acts in a trafficki

>cd06898 PX_SNX10 The phosphoinositide binding Phox Homology domain of Sorting Nexin 10

Probab=99.89  E-value=6e-23  Score=187.15  Aligned_cols=109  Identities=25%  Similarity=0.284  Sum_probs=94.1

Q ss_pred             EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCC-HHH
Q 004913           49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKS-RAL  127 (724)
Q Consensus        49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s-~eF  127 (724)
                      .|+.|....  +. ++++||+|.|.|.+..+......|.|.||||||.+||..|+..+|...+||||+|+++++++ ++|
T Consensus         3 ~V~dP~~~~--~~-~~~~y~~Y~I~~~~~~~~~~~~~~~v~RRYsdF~~L~~~L~~~~~~~~~p~lP~K~~~~~~~~~~f   79 (113)
T cd06898           3 EVRDPRTHK--ED-DWGSYTDYEIFLHTNSMCFTLKTSCVRRRYSEFVWLRNRLQKNALLIQLPSLPPKNLFGRFNNEGF   79 (113)
T ss_pred             EEeCCcEec--CC-CCCCeEEEEEEEEeCCCccCcCceEEEcchHHHHHHHHHHHHHCCCCcCCCCCCCccccCCCCHHH
Confidence            455555553  21 46789999999976555444578999999999999999999999988899999999888776 999


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCHHHhhccCc
Q 004913          128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL  160 (724)
Q Consensus       128 LEERR~gLEkYLqrLLshP~Ls~S~~L~sFLEl  160 (724)
                      |++||.+||.||++|+.||.|.+++.|+.||+.
T Consensus        80 ie~Rr~~L~~fL~~i~~~p~l~~s~~l~~FL~~  112 (113)
T cd06898          80 IEERQQGLQDFLEKVLQTPLLLSDSRLHLFLQT  112 (113)
T ss_pred             HHHHHHHHHHHHHHHHcChhhccChHHHHhccC
Confidence            999999999999999999999999999999974

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX10 may be involved in the regulation of endosome homeostasis. Its expression induces the formation of giant vacuoles in mammalian cells.

>cd06864 PX_SNX4 The phosphoinositide binding Phox Homology domain of Sorting Nexin 4

Probab=99.89  E-value=6.2e-23  Score=191.22  Aligned_cols=113  Identities=19%  Similarity=0.317  Sum_probs=94.3

Q ss_pred             EEEecceEEccCCCC---CCCeEEEEEEEeeecCCC----CCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc-
Q 004913           49 CVTIPSWVVLPKSRD---SDPVVFYRVQVGLQSPEG----ITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL-  120 (724)
Q Consensus        49 ~VsIPS~~~v~~s~~---sk~yVvY~IqV~iqspeg----i~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~f-  120 (724)
                      .|+|........+.+   +++||+|.|+|.+..+..    ....|.|.||||||.+||..|...||...+||||+|+++ 
T Consensus         2 ~i~v~~~e~~~~~~~~~~~~~y~vY~I~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~   81 (129)
T cd06864           2 EITVTEAEKRTGGSAMNLKETYTVYLIETKIVEHESEEGLSKKLSSLWRRYSEFELLRNYLVVTYPYVIVPPLPEKRAMF   81 (129)
T ss_pred             eeEecChhhccCCCCCCCCCCeEEEEEEEEecCCCcccccccCceEEEeCcHHHHHHHHHHHHHCCCCCCCCCCCcceec
Confidence            355666554444333   568999999997655432    257899999999999999999999999999999999753 


Q ss_pred             -------CCCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcc
Q 004913          121 -------RMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE  161 (724)
Q Consensus       121 -------g~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElE  161 (724)
                             ++++++||++||.+||.||++|++||.|++|+.|..||+.+
T Consensus        82 ~~~~~~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~l~~FL~~~  129 (129)
T cd06864          82 MWQKLSSDTFDPDFVERRRAGLENFLLRVAGHPELCQDKIFLEFLTHE  129 (129)
T ss_pred             ccccccccCCCHHHHHHHHHHHHHHHHHHHcChhhhcCcHHHHhcCCC
Confidence                   36789999999999999999999999999999999999753

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It shows a similar domain architecture as SNX1-2, among others, containing a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. SNX4 is implicated in the regulation of

>cd07282 PX_SNX2 The phosphoinositide binding Phox Homology domain of Sorting Nexin 2

Probab=99.89  E-value=5.2e-23  Score=190.60  Aligned_cols=109  Identities=25%  Similarity=0.396  Sum_probs=91.9

Q ss_pred             EEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCC--CCCCCCCCCCcccCC-----
Q 004913           50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFP--KKNIPPAPPKGLLRM-----  122 (724)
Q Consensus        50 VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP--~~~LPpLPPKk~fg~-----  122 (724)
                      |+|..+....+  +.++|++|.|++.+..+......|.|.||||||+|||..|++.||  +..+||+|+|.+++.     
T Consensus         3 i~V~dP~~~~~--g~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~g~~iPplP~K~~~~~~~~~~   80 (124)
T cd07282           3 IGVSDPEKVGD--GMNAYMAYRVTTKTSLSMFSRSEFSVRRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKV   80 (124)
T ss_pred             EEEeCCeEecC--CccCeEEEEEEeccCCCccCCCceEEEEehHHHHHHHHHHHHhCCCCCceeCCCCCCcccccccccc
Confidence            44444444332  567899999999765555556799999999999999999999997  567999999987653     


Q ss_pred             -----CCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCc
Q 004913          123 -----KSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL  160 (724)
Q Consensus       123 -----~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLEl  160 (724)
                           ++++|||+||.+||.||++|++||.|++|+.|+.||+.
T Consensus        81 ~~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~  123 (124)
T cd07282          81 GKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLES  123 (124)
T ss_pred             ccccccCHHHHHHHHHHHHHHHHHHhcCcccccChHHHHhhcC
Confidence                 47899999999999999999999999999999999985

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures efficient cargo sort

>cd06897 PX_SNARE The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi

Probab=99.89  E-value=7.9e-23  Score=182.31  Aligned_cols=103  Identities=32%  Similarity=0.494  Sum_probs=94.2

Q ss_pred             EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC--CCCHH
Q 004913           49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR--MKSRA  126 (724)
Q Consensus        49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg--~~s~e  126 (724)
                      .|+||++...     +++|++|.|.|...     ...|.|.||||||.+||..|++.+|...+|+||+|.+++  +++++
T Consensus         2 ~v~ip~~~~~-----~~~~~~Y~I~v~~~-----~~~~~v~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~~~~~~~~~   71 (108)
T cd06897           2 EISIPTTSVS-----PKPYTVYNIQVRLP-----LRSYTVSRRYSEFVALHKQLESEVGIEPPYPLPPKSWFLSTSSNPK   71 (108)
T ss_pred             eEEcCCeEEc-----CCCeEEEEEEEEcC-----CceEEEEcchHHHHHHHHHHHHHcCCCCCCCCCCcCEecccCCCHH
Confidence            5899999875     36799999999543     469999999999999999999999988889999999887  78899


Q ss_pred             HHHHHHHHHHHHHHHHhccc--CCCCCHHHhhccCcc
Q 004913          127 LLEERRCSLEEWMTKLLSDI--DLSRSVSVASFLELE  161 (724)
Q Consensus       127 FLEERR~gLEkYLqrLLshP--~Ls~S~~L~sFLElE  161 (724)
                      |||+||.+||.||+.|++||  .+++|+.|++||+++
T Consensus        72 ~ie~Rr~~Le~yL~~l~~~~~~~l~~s~~~~~FL~~~  108 (108)
T cd06897          72 LVEERRVGLEAFLRALLNDEDSRWRNSPAVKEFLNLP  108 (108)
T ss_pred             HHHHHHHHHHHHHHHHHcCCccchhcCHHHHHHhCCC
Confidence            99999999999999999999  999999999999874

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of fungal proteins similar to Saccharomyces cerevisiae Vam7p. They contain an N-terminal PX domain and a C-terminal SNARE domain. The SNARE (Soluble NSF attachment protein receptor) family of proteins are integral membrane proteins that serve as key factors for vesicular trafficking. Vam7p is anchored at the vacuolar membrane through the specific interaction of its PX domain with phosphatidylinositol-3-phosphate (PI3P) present in bilayers. It plays an essential role in vacuole fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction.

>cd06863 PX_Atg24p The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein

Probab=99.89  E-value=8.6e-23  Score=185.95  Aligned_cols=110  Identities=26%  Similarity=0.336  Sum_probs=95.3

Q ss_pred             EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc-----CC
Q 004913           48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL-----RM  122 (724)
Q Consensus        48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~f-----g~  122 (724)
                      .+|++|....  + .++++||+|.|.|.+..+.+....|.|.||||||.+||+.|.+.||+..+||||+|..+     ++
T Consensus         3 i~V~dP~~~~--~-~~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~   79 (118)
T cd06863           3 CLVSDPQKEL--D-GSSDTYISYLITTKTNLPSFSRKEFKVRRRYSDFVFLHECLSNDFPACVVPPLPDKHRLEYITGDR   79 (118)
T ss_pred             EEEeCccccc--C-CCccCEEEEEEEEeeCCCCcccCceEEEecHHHHHHHHHHHHHHCcCCcCCCCCCccccccccccC
Confidence            3566666553  1 25789999999997666655567899999999999999999999999999999999754     35


Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCc
Q 004913          123 KSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL  160 (724)
Q Consensus       123 ~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLEl  160 (724)
                      ++++||++||.+||.||++|+.||.|++|+.|..||+.
T Consensus        80 ~~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~l~~FL~s  117 (118)
T cd06863          80 FSPEFITRRAQSLQRFLRRISLHPVLSQSKILHQFLES  117 (118)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCcccccCcHHHhhcCC
Confidence            68999999999999999999999999999999999974

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The yeast Atg24p is a sorting nexin (SNX) which is involved in membrane fusion events at the vacuolar surface during pexophagy. This is facilitated via binding of Atg24p to phosphatidylinositol 3-phosphate (PI3P) through its PX domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway.

>cd06886 PX_SNX27 The phosphoinositide binding Phox Homology domain of Sorting Nexin 27

Probab=99.89  E-value=7.1e-23  Score=184.99  Aligned_cols=103  Identities=27%  Similarity=0.418  Sum_probs=92.9

Q ss_pred             eEEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHH
Q 004913           47 SYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRA  126 (724)
Q Consensus        47 Sy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~e  126 (724)
                      +..|+||++..+.+.  +++||+|.|+|.        ..|.|.||||||.+||..|++.||...+|++|+|++++ ++++
T Consensus         3 ~~~i~Ip~~~~~~~~--~~~yvvY~I~~~--------~~~~v~rRyseF~~L~~~L~~~~~~~~~p~lP~K~~~~-~~~~   71 (106)
T cd06886           3 SVPISIPDYKHVEQN--GEKFVVYNIYMA--------GRQLCSRRYREFANLHQNLKKEFPDFQFPKLPGKWPFS-LSEQ   71 (106)
T ss_pred             cceEecCCcceEcCC--CCcEEEEEEEEc--------CCEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCCcCC-CCHH
Confidence            568999999875543  568999999882        37999999999999999999999998899999999886 4679


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCc
Q 004913          127 LLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL  160 (724)
Q Consensus       127 FLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLEl  160 (724)
                      |||+||.+||.||+.|++||.|++|+.|+.||+-
T Consensus        72 ~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~  105 (106)
T cd06886          72 QLDARRRGLEQYLEKVCSIRVIGESDIMQDFLSD  105 (106)
T ss_pred             HHHHHHHHHHHHHHHHhcCcccccCHHHHHHhcc
Confidence            9999999999999999999999999999999974

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX27 contains an N-terminal PDZ domain followed by a PX domain and a Ras-Associated (RA) domain. It binds G protein-gated potassium (Kir3) channels, which play a role in neuronal excitability control, through its PDZ domain. SNX27 downregulates Kir3 channels by promoting their movement in the endosome, reducing surface

>cd07279 PX_SNX20_21_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21

Probab=99.89  E-value=7.7e-23  Score=184.99  Aligned_cols=110  Identities=26%  Similarity=0.327  Sum_probs=95.6

Q ss_pred             EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCC-CCCCCCCcccCCCCHHH
Q 004913           49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKN-IPPAPPKGLLRMKSRAL  127 (724)
Q Consensus        49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~-LPpLPPKk~fg~~s~eF  127 (724)
                      .+.|+++.++..  ++++||+|.|+|.... .+....|.|.||||||.+||..|++.||... .|++|+|+++++++++|
T Consensus         2 ~~~i~~~~~~~~--~~~~yv~Y~I~v~~~~-~~~~~~~~v~RRYsdF~~L~~~L~~~~p~~~~~~~lP~K~~~~~~~~~~   78 (112)
T cd07279           2 KFEIVSARTVKE--GEKKYVVYQLAVVQTG-DPDTQPAFIERRYSDFLKLYKALRKQHPQLMAKVSFPRKVLMGNFSSEL   78 (112)
T ss_pred             eEEeccCeEEcC--CCeeEEEEEEEEEECC-CCCCceEEEecchHhHHHHHHHHHHHCCCcCCCCCCCCCeecccCCHHH
Confidence            467888887655  4679999999996443 2224679999999999999999999999754 57899999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcc
Q 004913          128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE  161 (724)
Q Consensus       128 LEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElE  161 (724)
                      |++||.+||.||+.|++||.|++|+.|++||+.+
T Consensus        79 ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~  112 (112)
T cd07279          79 IAERSRAFEQFLGHILSIPNLRDSKAFLDFLQGP  112 (112)
T ss_pred             HHHHHHHHHHHHHHHhCCHhhhcChHHHHHhCCC
Confidence            9999999999999999999999999999999863

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX20, SNX21, and similar proteins. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. It may function in the sorting and cycling of PSGL-1 into endosomes. SNX21, also cal

>cd06860 PX_SNX7_30_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30

Probab=99.89  E-value=9.5e-23  Score=186.26  Aligned_cols=109  Identities=23%  Similarity=0.314  Sum_probs=94.2

Q ss_pred             EEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc----CCCCH
Q 004913           50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL----RMKSR  125 (724)
Q Consensus        50 VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~f----g~~s~  125 (724)
                      |+|.++....+  +.++||+|.|.+.+..+......|.|.||||||.|||..|...||+..+||||+|..+    +++++
T Consensus         3 v~V~dP~~~~~--~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPpLP~K~~~~~~~~~~~~   80 (116)
T cd06860           3 ITVDNPEKHVT--TLETYITYRVTTKTTRSEFDSSEYSVRRRYQDFLWLRQKLEESHPTHIIPPLPEKHSVKGLLDRFSP   80 (116)
T ss_pred             EEEcCCeeccC--CCcCEEEEEEEEeeCCCCcCCCceEEEeeHHHHHHHHHHHHHHCCCCccCCCCCcchhhhhcccCCH
Confidence            45555554333  4678999999997666655567999999999999999999999999999999999863    45789


Q ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCc
Q 004913          126 ALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL  160 (724)
Q Consensus       126 eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLEl  160 (724)
                      +||++||.+||.||++|+.||.|++|+.|+.||+.
T Consensus        81 ~fie~Rr~~Le~fL~~i~~hp~l~~s~~l~~FLt~  115 (116)
T cd06860          81 EFVATRMRALHKFLNRIVEHPVLSFNEHLKVFLTA  115 (116)
T ss_pred             HHHHHHHHHHHHHHHHHHcCcccccCcHHHHhhcC
Confidence            99999999999999999999999999999999974

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily consists of SNX7, SNX30, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal

>cd06870 PX_CISK The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase

Probab=99.89  E-value=7.2e-23  Score=184.60  Aligned_cols=105  Identities=31%  Similarity=0.505  Sum_probs=93.4

Q ss_pred             EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC-CCCHHH
Q 004913           49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR-MKSRAL  127 (724)
Q Consensus        49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg-~~s~eF  127 (724)
                      .|+||++.....  .++.|++|.|+|...     ...|.|.||||||.+||..|++.||... |+||+|++++ +.+++|
T Consensus         4 ~~~i~~~~~~~~--~~~~~~~Y~I~v~~~-----~~~~~v~RRYseF~~L~~~L~~~~~~~~-~~lP~K~~~~~~~~~~~   75 (109)
T cd06870           4 SVSIPSSDEDRE--KKKRFTVYKVVVSVG-----RSSWFVFRRYAEFDKLYESLKKQFPASN-LKIPGKRLFGNNFDPDF   75 (109)
T ss_pred             ceeeccceeecc--CCCCeEEEEEEEEEC-----CeEEEEEeehHHHHHHHHHHHHHCcccC-cCCCCCcccccCCCHHH
Confidence            589999886543  468899999999543     3699999999999999999999999864 5799999998 789999


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcc
Q 004913          128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE  161 (724)
Q Consensus       128 LEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElE  161 (724)
                      |++||.+||.||+.|++||.|++|+.|++||+++
T Consensus        76 ie~Rr~~Le~fL~~ll~~p~l~~s~~~~~FL~~~  109 (109)
T cd06870          76 IKQRRAGLDEFIQRLVSDPKLLNHPDVRAFLQMD  109 (109)
T ss_pred             HHHHHHHHHHHHHHHhCCHhhhcChHHHHHhCcC
Confidence            9999999999999999999999999999999874

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Cytokine-independent survival kinase (CISK), also called Serum- and Glucocorticoid-induced Kinase 3 (SGK3), plays a role in cell growth and survival. It is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. CISK/SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. N-terminal to a catalytic kinase domain, CISK contains a PX domain which binds highly phosphorylated PIs, directs membrane localization, and regulates the enzyme's activity.

>cd06894 PX_SNX3_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins

Probab=99.89  E-value=8.3e-23  Score=189.01  Aligned_cols=111  Identities=23%  Similarity=0.294  Sum_probs=94.1

Q ss_pred             EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc--------
Q 004913           49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL--------  120 (724)
Q Consensus        49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~f--------  120 (724)
                      .|+|-.+....+  +.++|++|.|.+.+..+......|.|.||||||.|||..|.+. |+..+||||+|.++        
T Consensus         3 ~i~V~dP~~~~~--~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~iPpLP~K~~~~~~~~~~~   79 (123)
T cd06894           3 EIDVVNPQTHGV--GKKRFTDYEVRMRTNLPVFKKKESSVRRRYSDFEWLRSELERD-SKIVVPPLPGKALKRQLPFRGD   79 (123)
T ss_pred             EEEEeCCcEecC--CCcCEEEEEEEEecCCcccccCccEEEecCHHHHHHHHHHHHc-CCCccCCCCCCceecccccccc
Confidence            344555544333  4689999999997666655567999999999999999999876 88899999999864        


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcch
Q 004913          121 -RMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEA  162 (724)
Q Consensus       121 -g~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa  162 (724)
                       ++++++|||+||.+|+.||++|++||.|++|+.|+.||+.+.
T Consensus        80 ~~~~~~~fie~Rr~~L~~fL~~i~~hp~l~~s~~~~~FL~~~~  122 (123)
T cd06894          80 DGIFEEEFIEERRKGLETFINKVAGHPLAQNEKCLHMFLQEET  122 (123)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHcChhhccCCHHHHhcCCCC
Confidence             567899999999999999999999999999999999998764

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily is composed of SNX3, SNX12, and fungal Grd19. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. SNX3/Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the

>cd07295 PX_Grd19 The phosphoinositide binding Phox Homology domain of fungal Grd19

Probab=99.89  E-value=1.2e-22  Score=186.31  Aligned_cols=112  Identities=22%  Similarity=0.243  Sum_probs=96.3

Q ss_pred             EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHH
Q 004913           49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALL  128 (724)
Q Consensus        49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eFL  128 (724)
                      .|.|-.+....+  +.+.|++|.|.+.+..+......|.|.||||||.+||..|+..||...+||+|+|.++++++++||
T Consensus         3 ~i~V~dP~~~~~--g~~~y~~Y~I~~~t~~~~f~~~~~~V~RRysdF~~L~~~L~~~~~~~~iPplP~K~~~~~~~~~~i   80 (116)
T cd07295           3 EIEVRNPKTHGI--GRGMFTDYEIVCRTNIPAFKLRVSSVRRRYSDFEYFRDILERESPRVMIPPLPGKIFTNRFSDEVI   80 (116)
T ss_pred             EEEEeCCcEecC--CCCCEEEEEEEEEeCCccccccceEEecChhHHHHHHHHHHHHCCCCccCCCCCCccccCCCHHHH
Confidence            344444444333  568899999998766665556789999999999999999999999999999999998888899999


Q ss_pred             HHHHHHHHHHHHHHhcccCCC-CCHHHhhccCcch
Q 004913          129 EERRCSLEEWMTKLLSDIDLS-RSVSVASFLELEA  162 (724)
Q Consensus       129 EERR~gLEkYLqrLLshP~Ls-~S~~L~sFLElEa  162 (724)
                      |+||.+||.||++|+.||.|+ +++.|+.||+.+.
T Consensus        81 e~Rr~~Le~fL~~i~~~p~l~~~s~~~~~FL~~~~  115 (116)
T cd07295          81 EERRQGLETFLQSVAGHPLLQTGSKVLAAFLQDPK  115 (116)
T ss_pred             HHHHHHHHHHHHHHhcCHhhhhCCHHHHHhcCCCC
Confidence            999999999999999999998 6899999999864

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer.

>cd06867 PX_SNX41_42 The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42

Probab=99.88  E-value=8.5e-23  Score=184.71  Aligned_cols=101  Identities=24%  Similarity=0.436  Sum_probs=88.4

Q ss_pred             EEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC--------
Q 004913           50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR--------  121 (724)
Q Consensus        50 VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg--------  121 (724)
                      |.|+....+.+. ++++||+|.|+|.         .|+|.||||||.+||..|++.||...+||||+|..+.        
T Consensus         2 ~~i~~~~~~~~~-~~~~y~~Y~I~~~---------~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~   71 (112)
T cd06867           2 IQIVDAGKSSEG-GSGSYIVYVIRLG---------GSEVKRRYSEFESLRKNLTRLYPTLIIPPIPEKHSLKDYAKKPSK   71 (112)
T ss_pred             cEEccCccccCC-CccCEEEEEEEee---------eEEEEeccHHHHHHHHHHHHHCcCCCcCCCCCcchhhhhcccccc
Confidence            456777665443 4678999999983         4999999999999999999999999999999997542        


Q ss_pred             -CCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCc
Q 004913          122 -MKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL  160 (724)
Q Consensus       122 -~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLEl  160 (724)
                       +++++|||+||.+||.||+.|+.||.|++|+.|++||+.
T Consensus        72 ~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~  111 (112)
T cd06867          72 AKNDAKIIERRKRMLQRFLNRCLQHPILRNDIVFQKFLDP  111 (112)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHhcChhhccCcHHHHhcCC
Confidence             467999999999999999999999999999999999975

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX41 and SNX42 (also called Atg20p) form dimers with SNX4, and are required in protein recycling from the sorting endosome (post-Golgi endosome) back

>cd06859 PX_SNX1_2_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2

Probab=99.88  E-value=1e-22  Score=183.19  Aligned_cols=110  Identities=25%  Similarity=0.459  Sum_probs=94.4

Q ss_pred             EEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCH--HH
Q 004913           50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSR--AL  127 (724)
Q Consensus        50 VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~--eF  127 (724)
                      |.|..+..+.+  +.++||+|.|.|.+..+++....|.|.||||||.+||+.|++.||+..+|+||+|.+++..+.  +|
T Consensus         3 ~~V~~p~~~~~--~~~~y~~Y~I~v~~~~~~~~~~~~~v~RRyseF~~L~~~L~~~~~~~~~P~lP~k~~~~~~~~~~~~   80 (114)
T cd06859           3 ISVTDPVKVGD--GMSAYVVYRVTTKTNLPDFKKSEFSVLRRYSDFLWLYERLVEKYPGRIVPPPPEKQAVGRFKVKFEF   80 (114)
T ss_pred             EEEeCcceecC--CccCEEEEEEEeecCCCCCCCCceEEEEChHHHHHHHHHHHHHCCCCEeCCCCCCcccCccCccHHH
Confidence            44555554433  467999999999766655556789999999999999999999999989999999998887654  59


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcc
Q 004913          128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE  161 (724)
Q Consensus       128 LEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElE  161 (724)
                      |++||.+||.||+.|++||.|++|+.|+.||+.+
T Consensus        81 ie~Rr~~L~~fL~~i~~~p~l~~s~~~~~Fl~~~  114 (114)
T cd06859          81 IEKRRAALERFLRRIAAHPVLRKDPDFRLFLESD  114 (114)
T ss_pred             HHHHHHHHHHHHHHHhcChhhccCcHHHhhcCCC
Confidence            9999999999999999999999999999999754

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX1, SNX2, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. SNX1 and SNX2 are components of the retromer complex,

>cd07301 PX_SNX21 The phosphoinositide binding Phox Homology domain of Sorting Nexin 21

Probab=99.88  E-value=1.5e-22  Score=184.41  Aligned_cols=110  Identities=19%  Similarity=0.251  Sum_probs=94.7

Q ss_pred             EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCC-CCCCCCcccCCCCHHH
Q 004913           49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNI-PPAPPKGLLRMKSRAL  127 (724)
Q Consensus        49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~L-PpLPPKk~fg~~s~eF  127 (724)
                      .|.|+++.++.+  +++.||+|+|+|.. .+......|.|.||||||.+||..|+..||.... +++|+|+++++++++|
T Consensus         2 ~~~v~~~~~~~~--~~~~yv~Y~I~v~~-~~~~~~~~~~V~RRYSdF~~L~~~L~~~~~~~~~~~~~P~K~~~~~~~~~~   78 (112)
T cd07301           2 LFEVTDANVVQD--AHSKYVLYTIYVIQ-TGQYDPSPAYISRRYSDFERLHRRLRRLFGGEMAGVSFPRKRLRKNFTAET   78 (112)
T ss_pred             EEEECCCeEecc--CCcCEEEEEEEEEe-cCCCCCCceEEEeehHhHHHHHHHHHHHCCCcCCCCCCCCCcccCCCCHHH
Confidence            467788877654  46789999999952 2223356899999999999999999999997533 5899999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcc
Q 004913          128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE  161 (724)
Q Consensus       128 LEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElE  161 (724)
                      |++||.+||.||++|++||.|+.|+.|++||.++
T Consensus        79 ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~l~  112 (112)
T cd07301          79 IAKRSRAFEQFLCHLHSLPELRASPAFLEFFYLR  112 (112)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHhcChHHHHHhCCC
Confidence            9999999999999999999999999999999874

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX21, also called SNX-L, is distinctly and highly-expressed in fetal liver and may be involved in protein sorting and degradation during embryonic liver development.

>cd06873 PX_SNX13 The phosphoinositide binding Phox Homology domain of Sorting Nexin 13

Probab=99.88  E-value=1.9e-22  Score=185.31  Aligned_cols=112  Identities=27%  Similarity=0.376  Sum_probs=99.7

Q ss_pred             eEEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHH
Q 004913           47 SYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRA  126 (724)
Q Consensus        47 Sy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~e  126 (724)
                      -.+++|+++..+.+  +++.||+|.|+|....+++....|.|.||||||.+||..|++.||...+|++|+|.++++.+++
T Consensus         4 ~~~~~i~~~~~~~~--~~~~y~~Y~I~v~~~~~~~~~~~~~V~RRYseF~~L~~~L~~~~p~~~~~~lP~K~~~~~~~~~   81 (120)
T cd06873           4 KLTAVIINTGIVKE--HGKTYAVYAISVTRIYPNGQEESWHVYRRYSDFHDLHMRLKEKFPNLSKLSFPGKKTFNNLDRA   81 (120)
T ss_pred             EEEEEEeccEEEcc--CCceEEEEEEEEEEecCCCCccceEEEeehHHHHHHHHHHHHHCcCCCCCCCCCCcccCCCCHH
Confidence            35889999998765  5788999999997766554567999999999999999999999998888999999999988999


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCCH----HHhhccCc
Q 004913          127 LLEERRCSLEEWMTKLLSDIDLSRSV----SVASFLEL  160 (724)
Q Consensus       127 FLEERR~gLEkYLqrLLshP~Ls~S~----~L~sFLEl  160 (724)
                      ||++||.+||.||+.|+++|.|++|+    .|.+||+.
T Consensus        82 ~ie~Rr~~Le~fL~~ll~~~~l~~~~~~~~~l~~FL~~  119 (120)
T cd06873          82 FLEKRRKMLNQYLQSLLNPEVLDANPGLQEIVLDFLEP  119 (120)
T ss_pred             HHHHHHHHHHHHHHHHhCCHhhccCHHHHHHHHHHcCC
Confidence            99999999999999999999999995    67777763

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX13, also called RGS-PX1, contains an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. It specifically binds to the stimulatory subunit of the heterotrimeric G protein G(alpha)s, serving as its GTPase activating protein, throug

>cd07300 PX_SNX20 The phosphoinositide binding Phox Homology domain of Sorting Nexin 20

Probab=99.88  E-value=1.5e-22  Score=185.32  Aligned_cols=110  Identities=27%  Similarity=0.330  Sum_probs=95.2

Q ss_pred             EEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCC-CCCCCCCCcccCCCCHHHH
Q 004913           50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKK-NIPPAPPKGLLRMKSRALL  128 (724)
Q Consensus        50 VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~-~LPpLPPKk~fg~~s~eFL  128 (724)
                      +.||++..+..  +.++||+|.|.|. +.+......|+|.||||||.+||..|.+.|+.. ..|++|+|+++++++++||
T Consensus         3 ~~i~~~~~~~~--~~~~yv~Y~i~~~-~~g~~~~~~~~v~RRYSdF~~L~~~L~~~~~~~~~~~~lP~K~~~~~~~~~~i   79 (114)
T cd07300           3 FEIPSARIIEQ--TISKHVVYQIIVI-QTGSFDCNKVVIERRYSDFLKLHQELLSDFSEELEDVVFPKKKLTGNFSEEII   79 (114)
T ss_pred             EEecCceeecc--CCcceEEEEEEEE-EecCccCceEEEEeccHhHHHHHHHHHHHccccCCCCCCCCCcccCCCCHHHH
Confidence            68999987644  4577999999873 222233569999999999999999999999864 4788999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCHHHhhccCcch
Q 004913          129 EERRCSLEEWMTKLLSDIDLSRSVSVASFLELEA  162 (724)
Q Consensus       129 EERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa  162 (724)
                      ++||.+||.||++|++||.|+.|+.|++||+.+.
T Consensus        80 e~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~~  113 (114)
T cd07300          80 AERRVALRDYLTLLYSLRFVRRSQAFQDFLTHPE  113 (114)
T ss_pred             HHHHHHHHHHHHHHhcCHhhhcChHHHHHhCCcc
Confidence            9999999999999999999999999999998763

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. The PX dom

>cd07293 PX_SNX3 The phosphoinositide binding Phox Homology domain of Sorting Nexin 3

Probab=99.88  E-value=1.7e-22  Score=187.27  Aligned_cols=110  Identities=21%  Similarity=0.318  Sum_probs=94.7

Q ss_pred             EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc--------
Q 004913           49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL--------  120 (724)
Q Consensus        49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~f--------  120 (724)
                      .|.|..+....+  +.++||+|.|.+.+..|......|.|.||||||.|||..|+.. |+..+||||+|.++        
T Consensus         3 ~i~v~dP~~~~~--~~~~y~~Y~I~~~t~~p~~~~~~~~V~RRYsDF~~L~~~L~~~-~~~~iPpLP~K~~~~~~~~~~~   79 (123)
T cd07293           3 EIDVTNPQTVGV--GRGRFTTYEIRLKTNLPIFKLKESTVRRRYSDFEWLRSELERE-SKVVVPPLPGKALFRQLPFRGD   79 (123)
T ss_pred             EEEecCCeEecC--CCcCEEEEEEEEEeCCCccccCceEEECCchHHHHHHHHHHhc-cCCccCCCCCCchhhhcccccc
Confidence            455666655444  4689999999998777766567999999999999999999865 77889999999865        


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcc
Q 004913          121 -RMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE  161 (724)
Q Consensus       121 -g~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElE  161 (724)
                       ++++++|||+||++||.||++|++||.|++|+.|+.||+.+
T Consensus        80 ~~~~~~~fie~Rr~~Le~FL~~i~~hP~l~~~~~l~~FL~~~  121 (123)
T cd07293          80 DGIFDDSFIEERKQGLEQFLNKVAGHPLAQNERCLHMFLQDE  121 (123)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHcCcccccCcHHHhhcCCC
Confidence             36789999999999999999999999999999999999875

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX3 associates with early endosomes through a PX domain-mediated interaction with phosphatidylinositol-3-phosphate (PI3P). It associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor f

>cd07283 PX_SNX30 The phosphoinositide binding Phox Homology domain of Sorting Nexin 30

Probab=99.88  E-value=1.6e-22  Score=185.69  Aligned_cols=109  Identities=25%  Similarity=0.289  Sum_probs=93.7

Q ss_pred             EEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc----CCCCH
Q 004913           50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL----RMKSR  125 (724)
Q Consensus        50 VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~f----g~~s~  125 (724)
                      |.|.++....+  +.++|++|.|.+.+..+.+....|.|.||||||+|||..|...||+..+||||+|..+    +++++
T Consensus         3 i~V~dP~~~~~--~~~~y~~Y~I~t~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~p~~~iPpLP~K~~~~~~~~~~~~   80 (116)
T cd07283           3 VTVDDPKKHVC--TMETYITYRVTTKTTRTEFDLPEYSVRRRYQDFDWLRNKLEESQPTHLIPPLPEKFVVKGVVDRFSE   80 (116)
T ss_pred             EEEcCcceecC--CCcCeEEEEEEEecCCCCcccCceEEeCCccHHHHHHHHHHHhCCCcccCCCCCcccccccccCCCH
Confidence            34444444332  4678999999998777777778999999999999999999999999999999999643    34679


Q ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCc
Q 004913          126 ALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL  160 (724)
Q Consensus       126 eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLEl  160 (724)
                      +|||+||.+||.||++|+.||.|++|+.|..||..
T Consensus        81 ~fie~Rr~~Le~FL~~i~~hp~L~~s~~~~~FLt~  115 (116)
T cd07283          81 EFVETRRKALDKFLKRIADHPVLSFNEHFNVFLTA  115 (116)
T ss_pred             HHHHHHHHHHHHHHHHHHcCcccccCcHHHHhhcC
Confidence            99999999999999999999999999999999974

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX30 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-8, and SNX32

>cd06881 PX_SNX15_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins

Probab=99.88  E-value=1.5e-22  Score=185.29  Aligned_cols=109  Identities=22%  Similarity=0.309  Sum_probs=94.3

Q ss_pred             ceEEEEecceEEccCCCCCCCeEEEEEEEeeec--CCCCCcceEEEccchhHHHHHHHHHHHCCC----CCCCCCCCCcc
Q 004913           46 WSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQS--PEGITTTRGVLRRFNNFLKLFTDLKKAFPK----KNIPPAPPKGL  119 (724)
Q Consensus        46 wSy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqs--pegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~----~~LPpLPPKk~  119 (724)
                      |+..++|+.+...     +++||+|.|.+.+..  ..+....|.|.||||||.+||..|++.||.    ..+||||+|++
T Consensus         1 ~~~~~~V~d~~~~-----~~~~t~Y~I~~~~~~~~~~~~~~~~~V~rRYsdF~~L~~~L~~~~~~~~~~~~~P~lP~K~~   75 (117)
T cd06881           1 WSRSFTVTDTRRH-----KKGYTEYKITSKVFSRSVPEDVSEVVVWKRYSDFKKLHRELSRLHKQLYLSGSFPPFPKGKY   75 (117)
T ss_pred             CcEEEEecCccee-----cCceEEEEEEEEecCCCCccccceEEEECcHHHHHHHHHHHHHHhhhccccCcCCCCCCCcc
Confidence            7788899888864     257999999996421  112235899999999999999999999863    35799999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccC
Q 004913          120 LRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLE  159 (724)
Q Consensus       120 fg~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLE  159 (724)
                      +++++++||++||.+||.||++|++||.|++|+.|++||+
T Consensus        76 ~g~~~~~~IeeRr~~Le~fL~~i~~~p~l~~s~~~~~Fl~  115 (117)
T cd06881          76 FGRFDAAVIEERRQAILELLDFVGNHPALYQSSAFQQFFE  115 (117)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHhCCHhhhcChHHHHHhc
Confidence            9999999999999999999999999999999999999996

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily have similarity to sorting nexin 15 (SNX15), which contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNX15 plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein. Other members of this subfamily cont

>cd07294 PX_SNX12 The phosphoinositide binding Phox Homology domain of Sorting Nexin 12

Probab=99.88  E-value=2.1e-22  Score=189.02  Aligned_cols=117  Identities=23%  Similarity=0.296  Sum_probs=100.5

Q ss_pred             EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc-------
Q 004913           48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL-------  120 (724)
Q Consensus        48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~f-------  120 (724)
                      +.|+|-++..+.+  +.++||+|.|.+.+..|.+....|.|.||||||.|||+.|.+. |+..+||||+|.++       
T Consensus         4 ~~i~v~dP~~~~~--g~~~yt~Y~V~~~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~~-~g~~iPpLP~K~~~~~~~~~~   80 (132)
T cd07294           4 LEIDIFNPQTVGV--GRNRFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERD-SKIVVPPLPGKALKRQLPFRG   80 (132)
T ss_pred             EEEEeeCCeEecC--CCCCEEEEEEEEEeCCCCcccceeEEeCCccHHHHHHHHHHHc-CCCccCCCCCCceeccccccc
Confidence            4677777766554  5688999999987666655567999999999999999999865 77789999999852       


Q ss_pred             --CCCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcchhhhhh
Q 004913          121 --RMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAARSS  167 (724)
Q Consensus       121 --g~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa~aRs~  167 (724)
                        ++++++||++||.+||.||++|++||.|++++.|+.||+.+...|.|
T Consensus        81 ~~~~~~~~fie~Rr~~Le~FL~~i~~hp~l~~~~~l~~FL~~~~~~~~~  129 (132)
T cd07294          81 DEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQDETIDRNY  129 (132)
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHhcCCCCcCccc
Confidence              35689999999999999999999999999999999999999887765

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. The specific function of SNX12 has yet to be elucidated.

>cd06876 PX_MDM1p The phosphoinositide binding Phox Homology domain of yeast MDM1p

Probab=99.88  E-value=3.1e-22  Score=186.36  Aligned_cols=111  Identities=27%  Similarity=0.398  Sum_probs=98.8

Q ss_pred             EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCC--CH
Q 004913           48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMK--SR  125 (724)
Q Consensus        48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~--s~  125 (724)
                      +.|.||++....+. ++++|++|.|+|....++.....|.|.||||||.+||..|++.||...+|+||+|++++..  ++
T Consensus        20 ~~i~I~~~~~~~~~-~~k~~~~Y~I~v~~~~~~~~~~~w~V~RRYseF~~Lh~~L~~~~~~~~~p~~P~K~~~~~~~~~~   98 (133)
T cd06876          20 TRVSIQSYISDVEE-EGKEFVVYLIEVQRLNNDDQSSGWVVARRYSEFLELHKYLKKRYPGVLKLDFPQKRKISLKYSKT   98 (133)
T ss_pred             ceEEEeeEEeeecC-CCceEEEEEEEEEEcCCCCCcccEEEEeEhHHHHHHHHHHHHHCcCCCCCCCCccccccCccCCH
Confidence            58999999875543 4789999999997655432346999999999999999999999999889999999988865  79


Q ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccC
Q 004913          126 ALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLE  159 (724)
Q Consensus       126 eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLE  159 (724)
                      +||++||.+||.||+.|+.+|.+++|+.|..||+
T Consensus        99 ~~ie~Rr~~Le~yL~~Ll~~~~l~~s~~l~~FLs  132 (133)
T cd06876          99 LLVEERRKALEKYLQELLKIPEVCEDEEFRKFLS  132 (133)
T ss_pred             HHHHHHHHHHHHHHHHHHcCccccCChHHHHhhc
Confidence            9999999999999999999999999999999995

The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Yeast MDM1p is a filament-like protein localized in punctate structures distributed throughout the cytoplasm. It plays an important role in nuclear and mitochondrial transmission to daughter buds. Members of this subfamily show similar domain architectures as some sorting nexins (SNXs). Some members are similar to SNX19 in that they contain an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. Others are similar to SNX13 and SNX14, which also harbor these three domains as well as a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regul

>cd07284 PX_SNX7 The phosphoinositide binding Phox Homology domain of Sorting Nexin 7

Probab=99.87  E-value=4.6e-22  Score=182.83  Aligned_cols=98  Identities=26%  Similarity=0.382  Sum_probs=89.6

Q ss_pred             CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC----CCCHHHHHHHHHHHHHH
Q 004913           63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR----MKSRALLEERRCSLEEW  138 (724)
Q Consensus        63 ~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg----~~s~eFLEERR~gLEkY  138 (724)
                      +.++|+.|.|.+.+..+......|.|.||||||.|||..|...||+..+||+|+|.+++    .++++||++||++||.|
T Consensus        14 ~~~~y~~Y~V~t~t~~~~~~~~~~~V~RRysDF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~Rr~~Le~F   93 (116)
T cd07284          14 AIETFITYRVMTKTSRSEFDSSEFEVRRRYQDFLWLKGRLEEAHPTLIIPPLPEKFVMKGMVERFNEDFIETRRKALHKF   93 (116)
T ss_pred             CCcCeEEEEEEEeeCCCCcCCCceEEeCCchHHHHHHHHHHHHCCCceeCCCCCcchhhhccccCCHHHHHHHHHHHHHH
Confidence            56799999999987777766789999999999999999999999999999999997543    46899999999999999


Q ss_pred             HHHHhcccCCCCCHHHhhccCc
Q 004913          139 MTKLLSDIDLSRSVSVASFLEL  160 (724)
Q Consensus       139 LqrLLshP~Ls~S~~L~sFLEl  160 (724)
                      |++|+.||.|++|+.|+.||+.
T Consensus        94 L~ri~~hp~L~~s~~~~~FL~~  115 (116)
T cd07284          94 LNRIADHPTLTFNEDFKIFLTA  115 (116)
T ss_pred             HHHHHcCcccccChHHHHhhcC
Confidence            9999999999999999999974

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX7 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-6, SNX8, SNX30,

>cd06893 PX_SNX19 The phosphoinositide binding Phox Homology domain of Sorting Nexin 19

Probab=99.87  E-value=3e-22  Score=187.88  Aligned_cols=111  Identities=31%  Similarity=0.390  Sum_probs=90.9

Q ss_pred             EEecceEEccCCC--CCCCeEEEEEEEeeec-----------CCCCCcceEEEccchhHHHHHHHHHHHCC--CCCCCCC
Q 004913           50 VTIPSWVVLPKSR--DSDPVVFYRVQVGLQS-----------PEGITTTRGVLRRFNNFLKLFTDLKKAFP--KKNIPPA  114 (724)
Q Consensus        50 VsIPS~~~v~~s~--~sk~yVvY~IqV~iqs-----------pegi~~~w~V~RRYSDF~~Lh~~Lkk~fP--~~~LPpL  114 (724)
                      |+||+|+..++..  |.++||+|.|++.+..           |......|.|.||||||++||..|+...+  ....+++
T Consensus         2 ~~i~~~i~~~e~~g~g~~~y~~Y~V~~~t~~~~~~~~~~~~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~~~~~~~~~~~   81 (132)
T cd06893           2 IRIPKTITAKEYKGTGTHPYTLYTVQYETILDVQSEQNPNAASEQPLATHTVNRRFREFLTLQTRLEENPKFRKIMNVKG   81 (132)
T ss_pred             ccccceeecchhcCCCCCCeEEEEEEeccCcchhcccccccccccccCeEEEECchHHHHHHHHHHHHccCcccccccCC
Confidence            7899999876553  5679999999985432           23445799999999999999999998643  1222456


Q ss_pred             CCCcc----cCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCc
Q 004913          115 PPKGL----LRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL  160 (724)
Q Consensus       115 PPKk~----fg~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLEl  160 (724)
                      |+|++    +++++++|||+||.+||.||++|++||.|++|++|++||.+
T Consensus        82 P~k~~p~lp~g~~d~~fie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~  131 (132)
T cd06893          82 PPKRLFDLPFGNMDKDKIEARRGLLETFLRQLCSIPEISNSEEVQEFLAY  131 (132)
T ss_pred             CCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCHhhhcCHHHHHHHcc
Confidence            66654    57788999999999999999999999999999999999975

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX19 contains an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. These domains are also found in SNX13 and SNX14, which also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNX19 interacts with IA-2, a major autoantigen found

>cd06878 PX_SNX25 The phosphoinositide binding Phox Homology domain of Sorting Nexin 25

Probab=99.87  E-value=5.7e-22  Score=184.39  Aligned_cols=111  Identities=23%  Similarity=0.320  Sum_probs=94.1

Q ss_pred             EEEEecceEEccCCCCCCCeEEEEEEEeeec-----CCCCCcceEEEccchhHHHHHHHHHHHCCCC--CCCCCCCCccc
Q 004913           48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQS-----PEGITTTRGVLRRFNNFLKLFTDLKKAFPKK--NIPPAPPKGLL  120 (724)
Q Consensus        48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqs-----pegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~--~LPpLPPKk~f  120 (724)
                      |.|.||+...+..  +++.|++|.|.|....     ++.....|+|.||||||..||.+|++.||..  ..+|+|||+++
T Consensus         9 w~~~I~~~~~~~~--~~~~~~vY~I~V~~~~~~~~~~~~~~~~W~V~RRYsdF~~Lh~~Lk~~~~~~~~~~lP~ppKk~~   86 (127)
T cd06878           9 WRANIQSAEVTVE--DDKEVPLYVIVVHVSEVGLNEDESISSGWVVTRKLSEFHDLHRKLKECSSWLKKVELPSLSKKWF   86 (127)
T ss_pred             ceEEEeeeEEEcC--CCeEEEEEEEEEEEecCCCCCCCCCcceEEEEEeHHHHHHHHHHHHHHCCCccccCCCCCCcccc
Confidence            4899999987444  5688999999997653     2334678999999999999999999999963  23345667777


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCc
Q 004913          121 RMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL  160 (724)
Q Consensus       121 g~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLEl  160 (724)
                      +..+++|||+||.+||+||+.|+.+|.|++|+.|.+||+.
T Consensus        87 ~~~~~~fle~Rr~~Le~YLq~ll~~~~l~~s~~l~~FLsp  126 (127)
T cd06878          87 KSIDKKFLDKSKNQLQKYLQFILEDETLCQSEALYSFLSP  126 (127)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHhCChhhcCCHHHHHHcCC
Confidence            7789999999999999999999999999999999999974

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. The function of SNX25 is not yet known. It has been found in exosomes from human malignant pleural effusions. SNX25 shows the same domain architecture as SNX13 and SNX14, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some S

>cd07285 PX_SNX9 The phosphoinositide binding Phox Homology domain of Sorting Nexin 9

Probab=99.87  E-value=5.5e-22  Score=185.40  Aligned_cols=107  Identities=21%  Similarity=0.279  Sum_probs=91.9

Q ss_pred             EEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC-CCCCCCCCCcccCCCCHHHH
Q 004913           50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK-KNIPPAPPKGLLRMKSRALL  128 (724)
Q Consensus        50 VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~-~~LPpLPPKk~fg~~s~eFL  128 (724)
                      |.|..+....+..+.+.||.|.|...       +..+.|.||||||+|||..|...||. ..+||+|+|.++++++++||
T Consensus         3 ~~V~dp~k~~~~~g~~~Yv~Y~I~~~-------~~~~~V~RRYsDF~~L~~~L~~~~~~~i~vPplP~K~~~g~f~~~FI   75 (126)
T cd07285           3 CVVADPRKGSKMYGLKSYIEYQLTPT-------NTNRSVNHRYKHFDWLYERLLVKFGLAIPIPSLPDKQVTGRFEEEFI   75 (126)
T ss_pred             EEEcCcccccCCCCCcCeEEEEEEec-------cCCeEeeCCccHHHHHHHHHHHhcCCCcccCCCCCccccCCCCHHHH
Confidence            44445554444456789999999873       24789999999999999999999974 56999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCHHHhhccCcchh
Q 004913          129 EERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAA  163 (724)
Q Consensus       129 EERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa~  163 (724)
                      ++||.+||.||++|++||.|++++.|+.||+....
T Consensus        76 e~Rr~~Le~FL~ri~~hP~L~~~~~l~~FL~~~~~  110 (126)
T cd07285          76 KMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDE  110 (126)
T ss_pred             HHHHHHHHHHHHHHHcCcCcCCCcHHHHHhCCCCH
Confidence            99999999999999999999999999999987543

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. T

>cd06872 PX_SNX19_like_plant The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins

Probab=99.87  E-value=5.5e-22  Score=179.68  Aligned_cols=103  Identities=31%  Similarity=0.376  Sum_probs=89.4

Q ss_pred             EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc-CCCCHHH
Q 004913           49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL-RMKSRAL  127 (724)
Q Consensus        49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~f-g~~s~eF  127 (724)
                      .|.|.....+..  ++++|++|.|.|....    ...|.|.||||||.+||..|++ +|.. .|+||||+++ ++.+++|
T Consensus         2 ~~~v~~~~~~~~--~~~~y~vY~I~v~~~~----~~~w~v~RRYsdF~~L~~~L~~-~~~~-~~~lP~K~~~~~~~~~~f   73 (107)
T cd06872           2 SCRVLGAEIVKS--GSKSFAVYSVAVTDNE----NETWVVKRRFRNFETLHRRLKE-VPKY-NLELPPKRFLSSSLDGAF   73 (107)
T ss_pred             eeEEeeeEEEec--CCccEEEEEEEEEECC----CceEEEEehHHHHHHHHHHHHh-ccCC-CCCCCCccccCCCCCHHH
Confidence            578888887644  4678999999995322    3699999999999999999997 5654 5789999887 5778999


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCHHHhhccC
Q 004913          128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLE  159 (724)
Q Consensus       128 LEERR~gLEkYLqrLLshP~Ls~S~~L~sFLE  159 (724)
                      |++||.+||.||+.|+++|.|++|+.|++||.
T Consensus        74 ie~Rr~~Le~yL~~l~~~p~i~~s~~~~~FL~  105 (107)
T cd06872          74 IEERCKLLDKYLKDLLVIEKVAESHEVWSFLS  105 (107)
T ss_pred             HHHHHHHHHHHHHHHhcChhhhcCHHHHHHhc
Confidence            99999999999999999999999999999995

The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized plant proteins containing an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some sorting nexins (SNXs). This is the same domain architecture found in SNX19. SNX13 and SNX14 also contain these three domains but also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction dom

>cd06875 PX_IRAS The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected

Probab=99.87  E-value=6.8e-22  Score=181.19  Aligned_cols=104  Identities=26%  Similarity=0.377  Sum_probs=94.0

Q ss_pred             EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHH
Q 004913           48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRAL  127 (724)
Q Consensus        48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eF  127 (724)
                      ..|+||++...      +.||+|.|+|.+.     ...|.|.||||||.+||..|++.++ ...|++|||+++++.+++|
T Consensus         4 ~~v~I~~~~~~------~~~~~Y~I~V~~~-----~~~w~V~RRYseF~~L~~~L~~~~~-~~~~~~P~Kk~~~~~~~~~   71 (116)
T cd06875           4 TKIRIPSAETV------EGYTVYIIEVKVG-----SVEWTVKHRYSDFAELHDKLVAEHK-VDKDLLPPKKLIGNKSPSF   71 (116)
T ss_pred             EEEEECCEEEE------CCEEEEEEEEEEC-----CeEEEEEecHHHHHHHHHHHHHHcC-cccCcCCCccccCCCCHHH
Confidence            47999999863      6799999999643     3589999999999999999999994 4678899999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcchh
Q 004913          128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAA  163 (724)
Q Consensus       128 LEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa~  163 (724)
                      |++||.+||.||+.|++++.++.|+.|++||++..+
T Consensus        72 ie~Rr~~Le~yL~~ll~~~~~~~s~~l~~FL~~~~~  107 (116)
T cd06875          72 VEKRRKELEIYLQTLLSFFQKTMPRELAHFLDFHKY  107 (116)
T ss_pred             HHHHHHHHHHHHHHHHhhhcccCCHHHHHHhCCCce
Confidence            999999999999999999999999999999998864

The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Imidazoline Receptor Antisera-Selected (IRAS), also called nischarin, contains an N-terminal PX domain, leucine rich repeats, and a predicted coiled coil domain. The PX domain of IRAS binds to phosphatidylinositol-3-phosphate in membranes. Together with the coiled coil domain, it is essential for the localization of IRAS to endosomes. IRAS has been shown to interact with integrin and inhibit cell migration. Its interaction with alpha5 integrin causes a redistribution of the receptor from the cell surface to endosomal structures, suggesting that IRAS may function as a sorting nexin (SNX) which regulates the endosomal trafficking of integrin. SNXs make up the largest group a

>cd06880 PX_SNX22 The phosphoinositide binding Phox Homology domain of Sorting Nexin 22

Probab=99.87  E-value=9.3e-22  Score=178.46  Aligned_cols=105  Identities=27%  Similarity=0.424  Sum_probs=92.1

Q ss_pred             EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHH
Q 004913           48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRAL  127 (724)
Q Consensus        48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eF  127 (724)
                      ++|+||++..+.+. .+++|++|.|.|...     ...|.|.||||||.+||..|++.|+   +|+||+|++ ++.+++|
T Consensus         1 ~~V~Ip~~~~~~~~-~~~~y~~Y~I~v~~~-----~~~~~v~RRYseF~~Lh~~L~~~~~---~p~~P~K~~-~~~~~~~   70 (110)
T cd06880           1 IEVSIPSYRLEVDE-SEKPYTVFTIEVLVN-----GRRHTVEKRYSEFHALHKKLKKSIK---TPDFPPKRV-RNWNPKV   70 (110)
T ss_pred             CEEEeCcEEEeeCC-CCCCeEEEEEEEEEC-----CeEEEEEccHHHHHHHHHHHHHHCC---CCCCCCCCc-cCCCHHH
Confidence            37999999987654 467899999999643     2499999999999999999999997   799999987 4567899


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcchhh
Q 004913          128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAA  164 (724)
Q Consensus       128 LEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa~a  164 (724)
                      |++||.+||.||+.|+.+|.  .+..|.+||+++.++
T Consensus        71 ie~Rr~~Le~yL~~ll~~~~--~s~~l~~FL~~~~~~  105 (110)
T cd06880          71 LEQRRQGLEAYLQGLLKINE--LPKQLLDFLGVRHFP  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHcCcc--ccHHHHHHhCCCCCC
Confidence            99999999999999999998  699999999998653

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known.

>cd06866 PX_SNX8_Mvp1p_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p

Probab=99.86  E-value=1.5e-21  Score=175.94  Aligned_cols=90  Identities=29%  Similarity=0.388  Sum_probs=84.1

Q ss_pred             CCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHh
Q 004913           64 SDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLL  143 (724)
Q Consensus        64 sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eFLEERR~gLEkYLqrLL  143 (724)
                      ...|++|.|.+.  .     ..|.|.||||||.+||..|++.||...+|+||||+++++++++||++||.+||.||+.|+
T Consensus        15 ~~~y~~Y~i~~~--~-----~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~~~~~~~~ie~Rr~~Le~fL~~l~   87 (105)
T cd06866          15 FLKHVEYEVSSK--R-----FKSTVYRRYSDFVWLHEYLLKRYPYRMVPALPPKRIGGSADREFLEARRRGLSRFLNLVA   87 (105)
T ss_pred             ccCCEEEEEEEe--c-----CCEEEEEEhHHHHHHHHHHHHHCCCCcCCCCCCCccccCCCHHHHHHHHHHHHHHHHHHh
Confidence            348999999984  2     489999999999999999999999999999999999998899999999999999999999


Q ss_pred             cccCCCCCHHHhhccCc
Q 004913          144 SDIDLSRSVSVASFLEL  160 (724)
Q Consensus       144 shP~Ls~S~~L~sFLEl  160 (724)
                      .||.+++|+.|+.||..
T Consensus        88 ~~p~l~~s~~l~~FL~~  104 (105)
T cd06866          88 RHPVLSEDELVRTFLTE  104 (105)
T ss_pred             cChhhccChHHHhhcCC
Confidence            99999999999999974

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles.

>cd06885 PX_SNX17_31 The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31

Probab=99.86  E-value=1.8e-21  Score=175.13  Aligned_cols=100  Identities=31%  Similarity=0.480  Sum_probs=90.0

Q ss_pred             EEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHH
Q 004913           50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLE  129 (724)
Q Consensus        50 VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eFLE  129 (724)
                      |+||++....+. ++++||+|.|.|.        ..|.+.||||||.+||..|.+.||...+|+||||++++ ++++|||
T Consensus         2 v~I~~~~~~~~~-~~~~y~~Y~I~v~--------~~~~~~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~~-~~~~~ie   71 (104)
T cd06885           2 FSIPDTQELSDE-GGSTYVAYNIHIN--------GVLHCSVRYSQLHGLNEQLKKEFGNRKLPPFPPKKLLP-LTPAQLE   71 (104)
T ss_pred             CccCCcceeccC-CCCcEEEEEEEEC--------CcEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCcccc-CCHHHHH
Confidence            789998875553 5689999999982        36889999999999999999999988899999999885 5569999


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCHHHhhccC
Q 004913          130 ERRCSLEEWMTKLLSDIDLSRSVSVASFLE  159 (724)
Q Consensus       130 ERR~gLEkYLqrLLshP~Ls~S~~L~sFLE  159 (724)
                      +||.+||.||+.|+.||.++.|+.|++||.
T Consensus        72 ~Rr~~Le~yL~~l~~~~~l~~s~~~~~FL~  101 (104)
T cd06885          72 ERRLQLEKYLQAVVQDPRIANSDIFNSFLL  101 (104)
T ss_pred             HHHHHHHHHHHHHhcChhhccCHHHHHHHH
Confidence            999999999999999999999999999995

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Members of this subfamily include sorting nexin 17 (SNX17), SNX31, and similar proteins. They contain an N-terminal PX domain followed by a truncated FERM (4.1, ezrin, radixin, and moesin) domain and a unique C-terminal region. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX17 is known to regulate the trafficking and processing of a number of proteins. It binds some me

>cd07288 PX_SNX15 The phosphoinositide binding Phox Homology domain of Sorting Nexin 15

Probab=99.85  E-value=2.8e-21  Score=178.18  Aligned_cols=97  Identities=20%  Similarity=0.236  Sum_probs=83.7

Q ss_pred             CCCeEEEEEEEeee--cCCCCCcceEEEccchhHHHHHHHHHHHCCCC-----CCCCCCCCcccCCCCHHHHHHHHHHHH
Q 004913           64 SDPVVFYRVQVGLQ--SPEGITTTRGVLRRFNNFLKLFTDLKKAFPKK-----NIPPAPPKGLLRMKSRALLEERRCSLE  136 (724)
Q Consensus        64 sk~yVvY~IqV~iq--spegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~-----~LPpLPPKk~fg~~s~eFLEERR~gLE  136 (724)
                      +++|++|.|.+.+.  .+......|.|+||||||.+||..|...+++.     .+||+|+|.++++++++|||+||.+||
T Consensus        14 ~~gyt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~P~K~~~g~f~~~fIeeRR~~Le   93 (118)
T cd07288          14 PKGYTEYKVTAQFISKKQPEDVKEVVVWKRYSDLKKLHGELAYTHRNLFRRQEEFPPFPRAQVFGRFEAAVIEERRNAAE   93 (118)
T ss_pred             CCCcEEEEEEEEecCCCCCccceEEEEECCchHHHHHHHHHHHhcccccccCCccCCCCCceeeccCCHHHHHHHHHHHH
Confidence            35699999997532  22222469999999999999999999877543     489999999999999999999999999


Q ss_pred             HHHHHHhcccCCCCCHHHhhccCc
Q 004913          137 EWMTKLLSDIDLSRSVSVASFLEL  160 (724)
Q Consensus       137 kYLqrLLshP~Ls~S~~L~sFLEl  160 (724)
                      +||++|++||.|++|++|++||+-
T Consensus        94 ~fL~~i~~~p~l~~s~~~~~FL~~  117 (118)
T cd07288          94 AMLLFTVNIPALYNSPQLKEFFRD  117 (118)
T ss_pred             HHHHHHhCChhhcCChHHHHHHhc
Confidence            999999999999999999999963

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX15 contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. It plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of t

>cd07287 PX_RPK118_like The phosphoinositide binding Phox Homology domain of RPK118-like proteins

Probab=99.85  E-value=4.6e-21  Score=176.98  Aligned_cols=97  Identities=21%  Similarity=0.266  Sum_probs=83.0

Q ss_pred             CCCeEEEEEEEeeecCC--CCCcceEEEccchhHHHHHHHHHHHCCC-----CCCCCCCCCcccCCCCHHHHHHHHHHHH
Q 004913           64 SDPVVFYRVQVGLQSPE--GITTTRGVLRRFNNFLKLFTDLKKAFPK-----KNIPPAPPKGLLRMKSRALLEERRCSLE  136 (724)
Q Consensus        64 sk~yVvY~IqV~iqspe--gi~~~w~V~RRYSDF~~Lh~~Lkk~fP~-----~~LPpLPPKk~fg~~s~eFLEERR~gLE  136 (724)
                      +++|++|.|.+.+....  .....|.|.||||||.+||..|...||.     ..+||+|+|+++++++++|||+||.+||
T Consensus        14 ~~gyt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~p~k~~~g~~d~~fIe~RR~~Le   93 (118)
T cd07287          14 PKGYTVYKVTARIVSRKNPEDVQEIVVWKRYSDFKKLHKDLWQIHKNLCRQSELFPPFAKAKVFGRFDESVIEERRQCAE   93 (118)
T ss_pred             CCCeEEEEEEEEecCCCCcccceeEEEeCCchHHHHHHHHHHHhccccccCCcccCCCCCceeecCCCHHHHHHHHHHHH
Confidence            35699999988543211  1125899999999999999999998873     3579999999999999999999999999


Q ss_pred             HHHHHHhcccCCCCCHHHhhccCc
Q 004913          137 EWMTKLLSDIDLSRSVSVASFLEL  160 (724)
Q Consensus       137 kYLqrLLshP~Ls~S~~L~sFLEl  160 (724)
                      .||++|++||.|++|++|++||.-
T Consensus        94 ~fL~~i~~~p~l~~s~~~~~Fl~~  117 (118)
T cd07287          94 DLLQFSANIPALYNSSQLEDFFKG  117 (118)
T ss_pred             HHHHHHhcCccccCChHHHHHhcC
Confidence            999999999999999999999963

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to human RPK118, which contains an N-terminal PX domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. It also binds the antioxidant peroxiredoxin-3 (PRDX3) and may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Members of this subfamily also show similarity to sorting nexin 15 (SNX15), which contains PX and MIT domains but does not contain a kinase doma

>cd07277 PX_RUN The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains

Probab=99.85  E-value=6.3e-21  Score=175.97  Aligned_cols=107  Identities=28%  Similarity=0.406  Sum_probs=95.1

Q ss_pred             EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHH
Q 004913           49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALL  128 (724)
Q Consensus        49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eFL  128 (724)
                      .|+||++...++  +++.|++|.|.|.+.     ...|.|.||||||.+||.+|++.||....|++|||+++++.+++||
T Consensus         2 ~v~IPs~~~~g~--~~~~y~vY~I~v~~~-----~~~w~V~RRYseF~~L~~~L~~~~~~~~~~~~P~Kk~~g~~~~~~i   74 (118)
T cd07277           2 NVWIPSVFLRGK--GSDAHHVYQVYIRIR-----DDEWNVYRRYSEFYELHKKLKKKFPVVRSFDFPPKKAIGNKDAKFV   74 (118)
T ss_pred             EEEcCcEEEecC--CCCCEEEEEEEEEEC-----CCEEEEEecHHHHHHHHHHHHHHCCCCCCCCCCCCCccCCCCHHHH
Confidence            689999997655  478999999999654     3699999999999999999999999887899999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCHHHhhccCcchh
Q 004913          129 EERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAA  163 (724)
Q Consensus       129 EERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa~  163 (724)
                      |+||.+||.||+.|+.| .+..++.|..||+-.+.
T Consensus        75 e~Rr~~Le~yL~~ll~~-~~~~~~~~~~~~~~~~~  108 (118)
T cd07277          75 EERRKRLQVYLRRVVNT-LIQTSPELTACPSKETL  108 (118)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHhCchhhcCCCHHHH
Confidence            99999999999999998 67778889999976654

The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized proteins containing an N-terminal RUN domain and a C-terminal PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. The RUN domain is found in GTPases in the Rap and Rab families and may play a role in Ras-like signaling pathways.

>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p

Probab=99.82  E-value=9.3e-20  Score=173.20  Aligned_cols=119  Identities=21%  Similarity=0.280  Sum_probs=101.2

Q ss_pred             CCCCCCCCceEEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcce-EEEccchhHHHHHHHHHHHCCCCCCCCCCC
Q 004913           38 WPHDPRTGWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTR-GVLRRFNNFLKLFTDLKKAFPKKNIPPAPP  116 (724)
Q Consensus        38 wphd~rtGwSy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w-~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPP  116 (724)
                      -|........+.|.|.....++     +.|++|.|.+.+..|.+....+ .|.||||||+|||+.|...+|++.+||+|+
T Consensus        20 ~~~~~~~~~~l~i~Vtd~ek~G-----~~~~~~~~~~~Tnlp~Fr~~~~~~VrRRysdF~~L~~~L~~~~~~~iVPplP~   94 (140)
T cd06891          20 EPERKKPKYFLRVRVTGIERNK-----SKDPIIRFDVTTNLPTFRSSTYKDVRRTYEEFQKLFKYLNGANPETFVPALPL   94 (140)
T ss_pred             CccccCCCceEEEEEeCceecC-----CCCeEEEEEEeeCCcccCCCCCCceeeeHHHHHHHHHHHHHHCCCcEeCCCCC
Confidence            3444555666788888877643     3577888888777787766666 799999999999999999999999999999


Q ss_pred             Ccc-cCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcc
Q 004913          117 KGL-LRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE  161 (724)
Q Consensus       117 Kk~-fg~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElE  161 (724)
                      |.+ ++.++.+|+++||.+||.||++|+.||.|.+++.|+.||+.+
T Consensus        95 k~~~~~~~~~E~~~~rr~~LqrfL~RV~~hP~L~~d~~l~~FLEsd  140 (140)
T cd06891          95 PSTSYGSNNEEDARKLKANLQRWFNRVCSDPILIRDEELRFFIESD  140 (140)
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHHHHHhCChhhccCHHHHHHhccC
Confidence            985 477788999999999999999999999999999999999864

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur

>cd06871 PX_MONaKA The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase

Probab=99.82  E-value=8.1e-20  Score=168.43  Aligned_cols=104  Identities=23%  Similarity=0.323  Sum_probs=86.4

Q ss_pred             EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHH
Q 004913           49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALL  128 (724)
Q Consensus        49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eFL  128 (724)
                      .+.|+...      +.++||+|.|.|..  +......|.|.||||||.+||+.|+...  . .+|+|||+++++.+++||
T Consensus         9 ~~~i~~~~------~~~~~t~Y~I~v~~--~~~~~~~w~V~RRYsdF~~Lh~~L~~~~--~-~~plP~K~~~g~~~~~~i   77 (120)
T cd06871           9 TCVIEASQ------NIQSHTEYIIRVQR--GPSPENSWQVIRRYNDFDLLNASLQISG--I-SLPLPPKKLIGNMDREFI   77 (120)
T ss_pred             EEEEecCC------CccCcEEEEEEEEE--CCcCCceeEEEeeHHHHHHHHHHHHHcC--C-CCCCCCccccCCCCHHHH
Confidence            45555544      35679999999953  2222469999999999999999998642  2 346999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCHHHhhccCcchh
Q 004913          129 EERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAA  163 (724)
Q Consensus       129 EERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa~  163 (724)
                      ++||.+||.||+.|++||.+++|+.|..||+...+
T Consensus        78 e~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~~~  112 (120)
T cd06871          78 AERQQGLQNYLNVILMNPILASCLPVKKFLDPNNY  112 (120)
T ss_pred             HHHHHHHHHHHHHHHcChhhccCHHHHHhcCcccC
Confidence            99999999999999999999999999999986644

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. MONaKA (Modulator of Na,K-ATPase) binds the plasma membrane ion transporter, Na,K-ATPase, and modulates its enzymatic and ion pump activities. It modulates brain Na,K-ATPase and may be involved in regulating electrical excitability and synaptic transmission. MONaKA contains an N-terminal PX domain and a C-terminal catalytic kinase domain. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.

>cd06093 PX_domain The Phox Homology domain, a phosphoinositide binding module

Probab=99.80  E-value=3.9e-19  Score=152.52  Aligned_cols=105  Identities=35%  Similarity=0.590  Sum_probs=93.7

Q ss_pred             EEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHH
Q 004913           50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLE  129 (724)
Q Consensus        50 VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eFLE  129 (724)
                      |.|+.+.....  +++.|++|.|.|....    ...|.|.||||||.+||..|+..+|...+|+||+|.+++..+.++++
T Consensus         2 i~I~~~~~~~~--~~~~~~~Y~i~v~~~~----~~~~~v~rrysdF~~L~~~L~~~~~~~~~p~lP~k~~~~~~~~~~~~   75 (106)
T cd06093           2 VSIPDYEKVKD--GGKKYVVYIIEVTTQG----GEEWTVYRRYSDFEELHEKLKKKFPGVILPPLPPKKLFGNLDPEFIE   75 (106)
T ss_pred             EEeCCceEEcC--CCCCEEEEEEEEEECC----CCeEEEEeehHHHHHHHHHHHHHCCCCccCCCCCCcccccCCHHHHH
Confidence            67888876543  4678999999996433    36899999999999999999999998899999999988877889999


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCHHHhhccCc
Q 004913          130 ERRCSLEEWMTKLLSDIDLSRSVSVASFLEL  160 (724)
Q Consensus       130 ERR~gLEkYLqrLLshP~Ls~S~~L~sFLEl  160 (724)
                      +|+.+|+.||+.|+.+|.+.+++.|..||+.
T Consensus        76 ~R~~~L~~yl~~l~~~~~~~~~~~~~~Fl~~  106 (106)
T cd06093          76 ERRKQLEQYLQSLLNHPELRNSEELKEFLEL  106 (106)
T ss_pred             HHHHHHHHHHHHHhcCcccccChHHHHHhCC
Confidence            9999999999999999999999999999963

The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting.

>cd06882 PX_p40phox The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase

Probab=99.80  E-value=2.8e-19  Score=165.75  Aligned_cols=106  Identities=22%  Similarity=0.253  Sum_probs=90.9

Q ss_pred             EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC--------CCCCCCCCCcc
Q 004913           48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK--------KNIPPAPPKGL  119 (724)
Q Consensus        48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~--------~~LPpLPPKk~  119 (724)
                      ..++|+.....   .+...|++|.|.|....    +..|.|+||||||.+||.+|++.||.        ..+|+||+|++
T Consensus         4 i~~~I~~~~~~---~~~~~y~vY~I~v~~~~----~~~~~V~RRYseF~~L~~~L~~~fp~~~~~~~~~~~lP~lP~k~~   76 (123)
T cd06882           4 VSATIADIEEK---RGFTNYYVFVIEVKTKG----GSKYLIYRRYRQFFALQSKLEERFGPEAGSSAYDCTLPTLPGKIY   76 (123)
T ss_pred             EEEEEeeeeEE---eCCCCEEEEEEEEEEcC----CCEEEEEEEHHHHHHHHHHHHHhCCcccccCCCCCccCCCCCCee
Confidence            46777776532   35688999999996533    25899999999999999999999995        46899999998


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHhcccC-CCCCHHHhhccCcc
Q 004913          120 LRMKSRALLEERRCSLEEWMTKLLSDID-LSRSVSVASFLELE  161 (724)
Q Consensus       120 fg~~s~eFLEERR~gLEkYLqrLLshP~-Ls~S~~L~sFLElE  161 (724)
                      +++.+ +|+++||.+|+.||+.|++.|. +++|+.|++||...
T Consensus        77 ~~~~~-~~~e~Rr~~Le~yl~~Ll~~p~~i~~~~~v~~Fl~~~  118 (123)
T cd06882          77 VGRKA-EIAERRIPLLNRYMKELLSLPVWVLMDEDVRLFFYQT  118 (123)
T ss_pred             cCccH-HHHHHHHHHHHHHHHHHHcCCHHhcCCHHHHHHhCCC
Confidence            88765 9999999999999999999985 99999999999765

The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p40phox contains an N-terminal PX domain, a central SH3 domain that binds p47phox, and a C-terminal PB1 domain that interacts with p67phox. It is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. The PX domain is a phospholipid-binding module involved in the membrane targeting of proteins. The p40phox

>cd06869 PX_UP2_fungi The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins

Probab=99.80  E-value=2.4e-19  Score=165.79  Aligned_cols=91  Identities=33%  Similarity=0.461  Sum_probs=81.9

Q ss_pred             CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Q 004913           63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKL  142 (724)
Q Consensus        63 ~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eFLEERR~gLEkYLqrL  142 (724)
                      +++.|++|.|+|.+....  ...|.|.||||||.+||..|++.||...+|+||+|++      .|+|+||.+||.||+.|
T Consensus        29 ~~~~~~~Y~I~V~~~~~~--~~~~~V~RRYsdF~~L~~~L~~~fp~~~lP~lP~K~~------~~~E~Rr~~Le~yL~~L  100 (119)
T cd06869          29 RSKHHYEFIIRVRREGEE--YRTIYVARRYSDFKKLHHDLKKEFPGKKLPKLPHKDK------LPREKLRLSLRQYLRSL  100 (119)
T ss_pred             CCCceEEEEEEEEECCCC--CCceEEEeeHHHHHHHHHHHHHHCcCCCCCCCcCCch------hHHHHHHHHHHHHHHHH
Confidence            467899999999765432  4699999999999999999999999999999999975      68899999999999999


Q ss_pred             hcccCCCCCHHHhhccCcc
Q 004913          143 LSDIDLSRSVSVASFLELE  161 (724)
Q Consensus       143 LshP~Ls~S~~L~sFLElE  161 (724)
                      +++|.|++|+.|+.||..+
T Consensus       101 l~~p~l~~s~~~~~FL~~~  119 (119)
T cd06869         101 LKDPEVAHSSILQEFLTSD  119 (119)
T ss_pred             hcChhhhcChHHHHhhCCC
Confidence            9999999999999999753

The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.

>cd06883 PX_PI3K_C2 The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases

Probab=99.80  E-value=3.7e-19  Score=161.44  Aligned_cols=105  Identities=22%  Similarity=0.374  Sum_probs=89.4

Q ss_pred             EEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCC-CCHHHH
Q 004913           50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRM-KSRALL  128 (724)
Q Consensus        50 VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~-~s~eFL  128 (724)
                      |+|.++...-   ....|++|.|.|.....   +..|.|.||||||.+||.+|++.||...+|+||+|+++++ ++++++
T Consensus         2 ~~i~~~~~~~---~~~~~~vY~I~V~~~~~---~~~~~V~RRYseF~~Lh~~L~~~fp~~~lp~lP~k~~~~~~~~~~~~   75 (109)
T cd06883           2 VSVFGFQKRY---SPEKYYIYVVKVTRENQ---TEPSFVFRTFEEFQELHNKLSLLFPSLKLPSFPARVVLGRSHIKQVA   75 (109)
T ss_pred             cEEEEEEEEe---cCCceEEEEEEEEECCC---CCeEEEEecHHHHHHHHHHHHHHCCCCcCCCCCCCcccCccchhHHH
Confidence            6777776421   23569999999965432   3579999999999999999999999999999999998875 457999


Q ss_pred             HHHHHHHHHHHHHHhccc-CCCCCHHHhhccCc
Q 004913          129 EERRCSLEEWMTKLLSDI-DLSRSVSVASFLEL  160 (724)
Q Consensus       129 EERR~gLEkYLqrLLshP-~Ls~S~~L~sFLEl  160 (724)
                      ++|+.+|+.||+.|++.| .+++|+.|++||..
T Consensus        76 e~R~~~Le~YL~~Ll~~~~~i~~s~~v~~F~~~  108 (109)
T cd06883          76 ERRKIELNSYLKSLFNASPEVAESDLVYTFFHP  108 (109)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHhcCHHHHHhcCC
Confidence            999999999999999985 99999999999964

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They are also involved in the regulation of clathrin-mediated membrane trafficking as well as ATP-dependent priming of neurosecretory granule exocytosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and d

>smart00312 PX PhoX homologous domain, present in p47phox and p40phox

Probab=99.80  E-value=3.3e-19  Score=155.16  Aligned_cols=93  Identities=35%  Similarity=0.621  Sum_probs=81.3

Q ss_pred             CCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC---CCCHHHHHHHHHHHHHHHH
Q 004913           64 SDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR---MKSRALLEERRCSLEEWMT  140 (724)
Q Consensus        64 sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg---~~s~eFLEERR~gLEkYLq  140 (724)
                      .+.+++|.|.|.+..+   ...|.|.||||||.+||..|+..||...+|+||+|.+++   ..+++++++|+.+||.||+
T Consensus         9 ~~~~~~~~~~v~~~~~---~~~~~v~RRysdF~~L~~~L~~~~~~~~lP~lP~k~~~~~~~~~~~~~i~~R~~~L~~yL~   85 (105)
T smart00312        9 DGKHYYYVIEIETKTG---LEEWTVSRRYSDFLELHSKLKKHFPRRILPPLPPKKLFGRLNNFSEEFIEKRRRGLERYLQ   85 (105)
T ss_pred             CCceEEEEEEEEECCC---CceEEEEEEHHHHHHHHHHHHHHCcCCCCCCCCCchhcccCCcCCHHHHHHHHHHHHHHHH
Confidence            3456666666655543   369999999999999999999999988899999998765   4679999999999999999


Q ss_pred             HHhcccCCCC-CHHHhhccC
Q 004913          141 KLLSDIDLSR-SVSVASFLE  159 (724)
Q Consensus       141 rLLshP~Ls~-S~~L~sFLE  159 (724)
                      .|+++|.+++ |+.|.+||+
T Consensus        86 ~l~~~~~~~~~s~~~~~Fl~  105 (105)
T smart00312       86 SLLNHPELINESEVVLSFLE  105 (105)
T ss_pred             HHHcCHhhhccChHHHHhcC
Confidence            9999999999 999999995

Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform.

>cd06874 PX_KIF16B_SNX23 The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23

Probab=99.78  E-value=1.2e-18  Score=162.92  Aligned_cols=99  Identities=27%  Similarity=0.443  Sum_probs=86.5

Q ss_pred             EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHH
Q 004913           49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALL  128 (724)
Q Consensus        49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eFL  128 (724)
                      .|+||+|...++  +.+.|++|.|.|...     ...|.|.||||||.+||..|+..||....|++|+|+++++.+++||
T Consensus         2 ~i~Ip~~~~~~~--~~~~y~vY~I~v~~~-----~~~w~V~RRYseF~~Lh~~L~~~~p~~~~~~fP~Kk~~g~~~~~~i   74 (127)
T cd06874           2 KITIPRYVLRGQ--GKDEHFEFEVKITVL-----DETWTVFRRYSRFRELHKTMKLKYPEVAALEFPPKKLFGNKSERVA   74 (127)
T ss_pred             EEEECCeEEecC--CCCcEEEEEEEEEEC-----CcEEEEEeeHHHHHHHHHHHHHHcCCCccCCCCCceecCCCCHHHH
Confidence            689999987543  577899999999542     2479999999999999999999999887889999999999899999


Q ss_pred             HHHHHHHHHHHHHHhcc-cCCCCCHHH
Q 004913          129 EERRCSLEEWMTKLLSD-IDLSRSVSV  154 (724)
Q Consensus       129 EERR~gLEkYLqrLLsh-P~Ls~S~~L  154 (724)
                      |+||.+||.||+.|++. +.+..|+.+
T Consensus        75 e~Rr~~Le~yL~~Ll~~~~~~~~~~~~  101 (127)
T cd06874          75 KERRRQLETYLRNFFSVCLKLPACPLY  101 (127)
T ss_pred             HHHHHHHHHHHHHHHHhchhccCCccc
Confidence            99999999999999974 677777754

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. KIF16B, also called sorting nexin 23 (SNX23), is a family-3 kinesin which harbors an N-terminal kinesin motor domain containing ATP and microtubule binding sites, a ForkHead Associated (FHA) domain, and a C-terminal PX domain. The PX domain of KIF16B binds to phosphatidylinositol-3-phosphate (PI3P) in early endosomes and plays a role in the transport of early endosomes to the plus end of microtubules. By regulating early endosome plus end motility, KIF16B modulates the balance between recycling and degradation of receptors. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endoso

>KOG2527 consensus Sorting nexin SNX11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=1.1e-18  Score=164.26  Aligned_cols=115  Identities=23%  Similarity=0.280  Sum_probs=99.2

Q ss_pred             EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCC-CCHH
Q 004913           48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRM-KSRA  126 (724)
Q Consensus        48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~-~s~e  126 (724)
                      ..|.|+...+.  ..+...||-|.|.+.+..|......-+|.||||||.|||..|....+.+.+|+||+|.++.+ ...+
T Consensus        18 LeI~V~nPrt~--~~~~~~ytdYEI~~rTN~p~F~~k~S~VRRRYsdFewlr~~Ler~s~kvvvP~LPgK~~~~~~~fre   95 (144)
T KOG2527|consen   18 LEIDVINPRTH--GDGKNRYTDYEIRCRTNSPSFKKKESCVRRRYSDFEWLRKRLERESGKVVVPELPGKALFRQLPFRE   95 (144)
T ss_pred             EEEEeeCCccc--ccccccceeEEEEEecCchhhhhhhHHHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHhcCchHH
Confidence            46666666652  23456799999999988887777888999999999999999999988889999999986654 3469


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcchhh
Q 004913          127 LLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAA  164 (724)
Q Consensus       127 FLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa~a  164 (724)
                      |||+||+|||.||++++.||.+.++..|..||..+...
T Consensus        96 ~IEeRrqgLe~fl~kVaghpL~q~~~~Lh~Flq~~~~~  133 (144)
T KOG2527|consen   96 FIEERRQGLEVFLRKVAGHPLLQNERCLHLFLQSELID  133 (144)
T ss_pred             HHHHHHHHHHHHHHHHhCchhhhccHHHHHHHHhhhhc
Confidence            99999999999999999999999999999999887654

>cd07291 PX_SNX5 The phosphoinositide binding Phox Homology domain of Sorting Nexin 5

Probab=99.75  E-value=2.7e-18  Score=162.97  Aligned_cols=108  Identities=24%  Similarity=0.326  Sum_probs=89.2

Q ss_pred             EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHH--HCCCCCCCCCCCCcccC----
Q 004913           48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKK--AFPKKNIPPAPPKGLLR----  121 (724)
Q Consensus        48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk--~fP~~~LPpLPPKk~fg----  121 (724)
                      +.|.|......      +.+|.|.|+..+..+.+....+.|.||||||.|||..|..  .||++.+||+|+|..++    
T Consensus         3 l~i~vsD~~~~------~d~V~Y~V~TkTtl~~F~~~ef~V~RRysDFlwL~~~L~e~~~~~G~IIPPlPeK~~~~~~~~   76 (141)
T cd07291           3 LQIDIPDALSE------RDKVKFTVHTKTTLPSFQSPDFSVTRQHEDFIWLHDALIETEDYAGLIIPPAPPKPDFDGPRE   76 (141)
T ss_pred             cEEEecccccc------CCCEEEEEEeCCCCccccCCccEEEeccHHHHHHHHHHhccccCCeEEECCCCCCccccchHH
Confidence            45666666532      3469999999877787777899999999999999999996  67999999999998652    


Q ss_pred             -----------CCCHHHHHHH--------------HHHHHHHHHHHhcccCCCCCHHHhhccCcc
Q 004913          122 -----------MKSRALLEER--------------RCSLEEWMTKLLSDIDLSRSVSVASFLELE  161 (724)
Q Consensus       122 -----------~~s~eFLEER--------------R~gLEkYLqrLLshP~Ls~S~~L~sFLElE  161 (724)
                                 +...+|++.|              +++||.||++|++||.|.+++.|+.||+.+
T Consensus        77 k~~kl~~~~~~~~~eef~~~r~~~~~~~~~~~kk~~a~lE~fL~Ria~HP~l~~d~~f~~FLe~~  141 (141)
T cd07291          77 KMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVQVHEVFLQRLSSHPSLSKDRNFHIFLEYD  141 (141)
T ss_pred             hhhhcccCcccccHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCeeccCcchhhhccCC
Confidence                       1235777755              467999999999999999999999999853

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting

>cd06892 PX_SNX5_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 5 and 6

Probab=99.74  E-value=4.8e-18  Score=161.70  Aligned_cols=108  Identities=25%  Similarity=0.315  Sum_probs=92.9

Q ss_pred             EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHH--CCCCCCCCCCCCccc-----
Q 004913           48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKA--FPKKNIPPAPPKGLL-----  120 (724)
Q Consensus        48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~--fP~~~LPpLPPKk~f-----  120 (724)
                      ..|.|+....      -..+|.|.|+..+..|......+.|.||||||.|||..|...  |+++.+||+|+|..+     
T Consensus         3 ~~~~i~da~~------~~~~V~Y~V~TkT~l~~f~~~e~sV~RR~sDF~wL~~~L~~~~~~~g~IVPP~P~K~~~~~~~~   76 (141)
T cd06892           3 LQVDISDALS------ERDKVKFTVHTKTTLPTFQKPEFSVTRQHEEFVWLHDTLVENEDYAGLIIPPAPPKPDFDASRE   76 (141)
T ss_pred             eeeecccccc------cCCeEEEEEEeccCCccccCCeeEEEeccHHHHHHHHHHhhccCCCeEEECCCCCCcccccccc
Confidence            4677776653      235899999998888887788999999999999999999976  899999999999754     


Q ss_pred             ---------CCCCHHHHHHHHHHH---------------HHHHHHHhcccCCCCCHHHhhccCcc
Q 004913          121 ---------RMKSRALLEERRCSL---------------EEWMTKLLSDIDLSRSVSVASFLELE  161 (724)
Q Consensus       121 ---------g~~s~eFLEERR~gL---------------EkYLqrLLshP~Ls~S~~L~sFLElE  161 (724)
                               +....+|+++|+.+|               |.||++|+.||.|.++..|+.||+.+
T Consensus        77 k~~klg~~d~~~~~ef~~~r~~~Le~~y~~~~~k~v~~~e~FL~RiA~HP~L~~~~~l~~FLe~~  141 (141)
T cd06892          77 KLQKLGEGEGSMTKEEFEKMKQELEAEYLAIFKKTVAMHEVFLRRLASHPVLRNDANFRVFLEYE  141 (141)
T ss_pred             eeeecccCccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCeeecCHhHHhhhcCC
Confidence                     135689999999999               58999999999999999999999853

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Members of this subfamily include SNX5, SNX6, and similar proteins. They contain a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to other sorting nexins including SNX1-2. The PX-BAR structural unit helps determine the specific membrane-targeting of som

>PF00787 PX: PX domain; InterPro: IPR001683 The PX (phox) domain [] occurs in a variety of eukaryotic proteins and have been implicated in highly diverse functions such as cell signalling, vesicular trafficking, protein sorting and lipid modification [, , ]

Probab=99.73  E-value=1.5e-17  Score=144.14  Aligned_cols=107  Identities=32%  Similarity=0.527  Sum_probs=91.4

Q ss_pred             eEEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCC---C
Q 004913           47 SYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRM---K  123 (724)
Q Consensus        47 Sy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~---~  123 (724)
                      ...|.|.+....    +.+..++|.|+|.....   ...|.|.|||+||.+||..|+..+|...+|++|+|.+++.   .
T Consensus         3 ~~~v~v~~~~~~----~~~~~~~~~~~i~~~~~---~~~~~v~rry~dF~~L~~~L~~~~~~~~~p~~P~~~~~~~~~~~   75 (113)
T PF00787_consen    3 IIQVSVVDPETS----GNKKKTYYIYQIELQDG---KESWSVYRRYSDFYELHRKLKKRFPSRKLPPFPPKQWFSNSRNL   75 (113)
T ss_dssp             EEEEEEEEEEEE----SSSSEEEEEEEEEETTS---SSEEEEEEEHHHHHHHHHHHHHHHTTSGSTSSSTSSSSSSSSTT
T ss_pred             EEEEEEcCCEEE----cCCCEEEEEEEEEECCC---CEEEEEEEEHHHHHHHHHHHhhhhcccccccCCccccccccccc
Confidence            357777777653    23456777777754443   4799999999999999999999999999999999987765   7


Q ss_pred             CHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCc
Q 004913          124 SRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL  160 (724)
Q Consensus       124 s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLEl  160 (724)
                      +++++++|+.+|+.||+.|+++|.+.+|+.|..||+.
T Consensus        76 ~~~~~~~R~~~L~~yL~~l~~~~~~~~s~~l~~FL~~  112 (113)
T PF00787_consen   76 DPEFIEERRQALEKYLQSLLSHPELRSSEALKEFLES  112 (113)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHTSCHHHHSHHHHHHHCT
T ss_pred             cHHHHHHHHHHHHHHHHHHHcChhhhCchHHHHhcCC
Confidence            8999999999999999999999999999999999985

PX domains are important phosphoinositide-binding modules that have varying lipid-binding specificities []. The PX domain is approximately 120 residues long [], and folds into a three-stranded beta-sheet followed by three -helices and a proline-rich region that immediately preceeds a membrane-interaction loop and spans approximately eight hydrophobic and polar residues. The PX domain of p47phox binds to the SH3 domain in the same protein []. Phosphorylation of p47(phox), a cytoplasmic activator of the microbicidal phagocyte oxidase (phox), elicits interaction of p47(phox) with phoinositides. The protein phosphorylation-driven conformational change of p47(phox) enables its PX domain to bind to phosphoinositides, the interaction of which plays a crucial role in recruitment of p47(phox) from the cytoplasm to membranes and subsequent activation of the phagocyte oxidase. The lipid-binding activity of this protein is normally suppressed by intramolecular interaction of the PX domain with the C-terminal Src homology 3 (SH3) domain []. The PX domain is conserved from yeast to human. A recent multiple alignment of representative PX domain sequences can be found in [], although showing relatively little sequence conservation, their structure appears to be highly conserved. Although phosphatidylinositol-3-phosphate (PtdIns(3)P) is the primary target of PX domains, binding to phosphatidic acid, phosphatidylinositol-3,4-bisphosphate (PtdIns(3,4)P2), phosphatidylinositol-3,5-bisphosphate (PtdIns(3,5)P2), phosphatidylinositol-4,5-bisphosphate (PtdIns(4,5)P2), and phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4,5)P3) has been reported as well. The PX-domain is also a protein-protein interaction domain [].; GO: 0005515 protein binding, 0035091 phosphatidylinositol binding, 0007154 cell communication; PDB: 2DYB_A 1H6H_A 2WWE_A 1XTN_B 1XTE_A 2CZO_A 2V6V_B 2V14_A 2I4K_A 3IQ2_A ....

>cd07292 PX_SNX6 The phosphoinositide binding Phox Homology domain of Sorting Nexin 6

Probab=99.72  E-value=1.6e-17  Score=157.67  Aligned_cols=108  Identities=19%  Similarity=0.275  Sum_probs=88.8

Q ss_pred             eEEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHH--CCCCCCCCCCCCcccCC--
Q 004913           47 SYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKA--FPKKNIPPAPPKGLLRM--  122 (724)
Q Consensus        47 Sy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~--fP~~~LPpLPPKk~fg~--  122 (724)
                      +..|.|+.....      +..|.|.|+..+..|......+.|.||||||.|||..|..+  |+++.+||+|+|..++.  
T Consensus         2 ~l~v~isD~~~~------~d~V~Y~V~TkTtlp~F~~~e~sV~RRysDF~wL~~~L~e~~~~~G~IVPPlP~K~~~~~~~   75 (141)
T cd07292           2 ALQVDISDALSE------RDKVKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASR   75 (141)
T ss_pred             ceEEEccccccc------CCceEEEEEecccCcccCCCceEEEeccHhHHHHHHHHhhcccCCcEEECCCCCCccccchH
Confidence            356777776642      22499999998888877778999999999999999999965  89999999999986631  


Q ss_pred             ------------CC-HHHHH--------------HHHHHHHHHHHHHhcccCCCCCHHHhhccCc
Q 004913          123 ------------KS-RALLE--------------ERRCSLEEWMTKLLSDIDLSRSVSVASFLEL  160 (724)
Q Consensus       123 ------------~s-~eFLE--------------ERR~gLEkYLqrLLshP~Ls~S~~L~sFLEl  160 (724)
                                  .. ..|..              +|+.+||.||++|++||.|+++..|+.||+-
T Consensus        76 ~k~~klg~~~~~~~~ee~~~~~~~l~~~~~~~~kk~~a~~E~Fl~Ria~HP~l~~D~~f~~FLe~  140 (141)
T cd07292          76 EKLQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEY  140 (141)
T ss_pred             HHHHhhccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCcchhheecc
Confidence                        11 24442              7789999999999999999999999999984

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transfo

>cd06884 PX_PI3K_C2_68D The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases similar to the Drosophila PI3K_68D protein

Probab=99.71  E-value=5.4e-17  Score=148.65  Aligned_cols=104  Identities=21%  Similarity=0.414  Sum_probs=88.3

Q ss_pred             EEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCC-CCHHHH
Q 004913           50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRM-KSRALL  128 (724)
Q Consensus        50 VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~-~s~eFL  128 (724)
                      |+|-++...   .+.++|.+|.|.|...++   ...|.|+|||+||.+||.+|++.||...+|+||+|+++++ +++.+.
T Consensus         4 v~v~~~~kr---~~~~~~yvY~I~V~~~~~---~~~~~V~RrYseF~~Lh~~L~~~FP~~~lp~LP~k~~~~~~~~~~v~   77 (111)
T cd06884           4 VTVVGFQKR---YDPEKYYVYVVEVTRENQ---ASPQHVFRTYKEFLELYQKLCRKFPLAKLHPLSTGSHVGRSNIKSVA   77 (111)
T ss_pred             EEEEEEEEE---ecCCCeEEEEEEEEEcCC---CceEEEEeEHHHHHHHHHHHHHHCCCCCCCCCCCceeecCCcchHHH
Confidence            455555432   245789999999954443   3689999999999999999999999988999999987764 568999


Q ss_pred             HHHHHHHHHHHHHHhcc-cCCCCCHHHhhccC
Q 004913          129 EERRCSLEEWMTKLLSD-IDLSRSVSVASFLE  159 (724)
Q Consensus       129 EERR~gLEkYLqrLLsh-P~Ls~S~~L~sFLE  159 (724)
                      |+|+.+||.||+.|++. |.|++|+.|.+|+.
T Consensus        78 e~R~~~L~~Yl~~Ll~~~~~is~~~~v~~FF~  109 (111)
T cd06884          78 EKRKQDIQQFLNSLFKMAEEVSHSDLVYTFFH  109 (111)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHhcChHHHHhcC
Confidence            99999999999999985 89999999999985

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a

>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=4.2e-14  Score=155.84  Aligned_cols=116  Identities=25%  Similarity=0.343  Sum_probs=99.0

Q ss_pred             ceEEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC----
Q 004913           46 WSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR----  121 (724)
Q Consensus        46 wSy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg----  121 (724)
                      +..+|.++.... .-..+.+.|+.|.|.+.+..|......+.|.||||||++||..|...||++.+||+|+|....    
T Consensus       108 ~~~~i~~~~~~~-~~~~~~~~~~~y~i~t~t~~~~~~~~~~~V~RrysDF~~L~~~L~~~~p~~~iPplP~k~~~~~~~~  186 (503)
T KOG2273|consen  108 LDLSITVSDPEP-EIGDGMKTYVSYIIETKTSLPIFGSSEFSVRRRYSDFLWLRSKLLSKYPGRIIPPLPEKSIVGSKSG  186 (503)
T ss_pred             hheeeecCCCcc-ccCCCccceEEEEEEEeeccCcCCCCceeEEeehhHHHHHHHHHHHHCCCCeeCCCCchhhhhcccc
Confidence            444566665551 222367789999999988877766678999999999999999999999999999999997433    


Q ss_pred             -CCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcch
Q 004913          122 -MKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEA  162 (724)
Q Consensus       122 -~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa  162 (724)
                       .++++|+++||.+|+.||++++.||.|.+++.|+.||+.+.
T Consensus       187 ~~~s~ef~e~rr~~L~~~l~r~~~hP~l~~~~~~~~FL~~~~  228 (503)
T KOG2273|consen  187 DSFSDEFIEKRRKALERFLNRLSLHPVLSNDEDFRLFLESDS  228 (503)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHhcccc
Confidence             46789999999999999999999999999999999999884

>KOG2528 consensus Sorting nexin SNX9/SH3PX1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=9e-17  Score=173.98  Aligned_cols=126  Identities=22%  Similarity=0.313  Sum_probs=111.2

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCceEEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEc
Q 004913           11 RHDGTSPLPLGMDWSPAPRKWNGRDTVWPHDPRTGWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLR   90 (724)
Q Consensus        11 r~d~~s~lplg~dwsppp~~~~g~dtvwphd~rtGwSy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~R   90 (724)
                      .|.++.+ |.|..|.++|+++                 .|.|-+....++.+|.++|+.|.+.=+.       +...|.|
T Consensus       167 ~~~i~~~-~~g~qw~~~~~~~-----------------~c~v~~p~k~sk~kg~ks~i~y~ltpt~-------t~~~v~r  221 (490)
T KOG2528|consen  167 KVLIMVG-DRGPQWQANPSPF-----------------RCVVDDPKKESKFKGLKSYIAYQLTPTH-------TNISVSR  221 (490)
T ss_pred             cceeecC-CCCcccccCCCCe-----------------eEEecCcccccccccchheeEeeecccc-------cCcchhh
Confidence            4455566 8999999999966                 5667777777778899999999996522       2344999


Q ss_pred             cchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcc
Q 004913           91 RFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE  161 (724)
Q Consensus        91 RYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElE  161 (724)
                      ||..|.|||.+|..+||.+.+|+||.|.+.+++..+||++||.+|+.|++++|+||+|++|+.|+.||.-.
T Consensus       222 rykhfdwl~~rl~~kf~~i~vp~Lpdkq~~gr~Ee~fi~~rr~~l~~wm~~~~~hpvlsq~evf~hFl~c~  292 (490)
T KOG2528|consen  222 RYKHFDWLYERLLLKFPLIPVPPLPDKQVTGRFEEDFIEKRRKGLQWWMNHMCRHPVLSQCEVFQHFLTCP  292 (490)
T ss_pred             cccccHHHHHHHHhhcccccCCCCCccccccchhHHHHHHHHHHHHHHHHHhhcchHhhhhHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999876

>cd06895 PX_PLD The phosphoinositide binding Phox Homology domain of Phospholipase D

Probab=99.67  E-value=3.1e-16  Score=148.94  Aligned_cols=106  Identities=22%  Similarity=0.271  Sum_probs=86.1

Q ss_pred             EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCC---------------------
Q 004913           49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFP---------------------  107 (724)
Q Consensus        49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP---------------------  107 (724)
                      .|.|+++.-.........|++|.|+|..  +   ...|.|.|||+||.+||..|+..++                     
T Consensus         5 ~a~I~~~er~~~~~~~~~~~~Y~Iev~~--g---~~~W~V~RRy~~F~~Lh~~L~~~~~~l~~p~p~k~~~~~~~~~~~~   79 (140)
T cd06895           5 KARITDVERSGTTRHLLNPNLYTIELQH--G---QFTWTIKRRYKHFQELHQALKLYRALLRIPLPTRRHKEERLSLKRS   79 (140)
T ss_pred             EEEEeEEeccCCCCCCCceEEEEEEEEE--C---CEEEEEEeeHHHHHHHHHHHHHhcccccccCchHHhhhhhhccccc
Confidence            6788888643221125678999999943  2   3699999999999999999998732                     


Q ss_pred             --------CCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCc
Q 004913          108 --------KKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL  160 (724)
Q Consensus       108 --------~~~LPpLPPKk~fg~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLEl  160 (724)
                              ...+|+||.|..++ ..++++++||.+||.||+.|+.+|.+.++..+.+||+.
T Consensus        80 ~~~~~~~~~~~lP~lP~~~~~~-~~~~~ie~Rr~~Le~YL~~LL~~~~~rn~~~~~~FLeV  139 (140)
T cd06895          80 RKPEREKKNRRLPSLPALPDIL-VSEEQLDSRKKQLENYLQNLLKIPDYRNHPETLEFLEV  139 (140)
T ss_pred             cccccccccccCCCCCCccccc-cCHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHhhhcc
Confidence                    23578888777554 37899999999999999999999999999999999986

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. Members of this subfamily contain PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. Vertebrates contain two PLD isozymes, PLD1 and PLD2. PLD1 is located mainly in intracellular membr

>cd06890 PX_Bem1p The phosphoinositide binding Phox Homology domain of Bem1p

Probab=99.66  E-value=5.4e-16  Score=141.34  Aligned_cols=101  Identities=24%  Similarity=0.331  Sum_probs=87.1

Q ss_pred             EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC--------CCCCCCCCCccc
Q 004913           49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK--------KNIPPAPPKGLL  120 (724)
Q Consensus        49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~--------~~LPpLPPKk~f  120 (724)
                      .++|+++...      +.+.+|.|.|...+    +..|.|+|||+||.+||.+|...||.        ..+|+||++...
T Consensus         2 ~~~V~~~~~~------~~~y~Y~i~v~~s~----~~~~~v~RrY~dFy~Lh~~L~~~fp~eag~~~~~~~lP~lP~~~~~   71 (112)
T cd06890           2 SASVESVLLE------DNRYWYRVRATLSD----GKTRYLCRYYQDFYKLHIALLDLFPAEAGRNSSKRILPYLPGPVTD   71 (112)
T ss_pred             eEEEEEEEEE------CCEEEEEEEEEEcC----CcEEEEEEEHHHHHHHHHHHHHhCcHhhCCCCCCCcCCCCCCCccC
Confidence            5788888763      34789999997655    47999999999999999999999993        358989877544


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhccc-CCCCCHHHhhccCc
Q 004913          121 RMKSRALLEERRCSLEEWMTKLLSDI-DLSRSVSVASFLEL  160 (724)
Q Consensus       121 g~~s~eFLEERR~gLEkYLqrLLshP-~Ls~S~~L~sFLEl  160 (724)
                      . .+.+++++||.+|+.||+.|+.+| .+++|+.|+.||..
T Consensus        72 ~-~~~~~~e~R~~~L~~Yl~~Ll~~p~~i~~s~~v~~Ff~~  111 (112)
T cd06890          72 V-VNDSISLKRLNDLNEYLNELINLPAYIQTSEVVRDFFAN  111 (112)
T ss_pred             c-chhHHHHHHHHHHHHHHHHHHcCCHHhccCHHHHHHcCc
Confidence            3 567999999999999999999999 99999999999964

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of Bem1p

>cd07289 PX_PI3K_C2_alpha The phosphoinositide binding Phox Homology Domain of the Alpha Isoform of Class II Phosphoinositide 3-Kinases

Probab=99.64  E-value=1.3e-15  Score=139.79  Aligned_cols=104  Identities=21%  Similarity=0.379  Sum_probs=86.1

Q ss_pred             EEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCC-HHHH
Q 004913           50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKS-RALL  128 (724)
Q Consensus        50 VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s-~eFL  128 (724)
                      |+|+++.....+   +.|.+|.|.|...+.  ....| |+|||++|..||.+|++.||...+|+||+|.++|+.. ++..
T Consensus         2 ~~V~~f~Kr~~p---~k~yvY~i~V~~~~~--~~~~~-I~Rry~eF~~Lh~kL~~~Fp~~~lP~lP~k~~~grs~~~~va   75 (109)
T cd07289           2 VSVFTYHKRYNP---DKHYIYVVRILREGQ--IEPSF-VFRTFDEFQELHNKLSILFPLWKLPGFPNKMVLGRTHIKDVA   75 (109)
T ss_pred             cEEeeEEEEEcC---CCeEEEEEEEEECCC--ceeEE-EEeeHHHHHHHHHHHHHHCCcccCCCCCCCeeeCCCcchHHH
Confidence            688898754332   345699999965432  11255 9999999999999999999988899999998887653 7999


Q ss_pred             HHHHHHHHHHHHHHhcc-cCCCCCHHHhhccC
Q 004913          129 EERRCSLEEWMTKLLSD-IDLSRSVSVASFLE  159 (724)
Q Consensus       129 EERR~gLEkYLqrLLsh-P~Ls~S~~L~sFLE  159 (724)
                      |+|+.+|+.||+.|++- |.+++|+.|.+|+.
T Consensus        76 e~R~~~L~~Yl~~Ll~~p~~Is~~d~v~~FF~  107 (109)
T cd07289          76 AKRKVELNSYIQSLMNSSTEVAECDLVYTFFH  107 (109)
T ss_pred             HHHHHHHHHHHHHHHcCChhhhcChHHHHhcc
Confidence            99999999999999965 57999999999985

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom

>cd06887 PX_p47phox The phosphoinositide binding Phox Homology domain of the p47phox subunit of NADPH oxidase

Probab=99.63  E-value=1.6e-15  Score=140.63  Aligned_cols=92  Identities=27%  Similarity=0.419  Sum_probs=80.9

Q ss_pred             CCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC---------CCCCCCCCCcccCCCCHHHHHHHHHH
Q 004913           64 SDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK---------KNIPPAPPKGLLRMKSRALLEERRCS  134 (724)
Q Consensus        64 sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~---------~~LPpLPPKk~fg~~s~eFLEERR~g  134 (724)
                      .++|.+|.|.|...+    ...|.|+||||||..||.+|+..||.         ..+|+||+|.++++.  ++.|+||.+
T Consensus        15 ~~~~y~Y~i~v~~s~----~~~~~v~RrYsdF~~L~~~L~~~fp~Eag~~~~~~r~lP~lP~k~~~~~~--~v~e~Rr~~   88 (118)
T cd06887          15 PSQHYVYMFLVKWQD----LSEKLVYRRFTEIYEFHKTLKEMFPIEAGDINKENRIIPHLPAPKWFDGQ--RAAENRQGT   88 (118)
T ss_pred             CCCcEEEEEEEEEcC----CcEEEEEeeHHHHHHHHHHHHHhCCccccccCCCCCcCCCCCCCcccCcc--hHHHHHHHH
Confidence            467999999996544    36899999999999999999999995         679999999887764  999999999


Q ss_pred             HHHHHHHHhc-ccCCCCCHHHhhccCcc
Q 004913          135 LEEWMTKLLS-DIDLSRSVSVASFLELE  161 (724)
Q Consensus       135 LEkYLqrLLs-hP~Ls~S~~L~sFLElE  161 (724)
                      |+.||+.|+. .+.+++|+.|..||...
T Consensus        89 L~~Yl~~Ll~lp~~i~~s~~v~~Ff~~~  116 (118)
T cd06887          89 LTEYCSTLLSLPPKISRCPHVLDFFKVR  116 (118)
T ss_pred             HHHHHHHHHhCCchhhCCHHHHHHhCcC
Confidence            9999999975 56899999999999753

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p47phox is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal PX domain, two Src Homology 3 (SH3) domains, and a C-terminal domain that contains PxxP motifs for binding SH3 domains. The PX domain of p47phox is unique in that it contains two distinct basic pockets on the membrane-binding surface: one

>cd06888 PX_FISH The phosphoinositide binding Phox Homology domain of Five SH protein

Probab=99.59  E-value=6.8e-15  Score=136.52  Aligned_cols=92  Identities=25%  Similarity=0.382  Sum_probs=79.8

Q ss_pred             CCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC---------CCCCCCCCCcccCCCC-HHHHHHHHHH
Q 004913           65 DPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK---------KNIPPAPPKGLLRMKS-RALLEERRCS  134 (724)
Q Consensus        65 k~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~---------~~LPpLPPKk~fg~~s-~eFLEERR~g  134 (724)
                      ..|.+|.|.|...++    ..|.|+||||||..||.+|+..||.         +.+|.||+|.++++.. .++.++|+..
T Consensus        16 ~k~y~Y~i~V~~~dg----~~~~v~RrYs~F~~Lh~~L~~~FP~eag~~~~~~r~lP~lP~k~~~g~s~~~~~~e~R~~~   91 (119)
T cd06888          16 SKHYVYIINVTWSDG----SSNVIYRRYSKFFDLQMQLLDKFPIEGGQKDPSQRIIPFLPGKILFRRSHIRDVAVKRLKP   91 (119)
T ss_pred             CCcEEEEEEEEEcCC----CEEEEEEeHHHHHHHHHHHHHhCchhhccCCCCccccCCCCCCcccCcchhHHHHHHHHHH
Confidence            456699999976543    5799999999999999999999995         2599999999888654 6799999999


Q ss_pred             HHHHHHHHhccc-CCCCCHHHhhccCc
Q 004913          135 LEEWMTKLLSDI-DLSRSVSVASFLEL  160 (724)
Q Consensus       135 LEkYLqrLLshP-~Ls~S~~L~sFLEl  160 (724)
                      |+.||+.|++.| .|++|+.|..|++.
T Consensus        92 L~~Yl~~Ll~lp~~Is~~~~v~~FF~p  118 (119)
T cd06888          92 IDEYCKALVRLPPHISQCDEVLRFFEA  118 (119)
T ss_pred             HHHHHHHHHcCCceeecCHHHHHhcCC
Confidence            999999999886 57899999999863

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Five SH (FISH), also called Tks5, is a scaffolding protein and Src substrate that is localized in podosomes, which are electron-dense structures found in Src-transformed fibroblasts, osteoclasts, macrophages, and some invasive cancer cells. FISH contains an N-terminal PX domain and five Src homology 3 (SH3) domains. FISH binds and regulates some members of the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. It is required for podosome formation, degradation of the extracellular matrix, and cancer cell invasion. This subfamily also includes proteins with a different number of SH3 domains than FISH, such as Tks4, which contains

>cd07290 PX_PI3K_C2_beta The phosphoinositide binding Phox Homology Domain of the Beta Isoform of Class II Phosphoinositide 3-Kinases

Probab=99.58  E-value=8.9e-15  Score=134.28  Aligned_cols=92  Identities=22%  Similarity=0.361  Sum_probs=79.5

Q ss_pred             CCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCC-HHHHHHHHHHHHHHHHHHh
Q 004913           65 DPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKS-RALLEERRCSLEEWMTKLL  143 (724)
Q Consensus        65 k~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s-~eFLEERR~gLEkYLqrLL  143 (724)
                      +.|.+|.|.|...+.   ...|.|.|||+||..||.+|++.||...+|+||+|.++++.+ ++..|+|+.+|+.||+.|+
T Consensus        14 ~k~y~Y~I~V~~~~~---~~~~~I~RrY~eF~~Lh~kLk~~FP~~~lP~LP~k~~~g~s~~~~vae~R~~~L~~Yl~~Ll   90 (109)
T cd07290          14 SKGYAYVVKVQREGH---KEATFVQRTFEEFQELHNKLRLLFPSSKLPSFPSRFVIGRSRGEAVAERRKEELNGYIWHLI   90 (109)
T ss_pred             CCcEEEEEEEEECCC---ceeEEEEeeHHHHHHHHHHHHHHCccccCCCCCCCcccCccccHHHHHHHHHHHHHHHHHHH
Confidence            345669999965432   345999999999999999999999988899999999888755 7999999999999997755


Q ss_pred             -cccCCCCCHHHhhccC
Q 004913          144 -SDIDLSRSVSVASFLE  159 (724)
Q Consensus       144 -shP~Ls~S~~L~sFLE  159 (724)
                       ..|.|++|+.|.+|+.
T Consensus        91 ~~~~~Is~s~~v~~FF~  107 (109)
T cd07290          91 HAPPEVAECDLVYTFFH  107 (109)
T ss_pred             cCChheecCHHHHHhcc
Confidence             6778999999999985

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domai

>cd07296 PX_PLD1 The phosphoinositide binding Phox Homology domain of Phospholipase D1

Probab=99.48  E-value=1.8e-13  Score=129.82  Aligned_cols=91  Identities=22%  Similarity=0.336  Sum_probs=71.3

Q ss_pred             CCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcc-----------------cCCC-CH
Q 004913           64 SDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGL-----------------LRMK-SR  125 (724)
Q Consensus        64 sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~-----------------fg~~-s~  125 (724)
                      ...|++|+|.|..  +   ...|+|.|||+||..||..|.. |+...-.|||+|.+                 +... +.
T Consensus        22 ~~~~t~Y~I~v~~--g---~~~w~V~rRy~~F~~Lh~~L~~-~~~~~~~plP~k~~~~~r~~~~~~~~~~~p~lp~~~~~   95 (135)
T cd07296          22 KPSLNVYTIELTH--G---EFTWQVKRKFKHFQELHRELLR-YKAFIRIPIPTRSHTVRRQTIKRGEPRHMPSLPRGAEE   95 (135)
T ss_pred             ccceEEEEEEEEe--C---CEEEEEEeehHHHHHHHHHHHh-cCCCCCCCCCcccchhhccccccccccccccCCCCCCc
Confidence            4579999999943  3   3699999999999999999997 55432235778765                 2211 11


Q ss_pred             HHHH----HHHHHHHHHHHHHhcccCCCCCHHHhhccCc
Q 004913          126 ALLE----ERRCSLEEWMTKLLSDIDLSRSVSVASFLEL  160 (724)
Q Consensus       126 eFLE----ERR~gLEkYLqrLLshP~Ls~S~~L~sFLEl  160 (724)
                      ...|    +||.+||.||++|+..|..+++.++.+||+.
T Consensus        96 ~v~e~~~~sRr~~LE~YL~~LL~~~~~Rn~~a~~eFLeV  134 (135)
T cd07296          96 EAREEQFSSRRKQLEDYLSKLLKMPMYRNYHATMEFIDV  134 (135)
T ss_pred             cccccchHHHHHHHHHHHHHHhcChhhcCCHHHHhheec
Confidence            2444    8999999999999999999999999999985

The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD1 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It acts as an effector of Rheb in the signaling of the mammalian target of rapamycin (mTOR), a serine/threonine protein kinase that transduces nutrients and other stimuli to regulate many cellular processes. PLD1 also regulates the secretion of the procoagulant von Will

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.29  E-value=6.3e-12  Score=133.25  Aligned_cols=109  Identities=27%  Similarity=0.392  Sum_probs=86.2

Q ss_pred             EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHH
Q 004913           49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALL  128 (724)
Q Consensus        49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eFL  128 (724)
                      .+..|.+.-   +...+.|++|.|+|+..     ...|.|.|||+||..||++|..+.. ..---||||++.|++++.|+
T Consensus        12 ~~~~~~~~~---~~~~~~~t~y~i~v~~g-----~~ew~v~~ry~df~~lheklv~e~~-i~k~llppkk~ig~~~~s~~   82 (490)
T KOG1259|consen   12 TVTVPKFSN---ESSSGGVTYYDIKVRVG-----KVEWLVERRYRDFANLHEKLVGEIS-ISKKLLPPKKLVGNKQPSFL   82 (490)
T ss_pred             ccccccccc---ccccCceEEEEEEEEec-----ceeeeehhhhhHHHHHHHHhhhhhe-eccccCCchhhcCCCChhHH
Confidence            455555542   22457899999999643     3699999999999999999987654 12224789999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCHHHhhccCcchhhhh
Q 004913          129 EERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAARS  166 (724)
Q Consensus       129 EERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa~aRs  166 (724)
                      |+||..||-|||.++.-..---..++.+||.+..+--.
T Consensus        83 e~r~~~leiylq~ll~~f~~~~pr~la~fl~f~~y~i~  120 (490)
T KOG1259|consen   83 EQRREQLEIYLQELLIYFRTELPRALAEFLDFNKYDII  120 (490)
T ss_pred             HHHHHHHHHHHHHHHHHccccCHHHHHHHhccchHHHH
Confidence            99999999999999976655567789999988765544

>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]

Probab=99.26  E-value=1e-11  Score=139.20  Aligned_cols=103  Identities=27%  Similarity=0.306  Sum_probs=85.5

Q ss_pred             EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcce---EEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC----
Q 004913           49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTR---GVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR----  121 (724)
Q Consensus        49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w---~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg----  121 (724)
                      .|++|...... ....+.|+.|.|.-....|.+.....   .|.||||||.+||..|...||.+.+||+|+|.+++    
T Consensus       134 ~~~~p~s~~~~-~~s~~~~~~y~i~~~~n~~~f~~~~~~~~~V~RRySdf~~Lh~~L~~~~p~~~iPplP~K~~~s~~~~  212 (524)
T COG5391         134 TVSNPQSLTLL-VDSRDKHTSYEIITVTNLPSFQLRESRPLVVRRRYSDFESLHSILIKLLPLCAIPPLPSKKSNSEYYG  212 (524)
T ss_pred             ccccchhcccc-cccCCCcceeeEEEeecCccccccccccceeeeccccHHHHHHHhhhhCCCCCCCCCCchhhhccccc
Confidence            45555554433 22456899999988766666554444   99999999999999999999999999999998763    


Q ss_pred             -CCCHHHHHHHHHHHHHHHHHHhcccCCCCCH
Q 004913          122 -MKSRALLEERRCSLEEWMTKLLSDIDLSRSV  152 (724)
Q Consensus       122 -~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~  152 (724)
                       ++++.|+++|+.+|+.||+.++.||.+.++.
T Consensus       213 ~~~~~~~i~~r~~~L~~~~~~~~~hp~lsn~~  244 (524)
T COG5391         213 DRFSDEFIEERRQSLQNFLRRVSTHPLLSNYK  244 (524)
T ss_pred             cccchHHHHHHHHHHHHHHHHHhcCccccccc
Confidence             7789999999999999999999999999876

>cd06889 PX_NoxO1 The phosphoinositide binding Phox Homology domain of Nox Organizing protein 1

Probab=99.16  E-value=1.7e-10  Score=108.02  Aligned_cols=92  Identities=26%  Similarity=0.232  Sum_probs=77.9

Q ss_pred             CCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC---------CCCCCCCCCcccCCC--CHHHHHHHHH
Q 004913           65 DPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK---------KNIPPAPPKGLLRMK--SRALLEERRC  133 (724)
Q Consensus        65 k~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~---------~~LPpLPPKk~fg~~--s~eFLEERR~  133 (724)
                      ..+-+|.|.|...+    +..|.|+|||+||..||.+|+..||.         +.+|.||.|.++++.  ..+.=++|+.
T Consensus        17 ~~h~~Y~i~V~wsd----gs~~~iyR~y~eF~~lh~~L~~~FP~EaG~~~~~~riLP~lP~~~~~~~~~~~~~~a~~R~~   92 (121)
T cd06889          17 RRHKTYMFSVLWSD----GSELFVYRSLEEFRKLHKQLKEKFPVEAGLLRSSDRVLPKFKDAPSLGSLKGSTSRSLARLK   92 (121)
T ss_pred             cceeEEEEEEEEcC----CcEEEEEEEHHHHHHHHHHHHHHCCcccCCCCCCCcccCCCCCCcccCCcccccchHHHHHH
Confidence            34669999997664    36899999999999999999999993         469999999888764  3335679999


Q ss_pred             HHHHHHHHHhccc-CCCCCHHHhhccCc
Q 004913          134 SLEEWMTKLLSDI-DLSRSVSVASFLEL  160 (724)
Q Consensus       134 gLEkYLqrLLshP-~Ls~S~~L~sFLEl  160 (724)
                      .|+.|++.|++-| .|++|+.|..|+..
T Consensus        93 ~L~~Y~~~Ll~lp~~Is~~~~V~~FF~p  120 (121)
T cd06889          93 LLETYCQELLRLDEKVSRSPEVIQFFAP  120 (121)
T ss_pred             HHHHHHHHHHcCCcceecCHHHHHhcCC
Confidence            9999999999765 69999999999864

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Nox Organizing protein 1 (NoxO1) is a critical regulator of enzyme kinetics of the nonphagocytic NADPH oxidase Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Nox1 is expressed in colon, stomach, uterus, prostate, and vascular smooth muscle cells. NoxO1, a homolog of the p47phox subunit of phagocytic NADPH oxidase, is involved in targeting activator subunits (such as NoxA1) to Nox1. It is co-localized with Nox1 in the membranes of resting cells and directs the subcellular localization of Nox1. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain

>cd06896 PX_PI3K_C2_gamma The phosphoinositide binding Phox Homology Domain of the Gamma Isoform of Class II Phosphoinositide 3-Kinases

Probab=99.07  E-value=4.8e-10  Score=101.95  Aligned_cols=86  Identities=27%  Similarity=0.376  Sum_probs=74.3

Q ss_pred             EEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHhcc-cC
Q 004913           69 FYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSD-ID  147 (724)
Q Consensus        69 vY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eFLEERR~gLEkYLqrLLsh-P~  147 (724)
                      .|.|+|.-+++    ..-.|.|+|.+|..||++|++.||...+|.+|.++..+..+.+  .+|.+.|+.||+.|++- |.
T Consensus        14 lY~i~V~~sd~----~~t~v~Rs~eeF~eLH~~L~~~FP~~~LP~fP~~~~~~~~~~~--~~R~~~L~~Yl~~Ll~~~~e   87 (101)
T cd06896          14 LYLVQVTQSCN----LVSLTEKSFEQFSELHSQLQKQFPSLALPEFPHWWHLPFTDSD--HKRVRDLNHYLEQLLSGSRE   87 (101)
T ss_pred             EEEEEEEEeCC----CcceeeecHHHHHHHHHHHHHHCccccccCCCCccccCcccHH--HHHHHHHHHHHHHHHccCHH
Confidence            69999966543    5678999999999999999999999999999999866665543  67999999999999965 68


Q ss_pred             CCCCHHHhhccCc
Q 004913          148 LSRSVSVASFLEL  160 (724)
Q Consensus       148 Ls~S~~L~sFLEl  160 (724)
                      +++|+.|.+|+..
T Consensus        88 Va~sd~v~sFF~~  100 (101)
T cd06896          88 VANSDCVLSFFLS  100 (101)
T ss_pred             HhcchHHHHHhhc
Confidence            9999999999853

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom

>KOG3784 consensus Sorting nexin protein SNX27 [General function prediction only; Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.96  E-value=1.1e-09  Score=118.66  Aligned_cols=88  Identities=27%  Similarity=0.460  Sum_probs=80.4

Q ss_pred             CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Q 004913           63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKL  142 (724)
Q Consensus        63 ~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eFLEERR~gLEkYLqrL  142 (724)
                      +...|++|+|++        ....++.+|||.|..||..|++.|.+..+|++|||+.|.. .+.-+++||.+||+||+.+
T Consensus        13 ~~~~ytaynih~--------nG~~~~~~r~s~~~~l~~~lr~~~~~~~~p~~p~k~~f~L-~~~~~~~rr~~leqylqa~   83 (407)
T KOG3784|consen   13 SLERYTAYNIHI--------NGRQHGSVRYSQLVELHEQLKKHFYDYCLPQFPPKKLFKL-TPQQLDSRRRGLEQYLQAV   83 (407)
T ss_pred             Ccccccceeeee--------cceeEEEEehHHHHhHHHHHHHHhhcccCCCCCcccccCC-ChhhhHHHHHHHHHHHHHH
Confidence            456799999999        3577899999999999999999999899999999998865 4599999999999999999


Q ss_pred             hcccCCCCCHHHhhccC
Q 004913          143 LSDIDLSRSVSVASFLE  159 (724)
Q Consensus       143 LshP~Ls~S~~L~sFLE  159 (724)
                      +++|.++.+..+..||.
T Consensus        84 ~q~~~l~~s~~~~~fL~  100 (407)
T KOG3784|consen   84 CQDPVLARSELVQKFLM  100 (407)
T ss_pred             hcCccccchhhhhHHHH
Confidence            99999999999999994

>cd07297 PX_PLD2 The phosphoinositide binding Phox Homology domain of Phospholipase D2

Probab=98.69  E-value=7.6e-08  Score=91.22  Aligned_cols=102  Identities=18%  Similarity=0.223  Sum_probs=72.0

Q ss_pred             EEEecceEEccCCCCCCCe--EEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCC----------------
Q 004913           49 CVTIPSWVVLPKSRDSDPV--VFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKN----------------  110 (724)
Q Consensus        49 ~VsIPS~~~v~~s~~sk~y--VvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~----------------  110 (724)
                      .|.|-.......  +++.+  .+|+|.++  .+   .-.|.|.|||.+|..||..|...--...                
T Consensus         5 ~~~V~~~er~~s--~s~~~~~~lYtIelt--HG---~F~W~IkRryKhF~~LHr~L~~~k~~~~~~P~~~~~~~r~~~~~   77 (130)
T cd07297           5 TAKVENTERYTT--GSKVHVCTLYTVRLT--HG---EFTWTVKKKFKHFQELHRDLYRHKVMLSFLPLGRFAIQHRQQLE   77 (130)
T ss_pred             EEEEEEEEEeec--ccccccceeEEEEEe--cC---ceEEEEEehhhhHHHHHHHHHHHHHhhhcCCchhhhhhhccccc
Confidence            455555544322  23333  69999993  33   2599999999999999999986321122                


Q ss_pred             -----CCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCc
Q 004913          111 -----IPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL  160 (724)
Q Consensus       111 -----LPpLPPKk~fg~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLEl  160 (724)
                           +|.||...-.  - .+-+..|++.||.||++|+..|.-.+..+..+||+.
T Consensus        78 ~~~~~mP~LP~~~~~--~-~~~~~sr~kqLE~YLn~LL~~~~YRn~~atleFLeV  129 (130)
T cd07297          78 GLTEEMPSLPGTDRE--A-SRRTASKPKYLENYLNNLLENSFYRNYHAMMEFLAV  129 (130)
T ss_pred             cccCcCCCCCCCCch--h-hhhhhhHHHHHHHHHHHHhcchhhcCChhheeeeec
Confidence                 3444433211  1 255788999999999999999999999999999985

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD2 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It mediates EGF-dependent insulin secretion and EGF-induced Ras activation by the guanine nucleotide-exchange factor

>KOG2101 consensus Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s) [Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]

Probab=98.32  E-value=1.2e-06  Score=93.64  Aligned_cols=93  Identities=28%  Similarity=0.319  Sum_probs=74.4

Q ss_pred             CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHC-CCC--CCCCCC----CCcccCCCCHHHHHHHHHHH
Q 004913           63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAF-PKK--NIPPAP----PKGLLRMKSRALLEERRCSL  135 (724)
Q Consensus        63 ~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~f-P~~--~LPpLP----PKk~fg~~s~eFLEERR~gL  135 (724)
                      ....|++|.|.|.+.........|.|+|||+||..||..|++.| |..  ..|..|    .+.++++++..++.+|+.++
T Consensus       131 ~~~~~~vy~~~v~~~~~~~~~~~~~V~rRysdf~~l~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  210 (362)
T KOG2101|consen  131 KSKSFTVYKVTVSVSSRREDLSTAVVSRRYSDFSRLHRRLKRQFNPALRFPGPKFRNEIQKKKLLGNFDADVIPERSEAL  210 (362)
T ss_pred             cccceeEEEEEEEecCCCccCcCceeeechhHHHHHHHHHHHhcCccccCCCccchhHHHHHHhhccchhhhhhhhhhhH
Confidence            56789999999976654323357999999999999999999999 653  334444    23467788899999999999


Q ss_pred             HHHH--HHHhcccCCCCCHHHh
Q 004913          136 EEWM--TKLLSDIDLSRSVSVA  155 (724)
Q Consensus       136 EkYL--qrLLshP~Ls~S~~L~  155 (724)
                      +.||  +....++.+.++..+.
T Consensus       211 ~~fl~~~f~~~~~~~~~~~~~~  232 (362)
T KOG2101|consen  211 EEFLSLQFKDSKPSNVNCKKVM  232 (362)
T ss_pred             HHHHHhhhhhccccccchHHhh
Confidence            9999  8888888888877665

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=97.79  E-value=7e-05  Score=90.09  Aligned_cols=114  Identities=20%  Similarity=0.329  Sum_probs=92.5

Q ss_pred             CCCCceEEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC
Q 004913           42 PRTGWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR  121 (724)
Q Consensus        42 ~rtGwSy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg  121 (724)
                      .++|.+-.|+|-.+..--.   ...+..|.|+|+-.+.   ...-.+.|-|-+|.+||.+|+..||...+|.+|-.+..+
T Consensus      1370 ~sdgRi~~v~v~~f~K~~~---pnK~YmYvveV~r~n~---~e~s~i~RsF~EF~ElH~KL~~~Fp~~~Lp~fP~~~~~g 1443 (1639)
T KOG0905|consen 1370 NSDGRISEVTVLKFEKHYS---PNKIYMYVVEVTRENQ---AEPSFIFRSFEEFQELHNKLRARFPSMKLPSFPHRIHLG 1443 (1639)
T ss_pred             ccCCceEEEEEEEeeeecc---CCceEEEEEEEEecCC---CCchHHHHhHHHHHHHHHHHHHhCccccCCCCCceeeec
Confidence            6678888898888875322   2446689999954332   345679999999999999999999999999999887666


Q ss_pred             CCC-HHHHHHHHHHHHHHHHHHhcc-cCCCCCHHHhhccCcc
Q 004913          122 MKS-RALLEERRCSLEEWMTKLLSD-IDLSRSVSVASFLELE  161 (724)
Q Consensus       122 ~~s-~eFLEERR~gLEkYLqrLLsh-P~Ls~S~~L~sFLElE  161 (724)
                      +.+ .+.-++|+..|+.||..|..- +++++|..|.+|+-..
T Consensus      1444 rsnikaVA~kR~~~ln~yl~~L~nas~EVa~cDlVyTFFhpl 1485 (1639)
T KOG0905|consen 1444 RSNIKAVAEKRIIELNKYLISLFNASDEVAHCDLVYTFFHPL 1485 (1639)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhcCCchhhccceeeeeechh
Confidence            544 789999999999999999965 5799999999998544

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.68  E-value=0.006  Score=69.96  Aligned_cols=185  Identities=19%  Similarity=0.278  Sum_probs=131.2

Q ss_pred             HHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhh---HHHHHHHHHHhhHh----hhhhhhcHHHHHHH
Q 004913          407 RRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKS---KETLQQAILSERER----LTQMQWDMEELRQK  479 (724)
Q Consensus       407 ~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~---ke~lqQa~l~ErEr----~t~mqwdmeelr~k  479 (724)
                      .||....++|++...+..+-.+--+.|-..++.++..|..++|+.   ++.|--|+.. |.|    +-+..|++++|+.+
T Consensus       262 ~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~-RDrt~aeLh~aRLe~aql~~q  340 (546)
T PF07888_consen  262 QRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNV-RDRTMAELHQARLEAAQLKLQ  340 (546)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhHHHHHHH
Confidence            566666666666665555555555677777888888888887654   3444444444 433    34557899999999


Q ss_pred             HHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhh---hcccchhHHHHHHHHHhhhhHH
Q 004913          480 SLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEA---KSKADIKVLVKEVKFLRSSQIG  555 (724)
Q Consensus       480 ~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEa---kskad~KvLvKEVKsLR~s~~~  555 (724)
                      +.+....|+..          +....+|++ +.+.....++.++.|+.+...++-   ..+++.-.|.+++...+.+..-
T Consensus       341 Lad~~l~lke~----------~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~v  410 (546)
T PF07888_consen  341 LADASLELKEG----------RSQWAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRV  410 (546)
T ss_pred             HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence            99888887654          245566666 666677777888888877766554   3467778999999999888865


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 004913          556 LKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQAC  605 (724)
Q Consensus       556 lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC  605 (724)
                      .=.|..+-+.|+...-+++|.||+..   ..=+..|++.++.|+.||.--
T Consensus       411 qlsE~~rel~Elks~lrv~qkEKEql---~~EkQeL~~yi~~Le~r~~~~  457 (546)
T PF07888_consen  411 QLSENRRELQELKSSLRVAQKEKEQL---QEEKQELLEYIERLEQRLDKV  457 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence            55666677777777778999999443   234678999999999999854

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=97.61  E-value=0.0076  Score=64.98  Aligned_cols=202  Identities=22%  Similarity=0.319  Sum_probs=114.6

Q ss_pred             HHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHh-hhhhhhcHHHHHHH
Q 004913          401 VLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERER-LTQMQWDMEELRQK  479 (724)
Q Consensus       401 vl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr-~t~mqwdmeelr~k  479 (724)
                      |-+||=+||..+|-+.|+|+-.+-||+   +|||   ++|.--|...++. |-.|+++.-.|.|. |..++=-++.|+++
T Consensus        78 isN~LlKkl~~l~keKe~L~~~~e~EE---E~lt---n~L~rkl~qLr~E-K~~lE~~Le~EqE~~V~kL~k~i~~Le~e  150 (310)
T PF09755_consen   78 ISNTLLKKLQQLKKEKETLALKYEQEE---EFLT---NDLSRKLNQLRQE-KVELENQLEQEQEYLVNKLQKKIERLEKE  150 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH---HHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            445666677777777777776666654   4444   4444555544443 33677777777776 45544444445444


Q ss_pred             HHHHHHHhccccCCCCcccchhhhhHHHHh--HHHHHHHHHHHHHHHHHHHHH---------------Hh----hhcccc
Q 004913          480 SLEMEWKLKSKQDGNPHAESMEESTVKDKN--VLQELDATKEQLENLSKRYEE---------------LE----AKSKAD  538 (724)
Q Consensus       480 ~~e~E~~lks~~~~~~~~e~~~~s~~~e~~--~~qel~~~~~~~e~l~k~~~e---------------lE----akskad  538 (724)
                      ...+...|.-...+|...|.+++.-.+-.=  |-++|+.....-..|+.+++.               ..    .+.-+.
T Consensus       151 ~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~sh  230 (310)
T PF09755_consen  151 KSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSH  230 (310)
T ss_pred             HHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHH
Confidence            444444444444444444443332111111  333333333333334433331               00    223345


Q ss_pred             hhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHH---HHHHHHHHhhhcccccccccC
Q 004913          539 IKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHE---CRILLNRFQACNANLYAEEED  615 (724)
Q Consensus       539 ~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhe---c~iL~~rLqEC~~~~~~ee~~  615 (724)
                      ++.|..||..||.++...+++      ........++.|++..+.-...++||.+|   |..|+..|-|.-..+=++++-
T Consensus       231 I~~Lr~EV~RLR~qL~~sq~e------~~~k~~~~~~eek~ireEN~rLqr~L~~E~erreal~R~lsesEsslE~ddEr  304 (310)
T PF09755_consen  231 IRSLRQEVSRLRQQLAASQQE------HSEKMAQYLQEEKEIREENRRLQRKLQREVERREALCRHLSESESSLEMDDER  304 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHh
Confidence            667778888888776644443      34456677888888888777888888766   678998888876666555544

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=97.55  E-value=0.009  Score=71.06  Aligned_cols=29  Identities=21%  Similarity=0.289  Sum_probs=17.3

Q ss_pred             chHHHHHHH---HHHHHhhHHHHHHHHHHHHHHhh
Q 004913          672 TDNELREVI---ADILVDNAKLRKQVNSVLRRALL  703 (724)
Q Consensus       672 ~d~elrk~l---ad~~idna~LRkq~Nsv~r~al~  703 (724)
                      .+.++++.+   .+.|..   ....+|.+.+..+.
T Consensus      1019 i~~~~~~~f~~~~~~F~~---v~~~f~~~F~~lf~ 1050 (1179)
T TIGR02168      1019 LEEAIEEIDREARERFKD---TFDQVNENFQRVFP 1050 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence            556666666   666643   45566666666554

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>cd07298 PX_RICS The phosphoinositide binding Phox Homology domain of PX-RICS

Probab=97.47  E-value=0.0004  Score=65.04  Aligned_cols=84  Identities=20%  Similarity=0.294  Sum_probs=65.0

Q ss_pred             CeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHH-----CCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHH
Q 004913           66 PVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKA-----FPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMT  140 (724)
Q Consensus        66 ~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~-----fP~~~LPpLPPKk~fg~~s~eFLEERR~gLEkYLq  140 (724)
                      +-++|.|+|.++     ++.|.|.|+|-||.-|.+.|...     |..  ++.||++..... .+++++   ..|.+||.
T Consensus        26 ~e~~~~v~v~Cq-----grsw~VkRSyEdfr~LD~~LHrCvyDRrfS~--L~eLp~~~~l~~-~~~~v~---~~l~~YL~   94 (115)
T cd07298          26 KELVYLVQIACQ-----GRSWIVKRSYEDFRVLDKHLHLCIYDRRFSQ--LPELPRSDSLKD-SPESVT---QMLMAYLS   94 (115)
T ss_pred             CCeEEEEEEEeC-----CCceEEEeeHHHHHHHHHHHHHHHHhhhhhc--cccCCCcccccc-cHHHHH---HHHHHHHH
Confidence            347999999775     36999999999999999999887     544  788998764433 357774   48999999


Q ss_pred             HHhccc-CCCCCHHHhhccCc
Q 004913          141 KLLSDI-DLSRSVSVASFLEL  160 (724)
Q Consensus       141 rLLshP-~Ls~S~~L~sFLEl  160 (724)
                      ++-..- ..-+|.++..||++
T Consensus        95 RlS~Ia~~~~nCGPvLtWlei  115 (115)
T cd07298          95 RLSAIAGNKINCGPALTWMEI  115 (115)
T ss_pred             HHHHHhhCCccchhcceeeeC
Confidence            887653 34578888888864

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. RICS is a Rho GTPase-activating protein for cdc42 and Rac1. It is implicated in the regulation of postsynaptic signaling and neurite outgrowth. An N-terminal splicing variant of RICS containing additional PX and Src Homology 3 (SH3) domains, also called PX-RICS, is the main isoform expressed during neural development. PX-RICS is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=97.31  E-value=0.06  Score=66.63  Aligned_cols=28  Identities=18%  Similarity=0.326  Sum_probs=14.3

Q ss_pred             hHhhhhhhhcHHHHHHHHHHHHHHhccc
Q 004913          463 RERLTQMQWDMEELRQKSLEMEWKLKSK  490 (724)
Q Consensus       463 rEr~t~mqwdmeelr~k~~e~E~~lks~  490 (724)
                      .+.+..+.|.+..+..+..+.+..+...
T Consensus       778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  805 (1163)
T COG1196         778 KEEIEELEEKRQALQEELEELEEELEEA  805 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555555555544443

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=97.27  E-value=0.043  Score=65.43  Aligned_cols=26  Identities=12%  Similarity=0.270  Sum_probs=13.1

Q ss_pred             hhhhhhhcHHHHHHHHHHHHHHhccc
Q 004913          465 RLTQMQWDMEELRQKSLEMEWKLKSK  490 (724)
Q Consensus       465 r~t~mqwdmeelr~k~~e~E~~lks~  490 (724)
                      .+..++..+++++.+..+.+..+...
T Consensus       783 ~~~~~~~~~~~~~~~~~~~~~~l~~~  808 (1179)
T TIGR02168       783 EIEELEAQIEQLKEELKALREALDEL  808 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555544444433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=97.25  E-value=0.045  Score=65.71  Aligned_cols=11  Identities=9%  Similarity=0.021  Sum_probs=5.5

Q ss_pred             chHHHHHHHHH
Q 004913          672 TDNELREVIAD  682 (724)
Q Consensus       672 ~d~elrk~lad  682 (724)
                      +++++++.+--
T Consensus       608 ~~~~~~~~~~~  618 (1164)
T TIGR02169       608 FDPKYEPAFKY  618 (1164)
T ss_pred             CcHHHHHHHHH
Confidence            45555555443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.02  E-value=0.062  Score=61.97  Aligned_cols=58  Identities=22%  Similarity=0.309  Sum_probs=31.3

Q ss_pred             hhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhH--------------HHHHHhhhhhhHHHHHHHHHhhHH
Q 004913          396 HKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTV--------------KDYLMTKVKDLEVELETTKQKSKE  453 (724)
Q Consensus       396 ~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~av--------------k~fL~tKvkDlE~eLe~t~~~~ke  453 (724)
                      .+|..-+..|++-|.+.+..|+.|-...-.-...              ..=+..+++.||.++.+..++.++
T Consensus       167 ~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E  238 (546)
T PF07888_consen  167 EQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKE  238 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555666666666666555432211111              122456777788777777777643

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK02224 chromosome segregation protein; Provisional

Probab=96.88  E-value=0.48  Score=56.51  Aligned_cols=37  Identities=16%  Similarity=0.248  Sum_probs=16.4

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 004913          541 VLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQE  577 (724)
Q Consensus       541 vLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~E  577 (724)
                      .+-++++.|.....+++++++...++..+++.-|...
T Consensus       346 ~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~  382 (880)
T PRK02224        346 SLREDADDLEERAEELREEAAELESELEEAREAVEDR  382 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444433

>PRK02224 chromosome segregation protein; Provisional

Probab=96.83  E-value=0.29  Score=58.28  Aligned_cols=140  Identities=17%  Similarity=0.192  Sum_probs=76.8

Q ss_pred             ccchhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhh
Q 004913          392 LDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQW  471 (724)
Q Consensus       392 ~d~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqw  471 (724)
                      ...+.+|......++.++...++.+..+-+.|..-....+-+..++++||.++......-.+ +.+.+-.=+..+...+=
T Consensus       306 ~~~~~~l~~~~~~l~~k~~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~~~~~l~~~~~~-l~~~~~~~~~~l~~~~~  384 (880)
T PRK02224        306 DADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAE-LESELEEAREAVEDRRE  384 (880)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            45566666666666666666666666666666655555577777888888888665533332 22222222444555555


Q ss_pred             cHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHh
Q 004913          472 DMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELE  532 (724)
Q Consensus       472 dmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elE  532 (724)
                      +++.++.++.+.+..|.....+....+.....+..+.+ +.+++...+..+..+.+-.++++
T Consensus       385 ~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~  446 (880)
T PRK02224        385 EIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAE  446 (880)
T ss_pred             HHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55556666666655555433322333344444555555 55555555555555554444444

>cd07278 PX_RICS_like The phosphoinositide binding Phox Homology domain of PX-RICS-like proteins

Probab=96.74  E-value=0.0092  Score=56.04  Aligned_cols=88  Identities=24%  Similarity=0.311  Sum_probs=63.4

Q ss_pred             CCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC---CCCCCCCCCcccCCCCHHHHHHHHHHHHHHHH
Q 004913           64 SDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK---KNIPPAPPKGLLRMKSRALLEERRCSLEEWMT  140 (724)
Q Consensus        64 sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~---~~LPpLPPKk~fg~~s~eFLEERR~gLEkYLq  140 (724)
                      ....++|.|+|.++.     ..|.|.|.|-||.-|.+.|....-.   -.++.||+--.. ...++-++   ..|.+||.
T Consensus        23 ~~k~~~~~v~V~cqg-----~sW~VkRSyEdfr~LD~~LHrCiyDRr~S~L~eL~~~~~~-~~~~~~~~---~~l~~YL~   93 (114)
T cd07278          23 SGKELVYLVQVQCQG-----KSWLVKRSYDDFRMLDKHLHQCIYDRKFSQLTELPEECIE-KREQQNLH---QVLSDYLK   93 (114)
T ss_pred             CCCceEEEEEEEeCC-----cceEEEeeHHHHHHHHHHHHHHHHhhhhhccccCCccccc-cchHHHHH---HHHHHHHH
Confidence            345689999997653     6999999999999999999875321   146677764322 12334454   48999999


Q ss_pred             HHhccc-CCCCCHHHhhccCc
Q 004913          141 KLLSDI-DLSRSVSVASFLEL  160 (724)
Q Consensus       141 rLLshP-~Ls~S~~L~sFLEl  160 (724)
                      ++-..- ..-+|.++..||++
T Consensus        94 RlS~Ia~~~inCGPvLtWlei  114 (114)
T cd07278          94 RLSSIAGNLLNCGPVLNWLEL  114 (114)
T ss_pred             HHHHHhcCcccchhcceeeeC
Confidence            987654 35678888888875

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this family include PX-RICS, TCGAP (Tc10/Cdc42 GTPase-activating protein), and similar proteins. They contain N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal extensions. They act as Rho GTPase-activating proteins. PX-RICS is the main isoform expressed during neural development. It is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and PI5P. TCGAP is widely expressed in the brain where it is involved in regulating the outgrowth of axons and d

>cd07299 PX_TCGAP The phosphoinositide binding Phox Homology domain of Tc10/Cdc42 GTPase-activating protein

Probab=96.64  E-value=0.006  Score=57.13  Aligned_cols=87  Identities=21%  Similarity=0.302  Sum_probs=61.0

Q ss_pred             CCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC---CCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHH
Q 004913           65 DPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK---KNIPPAPPKGLLRMKSRALLEERRCSLEEWMTK  141 (724)
Q Consensus        65 k~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~---~~LPpLPPKk~fg~~s~eFLEERR~gLEkYLqr  141 (724)
                      ...++|.|+|.++     ++.|.|.|.|-||.-|.+.|....-.   -.+++|||---.+ ...+.+   ...|.+||.+
T Consensus        23 ~k~~~flv~V~cq-----grsW~v~RSyEdfr~LD~~LHrCiyDRr~S~L~eL~~~~~l~-~~~~~~---~~~l~~YL~R   93 (113)
T cd07299          23 EKDLVFLVQVTCQ-----GRSWMVLRSYEDFRTLDAHLHRCIFDRRFSQLLELPPLCEIG-DRLQIL---TPLLSEYLNR   93 (113)
T ss_pred             CCceEEEEEEEec-----CcceEEeeeHHHHHHHHHHHHHHHHhhhhhhhhccCcccccc-chHHHH---HHHHHHHHHH
Confidence            3468999999765     36999999999999999999875321   1356666552111 122334   4589999999


Q ss_pred             Hhccc-CCCCCHHHhhccCc
Q 004913          142 LLSDI-DLSRSVSVASFLEL  160 (724)
Q Consensus       142 LLshP-~Ls~S~~L~sFLEl  160 (724)
                      +-..- ..-+|.+|..||++
T Consensus        94 lS~Ia~~~inCGPVLtWmeI  113 (113)
T cd07299          94 LTGIVDSNLNCGPVLTWMEI  113 (113)
T ss_pred             HHHHhcCCccccccceeeeC
Confidence            87653 34578888888874

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. TCGAP (Tc10/Cdc42 GTPase-activating protein) contains N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal proline-rich regions. It is widely expressed in the brain where it is involved in regulating the outgrowth of axons and dendrites and is regulated by the protein tyrosine kinase Fyn. It interacts with cdc42 and TC10beta through its GAP domain and with phosphatidylinositol-(4,5)-bisphosphate [PI(4,5)P2] through its PX domain. It is translocated to the plasma membrane in adipocytes in response to insulin and may be involved in the regulation of insulin-stimulated glucose transport. TCGAP has also been named sorting nexins 26 (SNX26). SNXs

>KOG4773 consensus NADPH oxidase [Energy production and conversion]

Probab=96.53  E-value=0.0032  Score=68.62  Aligned_cols=88  Identities=24%  Similarity=0.279  Sum_probs=73.6

Q ss_pred             eEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCC---------CCCCCCCCCCcccCCCCHHHHHHHHHHHHH
Q 004913           67 VVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFP---------KKNIPPAPPKGLLRMKSRALLEERRCSLEE  137 (724)
Q Consensus        67 yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP---------~~~LPpLPPKk~fg~~s~eFLEERR~gLEk  137 (724)
                      +.||.|.|....    .....|+|||.+|..++..|...|+         .+.+|+||.+..|+.. ++--|+|...|..
T Consensus        38 hFvyVievkw~~----~se~vVyrry~E~~~~tkklee~f~~ss~k~t~l~~n~p~LpA~v~fdfk-qe~Ae~r~~~ln~  112 (386)
T KOG4773|consen   38 HFVYVIEVKWYG----GSEGVVYRRYFEFHALTKKLEERFGPSSGKSTALACNLPTLPAIVYFDFK-QEIAEERIPALNA  112 (386)
T ss_pred             heEEEEEehhhc----cccceeeeehhhhhhhcchHhhcCCCcccccCchhccCCCCcceeEechh-hhhhhhhhHHHHH
Confidence            779999885443    2478899999999999999999997         2578999999877654 4888999999999


Q ss_pred             HHHHHhcccC-CCCCHHHhhccC
Q 004913          138 WMTKLLSDID-LSRSVSVASFLE  159 (724)
Q Consensus       138 YLqrLLshP~-Ls~S~~L~sFLE  159 (724)
                      |..-|++-|. +..++.|..|.-
T Consensus       113 y~e~LlslPi~~l~~p~l~~fff  135 (386)
T KOG4773|consen  113 YCEWLLSLPIGRLGGPGLRPFFF  135 (386)
T ss_pred             HHHHHHhcchhhcCCCCceeeee
Confidence            9999999996 457888888874

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=96.53  E-value=1  Score=54.39  Aligned_cols=177  Identities=20%  Similarity=0.226  Sum_probs=118.1

Q ss_pred             HHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHH-------HhhHHHHHHHH-------------H
Q 004913          401 VLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTK-------QKSKETLQQAI-------------L  460 (724)
Q Consensus       401 vl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~-------~~~ke~lqQa~-------------l  460 (724)
                      =+..|+.|+.++.+|.+.++.=|-.+-..-.|+-.|+.-++.+|....       .+......|..             -
T Consensus       253 Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~  332 (775)
T PF10174_consen  253 EIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLR  332 (775)
T ss_pred             HHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            355677788888888888877776666667777777777777776655       22222222222             2


Q ss_pred             HhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccch
Q 004913          461 SERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADI  539 (724)
Q Consensus       461 ~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~  539 (724)
                      .=..+-+.+|=|+|.||.++-+.+..+.-.+.--......+.....|.. +...+++..-.+..|+++++.||-+.+-.-
T Consensus       333 ~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd  412 (775)
T PF10174_consen  333 AKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKD  412 (775)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2234556789999999999999888887665555555566677777777 778888888888899999988888887666


Q ss_pred             hHHHHHHHHHhh-----hhHHHHHHHHHHHHhHHHHHHHHHHH
Q 004913          540 KVLVKEVKFLRS-----SQIGLKQELSQMLNEKSKTEELLQQE  577 (724)
Q Consensus       540 KvLvKEVKsLR~-----s~~~lk~el~~~~~eK~e~E~~l~~E  577 (724)
                      +.|..+.-.|++     .-..+.-.|..++.+|.-+-.-|.+.
T Consensus       413 ~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~  455 (775)
T PF10174_consen  413 RQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQ  455 (775)
T ss_pred             HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777767772     11233344555555554444444333

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG1660 consensus Sorting nexin SNX6/TFAF2, contains PX domain [Defense mechanisms]

Probab=96.41  E-value=0.0044  Score=67.59  Aligned_cols=93  Identities=23%  Similarity=0.372  Sum_probs=72.3

Q ss_pred             EEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHH--HCCCCCCCCCCCCcccC---------------CCCHHHH--
Q 004913           68 VFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKK--AFPKKNIPPAPPKGLLR---------------MKSRALL--  128 (724)
Q Consensus        68 VvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk--~fP~~~LPpLPPKk~fg---------------~~s~eFL--  128 (724)
                      |-|+|++.+..|.+. ....|.|---+|+|||..+..  .|-+..+||.||+.-|-               +.-.+|+  
T Consensus        40 vK~tv~t~t~lp~~~-~e~~v~r~Heef~wlh~~i~~~e~yaG~iiPp~p~~p~fda~reklQkLGeGe~~mTkEEf~Km  118 (399)
T KOG1660|consen   40 VKFTVHTRTTLPLFM-PEFSVVRQHEEFVWLHDTIEENEDYAGVIIPPAPPRPDFDASREKLQKLGEGEGWMTKEEFLKM  118 (399)
T ss_pred             ceeeEEEeeeccCCC-CccceeeeecceeeeeehhhhccCcCceecCCCCCCCCCCCChHHHHHhcCCcccccHHHHHHH
Confidence            679999988888776 888999999999999988864  46678899999986441               1112333  


Q ss_pred             ---------HHHH---HHHHHHHHHHhcccCCCCCHHHhhccCcc
Q 004913          129 ---------EERR---CSLEEWMTKLLSDIDLSRSVSVASFLELE  161 (724)
Q Consensus       129 ---------EERR---~gLEkYLqrLLshP~Ls~S~~L~sFLElE  161 (724)
                               +.=+   ..=|.||++|++||+++.+.-|.-||+.+
T Consensus       119 K~elEaeyLA~fKKTvamhEvfl~RlaahPvlr~d~nf~vflEy~  163 (399)
T KOG1660|consen  119 KQELEAEYLARFKKTVAMHEVFLRRLAAHPVLRLDQNFSVFLEYD  163 (399)
T ss_pred             HHHhhhHHHHHHHHhhccHHHHHHHHhcCCeeecccchhhhhhhc
Confidence                     3222   23467999999999999999999999987

>PRK11637 AmiB activator; Provisional

Probab=96.41  E-value=0.74  Score=51.11  Aligned_cols=16  Identities=31%  Similarity=0.484  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHHHHH
Q 004913          510 VLQELDATKEQLENLS  525 (724)
Q Consensus       510 ~~qel~~~~~~~e~l~  525 (724)
                      +++++...+++++...
T Consensus       171 ~l~~l~~~~~~L~~~k  186 (428)
T PRK11637        171 TIAELKQTREELAAQK  186 (428)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4444444444444333

>TIGR00606 rad50 rad50

Probab=96.37  E-value=1  Score=56.84  Aligned_cols=60  Identities=15%  Similarity=0.298  Sum_probs=33.8

Q ss_pred             hhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHH-------HHHHHHHHHHHHHH
Q 004913          467 TQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDAT-------KEQLENLSKRYEEL  531 (724)
Q Consensus       467 t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~-------~~~~e~l~k~~~el  531 (724)
                      +.+.=++.++++++.+.+..++......     +...+..+.+ +..+++.+       +++.+.++++..+|
T Consensus       795 ~r~~~ei~~l~~qie~l~~~l~~~~~~~-----s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L  862 (1311)
T TIGR00606       795 ERFQMELKDVERKIAQQAAKLQGSDLDR-----TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL  862 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5556777888888888888888654422     2333344333 33344444       44455545555555

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=96.17  E-value=1.3  Score=55.30  Aligned_cols=70  Identities=20%  Similarity=0.259  Sum_probs=40.3

Q ss_pred             HhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004913          531 LEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRF  602 (724)
Q Consensus       531 lEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rL  602 (724)
                      +|++-.-.+|.+-.|++-+++.+..+  +|...-.+..+++.-|..||--++.+.+-+.++-.||+.|++=+
T Consensus       668 ~e~~~e~~lk~~q~~~eq~~~E~~~~--~L~~~e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~  737 (1317)
T KOG0612|consen  668 LEIKLERKLKMLQNELEQENAEHHRL--RLQDKEAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDY  737 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhh
Confidence            33333444444444444444444444  44444555666666667777666677777777777777776533

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=96.14  E-value=0.83  Score=57.19  Aligned_cols=78  Identities=24%  Similarity=0.304  Sum_probs=53.9

Q ss_pred             hcchHHHHHHhhhhhhHH----------HHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHH
Q 004913          413 KTDMEDLITRLNQEMTVK----------DYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLE  482 (724)
Q Consensus       413 ktdmEDLiaRLnqe~avk----------~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e  482 (724)
                      +.|+|++++|++++..++          +-|+.|+.|+|...+.-+++-+...+...-.-+++....+=...+++.+..+
T Consensus       341 ~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  420 (1201)
T PF12128_consen  341 DADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNRQQERLQAQQDEIREEKAERREQIEE  420 (1201)
T ss_pred             HCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            458999999999887665          4789999999999999888877777665555455555554444455555544


Q ss_pred             HHHHhccc
Q 004913          483 MEWKLKSK  490 (724)
Q Consensus       483 ~E~~lks~  490 (724)
                      -...+...
T Consensus       421 ~~~~l~~~  428 (1201)
T PF12128_consen  421 EYQALEQE  428 (1201)
T ss_pred             HHHHHHHH
Confidence            44444433

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=96.14  E-value=0.63  Score=57.95  Aligned_cols=32  Identities=16%  Similarity=0.242  Sum_probs=13.5

Q ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccC
Q 004913          673 DNELREVIADILVDNAKLRKQVNSVLRRALLFRNN  707 (724)
Q Consensus       673 d~elrk~lad~~idna~LRkq~Nsv~r~al~~~~~  707 (724)
                      +.+.+..|-+.|-   ...++++.+....+..+++
T Consensus      1004 d~~~~~~f~~~f~---~In~~F~~if~~L~~GG~a 1035 (1163)
T COG1196        1004 DKEKRERFKETFD---KINENFSEIFKELFGGGTA 1035 (1163)
T ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHHHhCCCCee
Confidence            3344444444443   2334444455444443333

>PRK11637 AmiB activator; Provisional

Probab=95.97  E-value=1.2  Score=49.41  Aligned_cols=27  Identities=26%  Similarity=0.293  Sum_probs=10.1

Q ss_pred             HhhhhHHHHHHHHHHHHhHHHHHHHHH
Q 004913          549 LRSSQIGLKQELSQMLNEKSKTEELLQ  575 (724)
Q Consensus       549 LR~s~~~lk~el~~~~~eK~e~E~~l~  575 (724)
                      |++...+..+++.+.-.+...+++.|.
T Consensus       224 L~~~~~~~~~~l~~l~~~~~~L~~~I~  250 (428)
T PRK11637        224 LESSLQKDQQQLSELRANESRLRDSIA  250 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=95.89  E-value=3.4  Score=53.81  Aligned_cols=295  Identities=22%  Similarity=0.255  Sum_probs=169.5

Q ss_pred             hHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHH------------HHHHh--
Q 004913          397 KLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQ------------AILSE--  462 (724)
Q Consensus       397 kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQ------------a~l~E--  462 (724)
                      .+++=|...+.++.+++-++.-+++=|-......+-|..||.+|+..|+-++.... +|.+            ++-+|  
T Consensus       834 ~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~-~l~~~~~~~d~~~~~~~Lr~~~e  912 (1822)
T KOG4674|consen  834 SLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLL-NLDSKSSNEDATILEDTLRKELE  912 (1822)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh-hccccchhhhhhhhhHHHHHHHH
Confidence            34455667777777778888888888877778888899999999999987765432 2221            22222  


Q ss_pred             -----hHhhhhhhhcHHHHHHHHHHHHHHhccc---cCC-CCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHh
Q 004913          463 -----RERLTQMQWDMEELRQKSLEMEWKLKSK---QDG-NPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELE  532 (724)
Q Consensus       463 -----rEr~t~mqwdmeelr~k~~e~E~~lks~---~~~-~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elE  532 (724)
                           ++.+|-=+=.|.++-..++-+|..|++.   -++ +.-.+........+.- +.+++-..+.+.++|..+. ++.
T Consensus       913 q~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~-~~~  991 (1822)
T KOG4674|consen  913 EITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREEL-ELS  991 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcc
Confidence                 3455555566667777777777776655   111 1111111111111111 5556666666666666555 333


Q ss_pred             hhcccc-hhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHH-------HhhhhHHHHHHHHHHHHHHHHHHHhh
Q 004913          533 AKSKAD-IKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQER-------QTHNHMKTVREKLLHECRILLNRFQA  604 (724)
Q Consensus       533 akskad-~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er-------~~~e~~~~ar~kllhec~iL~~rLqE  604 (724)
                      .+.+.+ .--+++|+++|++-...+.+-.+++...-..+..=|..+.       -.-++...--..+..++.-|+..+-.
T Consensus       992 ~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~ 1071 (1822)
T KOG4674|consen  992 TKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAK 1071 (1822)
T ss_pred             ccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444 5568899999999988888888888776665555544442       11122222223344455566666666


Q ss_pred             hccccc---------ccccCceecccCChhhHHH-hhcccchhHHHHHHHHhhhhhhhhhhhhhhhh-cccCCCCCccch
Q 004913          605 CNANLY---------AEEEDNVILESSSAADALA-LLTSSDDQISLLITEAQLLAEDSKAAASADVE-KAHDNDVCTRTD  673 (724)
Q Consensus       605 C~~~~~---------~ee~~~~~~~~ss~~da~d-lL~tsDnrI~lLlaEaqll~~d~e~~~~~~~~-~~~~~~~~~~~d  673 (724)
                      |+-.+.         -..-+.+.-+-+.-.+|++ .+.-+-.||.-|.++-++|-.--+..++..+. ..+.+..+   +
T Consensus      1072 ~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g---~ 1148 (1822)
T KOG4674|consen 1072 CNDELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLG---L 1148 (1822)
T ss_pred             HHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccc---h
Confidence            664442         1111222233344455654 34556678888888888885554443222221 11122222   4


Q ss_pred             HHHHHHHH--------------HHHHhhHHHHHHHHH
Q 004913          674 NELREVIA--------------DILVDNAKLRKQVNS  696 (724)
Q Consensus       674 ~elrk~la--------------d~~idna~LRkq~Ns  696 (724)
                      ..|+.++.              =++.||++|+-++=+
T Consensus      1149 sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~ 1185 (1822)
T KOG4674|consen 1149 SDLQNIVSFLRKEKEIAETKLDTLKRENARLKQQVAS 1185 (1822)
T ss_pred             HHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            45555543              257899999988766

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.87  E-value=5.1  Score=49.60  Aligned_cols=208  Identities=20%  Similarity=0.235  Sum_probs=119.3

Q ss_pred             cccchhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhh---HHHHHH----HHHHhh
Q 004913          391 PLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKS---KETLQQ----AILSER  463 (724)
Q Consensus       391 p~d~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~---ke~lqQ----a~l~Er  463 (724)
                      |+-+=|+|+-+-.-+    .+.+.|.++|=.    +.+--+=...|-+||..+|+....+-   +.+++|    -+++++
T Consensus       672 ~L~~l~~l~~~~~~~----~~~q~el~~le~----eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~  743 (1174)
T KOG0933|consen  672 LLRQLQKLKQAQKEL----RAIQKELEALER----ELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDL  743 (1174)
T ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHH
Confidence            556677877664422    233334443322    22223335567777777776654432   222222    122222


Q ss_pred             HhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-----HHHHHHHHHHHHHHHH----HHHHHHhhh
Q 004913          464 ERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-----VLQELDATKEQLENLS----KRYEELEAK  534 (724)
Q Consensus       464 Er~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-----~~qel~~~~~~~e~l~----k~~~elEak  534 (724)
                      +   .|-=+++|+.++.-+.+..++.+++.-...|..++....+.+     +..++..+++.++.-+    +++.++| .
T Consensus       744 ~---~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e-~  819 (1174)
T KOG0933|consen  744 K---ELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYE-R  819 (1174)
T ss_pred             H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            2   344477778888888888888887766666665555544443     3334444444333222    2222222 2


Q ss_pred             cccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhc--cccccc
Q 004913          535 SKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACN--ANLYAE  612 (724)
Q Consensus       535 skad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~--~~~~~e  612 (724)
                      ...+.-.|-+|++++..++.+++...+.+..+-.+++.-+....       --..+.+.|+....+++.+|+  ++.+.-
T Consensus       820 l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~-------~~~~~~~~el~~~k~k~~~~dt~i~~~~~  892 (1174)
T KOG0933|consen  820 LQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVE-------KDVKKAQAELKDQKAKQRDIDTEISGLLT  892 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------hHHHHHHHHHHHHHHHHHhhhHHHhhhhh
Confidence            34566677788888888877777777777766666666555433       556778888999999999999  444444


Q ss_pred             ccCce
Q 004913          613 EEDNV  617 (724)
Q Consensus       613 e~~~~  617 (724)
                      ...++
T Consensus       893 ~~e~~  897 (1174)
T KOG0933|consen  893 SQEKC  897 (1174)
T ss_pred             HHHHH
Confidence            44444

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=95.82  E-value=0.11  Score=55.81  Aligned_cols=54  Identities=26%  Similarity=0.212  Sum_probs=40.1

Q ss_pred             hHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhH
Q 004913          399 SRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSK  452 (724)
Q Consensus       399 ~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~k  452 (724)
                      +-+...|+.++...+.|.+.|.+.+++--.+..=|..+-..|+.++...++...
T Consensus       148 ~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~  201 (325)
T PF08317_consen  148 EGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVE  201 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456677777888888888888888887777777777777777777776665544

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=95.79  E-value=0.26  Score=58.71  Aligned_cols=157  Identities=25%  Similarity=0.302  Sum_probs=103.8

Q ss_pred             hhhhH-HHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhh
Q 004913          425 QEMTV-KDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEES  503 (724)
Q Consensus       425 qe~av-k~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s  503 (724)
                      ||.|- -.||+.++.+||.||..+++.---     +..|+||++++.-   +++..+..+|.......++---....-+.
T Consensus        23 ~esa~~E~~~~~~i~~l~~elk~~~~~~~~-----~~~e~~rl~~~~~---~~~~~~~~~e~~~~~lr~e~ke~K~rE~r   94 (717)
T PF09730_consen   23 QESASKEAYLQQRILELENELKQLRQELSN-----VQAENERLSQLNQ---ELRKECEDLELERKRLREEIKEYKFREAR   94 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45544 569999999999999988775433     4578999999754   45666666666555543333333344456


Q ss_pred             hHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 004913          504 TVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHN  582 (724)
Q Consensus       504 ~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e  582 (724)
                      ..++.- |.+|--..|+|+-.|.+--.|+| -.|-++|.|--|+-.|+++..++-.=..-+=++-.|.=..|+.||   |
T Consensus        95 ll~dyselEeENislQKqvs~Lk~sQvefE-~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~ER---e  170 (717)
T PF09730_consen   95 LLQDYSELEEENISLQKQVSVLKQSQVEFE-GLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSER---E  170 (717)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence            666666 77777788999999999899999 468899999999999988866543322222222233334566666   3


Q ss_pred             hHHHHHHHHHH
Q 004913          583 HMKTVREKLLH  593 (724)
Q Consensus       583 ~~~~ar~kllh  593 (724)
                      ...+-|+.|-|
T Consensus       171 qk~~LrkEL~~  181 (717)
T PF09730_consen  171 QKNALRKELDQ  181 (717)
T ss_pred             HHHHHHHHHHH
Confidence            33344444433

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PRK10361 DNA recombination protein RmuC; Provisional

Probab=95.74  E-value=0.54  Score=53.82  Aligned_cols=133  Identities=17%  Similarity=0.287  Sum_probs=88.4

Q ss_pred             HhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhc
Q 004913          409 LVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLK  488 (724)
Q Consensus       409 l~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lk  488 (724)
                      +...+.+.+.+..+|.+.-+-...+...+..|+..|+..++...|.++.---. +++++.   ..+.|..+.+|--    
T Consensus        55 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~-~~~L~~---~F~~LA~~ile~k----  126 (475)
T PRK10361         55 SEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINS-EQRLSE---QFENLANRIFEHS----  126 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHH----
Confidence            34444555566666666666667777777777777777777776655443333 555554   4455555544321    


Q ss_pred             cccCCCCcccchhhhhHHHHh--HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHH
Q 004913          489 SKQDGNPHAESMEESTVKDKN--VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELS  561 (724)
Q Consensus       489 s~~~~~~~~e~~~~s~~~e~~--~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~  561 (724)
                                  -++..+.+.  +-.=|.=++++++.+.++.++++-+...+.--|..|||+|...+..|.+|-.
T Consensus       127 ------------~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~  189 (475)
T PRK10361        127 ------------NRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAI  189 (475)
T ss_pred             ------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        122223333  3344667888888888999999988888889999999999998887777643

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=95.71  E-value=1.2  Score=57.74  Aligned_cols=215  Identities=16%  Similarity=0.202  Sum_probs=149.1

Q ss_pred             hhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhH------HHHHHHHHHhhHhhhh
Q 004913          395 RHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSK------ETLQQAILSERERLTQ  468 (724)
Q Consensus       395 r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~k------e~lqQa~l~ErEr~t~  468 (724)
                      +...+-.+..++.++.-++-.|.++-.-|=-...-++|=..|.+.|+..++++|+...      .+||+.|.....++--
T Consensus       649 ~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~  728 (1822)
T KOG4674|consen  649 KKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHT  728 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445567778888888888999999888888888999999999999999999988655      7899999997776666


Q ss_pred             hhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Q 004913          469 MQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVK  547 (724)
Q Consensus       469 mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVK  547 (724)
                      |-=+|=-|..+.--.+..+.....++...-.+..++..|.+ +..+....+..+-+++-...++|.---|-+.-+-..++
T Consensus       729 ~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~  808 (1822)
T KOG4674|consen  729 LSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIK  808 (1822)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66678788888888888888888888888888899999999 88888888877777775555555433333333334444


Q ss_pred             HHhhhhHHHHHHHHHHHHhHH-----------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 004913          548 FLRSSQIGLKQELSQMLNEKS-----------KTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANL  609 (724)
Q Consensus       548 sLR~s~~~lk~el~~~~~eK~-----------e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~  609 (724)
                      .|-+...+||+++..-..+-.           ..-..|-.+.............+-.+++.|-.++.+-+..+
T Consensus       809 eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l  881 (1822)
T KOG4674|consen  809 ELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRL  881 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444433322222           22233444444444555555555555666666555555443

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=95.59  E-value=0.2  Score=49.24  Aligned_cols=107  Identities=23%  Similarity=0.332  Sum_probs=70.5

Q ss_pred             HHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHh
Q 004913          454 TLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELE  532 (724)
Q Consensus       454 ~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elE  532 (724)
                      .++.-+.....+++++++++++++.+..+.+..+...++.....       .++.. ..++++..++.++.+.+++.++.
T Consensus        78 ~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~~~l~~l~~~~~~~~~e~~~l~  150 (191)
T PF04156_consen   78 RLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQEL-------RELLKSVEERLDSLDESIKELEKEIRELQ  150 (191)
T ss_pred             hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456666788999999999999999999998888774443322       24444 66677777777777777777777


Q ss_pred             hhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004913          533 AKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQER  578 (724)
Q Consensus       533 akskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er  578 (724)
                                 ++++-+|..-.++.+++.+.-..+..++..++..+
T Consensus       151 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  185 (191)
T PF04156_consen  151 -----------KELQDSREEVQELRSQLERLQENLQQLEEKIQELQ  185 (191)
T ss_pred             -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       55555555555555555555444444444444433

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=95.41  E-value=2  Score=52.25  Aligned_cols=101  Identities=23%  Similarity=0.297  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHH
Q 004913          510 VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVRE  589 (724)
Q Consensus       510 ~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~  589 (724)
                      +.+++....++++.+..+..++.....+..+.+-+-.+.|+....+++.++...+..+..++..+++.+++......+-.
T Consensus       327 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~  406 (908)
T COG0419         327 LEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALE  406 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555556666666666667776666677777777777788887888888888788888888888888888777777778


Q ss_pred             HHHHHHHHHHHHHhhhccccc
Q 004913          590 KLLHECRILLNRFQACNANLY  610 (724)
Q Consensus       590 kllhec~iL~~rLqEC~~~~~  610 (724)
                      ++.+.+..+.+++.+|.-.+-
T Consensus       407 ~~~~~~~e~~~~~~~~~~~l~  427 (908)
T COG0419         407 EIQEELEELEKELEELERELE  427 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888877776553

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=95.36  E-value=4.3  Score=47.11  Aligned_cols=233  Identities=20%  Similarity=0.263  Sum_probs=114.9

Q ss_pred             hHhHHHHHHHHHHhhhhcchHHH---HHHhhh--------------hhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHH
Q 004913          397 KLSRVLLTMERRLVTAKTDMEDL---ITRLNQ--------------EMTVKDYLMTKVKDLEVELETTKQKSKETLQQAI  459 (724)
Q Consensus       397 kl~rvl~t~~~rl~~aktdmEDL---iaRLnq--------------e~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~  459 (724)
                      +-..||..++..+...++.|+++   +..|..              ++-.+.|--+.+ +++.++++.+.+..+++....
T Consensus       195 ~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~-~i~~~i~~l~~~i~~~~~~l~  273 (569)
T PRK04778        195 EAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHL-DIEKEIQDLKEQIDENLALLE  273 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCC-ChHHHHHHHHHHHHHHHHHHH
Confidence            55788999999999999999876   444433              233334433332 467777777766666553322


Q ss_pred             HHh----hHhhhhhhhcHHHHHHHHHHHHHHhccc-cCCCCcccchhhhhHHHHh-HHHHHHHHHHH----------HHH
Q 004913          460 LSE----RERLTQMQWDMEELRQKSLEMEWKLKSK-QDGNPHAESMEESTVKDKN-VLQELDATKEQ----------LEN  523 (724)
Q Consensus       460 l~E----rEr~t~mqwdmeelr~k~~e~E~~lks~-~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~----------~e~  523 (724)
                      -.+    ++.+..++=.++.|... ++.|..-+.. +............+..+++ +..|++.+++.          +..
T Consensus       274 ~l~l~~~~~~~~~i~~~Id~Lyd~-lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~  352 (569)
T PRK04778        274 ELDLDEAEEKNEEIQERIDQLYDI-LEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQ  352 (569)
T ss_pred             hcChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHH
Confidence            110    11222222222222211 1111111111 2222222333344455555 55566555555          444


Q ss_pred             HHHHHHHHhhhcccchhH---HHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 004913          524 LSKRYEELEAKSKADIKV---LVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLN  600 (724)
Q Consensus       524 l~k~~~elEakskad~Kv---LvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~  600 (724)
                      +.++..+++...+.-.+.   -......+.....++.++++...++..++...|+.=+.....++.--.++-...+-++.
T Consensus       353 lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr  432 (569)
T PRK04778        353 LEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKR  432 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555554444311110   01112344455555555566666666665555554443333333333333334444555


Q ss_pred             HHhhhcccccccccCceecccCChhhHHHhhcccchhHHHHHHH
Q 004913          601 RFQACNANLYAEEEDNVILESSSAADALALLTSSDDQISLLITE  644 (724)
Q Consensus       601 rLqEC~~~~~~ee~~~~~~~~ss~~da~dlL~tsDnrI~lLlaE  644 (724)
                      +++..++.-+             |.+-++++.+..++|.-|-.+
T Consensus       433 ~l~k~~lpgi-------------p~~y~~~~~~~~~~i~~l~~~  463 (569)
T PRK04778        433 YLEKSNLPGL-------------PEDYLEMFFEVSDEIEALAEE  463 (569)
T ss_pred             HHHHcCCCCC-------------cHHHHHHHHHHHHHHHHHHHH
Confidence            5555555433             777888888888888766554

>TIGR00606 rad50 rad50

Probab=95.22  E-value=1.9  Score=54.46  Aligned_cols=20  Identities=10%  Similarity=0.146  Sum_probs=12.1

Q ss_pred             hHHHHHHHHHHHHhhHHHHH
Q 004913          673 DNELREVIADILVDNAKLRK  692 (724)
Q Consensus       673 d~elrk~lad~~idna~LRk  692 (724)
                      .+-.|+++....|||+++|-
T Consensus      1147 ~~~w~~~~~~~~~~~i~~~~ 1166 (1311)
T TIGR00606      1147 RDLWRSTYRGQDIEYIEIRS 1166 (1311)
T ss_pred             HHHHHHHcCccHHHHhhcCC
Confidence            33445556666777777743

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK09039 hypothetical protein; Validated

Probab=95.19  E-value=1.2  Score=48.78  Aligned_cols=180  Identities=12%  Similarity=0.144  Sum_probs=98.6

Q ss_pred             hHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHH
Q 004913          428 TVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKD  507 (724)
Q Consensus       428 avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e  507 (724)
                      -+.=||..-|..++.||+....+-.+ |=..+--||.+-..+|=.+.+++..+...+..-.       ..+...+...+.
T Consensus        39 ~~q~fLs~~i~~~~~eL~~L~~qIa~-L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~-------~Le~~~~~~~~~  110 (343)
T PRK09039         39 VAQFFLSREISGKDSALDRLNSQIAE-LADLLSLERQGNQDLQDSVANLRASLSAAEAERS-------RLQALLAELAGA  110 (343)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhhh
Confidence            34456666666666666666655544 4444444577777766666666665543222111       111111111111


Q ss_pred             H-hHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHH
Q 004913          508 K-NVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKT  586 (724)
Q Consensus       508 ~-~~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~  586 (724)
                      . ++...+...++.|..+...+.|    +..++..|-.||-.||.+...|..+|..+-....+...-|..=+++-+.+.+
T Consensus       111 ~~~~~~~~~~l~~~L~~~k~~~se----~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~  186 (343)
T PRK09039        111 GAAAEGRAGELAQELDSEKQVSAR----ALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALA  186 (343)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 1222333333444444443332    4567888899999999999999999888887777777777666666666654


Q ss_pred             HHH-HHHHHHHHHHHHHhhhccc---ccccccCceecc
Q 004913          587 VRE-KLLHECRILLNRFQACNAN---LYAEEEDNVILE  620 (724)
Q Consensus       587 ar~-kllhec~iL~~rLqEC~~~---~~~ee~~~~~~~  620 (724)
                      .+. .|-.=+.-+..||++|--+   +-++ +|.+++.
T Consensus       187 ~~~~~l~~~~~~~~~~l~~~~~~~~~iri~-g~~~~~~  223 (343)
T PRK09039        187 QRVQELNRYRSEFFGRLREILGDREGIRIV-GDRFVFQ  223 (343)
T ss_pred             HHHHHHHHhHHHHHHHHHHHhCCCCCcEEE-CCEEEec
Confidence            423 2333344455666765544   2333 4545443

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=95.18  E-value=2.5  Score=55.45  Aligned_cols=46  Identities=20%  Similarity=0.248  Sum_probs=35.9

Q ss_pred             HHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 004913          560 LSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQAC  605 (724)
Q Consensus       560 l~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC  605 (724)
                      ..+.-..+.+++.-|..||...+.+.-+|++|-+|+..|..||.+-
T Consensus      1099 i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1099 IKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444566667778888888888899999999999999998876

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=94.98  E-value=2.9  Score=48.46  Aligned_cols=150  Identities=19%  Similarity=0.294  Sum_probs=83.0

Q ss_pred             HhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHH---HHHHHHH
Q 004913          409 LVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQ---KSLEMEW  485 (724)
Q Consensus       409 l~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~---k~~e~E~  485 (724)
                      +...+...++|-.-|..|+..|.|.....+.++..|+.++..+++.....--. +++++.-..+++..|.   ++.+++.
T Consensus       284 ~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l-~~sY~l~~~e~~~~~~lekeL~~Le~  362 (569)
T PRK04778        284 NEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRV-KQSYTLNESELESVRQLEKQLESLEK  362 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHccccCchhHHHHHHHHHHHHHHHH
Confidence            33344556777788889999999999999999999999888877665544333 4443322343333332   2222222


Q ss_pred             HhccccCCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHH
Q 004913          486 KLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLN  565 (724)
Q Consensus       486 ~lks~~~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~  565 (724)
                      .++...           ....++..  ....++++++.+.++.++++..    ..-+...|..||....+.++.|.++-+
T Consensus       363 ~~~~~~-----------~~i~~~~~--~ysel~e~leel~e~leeie~e----q~ei~e~l~~Lrk~E~eAr~kL~~~~~  425 (569)
T PRK04778        363 QYDEIT-----------ERIAEQEI--AYSELQEELEEILKQLEEIEKE----QEKLSEMLQGLRKDELEAREKLERYRN  425 (569)
T ss_pred             HHHHHH-----------HHHHcCCC--CHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222110           00111110  1333444444444444444432    444556666777777777777776666


Q ss_pred             hHHHHHHHHHH
Q 004913          566 EKSKTEELLQQ  576 (724)
Q Consensus       566 eK~e~E~~l~~  576 (724)
                      ...++.+.+.+
T Consensus       426 ~L~~ikr~l~k  436 (569)
T PRK04778        426 KLHEIKRYLEK  436 (569)
T ss_pred             HHHHHHHHHHH
Confidence            65555555543

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=94.95  E-value=2.9  Score=52.31  Aligned_cols=81  Identities=20%  Similarity=0.152  Sum_probs=41.3

Q ss_pred             HHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHH
Q 004913          453 ETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEEL  531 (724)
Q Consensus       453 e~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~el  531 (724)
                      ++||+-+-.=|++-+-++=-||+++..+.+-+.....-++---.+.....-+.+-.. +.+++.++.+-+-+..++..+|
T Consensus      1545 ~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL 1624 (1758)
T KOG0994|consen 1545 ENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGEL 1624 (1758)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455554444467777777777777777776666555443221111121122222222 4445555555555555555555


Q ss_pred             hh
Q 004913          532 EA  533 (724)
Q Consensus       532 Ea  533 (724)
                      |.
T Consensus      1625 ~~ 1626 (1758)
T KOG0994|consen 1625 ET 1626 (1758)
T ss_pred             HH
Confidence            53

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=94.91  E-value=2.8  Score=42.84  Aligned_cols=146  Identities=18%  Similarity=0.311  Sum_probs=78.5

Q ss_pred             HhHHHHHHHHHHhhh-------hcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhh
Q 004913          398 LSRVLLTMERRLVTA-------KTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQ  470 (724)
Q Consensus       398 l~rvl~t~~~rl~~a-------ktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mq  470 (724)
                      =|++|..+|.|..-|       .+|+-.||++-|.|+-|=.-...|.++-+.+++....+....|+.             
T Consensus        34 ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k-------------  100 (194)
T PF15619_consen   34 ENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLK-------------  100 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence            378999999996554       589999999999999875444444444444444333332222221             


Q ss_pred             hcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHH
Q 004913          471 WDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFL  549 (724)
Q Consensus       471 wdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsL  549 (724)
                           ++.++.-    |+..-.++         -..|.+ +.++|..++..++.--++..+||.+....-|-..+++.+-
T Consensus       101 -----~~~~l~~----L~~L~~dk---------nL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e  162 (194)
T PF15619_consen  101 -----TKDELKH----LKKLSEDK---------NLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASE  162 (194)
T ss_pred             -----HHHHHHH----HHHHHHcC---------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence                 1111111    11111111         112233 5556666666666666666666655555555555555555


Q ss_pred             hhhhHHHHHHHHHHHHhHHHHHHHH
Q 004913          550 RSSQIGLKQELSQMLNEKSKTEELL  574 (724)
Q Consensus       550 R~s~~~lk~el~~~~~eK~e~E~~l  574 (724)
                      +..+.+++.++..+..+-..+...|
T Consensus       163 ~kK~~~~~~~~~~l~~ei~~L~~kl  187 (194)
T PF15619_consen  163 KKKHKEAQEEVKSLQEEIQRLNQKL  187 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555544444443

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=94.89  E-value=5.1  Score=52.77  Aligned_cols=130  Identities=25%  Similarity=0.299  Sum_probs=59.4

Q ss_pred             hhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHH--HHHHHHhhHhhhhhhhcH
Q 004913          396 HKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETL--QQAILSERERLTQMQWDM  473 (724)
Q Consensus       396 ~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~l--qQa~l~ErEr~t~mqwdm  473 (724)
                      .||++-=.-+|.++....+|....=..+|+-...+.=|..-|.|||+.|+..++...+.-  ...+-.  |- .-+|=.+
T Consensus       981 ~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~--el-~~~~e~~ 1057 (1930)
T KOG0161|consen  981 SKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEG--EL-KDLQESI 1057 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-HHhhhHH
Confidence            344444444555555555555555555555555555566666666666665544333322  111111  11 2223344


Q ss_pred             HHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 004913          474 EELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKS  535 (724)
Q Consensus       474 eelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEaks  535 (724)
                      +++-.+-.+++..|+..+       .+..++..+.+ ....+..+++++..|+.++.+++..-
T Consensus      1058 ~~~~~~~~el~~~l~kke-------~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~l 1113 (1930)
T KOG0161|consen 1058 EELKKQKEELDNQLKKKE-------SELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEEL 1113 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444445544444442       22233333333 33344444555555555544444433

>PRK04863 mukB cell division protein MukB; Provisional

Probab=94.84  E-value=4  Score=52.68  Aligned_cols=100  Identities=20%  Similarity=0.231  Sum_probs=75.0

Q ss_pred             EEecccchhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhh
Q 004913          388 LVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLT  467 (724)
Q Consensus       388 ~vlp~d~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t  467 (724)
                      +.=|.+-|..+-.++. ...|...|+..+++.=.+|..-..+-..|..+++.||.+++..++.....-  ..+.-...+.
T Consensus       275 ~r~~eERR~liEEAag-~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e--e~lr~q~ei~  351 (1486)
T PRK04863        275 MRHANERRVHLEEALE-LRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQ--TALRQQEKIE  351 (1486)
T ss_pred             hhCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence            4556777777777754 558888888888887777777777779999999999999998877644332  2222256677


Q ss_pred             hhhhcHHHHHHHHHHHHHHhccc
Q 004913          468 QMQWDMEELRQKSLEMEWKLKSK  490 (724)
Q Consensus       468 ~mqwdmeelr~k~~e~E~~lks~  490 (724)
                      .++.++++|..+..+.+..+...
T Consensus       352 ~l~~~LeELee~Lee~eeeLeel  374 (1486)
T PRK04863        352 RYQADLEELEERLEEQNEVVEEA  374 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888877655

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.64  E-value=1.1  Score=53.88  Aligned_cols=35  Identities=20%  Similarity=0.172  Sum_probs=16.1

Q ss_pred             HHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCC
Q 004913          460 LSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGN  494 (724)
Q Consensus       460 l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~  494 (724)
                      +-+.++-+|+|-+++-|--|.++++.+|+--.-+.
T Consensus       433 v~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~  467 (1118)
T KOG1029|consen  433 VYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDI  467 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheecc
Confidence            33444444444444444444444444444443333

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=94.61  E-value=4.5  Score=42.59  Aligned_cols=38  Identities=21%  Similarity=0.371  Sum_probs=22.5

Q ss_pred             HHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhh
Q 004913          403 LTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDL  440 (724)
Q Consensus       403 ~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDl  440 (724)
                      ..|+--+.+++.+.+|+=.|+..+.+.+.-|-.-+..|
T Consensus        71 a~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~l  108 (312)
T PF00038_consen   71 ARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESL  108 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34555566677777777777777755555444433333

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=94.49  E-value=3.7  Score=42.49  Aligned_cols=84  Identities=23%  Similarity=0.351  Sum_probs=42.2

Q ss_pred             HHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhH--------------------HHHHHHHHHhhH
Q 004913          405 MERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSK--------------------ETLQQAILSERE  464 (724)
Q Consensus       405 ~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~k--------------------e~lqQa~l~ErE  464 (724)
                      .+.|+..+++..++.-.|+.+..+==.=|..|+..||.+|+.+-.+..                    ..|++-...-=+
T Consensus        13 ~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~ee   92 (237)
T PF00261_consen   13 AEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEE   92 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            334444444444444444444444444445555555544444433322                    223333333346


Q ss_pred             hhhhhhhcHHHHHHHHHHHHHHhc
Q 004913          465 RLTQMQWDMEELRQKSLEMEWKLK  488 (724)
Q Consensus       465 r~t~mqwdmeelr~k~~e~E~~lk  488 (724)
                      ||.++.+.+.+.+..+.+.+.++.
T Consensus        93 ri~~lE~~l~ea~~~~ee~e~k~~  116 (237)
T PF00261_consen   93 RIEELEQQLKEAKRRAEEAERKYE  116 (237)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677777777776666666666654

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PHA02562 46 endonuclease subunit; Provisional

Probab=94.38  E-value=1.5  Score=49.51  Aligned_cols=45  Identities=18%  Similarity=0.227  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhcc---cchhHHHHHHHHHhhhhHHHHHHH
Q 004913          516 ATKEQLENLSKRYEELEAKSK---ADIKVLVKEVKFLRSSQIGLKQEL  560 (724)
Q Consensus       516 ~~~~~~e~l~k~~~elEaksk---ad~KvLvKEVKsLR~s~~~lk~el  560 (724)
                      ...+....|+.+.+++|....   .+.+.|..+.+.++....++.+++
T Consensus       355 ~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~  402 (562)
T PHA02562        355 TLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEK  402 (562)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444555544422   123344444444444444444443

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=94.36  E-value=3.1  Score=43.00  Aligned_cols=24  Identities=21%  Similarity=0.446  Sum_probs=12.9

Q ss_pred             HHHHHHHHhhhhcchHHHHHHhhh
Q 004913          402 LLTMERRLVTAKTDMEDLITRLNQ  425 (724)
Q Consensus       402 l~t~~~rl~~aktdmEDLiaRLnq  425 (724)
                      +.+|++|+.....+.+..-.||..
T Consensus        38 ~~~l~rri~~lE~~le~~eerL~~   61 (237)
T PF00261_consen   38 VASLQRRIQLLEEELERAEERLEE   61 (237)
T ss_dssp             HHHHHHHHHHHHCCCHHHHCCCCH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHH
Confidence            455666666655555554444433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=94.34  E-value=4  Score=47.80  Aligned_cols=171  Identities=19%  Similarity=0.243  Sum_probs=112.5

Q ss_pred             hHHHHHHhhhhhhHHHHHHhhhhhhHHHHH---HHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccC
Q 004913          416 MEDLITRLNQEMTVKDYLMTKVKDLEVELE---TTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQD  492 (724)
Q Consensus       416 mEDLiaRLnqe~avk~fL~tKvkDlE~eLe---~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~  492 (724)
                      +.+|-+||++...+   +.++..+|+...+   .+-+ ..+..-+++-.=||+.--||=|.--++    .+...+++   
T Consensus       219 ~~Elk~~l~~~~~~---i~~~ie~l~~~n~~l~e~i~-e~ek~~~~~eslre~~~~L~~D~nK~~----~y~~~~~~---  287 (581)
T KOG0995|consen  219 EDELKHRLEKYFTS---IANEIEDLKKTNRELEEMIN-EREKDPGKEESLREKKARLQDDVNKFQ----AYVSQMKS---  287 (581)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHhcCcchHHHHHHHHHHHHhHHHHHH----HHHHHHHh---
Confidence            45788888876553   2334444433222   2222 333333443333666666665554333    33333332   


Q ss_pred             CCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHH
Q 004913          493 GNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTE  571 (724)
Q Consensus       493 ~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E  571 (724)
                             .++...+..+ +..|+....++.|.|+++.++|-.+..-+ ++=+++|+-.+.-..+|+++|..+-.++..+-
T Consensus       288 -------k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q-~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~  359 (581)
T KOG0995|consen  288 -------KKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ-GISGEDVERMNLERNKLKRELNKIQSELDRLS  359 (581)
T ss_pred             -------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   2345555566 77788888889999999999888888777 78899999999999999999998888887777


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 004913          572 ELLQQERQTHNHMKTVREKLLHECRILLNRFQAC  605 (724)
Q Consensus       572 ~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC  605 (724)
                      +-+=..+-..+.-.-+-.+.+-+|.-|..||.=-
T Consensus       360 k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~  393 (581)
T KOG0995|consen  360 KEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLG  393 (581)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6665555444555567778888898888887543

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=94.09  E-value=4.5  Score=42.83  Aligned_cols=153  Identities=19%  Similarity=0.270  Sum_probs=100.6

Q ss_pred             hhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHH
Q 004913          438 KDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDA  516 (724)
Q Consensus       438 kDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~  516 (724)
                      +.+.+++++. .+..+++++++-+=+.-+.+.+=++.++|.+.-.-|.++....+.+   +  ...+..|.+ +.++...
T Consensus        34 ~k~~~e~e~~-~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~---e--~~aL~~E~~~ak~r~~~  107 (239)
T COG1579          34 KKAKAELEAL-NKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDER---E--LRALNIEIQIAKERINS  107 (239)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH---H--HHHHHHHHHHHHHHHHH
Confidence            3444555443 4556777777777677778888899999999888888884442221   1  133444555 5555555


Q ss_pred             HHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 004913          517 TKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECR  596 (724)
Q Consensus       517 ~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~  596 (724)
                      ++.++..|..++.+++    .+++.|...+..++++..++++.++..+....+.=..+..  ++.+.......+|+.+..
T Consensus       108 le~el~~l~~~~~~l~----~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~--~~~~L~~~l~~ell~~ye  181 (239)
T COG1579         108 LEDELAELMEEIEKLE----KEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSS--KREELKEKLDPELLSEYE  181 (239)
T ss_pred             HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCHHHHHHHH
Confidence            5555555555555554    4577788888888889999999999888887774333333  334445556778888888


Q ss_pred             HHHHHH
Q 004913          597 ILLNRF  602 (724)
Q Consensus       597 iL~~rL  602 (724)
                      -+++--
T Consensus       182 ri~~~~  187 (239)
T COG1579         182 RIRKNK  187 (239)
T ss_pred             HHHhcC
Confidence            777654

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.03  E-value=5.1  Score=50.27  Aligned_cols=94  Identities=24%  Similarity=0.316  Sum_probs=66.4

Q ss_pred             cchhhHhHHHHHHHHHHhhhhcchHHHHHHhhhh----hhHH---HHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHh
Q 004913          393 DQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQE----MTVK---DYLMTKVKDLEVELETTKQKSKETLQQAILSERER  465 (724)
Q Consensus       393 d~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe----~avk---~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr  465 (724)
                      +.-.|..++=.+++.|..-+|-.-+++-.++++-    +.++   .+++.|.+.||.+++..+.+ +..++-|.-.=|.-
T Consensus       363 ~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~-~~e~e~~pe~~~~~  441 (1293)
T KOG0996|consen  363 EEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRK-KSELEKAPEKARIE  441 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHhCchhhHhH
Confidence            4445666666677777777777777777777643    3333   58899999999999998754 56778887777888


Q ss_pred             hhhhhhcHHHHHHHHHHHHHHh
Q 004913          466 LTQMQWDMEELRQKSLEMEWKL  487 (724)
Q Consensus       466 ~t~mqwdmeelr~k~~e~E~~l  487 (724)
                      |..+|=+.+.|-....--+.+|
T Consensus       442 i~~~~~ei~~L~~~~~~~~~~l  463 (1293)
T KOG0996|consen  442 IQKCQTEIEQLEELLEKEEREL  463 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            8888877777655444444433

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=94.02  E-value=8.3  Score=43.97  Aligned_cols=157  Identities=21%  Similarity=0.245  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHhhHhhhh---------------hhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHhHHHHHHH
Q 004913          452 KETLQQAILSERERLTQ---------------MQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDA  516 (724)
Q Consensus       452 ke~lqQa~l~ErEr~t~---------------mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~qel~~  516 (724)
                      |-.|+|...-|||-|-+               =|-.+|.||+..-+||.+|.-+|           .+.. |.|.+.||.
T Consensus       145 k~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEq-----------Ealv-N~LwKrmdk  212 (552)
T KOG2129|consen  145 KLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQ-----------EALV-NSLWKRMDK  212 (552)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHH-----------HHHH-HHHHHHHHH
Confidence            33467777777765432               15556777777777777765551           1111 226677777


Q ss_pred             HHHHHHHHHHHHHHH--------------------hhhcccchhHHHHHHHHHhhhhHHH----HHHHHHHHHhHHHHHH
Q 004913          517 TKEQLENLSKRYEEL--------------------EAKSKADIKVLVKEVKFLRSSQIGL----KQELSQMLNEKSKTEE  572 (724)
Q Consensus       517 ~~~~~e~l~k~~~el--------------------Eakskad~KvLvKEVKsLR~s~~~l----k~el~~~~~eK~e~E~  572 (724)
                      ..+.-..|++++++=                    -+.-++-+..|--||-.||+....-    ..++-||..|+...+.
T Consensus       213 Le~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~re  292 (552)
T KOG2129|consen  213 LEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHRE  292 (552)
T ss_pred             HHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            777777777776531                    1223456677888998887765443    3445556655554433


Q ss_pred             HHHHHHHhhhhH---HHHHHHHHHHHHHHHHHHhhhcccccccccCceecc
Q 004913          573 LLQQERQTHNHM---KTVREKLLHECRILLNRFQACNANLYAEEEDNVILE  620 (724)
Q Consensus       573 ~l~~Er~~~e~~---~~ar~kllhec~iL~~rLqEC~~~~~~ee~~~~~~~  620 (724)
                      -+-++..+-.+.   +.|.-..+.|-+-+..-+.|--+|..+.-+|.+-|-
T Consensus       293 en~rlQrkL~~e~erRealcr~lsEsesslemdeery~Ne~~~~g~s~~Va  343 (552)
T KOG2129|consen  293 ENERLQRKLINELERREALCRMLSESESSLEMDEERYLNEFVDFGDSVEVA  343 (552)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhccCCceeee
Confidence            322222221111   123345566666666666676677766667766543

>PRK03918 chromosome segregation protein; Provisional

Probab=93.92  E-value=7.8  Score=46.33  Aligned_cols=10  Identities=30%  Similarity=0.318  Sum_probs=4.3

Q ss_pred             HHHHHHHHHh
Q 004913          594 ECRILLNRFQ  603 (724)
Q Consensus       594 ec~iL~~rLq  603 (724)
                      ++..|+..+.
T Consensus       373 ~l~~l~~~l~  382 (880)
T PRK03918        373 ELERLKKRLT  382 (880)
T ss_pred             HHHHHHHHhc
Confidence            4444444433

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.82  E-value=15  Score=43.28  Aligned_cols=240  Identities=26%  Similarity=0.293  Sum_probs=131.5

Q ss_pred             ccchhhHhHHHHHHHHHHhhhhcchHHHHHH---------------------hhhhhhHH-HHHHhhhhhhHHHHHHHHH
Q 004913          392 LDQRHKLSRVLLTMERRLVTAKTDMEDLITR---------------------LNQEMTVK-DYLMTKVKDLEVELETTKQ  449 (724)
Q Consensus       392 ~d~r~kl~rvl~t~~~rl~~aktdmEDLiaR---------------------Lnqe~avk-~fL~tKvkDlE~eLe~t~~  449 (724)
                      +++.+-|+.-+.-||.-+..++++|+-+---                     |=||-|.| +|+.-||-+||.||...++
T Consensus        42 LeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~  121 (772)
T KOG0999|consen   42 LEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQ  121 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            4677778888888888888888888766432                     33444554 6999999999999987776


Q ss_pred             hhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHH
Q 004913          450 KSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRY  528 (724)
Q Consensus       450 ~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~  528 (724)
                      .--.     +-.|+|||++.--|.-+--...-.--..|+.+--   .-...-+.+.+|-- |.+|---.++++-+|.+-.
T Consensus       122 el~~-----~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elK---e~KfRE~RllseYSELEEENIsLQKqVs~LR~sQ  193 (772)
T KOG0999|consen  122 ELTN-----VQEENERLEKVHSDLKESNAAVEDQRRRLRDELK---EYKFREARLLSEYSELEEENISLQKQVSNLRQSQ  193 (772)
T ss_pred             HHHH-----HHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhh
Confidence            5433     3457888887544332211111110011111100   00112244444444 5555556677777777777


Q ss_pred             HHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHH-------HHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 004913          529 EELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTE-------ELLQQERQTHNHMKTVREKLLHECRILLNR  601 (724)
Q Consensus       529 ~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E-------~~l~~Er~~~e~~~~ar~kllhec~iL~~r  601 (724)
                      .|+|- .|-++|-|-.||--|-.+..       .+..=|...|       ..|+.||+    .+.|.+|=|   .--+++
T Consensus       194 VEyEg-lkheikRleEe~elln~q~e-------e~~~Lk~IAekQlEEALeTlq~ERe----qk~alkkEL---~q~~n~  258 (772)
T KOG0999|consen  194 VEYEG-LKHEIKRLEEETELLNSQLE-------EAIRLKEIAEKQLEEALETLQQERE----QKNALKKEL---SQYRNA  258 (772)
T ss_pred             hhhhH-HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHH---HHhcch
Confidence            77764 46677777777665544433       3322222222       23455552    334444433   323332


Q ss_pred             Hhhhcc-cccccccCceecccCCh-hh-----------HHHhhc-----ccchhHHHHHHHHhhhhhhhhh
Q 004913          602 FQACNA-NLYAEEEDNVILESSSA-AD-----------ALALLT-----SSDDQISLLITEAQLLAEDSKA  654 (724)
Q Consensus       602 LqEC~~-~~~~ee~~~~~~~~ss~-~d-----------a~dlL~-----tsDnrI~lLlaEaqll~~d~e~  654 (724)
                      =--.+. ++++-=+|+|--|+++| +|           |.|+-|     .||=--.++++|.|-|-+.-.+
T Consensus       259 e~~~~~n~l~~sldgk~~eDga~pn~d~e~eh~~l~kl~~Dl~tel~~p~sDl~sel~iseiqkLkqqL~s  329 (772)
T KOG0999|consen  259 EDISSLNHLLFSLDGKFGEDGAEPNNDPEEEHGALKKLASDLFTELQGPVSDLFSELNISEIQKLKQQLMS  329 (772)
T ss_pred             hhhhhhhhhheecccccccccCCCCCChhhhcchhhhccchhhhhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence            221111 12233344666666655 22           444443     3777788899999998776644

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=93.77  E-value=8.4  Score=44.49  Aligned_cols=107  Identities=17%  Similarity=0.245  Sum_probs=60.1

Q ss_pred             hHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHH---HhhHhhhhhhhcHHHHHHHHHHHHHHhccccC
Q 004913          416 MEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAIL---SERERLTQMQWDMEELRQKSLEMEWKLKSKQD  492 (724)
Q Consensus       416 mEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l---~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~  492 (724)
                      -+.-+-+||.+.....-|-.|+...-.++...+...+.....-+-   .+++.++.++=.+.-+...+.++..+|+.-.+
T Consensus       223 ae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~  302 (522)
T PF05701_consen  223 AEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKE  302 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566677776665555555554444444444433333331111   34566677776677777777777777776655


Q ss_pred             CCCcccchhhhhHHHHh-HHHHHHHHHHHHH
Q 004913          493 GNPHAESMEESTVKDKN-VLQELDATKEQLE  522 (724)
Q Consensus       493 ~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e  522 (724)
                      +-........++..|.+ ...++..+++...
T Consensus       303 E~~~L~~~vesL~~ELe~~K~el~~lke~e~  333 (522)
T PF05701_consen  303 EASSLRASVESLRSELEKEKEELERLKEREK  333 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555556665555 5555555554443

Several sequences in this family are described as being myosin heavy chain-like.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=93.46  E-value=23  Score=42.81  Aligned_cols=208  Identities=18%  Similarity=0.219  Sum_probs=123.8

Q ss_pred             ccchhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhh----HHHHHHhhhh---hhHH---HHHHHHHhhHHHHHHHHHH
Q 004913          392 LDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMT----VKDYLMTKVK---DLEV---ELETTKQKSKETLQQAILS  461 (724)
Q Consensus       392 ~d~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~a----vk~fL~tKvk---DlE~---eLe~t~~~~ke~lqQa~l~  461 (724)
                      .|...+|-+=+..|+..|...+.--+||=..|++.+.    .|.=|..+=+   .|+-   +|.+.||+-|.+|+     
T Consensus       417 ~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~-----  491 (697)
T PF09726_consen  417 PDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQ-----  491 (697)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            3455577777778888888888778888888665444    3333322222   2222   23334444444443     


Q ss_pred             hhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhh---------------hHHHHh-HHHHHHHHHHHHHHHH
Q 004913          462 ERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEES---------------TVKDKN-VLQELDATKEQLENLS  525 (724)
Q Consensus       462 ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s---------------~~~e~~-~~qel~~~~~~~e~l~  525 (724)
                            ++-=-+-|.|++-.+.|..|+.++-.+...|.+-+.               ..+... |..|++..|-++....
T Consensus       492 ------~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~ke  565 (697)
T PF09726_consen  492 ------QLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKE  565 (697)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  333335567777778888887775443333222111               111111 3344444444444433


Q ss_pred             HHHHHHhhh----------cccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 004913          526 KRYEELEAK----------SKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHEC  595 (724)
Q Consensus       526 k~~~elEak----------skad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec  595 (724)
                      ++..++|..          +..|.-+|.-.+-.|+--..+|+.=|+.-=+-|.+|=..|-.=|...|-+....++-=.||
T Consensus       566 e~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei  645 (697)
T PF09726_consen  566 EQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEI  645 (697)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333332          2446667777777777777777777777777777777777777777777888888888899


Q ss_pred             HHHHHHHhhhccccc
Q 004913          596 RILLNRFQACNANLY  610 (724)
Q Consensus       596 ~iL~~rLqEC~~~~~  610 (724)
                      ..|..++-+--.-.+
T Consensus       646 ~~lk~ki~~~~av~p  660 (697)
T PF09726_consen  646 EELKAKIAQLLAVMP  660 (697)
T ss_pred             HHHHHHHHHHHhcCC
Confidence            999999987655444

; GO: 0016021 integral to membrane

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=93.43  E-value=9.3  Score=47.09  Aligned_cols=26  Identities=27%  Similarity=0.285  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHhhhcccc---cccccCce
Q 004913          592 LHECRILLNRFQACNANL---YAEEEDNV  617 (724)
Q Consensus       592 lhec~iL~~rLqEC~~~~---~~ee~~~~  617 (724)
                      |.+.+-++.+|+|.|-.+   |.||=|.+
T Consensus       474 lEalee~~EQL~Esn~ele~DLreEld~~  502 (1243)
T KOG0971|consen  474 LEALEEMNEQLQESNRELELDLREELDMA  502 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445677889999998766   45554443

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=93.38  E-value=11  Score=40.87  Aligned_cols=192  Identities=16%  Similarity=0.211  Sum_probs=100.4

Q ss_pred             HhHHHHHHHHHHhhhhcchHHHHHHhhhh--hhHHHHHHhhhh---hhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhc
Q 004913          398 LSRVLLTMERRLVTAKTDMEDLITRLNQE--MTVKDYLMTKVK---DLEVELETTKQKSKETLQQAILSERERLTQMQWD  472 (724)
Q Consensus       398 l~rvl~t~~~rl~~aktdmEDLiaRLnqe--~avk~fL~tKvk---DlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwd  472 (724)
                      ..-+...|.+++...+.=.+++-+....+  .-+|+|.+.--.   -+...+...|.-++-         +-+-.-..|.
T Consensus        73 y~~~c~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~a~~d~r~~m~~q~~~vK~~aRl---------~aK~~WYeWR  143 (325)
T PF08317_consen   73 YQFSCRELKKYISEGRQIFEEIEEETYESNPPLFREYYTADPDMRLLMDNQFQLVKTYARL---------EAKKMWYEWR  143 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH
Confidence            34567778888887777777776666443  367899775311   122222222222221         1122233566


Q ss_pred             HHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhh
Q 004913          473 MEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRS  551 (724)
Q Consensus       473 meelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~  551 (724)
                      |.=+..=...++.++...+.+........+.+..-.. +......+++++..|++...+++.--+.+.+-|-.|++.+..
T Consensus       144 ~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~  223 (325)
T PF08317_consen  144 MQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKE  223 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHH
Confidence            5555555555555555555444444444444444444 555556666666666666666666555555555555555555


Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 004913          552 SQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQAC  605 (724)
Q Consensus       552 s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC  605 (724)
                      ...++++++.+.-.++.+++.-+       +....-..+++.+++-+...+.+|
T Consensus       224 ~i~~~k~~l~el~~el~~l~~~i-------~~~~~~k~~l~~eI~e~~~~~~~~  270 (325)
T PF08317_consen  224 EIEAKKKELAELQEELEELEEKI-------EELEEQKQELLAEIAEAEKIREEC  270 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55555555554444444443333       223334444555555555555444

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=93.36  E-value=5.1  Score=47.99  Aligned_cols=88  Identities=22%  Similarity=0.166  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccchhHHH---H-HHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHH
Q 004913          513 ELDATKEQLENLSKRYEELEAKSKADIKVLV---K-EVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVR  588 (724)
Q Consensus       513 el~~~~~~~e~l~k~~~elEakskad~KvLv---K-EVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar  588 (724)
                      ++....+.+-+++-..+++|+|.+|.-.-+-   + +-|.=|.-|-++.++-+.+...-.++--.|++-    |++ +||
T Consensus       531 e~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~----Eq~-aar  605 (961)
T KOG4673|consen  531 ELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKK----EQQ-AAR  605 (961)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH----HHH-HHH
Confidence            4455555556666667778888777543321   1 112224445566666666666666666666543    344 555


Q ss_pred             HH--HHHHHHHHHHHHhhh
Q 004913          589 EK--LLHECRILLNRFQAC  605 (724)
Q Consensus       589 ~k--llhec~iL~~rLqEC  605 (724)
                      +.  |-||++-|+.|||+.
T Consensus       606 rEd~~R~Ei~~LqrRlqaa  624 (961)
T KOG4673|consen  606 REDMFRGEIEDLQRRLQAA  624 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            54  558999999999974

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=93.23  E-value=11  Score=45.32  Aligned_cols=69  Identities=29%  Similarity=0.380  Sum_probs=37.3

Q ss_pred             hhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHH---HHHHhh---HhhhhhhhcHHHHHHHHHHHH
Q 004913          411 TAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQ---AILSER---ERLTQMQWDMEELRQKSLEME  484 (724)
Q Consensus       411 ~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQ---a~l~Er---Er~t~mqwdmeelr~k~~e~E  484 (724)
                      +++.--.|-+.||          -.-||-|-.||...||--.|==+|   ..-.||   .-+.+||=+.|+|..|+.++.
T Consensus       411 ~~~~~~~~a~~rL----------E~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~  480 (697)
T PF09726_consen  411 NAQNSEPDAISRL----------EADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLV  480 (697)
T ss_pred             cccccChHHHHHH----------HHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445666654          444566888888888766554444   222233   335565555555555555554


Q ss_pred             HHhcc
Q 004913          485 WKLKS  489 (724)
Q Consensus       485 ~~lks  489 (724)
                      ...+.
T Consensus       481 ~aRq~  485 (697)
T PF09726_consen  481 QARQQ  485 (697)
T ss_pred             HHHHH
Confidence            44433

; GO: 0016021 integral to membrane

>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []

Probab=93.22  E-value=11  Score=45.37  Aligned_cols=158  Identities=22%  Similarity=0.249  Sum_probs=92.7

Q ss_pred             HHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHh---hHhhhhhhhcHHHHHH
Q 004913          402 LLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSE---RERLTQMQWDMEELRQ  478 (724)
Q Consensus       402 l~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~E---rEr~t~mqwdmeelr~  478 (724)
                      |..++.-+...-..-||+..|-.....+.+ |.+-|-|+|.+++.+...-|++++=|+==|   -..|+-++++||+|=+
T Consensus        66 i~~~l~lIe~~v~~ie~~q~r~di~~~~~d-l~e~vsqm~~~vK~~L~~vK~qveiAmE~~EL~~~vlg~l~~EIe~~~~  144 (683)
T PF08580_consen   66 ISRFLDLIEVYVSAIEDLQLREDIANSLFD-LIEEVSQMELDVKKTLISVKKQVEIAMEWEELWNDVLGDLDNEIEECIR  144 (683)
T ss_pred             HHHHHHHHHhhccccccccccccccccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            344444443332234444444443333333 667788888899999999999999887331   3577889999999999


Q ss_pred             HHHHHHHH-hccccCCCCcccchhhhhHHHH-------------------------h---HHHHHHHHHHHHHHHHHHHH
Q 004913          479 KSLEMEWK-LKSKQDGNPHAESMEESTVKDK-------------------------N---VLQELDATKEQLENLSKRYE  529 (724)
Q Consensus       479 k~~e~E~~-lks~~~~~~~~e~~~~s~~~e~-------------------------~---~~qel~~~~~~~e~l~k~~~  529 (724)
                      .|+|||++ .++-- ....-..+++.|+++.                         .   |...|.=++.=|+-|=.+.+
T Consensus       145 ~vfemeE~R~~Sp~-~~~lp~~~Le~Ive~~~~~~~~~~~~~~lPtF~~~Desl~~~ll~L~arm~PLraSLdfLP~Ri~  223 (683)
T PF08580_consen  145 LVFEMEEKRHSSPV-RHGLPIFELETIVEEMPSSTNSSNKRFSLPTFSPQDESLYSSLLALFARMQPLRASLDFLPMRIE  223 (683)
T ss_pred             HHHHHHHHHccCCc-ccCCCcccHHHHHHhccccCCCCcCCcCCCCCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            99999864 44431 1112223334444444                         1   33334445555666667777


Q ss_pred             HHhhhcccc-----------hhHHHHHHHHHhhhhHHHHHHHH
Q 004913          530 ELEAKSKAD-----------IKVLVKEVKFLRSSQIGLKQELS  561 (724)
Q Consensus       530 elEakskad-----------~KvLvKEVKsLR~s~~~lk~el~  561 (724)
                      +|+.-+..=           .+.|.+..|.|.+.-.+||+||-
T Consensus       224 ~F~~ra~~~fp~a~e~L~~r~~~L~~k~~~L~~e~~~LK~ELi  266 (683)
T PF08580_consen  224 EFQSRAESIFPSACEELEDRYERLEKKWKKLEKEAESLKKELI  266 (683)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            776544221           23455556666666666666654

KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=93.22  E-value=3.3  Score=48.39  Aligned_cols=202  Identities=19%  Similarity=0.274  Sum_probs=127.9

Q ss_pred             HHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhh----------HHHHHHHHHHhhHhhhhhh
Q 004913          401 VLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKS----------KETLQQAILSERERLTQMQ  470 (724)
Q Consensus       401 vl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~----------ke~lqQa~l~ErEr~t~mq  470 (724)
                      -+.-.++....+.-+.-|...|||+-.|--.++..+.|.||+++...+..+          |..++|+++.=.+.-.+.|
T Consensus       128 ~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q  207 (546)
T KOG0977|consen  128 KLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQ  207 (546)
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            333444556667777788899999999999999999999999998877654          6677777777555566666


Q ss_pred             hcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh--HHHHHHHHHHHHHHHHHHH-HHHhhhcccchhHHH----
Q 004913          471 WDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN--VLQELDATKEQLENLSKRY-EELEAKSKADIKVLV----  543 (724)
Q Consensus       471 wdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~--~~qel~~~~~~~e~l~k~~-~elEakskad~KvLv----  543 (724)
                      ==+|||.-.-...+..|..++.- ...+.+ .....+.+  |.+-|..+|.|+|.-.+.. +++|---+..+--+-    
T Consensus       208 ~Lleel~f~~~~h~~eI~e~~~~-~~rd~t-~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~  285 (546)
T KOG0977|consen  208 TLLEELAFLKRIHKQEIEEERRK-ARRDTT-ADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAE  285 (546)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHH-Hhhccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhc
Confidence            66666666665555555444211 111121 33444444  7778888888888765443 344443333333222    


Q ss_pred             ----------HHHHHHhhhhHHHHHHHHH-------HHHhHHHHHHHHHHHHHhhhhHHHHH----HHHHHHHHHHHHHH
Q 004913          544 ----------KEVKFLRSSQIGLKQELSQ-------MLNEKSKTEELLQQERQTHNHMKTVR----EKLLHECRILLNRF  602 (724)
Q Consensus       544 ----------KEVKsLR~s~~~lk~el~~-------~~~eK~e~E~~l~~Er~~~e~~~~ar----~kllhec~iL~~rL  602 (724)
                                -||+++|+...+|...|+.       ..+.-.+++..|-.|+..-|.+.+-+    +++=.||..|-.-|
T Consensus       286 ~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~El  365 (546)
T KOG0977|consen  286 RANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVEL  365 (546)
T ss_pred             cccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence                      6788877777777766654       44555566777777777666665444    34445566655555


Q ss_pred             hh
Q 004913          603 QA  604 (724)
Q Consensus       603 qE  604 (724)
                      |.
T Consensus       366 q~  367 (546)
T KOG0977|consen  366 QK  367 (546)
T ss_pred             HH
Confidence            53

>PHA02562 46 endonuclease subunit; Provisional

Probab=93.12  E-value=19  Score=40.85  Aligned_cols=13  Identities=31%  Similarity=0.348  Sum_probs=5.5

Q ss_pred             chHHHHHHHHHHH
Q 004913          672 TDNELREVIADIL  684 (724)
Q Consensus       672 ~d~elrk~lad~~  684 (724)
                      .|.+.+..+.++|
T Consensus       510 ld~~~~~~~~~~l  522 (562)
T PHA02562        510 LDAEGTKALLSIL  522 (562)
T ss_pred             cchhHHHHHHHHH
Confidence            3444444444433

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=93.08  E-value=33  Score=43.57  Aligned_cols=29  Identities=21%  Similarity=0.357  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 004913          674 NELREVIADILVDNAKLRKQVNSVLRRAL  702 (724)
Q Consensus       674 ~elrk~lad~~idna~LRkq~Nsv~r~al  702 (724)
                      +++...+-|++..-.+++++++.-+.+.-
T Consensus       898 ~~~~~~~~~~~~~~~~l~~~l~~~~~~f~  926 (1201)
T PF12128_consen  898 DERLRDLEDLLQRRKRLREELKKAVERFK  926 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777888888889999999988777543

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=92.99  E-value=2.1  Score=46.78  Aligned_cols=177  Identities=20%  Similarity=0.295  Sum_probs=112.9

Q ss_pred             HHHHhhhhhhHH-HHHHhhhhhhHHHHHHHHHhhHHHHHHHHHH-------------hhHhhhhhhhc------------
Q 004913          419 LITRLNQEMTVK-DYLMTKVKDLEVELETTKQKSKETLQQAILS-------------ERERLTQMQWD------------  472 (724)
Q Consensus       419 LiaRLnqe~avk-~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~-------------ErEr~t~mqwd------------  472 (724)
                      |.||+.|..--+ ..|+.++..||.+|......- ..|+.-+..             |-+.-+...|+            
T Consensus        80 laA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v-~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~  158 (306)
T PF04849_consen   80 LAARIGQSLLEQNQDLSERNEALEEQLGAALEQV-EQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQK  158 (306)
T ss_pred             HHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCcHhhhcccccCCCcccccccccccccc
Confidence            567776665333 467778888888776554432 223333322             12222233443            


Q ss_pred             ---HHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh---H---HHHHHHHHHHHHHHHHHHHHHhhhcccchhHHH
Q 004913          473 ---MEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN---V---LQELDATKEQLENLSKRYEELEAKSKADIKVLV  543 (724)
Q Consensus       473 ---meelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~---~---~qel~~~~~~~e~l~k~~~elEakskad~KvLv  543 (724)
                         .+-|++|+...|..-+....+-.+......+ .+|++   +   .+++..+..++..|+++...    -.-+-.---
T Consensus       159 ~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~-~EekEqqLv~dcv~QL~~An~qia~LseELa~----k~Ee~~rQQ  233 (306)
T PF04849_consen  159 CIQLEALQEKLKSLEEENEQLRSEASQLKTETDT-YEEKEQQLVLDCVKQLSEANQQIASLSEELAR----KTEENRRQQ  233 (306)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhh-ccHHHHHHHHHHHHHhhhcchhHHHHHHHHHH----HHHHHHHHH
Confidence               4788888888876555443333222221111 12222   2   36778888888877765532    223344556


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccc
Q 004913          544 KEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNAN  608 (724)
Q Consensus       544 KEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~  608 (724)
                      .||=+|.++...|++.+.+++.|+.++-..|...|       .+...|--|..-|+.|-.||-.-
T Consensus       234 EEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~sk-------e~Q~~L~aEL~elqdkY~E~~~m  291 (306)
T PF04849_consen  234 EEITSLLSQIVDLQQRCKQLAAENEELQQHLQASK-------ESQRQLQAELQELQDKYAECMAM  291 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999877       45556777888899999999643

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=92.94  E-value=13  Score=40.86  Aligned_cols=167  Identities=19%  Similarity=0.260  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHhhhhcchHHHHHHhhhhh-hHHHHHHhhhhhhHHHH-------HHHHHhhHHHHHHHHHHhhHhh-hhhh
Q 004913          400 RVLLTMERRLVTAKTDMEDLITRLNQEM-TVKDYLMTKVKDLEVEL-------ETTKQKSKETLQQAILSERERL-TQMQ  470 (724)
Q Consensus       400 rvl~t~~~rl~~aktdmEDLiaRLnqe~-avk~fL~tKvkDlE~eL-------e~t~~~~ke~lqQa~l~ErEr~-t~mq  470 (724)
                      ++-++|+++|.+..++.-+|-..|-+|- .+=.=|++|+.+||.+.       +..+. -|-.|+-+.-.|.|-| .-+|
T Consensus       106 ~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~-EKVdlEn~LE~EQE~lvN~L~  184 (310)
T PF09755_consen  106 FLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRR-EKVDLENTLEQEQEALVNRLW  184 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHH
Confidence            4567899999999999888888887753 44566778888887654       33222 3334677777777754 5566


Q ss_pred             hcHHHHHHHHHHHHHHhccc-cCCCCcccch--------hhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchh
Q 004913          471 WDMEELRQKSLEMEWKLKSK-QDGNPHAESM--------EESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIK  540 (724)
Q Consensus       471 wdmeelr~k~~e~E~~lks~-~~~~~~~e~~--------~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~K  540 (724)
                      =-|+.|...---++.+|..- .+..+..++.        .+.....-. |.+|+...++|+-..++++       .+.+.
T Consensus       185 Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~-------~~k~~  257 (310)
T PF09755_consen  185 KQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEH-------SEKMA  257 (310)
T ss_pred             HHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence            67888888777777777643 2222222111        111111112 5555555555555555544       44555


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHH
Q 004913          541 VLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELL  574 (724)
Q Consensus       541 vLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l  574 (724)
                      ..+.|.|.+|.-+..|+.-|..-+..+-.+-+-|
T Consensus       258 ~~~~eek~ireEN~rLqr~L~~E~erreal~R~l  291 (310)
T PF09755_consen  258 QYLQEEKEIREENRRLQRKLQREVERREALCRHL  291 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667778888877777766665555544444433

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=92.80  E-value=2.5  Score=47.43  Aligned_cols=35  Identities=11%  Similarity=0.288  Sum_probs=18.1

Q ss_pred             EecccchhhHhHHHHHHHHHHhhhhcchHHHHHHhh
Q 004913          389 VIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLN  424 (724)
Q Consensus       389 vlp~d~r~kl~rvl~t~~~rl~~aktdmEDLiaRLn  424 (724)
                      ++|..+ ..+..-+..+++++.+++++.-++-+++.
T Consensus       194 ~~~~~~-~~~~~~l~~l~~~l~~~~~~l~~~~a~~~  228 (498)
T TIGR03007       194 ILPDQE-GDYYSEISEAQEELEAARLELNEAIAQRD  228 (498)
T ss_pred             cCccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344333 33344456666666666666555555544

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=92.69  E-value=31  Score=42.29  Aligned_cols=198  Identities=21%  Similarity=0.272  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhh
Q 004913          473 MEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRS  551 (724)
Q Consensus       473 meelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~  551 (724)
                      ++++..+..+.+..+..+ ......+........+.+ +.+++..++++|+.+.++..++        .-++.++++.+.
T Consensus       656 l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~el~~~~~~l~~~~~~~~~~--------~~~~~~l~~~~~  726 (908)
T COG0419         656 LEELEEKVEELEAEIRRE-LQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEI--------EQLIEELESRKA  726 (908)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH
Confidence            666777777666666641 000000000011111111 4444444444444444444442        257777888888


Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHH----HHHHHHHHhhhccccc---ccccCc---e-ecc
Q 004913          552 SQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHE----CRILLNRFQACNANLY---AEEEDN---V-ILE  620 (724)
Q Consensus       552 s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhe----c~iL~~rLqEC~~~~~---~ee~~~---~-~~~  620 (724)
                      ....+++++..+-+....+..+-..=.... ....++..++..    ......++..-.+...   ...+++   + .+.
T Consensus       727 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  805 (908)
T COG0419         727 ELEELKKELEKLEKALELLEELREKLGKAG-LRADILRNLLAQIEAEANEILSKLSLNRYDLRRLTIRKDGNGGLVVVVY  805 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccccceEEEEe
Confidence            888888888877766666666665555443 334444444444    3334444443333332   222221   1 111


Q ss_pred             cCChhhHHHhhcccch---hHHHHHHHHhhhhhhhhhhhhhhhhcccCCCCCcc-chHHHHHHHHHHHHhh
Q 004913          621 SSSAADALALLTSSDD---QISLLITEAQLLAEDSKAAASADVEKAHDNDVCTR-TDNELREVIADILVDN  687 (724)
Q Consensus       621 ~ss~~da~dlL~tsDn---rI~lLlaEaqll~~d~e~~~~~~~~~~~~~~~~~~-~d~elrk~lad~~idn  687 (724)
                      ......+..-|+.-..   -|++=||=+..+....       .-..-..|++.. =|.|.+.-|+++|..-
T Consensus       806 ~~~~~r~~~~LSGGE~~~~sLalrLALs~~~~~~~-------~l~~l~LDEpf~~LD~e~l~~l~~~l~~i  869 (908)
T COG0419         806 DGGEVRPIKTLSGGERFLASLALRLALSDLLQGRA-------RLELLFLDEPFGTLDEERLEKLAEILEEL  869 (908)
T ss_pred             cCCCccccccCCchHHHHHHHHHHHHHHHHHhccc-------CCCeeEeeCCCCCCCHHHHHHHHHHHHHH
Confidence            1111234444443332   2455556666654331       113446666665 7888999999988643

>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]

Probab=92.69  E-value=2.6  Score=51.09  Aligned_cols=106  Identities=25%  Similarity=0.198  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHhccc-------cCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHH--hhhcccchhHH
Q 004913          473 MEELRQKSLEMEWKLKSK-------QDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEEL--EAKSKADIKVL  542 (724)
Q Consensus       473 meelr~k~~e~E~~lks~-------~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~el--Eakskad~KvL  542 (724)
                      .++=+++..|||-.|.+-       .-.....+.-+..+-.|++ -||.+-+-+..|  -++..++.  ||+.| ..|-+
T Consensus       924 ~eeKDqei~EleailekQNca~eeakqn~eis~Ed~kkLhaE~daeLe~~~ael~el--eqk~le~~eDea~aR-h~kef 1000 (1424)
T KOG4572|consen  924 IEEKDQEIEELEAILEKQNCAHEEAKQNDEISEEDKKKLHAEIDAELEKEFAELIEL--EQKALECKEDEAFAR-HEKEF 1000 (1424)
T ss_pred             HhhhhHHHHHHHHHHHhhhhhHHHHhhcCcccHHHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHhhhHHHHH-HHHHH
Confidence            466788888998877442       1222344455556666666 223222222222  23444444  44554 46788


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 004913          543 VKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTH  581 (724)
Q Consensus       543 vKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~  581 (724)
                      -+|.+-+|.++.++|+|+.+...++.+++..+-+|++.+
T Consensus      1001 E~~mrdhrselEe~kKe~eaiineiee~eaeIiQekE~e 1039 (1424)
T KOG4572|consen 1001 EIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEKEGE 1039 (1424)
T ss_pred             HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence            999999999999999999999999999999998887653

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=92.36  E-value=9.6  Score=47.32  Aligned_cols=177  Identities=20%  Similarity=0.277  Sum_probs=103.3

Q ss_pred             ecccchhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhh
Q 004913          390 IPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQM  469 (724)
Q Consensus       390 lp~d~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~m  469 (724)
                      +=.-+-+-.+-.|..++.--.++--.-++++.+|++..+--+=|-++++.||..|.+.+. -   .||+=..|-+.+   
T Consensus       227 iYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~-e---keq~~a~~t~~~---  299 (1200)
T KOG0964|consen  227 IYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLRE-E---KEQLKARETKIS---  299 (1200)
T ss_pred             hhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-H---HHHHHHHHHHHH---
Confidence            333444556666677777667777778899999999999999999999999999988765 3   344433332222   


Q ss_pred             hhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhh---hcccchhHHHHH
Q 004913          470 QWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEA---KSKADIKVLVKE  545 (724)
Q Consensus       470 qwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEa---kskad~KvLvKE  545 (724)
                              ++-.-+|++.+..|+.-+..+...+......+ +..++...++.|.-...+|.++--   .-++++-.|-..
T Consensus       300 --------k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~  371 (1200)
T KOG0964|consen  300 --------KKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQK  371 (1200)
T ss_pred             --------HHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence                    34455667777777666665555555554444 444444444444333333333211   111122122111


Q ss_pred             HH--------------------HHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHH
Q 004913          546 VK--------------------FLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMK  585 (724)
Q Consensus       546 VK--------------------sLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~  585 (724)
                      -+                    -+|+...    .|++.+.+..+.+.+||.|....+...
T Consensus       372 ~~~l~~Kqgr~sqFssk~eRDkwir~ei~----~l~~~i~~~ke~e~~lq~e~~~~e~~l  427 (1200)
T KOG0964|consen  372 QRDLLAKQGRYSQFSSKEERDKWIRSEIE----KLKRGINDTKEQENILQKEIEDLESEL  427 (1200)
T ss_pred             HHHHHHhhccccccCcHHHHHHHHHHHHH----HHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            11                    1222211    355677888888888888886655543

>PRK09039 hypothetical protein; Validated

Probab=92.21  E-value=2.7  Score=46.04  Aligned_cols=46  Identities=20%  Similarity=0.264  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHh
Q 004913          510 VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNE  566 (724)
Q Consensus       510 ~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~e  566 (724)
                      |.+|+.+.|.|+..|+...++.|++.           +..+.+..+|+++|..++.+
T Consensus       142 L~~qI~aLr~Qla~le~~L~~ae~~~-----------~~~~~~i~~L~~~L~~a~~~  187 (343)
T PRK09039        142 LNQQIAALRRQLAALEAALDASEKRD-----------RESQAKIADLGRRLNVALAQ  187 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666554           66777777888888888766

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=92.16  E-value=18  Score=38.22  Aligned_cols=34  Identities=26%  Similarity=0.312  Sum_probs=24.7

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHH
Q 004913          542 LVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQ  575 (724)
Q Consensus       542 LvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~  575 (724)
                      +--||+.+|.....|..++...-..+..+|+-|.
T Consensus       214 ~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~  247 (312)
T PF00038_consen  214 AKEELKELRRQIQSLQAELESLRAKNASLERQLR  247 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHhHHHHHHhhhhHhhhhhhccccchhhhhhhHH
Confidence            4457777777777777777777777777777664

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>smart00787 Spc7 Spc7 kinetochore protein

Probab=92.15  E-value=4.3  Score=44.21  Aligned_cols=22  Identities=27%  Similarity=0.360  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHH
Q 004913          555 GLKQELSQMLNEKSKTEELLQQ  576 (724)
Q Consensus       555 ~lk~el~~~~~eK~e~E~~l~~  576 (724)
                      +.++++.+...+-.++|+++.+
T Consensus       243 ~~~~~k~e~~~~I~~ae~~~~~  264 (312)
T smart00787      243 DLTNKKSELNTEIAEAEKKLEQ  264 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            3444444444444445554433

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PLN02939 transferase, transferring glycosyl groups

Probab=92.01  E-value=1.3  Score=54.57  Aligned_cols=144  Identities=20%  Similarity=0.269  Sum_probs=110.1

Q ss_pred             eEEecccchhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhh
Q 004913          387 ELVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERL  466 (724)
Q Consensus       387 ~~vlp~d~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~  466 (724)
                      .++.--.+|.-|.--|.-||.||..|++|+-.|..+= .+     -|..||..|+.-|+++.    ...+||++.    +
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~----~~~~~~~~~----~  323 (977)
T PLN02939        258 RVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQ-YD-----CWWEKVENLQDLLDRAT----NQVEKAALV----L  323 (977)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchh-HH-----HHHHHHHHHHHHHHHHH----HHHHHHHHH----h
Confidence            3445567888899999999999999999999887653 22     29999999999888654    456788876    3


Q ss_pred             hhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Q 004913          467 TQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEV  546 (724)
Q Consensus       467 t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEV  546 (724)
                      .|    -.+||.|.-.+|..|+.-.-.|..              -..++-.|++++.+..++.+-.++..+++.+--.+|
T Consensus       324 ~~----~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (977)
T PLN02939        324 DQ----NQDLRDKVDKLEASLKEANVSKFS--------------SYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESI  385 (977)
T ss_pred             cc----chHHHHHHHHHHHHHHHhhHhhhh--------------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            33    247999999999888754322221              123455677888888888888999999999999999


Q ss_pred             HHHhhhhHHHHHHHHH
Q 004913          547 KFLRSSQIGLKQELSQ  562 (724)
Q Consensus       547 KsLR~s~~~lk~el~~  562 (724)
                      +-++.+...|+.|-..
T Consensus       386 ~~~~~~~~~~~~~~~~  401 (977)
T PLN02939        386 KEFQDTLSKLKEESKK  401 (977)
T ss_pred             HHHHHHHHHHHhhhhc
Confidence            9999999888887543

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=92.01  E-value=11  Score=47.25  Aligned_cols=29  Identities=28%  Similarity=0.393  Sum_probs=19.0

Q ss_pred             chhHHHHHHHHHhhhhHHHHHHHHHHHHh
Q 004913          538 DIKVLVKEVKFLRSSQIGLKQELSQMLNE  566 (724)
Q Consensus       538 d~KvLvKEVKsLR~s~~~lk~el~~~~~e  566 (724)
                      ..+-|.+||..|+.+...|++|+...+++
T Consensus       402 k~~~L~~evek~e~~~~~L~~e~~~~~~~  430 (1074)
T KOG0250|consen  402 KLEQLKKEVEKLEEQINSLREELNEVKEK  430 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567777777777777777666665544

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=91.98  E-value=3.3  Score=48.39  Aligned_cols=154  Identities=19%  Similarity=0.225  Sum_probs=74.2

Q ss_pred             HHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHH--HHHHHH
Q 004913          403 LTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDME--ELRQKS  480 (724)
Q Consensus       403 ~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdme--elr~k~  480 (724)
                      .++..-=..=|-++-+|=-||.-.+.==-||-+-=+-||.+|...+..        +-.|--.|-.| +++|  .+|+-.
T Consensus        31 s~ir~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~--------~~~~ts~ik~~-ye~El~~ar~~l  101 (546)
T KOG0977|consen   31 SPIRDSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGV--------VGRETSGIKAK-YEAELATARKLL  101 (546)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ccCCCcchhHH-hhhhHHHHHHHH
Confidence            444444456677888888888766654444444444444455444332        21111111110 0010  122222


Q ss_pred             HHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhh---cccchhHHHHHHHHHhhhhHHH
Q 004913          481 LEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAK---SKADIKVLVKEVKFLRSSQIGL  556 (724)
Q Consensus       481 ~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEak---skad~KvLvKEVKsLR~s~~~l  556 (724)
                      -+..-..-..+.+-.........+....+ ..+....+++++.+....+.++||+   .|+.+|.|.-|+|-||.++..|
T Consensus       102 ~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl  181 (546)
T KOG0977|consen  102 DETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRL  181 (546)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            21111111111111111122233333333 4444555555555556666677764   5778888888888888877777


Q ss_pred             HHHHHHHHH
Q 004913          557 KQELSQMLN  565 (724)
Q Consensus       557 k~el~~~~~  565 (724)
                      ..+|..+.+
T Consensus       182 ~~~l~~~r~  190 (546)
T KOG0977|consen  182 REELARARK  190 (546)
T ss_pred             HHHHHHHHH
Confidence            777665544

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=91.93  E-value=17  Score=44.58  Aligned_cols=81  Identities=30%  Similarity=0.247  Sum_probs=56.6

Q ss_pred             HHHHHHHHhhhcccchhHHHHH-------HHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 004913          524 LSKRYEELEAKSKADIKVLVKE-------VKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECR  596 (724)
Q Consensus       524 l~k~~~elEakskad~KvLvKE-------VKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~  596 (724)
                      +.++.+|-+-+-|+-.-||.+|       ||-|..-...+||--.+++.+-.+..+.|..|-     .+-.|.|+---|+
T Consensus       264 sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~en-----mkltrqkadirc~  338 (1265)
T KOG0976|consen  264 SAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLEN-----MKLTRQKADIRCA  338 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence            3466666666777777777766       566667777777777777777777777777665     5556666666788


Q ss_pred             HHHHHHhhhcccc
Q 004913          597 ILLNRFQACNANL  609 (724)
Q Consensus       597 iL~~rLqEC~~~~  609 (724)
                      +|-+|++.-+++-
T Consensus       339 LlEarrk~egfdd  351 (1265)
T KOG0976|consen  339 LLEARRKAEGFDD  351 (1265)
T ss_pred             HHHHHHhhcchhH
Confidence            8888877665543

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=91.80  E-value=15  Score=45.78  Aligned_cols=202  Identities=17%  Similarity=0.146  Sum_probs=110.2

Q ss_pred             hHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHH
Q 004913          397 KLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEEL  476 (724)
Q Consensus       397 kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeel  476 (724)
                      .|.--+.++++-..+..|+..-.-+-||+|.-=.+-+.....|++..|+.-+-.-.+...-+-.. .|.       +-++
T Consensus       298 ~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~-ke~-------~~~~  369 (1174)
T KOG0933|consen  298 ALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKL-KEA-------FQED  369 (1174)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHH-HHH-------HHHH
Confidence            45555667777777777777777777888776666666666666655554333222221111111 222       2234


Q ss_pred             HHHHHHHHHHhccccCCCCcccc-------hhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Q 004913          477 RQKSLEMEWKLKSKQDGNPHAES-------MEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKF  548 (724)
Q Consensus       477 r~k~~e~E~~lks~~~~~~~~e~-------~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKs  548 (724)
                      ..-+-..|+.+.+.-.+.+..+-       .+..+....- +.-++...+-.++.+++++...|.+.+.--+--++.++.
T Consensus       370 s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~  449 (1174)
T KOG0933|consen  370 SKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEE  449 (1174)
T ss_pred             HHHHHHHHHHHHHHhcccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHH
Confidence            55555555566655333333222       2222222222 555777777788888888887777665544444555555


Q ss_pred             HhhhhHHH---HHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 004913          549 LRSSQIGL---KQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANLYAE  612 (724)
Q Consensus       549 LR~s~~~l---k~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~~~e  612 (724)
                      |+..+.+.   ++.|.-+=-+-...|.+.++.+    .-+....+|..+...|.+||  -||.|-|-
T Consensus       450 ld~~q~eve~l~~~l~~l~~~~~~~e~l~q~~~----~l~~~~~~lk~~~~~l~a~~--~~~~f~Y~  510 (1174)
T KOG0933|consen  450 LDALQNEVEKLKKRLQSLGYKIGQEEALKQRRA----KLHEDIGRLKDELDRLLARL--ANYEFTYQ  510 (1174)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHH----HHHHHHHHHHHHHHHHHhhh--cccccccC
Confidence            55544432   2222222222233344444433    34455677888888888888  77777654

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=91.79  E-value=11  Score=40.18  Aligned_cols=121  Identities=25%  Similarity=0.331  Sum_probs=73.6

Q ss_pred             HHhhhhhhHHHHHHHHHhhH--HHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-
Q 004913          433 LMTKVKDLEVELETTKQKSK--ETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-  509 (724)
Q Consensus       433 L~tKvkDlE~eLe~t~~~~k--e~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-  509 (724)
                      |-+.|+.+|.+|..++.+-+  +..+-||-++|| +..++-+|..+-+..-..|.              ....+..+.+ 
T Consensus        57 le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e-~~aL~~E~~~ak~r~~~le~--------------el~~l~~~~~~  121 (239)
T COG1579          57 LENQVSQLESEIQEIRERIKRAEEKLSAVKDERE-LRALNIEIQIAKERINSLED--------------ELAELMEEIEK  121 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH-HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHH
Confidence            45667777777766655432  233356666554 34444444433333333322              2344455555 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHH
Q 004913          510 VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKS  568 (724)
Q Consensus       510 ~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~  568 (724)
                      +..++...++.+..+.+...+.++.....++.+-++...+...-.+|+.++..-+-.+.
T Consensus       122 l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~ell~~y  180 (239)
T COG1579         122 LEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDPELLSEY  180 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            66677777777777777777777777777777777777777777777777766554443

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=91.27  E-value=8  Score=42.62  Aligned_cols=161  Identities=23%  Similarity=0.293  Sum_probs=107.8

Q ss_pred             ecccchhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhh
Q 004913          390 IPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQM  469 (724)
Q Consensus       390 lp~d~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~m  469 (724)
                      .|...-..|-.+|.-...+--..+++.++|-.||+-.--==..|-.++.+..+.-...-..  ...     .|||.+-. 
T Consensus        62 ~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~--~~~-----~ere~lV~-  133 (319)
T PF09789_consen   62 PPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGAR--HFP-----HEREDLVE-  133 (319)
T ss_pred             CcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcccccc--ccc-----hHHHHHHH-
Confidence            3445667888889888888889999999998888754433346777777777766544322  111     77876554 


Q ss_pred             hhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Q 004913          470 QWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKF  548 (724)
Q Consensus       470 qwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKs  548 (724)
                        .+|.++.++.++|..+++.              ..|++ +..|-|+.+..++-|..+..-+=   ..|..-+| -|=+
T Consensus       134 --qLEk~~~q~~qLe~d~qs~--------------lDEkeEl~~ERD~yk~K~~RLN~ELn~~L---~g~~~riv-DIDa  193 (319)
T PF09789_consen  134 --QLEKLREQIEQLERDLQSL--------------LDEKEELVTERDAYKCKAHRLNHELNYIL---NGDENRIV-DIDA  193 (319)
T ss_pred             --HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCCCcc-cHHH
Confidence              5799999999999888765              55667 88899999999999988775542   22222222 3444


Q ss_pred             HhhhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004913          549 LRSSQIGLKQELSQMLNEKSKTEELLQQER  578 (724)
Q Consensus       549 LR~s~~~lk~el~~~~~eK~e~E~~l~~Er  578 (724)
                      |-..+.-|++.+.+.-.|+.-+...|.+=|
T Consensus       194 Li~ENRyL~erl~q~qeE~~l~k~~i~KYK  223 (319)
T PF09789_consen  194 LIMENRYLKERLKQLQEEKELLKQTINKYK  223 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444555556666666666655555555

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.26  E-value=7.3  Score=46.93  Aligned_cols=126  Identities=20%  Similarity=0.246  Sum_probs=64.0

Q ss_pred             hhhHhHHHHHHHHH-HhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhh-Hhhhhhhhc
Q 004913          395 RHKLSRVLLTMERR-LVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSER-ERLTQMQWD  472 (724)
Q Consensus       395 r~kl~rvl~t~~~r-l~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~Er-Er~t~mqwd  472 (724)
                      .+-|.+....+..+ +.-...=.+.+-.|+++-.+-++--..++.+|+.+++..+.+. +     .|+|| |++...|+.
T Consensus       538 l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~a-e-----~LaeR~e~a~d~Qe~  611 (717)
T PF10168_consen  538 LELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESA-E-----KLAERYEEAKDKQEK  611 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-----HHHHHHHHHHHHHHH
Confidence            33444444444333 2323333445555555555556666666666666655553222 1     12222 344444443


Q ss_pred             HHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 004913          473 MEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKAD  538 (724)
Q Consensus       473 meelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEakskad  538 (724)
                         |.+++..+=..++..+-         .-...|++..+||+.++.++..|+...+++-+|...+
T Consensus       612 ---L~~R~~~vl~~l~~~~P---------~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q  665 (717)
T PF10168_consen  612 ---LMKRVDRVLQLLNSQLP---------VLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQ  665 (717)
T ss_pred             ---HHHHHHHHHHHHhccCC---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               33333333223322211         2344567778888888888888887777765555444

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=91.22  E-value=27  Score=38.54  Aligned_cols=65  Identities=14%  Similarity=0.167  Sum_probs=31.5

Q ss_pred             hhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHH--------HHhhHhhhhhhhcHHHHHHHHHHHHHHhcc
Q 004913          425 QEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAI--------LSERERLTQMQWDMEELRQKSLEMEWKLKS  489 (724)
Q Consensus       425 qe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~--------l~ErEr~t~mqwdmeelr~k~~e~E~~lks  489 (724)
                      ......+||...++.++.+|+...++-..=-++--        -.+-.++.+++=.+...+.+..+.+.++..
T Consensus       168 ~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~  240 (444)
T TIGR03017       168 PAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGG  240 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33445666666666665555554443322111111        111344555555555566666666655543

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=91.11  E-value=2.6  Score=49.86  Aligned_cols=58  Identities=29%  Similarity=0.373  Sum_probs=40.8

Q ss_pred             HHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHh---hHHHHHHHHHH
Q 004913          404 TMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQK---SKETLQQAILS  461 (724)
Q Consensus       404 t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~---~ke~lqQa~l~  461 (724)
                      +.|.||....-|+|-|+--..=-..--+-=-.|++|||+-|+.-++|   ..|-|||-.+.
T Consensus       108 ~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqells  168 (861)
T KOG1899|consen  108 EYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLS  168 (861)
T ss_pred             HHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHh
Confidence            67899999999999987543211111122346999999999988776   45778887776

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=90.67  E-value=24  Score=43.57  Aligned_cols=165  Identities=20%  Similarity=0.262  Sum_probs=87.4

Q ss_pred             HhHHHHHHHHHHhhhhcchHHHHHHh------hhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHH------HHHHHHhhHh
Q 004913          398 LSRVLLTMERRLVTAKTDMEDLITRL------NQEMTVKDYLMTKVKDLEVELETTKQKSKETL------QQAILSERER  465 (724)
Q Consensus       398 l~rvl~t~~~rl~~aktdmEDLiaRL------nqe~avk~fL~tKvkDlE~eLe~t~~~~ke~l------qQa~l~ErEr  465 (724)
                      +-+++..-++|+.+.+.-+++|-.-|      +|+-.+-+   .++++....|..++..+..-.      +--+++=..|
T Consensus       349 l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~---eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~r  425 (980)
T KOG0980|consen  349 LENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQ---EQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENR  425 (980)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            34555666778888888888886544      44443332   277777777777765442221      1112222333


Q ss_pred             hhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccc--------
Q 004913          466 LTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKA--------  537 (724)
Q Consensus       466 ~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEakska--------  537 (724)
                      +..|-=-..+||++-.+|=.|+.-.+--....+.   ++.   ++.++.....++||.++.+.+.+|+|-..        
T Consensus       426 y~klkek~t~l~~~h~~lL~K~~di~kQle~~~~---s~~---~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l  499 (980)
T KOG0980|consen  426 YEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQ---SID---DVEEENTNLNDQLEELQRAAGRAETKTESQAKALESL  499 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            3333333445555555554444333111111111   111   13333444444555555555554444433        


Q ss_pred             ---------chhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHH
Q 004913          538 ---------DIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTE  571 (724)
Q Consensus       538 ---------d~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E  571 (724)
                               +.+.|-.++++++.++....+++...+++|--+-
T Consensus       500 ~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~  542 (980)
T KOG0980|consen  500 RQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLA  542 (980)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence                     3445666778888888888888888888886443

>smart00787 Spc7 Spc7 kinetochore protein

Probab=90.29  E-value=5.1  Score=43.69  Aligned_cols=192  Identities=14%  Similarity=0.172  Sum_probs=93.9

Q ss_pred             hHHHHHHHHHHhhhhcchHHHHHHhhhhh--hHHHHHHhhhhhhHHHHHHHHHhhHHHH---HHHHHHhhHhhhhhhhcH
Q 004913          399 SRVLLTMERRLVTAKTDMEDLITRLNQEM--TVKDYLMTKVKDLEVELETTKQKSKETL---QQAILSERERLTQMQWDM  473 (724)
Q Consensus       399 ~rvl~t~~~rl~~aktdmEDLiaRLnqe~--avk~fL~tKvkDlE~eLe~t~~~~ke~l---qQa~l~ErEr~t~mqwdm  473 (724)
                      ...-.-|.+++..-+-=..++-+..+.+-  =.|+|.+.= -|.=..+....+.-|..-   -.++|        ..|-|
T Consensus        69 ~~sC~EL~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~-~d~r~lm~~Qf~lvK~~aRl~ak~~W--------YeWR~  139 (312)
T smart00787       69 QFSCKELKKYISEGRDLFKEIEEETLINNPPLFKEYFSAS-PDVKLLMDKQFQLVKTFARLEAKKMW--------YEWRM  139 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHH
Confidence            44556677777777765555544444333  367887541 111111222222222211   12223        24544


Q ss_pred             HHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhh
Q 004913          474 EELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSS  552 (724)
Q Consensus       474 eelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s  552 (724)
                      -=+.-=-...+.++...+.+.....-..+.+..-.. +.+.....+.++..|++..++++.--..+.+-|-.+++.+-..
T Consensus       140 kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~e  219 (312)
T smart00787      140 KLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQE  219 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            333322233333333333333333333333333344 6667777777788888888877765555555555555555555


Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhc
Q 004913          553 QIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACN  606 (724)
Q Consensus       553 ~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~  606 (724)
                      ++..++++.+.-.+..+++..|..       ...-..++..+++-+...+.+|.
T Consensus       220 i~~~~~~l~e~~~~l~~l~~~I~~-------~~~~k~e~~~~I~~ae~~~~~~r  266 (312)
T smart00787      220 IMIKVKKLEELEEELQELESKIED-------LTNKKSELNTEIAEAEKKLEQCR  266 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcC
Confidence            555555555444444444444433       22334455556666666666663

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=89.84  E-value=4.4  Score=38.54  Aligned_cols=127  Identities=20%  Similarity=0.322  Sum_probs=71.2

Q ss_pred             hhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHH
Q 004913          435 TKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQE  513 (724)
Q Consensus       435 tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qe  513 (724)
                      .++..|+.++.+.+......        .+.+..++=|++.....+.+.+.+|..+        .      ..+. ..+.
T Consensus         3 ~e~~~l~~e~~~~~~~~~~~--------~~~~~~~~~dl~~q~~~a~~Aq~~YE~E--------l------~~Ha~~~~~   60 (132)
T PF07926_consen    3 SELSSLQSELQRLKEQEEDA--------EEQLQSLREDLESQAKIAQEAQQKYERE--------L------VKHAEDIKE   60 (132)
T ss_pred             hHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H------HHhHHHHHH
Confidence            45666777776665544433        3455566667777888888887777655        1      2222 5666


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 004913          514 LDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLH  593 (724)
Q Consensus       514 l~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllh  593 (724)
                      |..+|+++..++.+..++                  |.+-...+.+|.+.-..+.+.+..|..|....+   .-...|-+
T Consensus        61 L~~lr~e~~~~~~~~~~l------------------~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~---~r~~dL~~  119 (132)
T PF07926_consen   61 LQQLREELQELQQEINEL------------------KAEAESAKAELEESEASWEEQKEQLEKELSELE---QRIEDLNE  119 (132)
T ss_pred             HHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence            777776666665444443                  333334444445555555555555555543222   22344555


Q ss_pred             HHHHHHHHHhh
Q 004913          594 ECRILLNRFQA  604 (724)
Q Consensus       594 ec~iL~~rLqE  604 (724)
                      -=.+||++|+.
T Consensus       120 QN~lLh~QlE~  130 (132)
T PF07926_consen  120 QNKLLHDQLES  130 (132)
T ss_pred             HHHHHHHHHhh
Confidence            55677777653

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=89.80  E-value=6.8  Score=44.34  Aligned_cols=75  Identities=24%  Similarity=0.287  Sum_probs=34.7

Q ss_pred             hhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHH----HHHHHHHHhHHHHHHHHHH
Q 004913          502 ESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLK----QELSQMLNEKSKTEELLQQ  576 (724)
Q Consensus       502 ~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk----~el~~~~~eK~e~E~~l~~  576 (724)
                      ..+.+++- .+|+|..+.+|..+|+.+...|-+    ++.-|.-+--||-+++.+|.    |-.++-+.=|.+.++|=|+
T Consensus       126 ~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~----qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~  201 (499)
T COG4372         126 AAARQNLAKAQQELARLTKQAQDLQTRLKTLAE----QRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQE  201 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444 555555555555555544443322    12223333334444444444    2223334445556666666


Q ss_pred             HHHh
Q 004913          577 ERQT  580 (724)
Q Consensus       577 Er~~  580 (724)
                      ++.-
T Consensus       202 ~~~l  205 (499)
T COG4372         202 AQNL  205 (499)
T ss_pred             HHHH
Confidence            6643

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=89.66  E-value=16  Score=43.03  Aligned_cols=92  Identities=22%  Similarity=0.321  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhh-------cccchhHHHHHHHHHhhhhHHHHHHHHHHHHh----------HHHHHH
Q 004913          510 VLQELDATKEQLENLSKRYEELEAK-------SKADIKVLVKEVKFLRSSQIGLKQELSQMLNE----------KSKTEE  572 (724)
Q Consensus       510 ~~qel~~~~~~~e~l~k~~~elEak-------skad~KvLvKEVKsLR~s~~~lk~el~~~~~e----------K~e~E~  572 (724)
                      +.+++...+.+++.+++++.+++.+       ...++.-|.++++.|+....+.++++.++...          -.++..
T Consensus       228 l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~~p~~l~~~ll~~~~~  307 (650)
T TIGR03185       228 LAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELAADPLPLLLIPNLLDSTKA  307 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHhhhHHHHHHHHH
Confidence            3344444444444444444444443       33445566667777777777777777665522          245556


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004913          573 LLQQERQTHNHMKTVREKLLHECRILLNRF  602 (724)
Q Consensus       573 ~l~~Er~~~e~~~~ar~kllhec~iL~~rL  602 (724)
                      .|..|++.. +.......|..--+-|+.++
T Consensus       308 q~~~e~~~~-~~~~~~~~l~~~~~~i~~~~  336 (650)
T TIGR03185       308 QLQKEEQSQ-QNQLTQEELEERDKELLESL  336 (650)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            666666443 44344443334334444444

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=89.63  E-value=14  Score=44.01  Aligned_cols=97  Identities=9%  Similarity=0.163  Sum_probs=45.5

Q ss_pred             eEEecccchhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHH-------HHHHHHHhhHHHHHHHH
Q 004913          387 ELVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEV-------ELETTKQKSKETLQQAI  459 (724)
Q Consensus       387 ~~vlp~d~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~-------eLe~t~~~~ke~lqQa~  459 (724)
                      .|-+=..--.+-.+|++++=+-...-.     +-.|........+||...+.++..       +|+.-|+++....-+..
T Consensus       158 ~Is~~~~dP~~Aa~iaN~la~~Y~~~~-----~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~  232 (754)
T TIGR01005       158 AIEFRSEDPKLAAAIPDAIAAAYIAGQ-----GAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNA  232 (754)
T ss_pred             EEEEecCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCc
Confidence            334444445556666666544443221     223344445566777666555555       45555555444332221


Q ss_pred             HHhhHhhhhhhhcHHHHHHHHHHHHHHhc
Q 004913          460 LSERERLTQMQWDMEELRQKSLEMEWKLK  488 (724)
Q Consensus       460 l~ErEr~t~mqwdmeelr~k~~e~E~~lk  488 (724)
                      ...-++++.+.=.+...+.+..+.+..++
T Consensus       233 ~~~~~~L~~l~~ql~~a~~~~~~a~a~~~  261 (754)
T TIGR01005       233 TLATQQLAELNTELSRARANRAAAEGTAD  261 (754)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11124455544444444444444444443

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=89.51  E-value=53  Score=39.12  Aligned_cols=209  Identities=18%  Similarity=0.213  Sum_probs=117.3

Q ss_pred             chhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHH---------HhhHHHHHHHHHHhhH
Q 004913          394 QRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTK---------QKSKETLQQAILSERE  464 (724)
Q Consensus       394 ~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~---------~~~ke~lqQa~l~ErE  464 (724)
                      +...|...|..+..++....++|++|-+.+.|-..=.+=.......||.+++--+         .++-+.||..|=.-.+
T Consensus       329 el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~  408 (594)
T PF05667_consen  329 ELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQ  408 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            3456788888888999999999998887777666555555566666676665321         3444666777777788


Q ss_pred             hhhhhhhcHHHHHHHHHHHHHHhccccCCCCc----ccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccch
Q 004913          465 RLTQMQWDMEELRQKSLEMEWKLKSKQDGNPH----AESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADI  539 (724)
Q Consensus       465 r~t~mqwdmeelr~k~~e~E~~lks~~~~~~~----~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~  539 (724)
                      |+-.|+=.+|..|..+.+--..|+...+.+..    .-...+.+.++.+ +.+|+....+.+..|.++|+.+--.  ..+
T Consensus       409 rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~--~~R  486 (594)
T PF05667_consen  409 RLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD--VNR  486 (594)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCH
Confidence            88888655567777766655555554332221    1112233344444 4445555555555555544443221  222


Q ss_pred             hHHH----HHHHHHhhhhHHHHHHHH--------------HHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 004913          540 KVLV----KEVKFLRSSQIGLKQELS--------------QMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNR  601 (724)
Q Consensus       540 KvLv----KEVKsLR~s~~~lk~el~--------------~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~r  601 (724)
                      .--+    -=||++|.|..++.+-|+              ++...-+-++.+|=++-.+-+.++.|= |+|..+.-.|+.
T Consensus       487 s~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdAKkDe~~rkaY-K~La~lh~~c~~  565 (594)
T PF05667_consen  487 SAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRDAKKDEAARKAY-KLLASLHENCSQ  565 (594)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCHHHHHHH-HHHHHHHHHHHH
Confidence            2221    225666666655544443              222233445566666666666665553 444455555555


Q ss_pred             Hhhh
Q 004913          602 FQAC  605 (724)
Q Consensus       602 LqEC  605 (724)
                      |-+|
T Consensus       566 Li~~  569 (594)
T PF05667_consen  566 LIET  569 (594)
T ss_pred             HHHH
Confidence            5444

>PF13514 AAA_27: AAA domain

Probab=89.49  E-value=13  Score=46.43  Aligned_cols=175  Identities=24%  Similarity=0.313  Sum_probs=70.5

Q ss_pred             hhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHh--hHHHHHHHHHHhhHhhhhhhhc
Q 004913          395 RHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQK--SKETLQQAILSERERLTQMQWD  472 (724)
Q Consensus       395 r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~--~ke~lqQa~l~ErEr~t~mqwd  472 (724)
                      ...+.+-+..|++.+.+-......|+.++.......... ..|..|...|+..++.  ..+.+++.+-.-++.+.+.+=.
T Consensus       745 ~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~-~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~  823 (1111)
T PF13514_consen  745 IRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAE-EALEALRARLEEAREAQEERERLQEQLEELEEELEQAEEE  823 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444455555554445555555554432222111 4555555555555433  2223333333334444443333


Q ss_pred             HHHHHHHHHHHHHHhccccCCCCcccc-hhhhhHHHHh-HHHHHHHHHHHHHHHHHH--HHHHhhhc-ccchhHHHHHHH
Q 004913          473 MEELRQKSLEMEWKLKSKQDGNPHAES-MEESTVKDKN-VLQELDATKEQLENLSKR--YEELEAKS-KADIKVLVKEVK  547 (724)
Q Consensus       473 meelr~k~~e~E~~lks~~~~~~~~e~-~~~s~~~e~~-~~qel~~~~~~~e~l~k~--~~elEaks-kad~KvLvKEVK  547 (724)
                      ++.++.+..++-....-.    ...+. .......+.. +.+++...+.+++.....  ..++++.. ..+..-|..++.
T Consensus       824 l~~~~~~l~~L~~~a~~~----~~e~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~e~~~~d~~~l~~~l~  899 (1111)
T PF13514_consen  824 LEELEAELAELLEQAGVE----DEEELREAEERAEERRELREELEDLERQLERQADGLDLEELEEELEELDPDELEAELE  899 (1111)
T ss_pred             HHHHHHHHHHHHHhccCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHhhccCHHHHHHHHH
Confidence            333333333221111100    00011 0111122223 556666666665433321  22222211 124444445555


Q ss_pred             HHhhhhHHHHHHHHHHHHhHHHHHHHH
Q 004913          548 FLRSSQIGLKQELSQMLNEKSKTEELL  574 (724)
Q Consensus       548 sLR~s~~~lk~el~~~~~eK~e~E~~l  574 (724)
                      .|......|.+++.+...+..+++.-|
T Consensus       900 ~l~~~l~~l~~~~~~l~~~~~~~~~~l  926 (1111)
T PF13514_consen  900 ELEEELEELEEELEELQEERAELEQEL  926 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555554444444333

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=89.49  E-value=47  Score=39.72  Aligned_cols=89  Identities=18%  Similarity=0.297  Sum_probs=52.0

Q ss_pred             hhhcHHHHHHHHHHHHHHhccccCCCCcccch----hhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhc--------
Q 004913          469 MQWDMEELRQKSLEMEWKLKSKQDGNPHAESM----EESTVKDKN-VLQELDATKEQLENLSKRYEELEAKS--------  535 (724)
Q Consensus       469 mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~----~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEaks--------  535 (724)
                      ||=-.+++-.+...|...++--+.+-...+..    ...-..|-. ++.+|+.+++-+..|+.+.+.+.-+.        
T Consensus       194 ~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~  273 (629)
T KOG0963|consen  194 LQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKK  273 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            33444555556666655555444444433333    222233444 77788888877777776666554321        


Q ss_pred             -----------------ccchhHHHHHHHHHhhhhHHHH
Q 004913          536 -----------------KADIKVLVKEVKFLRSSQIGLK  557 (724)
Q Consensus       536 -----------------kad~KvLvKEVKsLR~s~~~lk  557 (724)
                                       -..++-|+.+|+.+++|+.++.
T Consensus       274 ~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~  312 (629)
T KOG0963|consen  274 LAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEER  312 (629)
T ss_pred             hccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             1246778899999988876543

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=89.47  E-value=4.8  Score=41.16  Aligned_cols=94  Identities=21%  Similarity=0.309  Sum_probs=67.0

Q ss_pred             hhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHh------hhcccc
Q 004913          466 LTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELE------AKSKAD  538 (724)
Q Consensus       466 ~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elE------akskad  538 (724)
                      |..|-=+|+++|.+....+.-+              ..+..|+. +.+-|..+++.++.|+++....+      +.+|+-
T Consensus        29 IksLKeei~emkk~e~~~~k~m--------------~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~r   94 (201)
T PF13851_consen   29 IKSLKEEIAEMKKKEERNEKLM--------------AEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKAR   94 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455666666665555433              44566666 66667777777766666655544      246788


Q ss_pred             hhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHH
Q 004913          539 IKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEEL  573 (724)
Q Consensus       539 ~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~  573 (724)
                      .+++-++++.|+-.+..|++...+.-.|+.++.+-
T Consensus        95 l~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~k  129 (201)
T PF13851_consen   95 LKELEKELKDLKWEHEVLEQRFEKLEQERDELYRK  129 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999998887643

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=89.41  E-value=34  Score=36.84  Aligned_cols=69  Identities=13%  Similarity=0.067  Sum_probs=34.6

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 004913          542 LVKEVKFLRSSQIGLKQELSQMLNEKSKTEEL-LQQERQTHNHMKTVREKLLHECRILLNRFQACNANLY  610 (724)
Q Consensus       542 LvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~-l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~~  610 (724)
                      +-.++.++++...++++++.++-.+......- +.+..+....+.....++-.+...++.+|..|.+.=+
T Consensus       208 ~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~i~AP  277 (423)
T TIGR01843       208 AQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQRLIIRSP  277 (423)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEECC
Confidence            33444444444444444444433322222211 1122223344455566666777888888888876544

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=89.40  E-value=4.8  Score=43.72  Aligned_cols=139  Identities=17%  Similarity=0.168  Sum_probs=59.5

Q ss_pred             hhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Q 004913          467 TQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEV  546 (724)
Q Consensus       467 t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEV  546 (724)
                      .+|+=..++....+..|...|+..+.+....+.       ..++.+++..++++-+.|.+++.++|.    +...|.+|+
T Consensus        12 ~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~-------~~~~~~el~~le~Ee~~l~~eL~~LE~----e~~~l~~el   80 (314)
T PF04111_consen   12 EQLDKQLEQAEKERDTYQEFLKKLEEESDSEED-------IEELEEELEKLEQEEEELLQELEELEK----EREELDQEL   80 (314)
T ss_dssp             ------------------------------HH---------HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence            345555666677777777777666521111111       111455555555555555555555553    345667788


Q ss_pred             HHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccccCce
Q 004913          547 KFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANLYAEEEDNV  617 (724)
Q Consensus       547 KsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~~~ee~~~~  617 (724)
                      +.|.....+|+++-.++.++.+.+..-+.+=.+..+-..+...-.......|+ |.--+|--|-+..+|.+
T Consensus        81 ~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~-ktNv~n~~F~I~hdG~f  150 (314)
T PF04111_consen   81 EELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR-KTNVYNDTFHIWHDGPF  150 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-T--TTTTT--EEEETTE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchhceeeEeecCCe
Confidence            88888888888888888888888776665443333333333333333333332 23345556666666654

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure

Probab=89.04  E-value=9.9  Score=31.86  Aligned_cols=96  Identities=23%  Similarity=0.277  Sum_probs=71.7

Q ss_pred             hhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Q 004913          466 LTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVK  544 (724)
Q Consensus       466 ~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvK  544 (724)
                      +-+++-++++|-.=+.++|..|.+..-+...  ........+.. +.+++...+..++.+......|....-.+...+-+
T Consensus         3 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~--~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~   80 (105)
T PF00435_consen    3 LQQFQQEADELLDWLQETEAKLSSSEPGSDL--EELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQE   80 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSCTHSSSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCH--HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence            3456678899999999999999655443332  33355666666 99999999999999999999996666677788888


Q ss_pred             HHHHHhhhhHHHHHHHHHH
Q 004913          545 EVKFLRSSQIGLKQELSQM  563 (724)
Q Consensus       545 EVKsLR~s~~~lk~el~~~  563 (724)
                      .+..|...-..|.+.+.+.
T Consensus        81 ~~~~l~~~w~~l~~~~~~r   99 (105)
T PF00435_consen   81 KLEELNQRWEALCELVEER   99 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            8888887776666555443

These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=88.61  E-value=33  Score=43.18  Aligned_cols=52  Identities=21%  Similarity=0.422  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcc---cchhHHHHHHHHHhhhhHHHHHHHHHH
Q 004913          512 QELDATKEQLENLSKRYEELEAKSK---ADIKVLVKEVKFLRSSQIGLKQELSQM  563 (724)
Q Consensus       512 qel~~~~~~~e~l~k~~~elEaksk---ad~KvLvKEVKsLR~s~~~lk~el~~~  563 (724)
                      .|++.+++-|..+..++.+++++.+   ..++-+-++|+-|+.+...+++++.+.
T Consensus       337 ~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~  391 (1074)
T KOG0250|consen  337 EEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNE  391 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3444444444444444444444322   344455566666666666666666333

>PRK01156 chromosome segregation protein; Provisional

Probab=88.53  E-value=55  Score=39.84  Aligned_cols=25  Identities=12%  Similarity=0.255  Sum_probs=10.6

Q ss_pred             chhHHHHHHHHHhhhhHHHHHHHHH
Q 004913          538 DIKVLVKEVKFLRSSQIGLKQELSQ  562 (724)
Q Consensus       538 d~KvLvKEVKsLR~s~~~lk~el~~  562 (724)
                      +.+-|-+++++|......+.++++.
T Consensus       364 ~~~~l~~~l~~~~~~~~~~~~~~~~  388 (895)
T PRK01156        364 DYNSYLKSIESLKKKIEEYSKNIER  388 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            3334444444444444444443333

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=88.41  E-value=88  Score=40.24  Aligned_cols=22  Identities=9%  Similarity=0.398  Sum_probs=11.2

Q ss_pred             HHHHHhhhhcchHHHHHHhhhhh
Q 004913          405 MERRLVTAKTDMEDLITRLNQEM  427 (724)
Q Consensus       405 ~~~rl~~aktdmEDLiaRLnqe~  427 (724)
                      +.....+.+ +.|++++-|++++
T Consensus       453 ~~~~~~~~~-~~~~~~keL~e~i  474 (1317)
T KOG0612|consen  453 LDEKCQAVA-ELEEMDKELEETI  474 (1317)
T ss_pred             HHHHHHHHh-hHHHHHHHHHHHH
Confidence            333333333 5666666666554

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=88.33  E-value=58  Score=38.11  Aligned_cols=175  Identities=26%  Similarity=0.368  Sum_probs=95.8

Q ss_pred             hhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhcccc
Q 004913          412 AKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQ  491 (724)
Q Consensus       412 aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~  491 (724)
                      .....+.|...|-.|+..|.|....++.+..-|+..+..+++-..     |=+|+.+                    ++ 
T Consensus       283 i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~-----e~~~v~~--------------------sY-  336 (560)
T PF06160_consen  283 IEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKE-----ELERVSQ--------------------SY-  336 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----HHHHHHH--------------------hc-
Confidence            334444555566678999999999999999998888887765433     3334333                    11 


Q ss_pred             CCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccchh---HHHHHHHHHhhhhHHHHHHHHHHHHhHH
Q 004913          492 DGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIK---VLVKEVKFLRSSQIGLKQELSQMLNEKS  568 (724)
Q Consensus       492 ~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEakskad~K---vLvKEVKsLR~s~~~lk~el~~~~~eK~  568 (724)
                                  ...+++ ++....+.++++.+.+.+..+.........   .+..+++.+..+       |++.-++-.
T Consensus       337 ------------~L~~~e-~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~-------l~~ie~~q~  396 (560)
T PF06160_consen  337 ------------TLNHNE-LEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQ-------LEEIEEEQE  396 (560)
T ss_pred             ------------CCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence                        000000 112233344555555555555544443332   233344444444       444444444


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccccCceecccCChhhHHHhhcccchhHHHHHHHH
Q 004913          569 KTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANLYAEEEDNVILESSSAADALALLTSSDDQISLLITEA  645 (724)
Q Consensus       569 e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~~~ee~~~~~~~~ss~~da~dlL~tsDnrI~lLlaEa  645 (724)
                      ++...|+.=+.....|+..-.+|--+++..+.+++-.|+.=+             |.+-++++...-+.|.-|-++.
T Consensus       397 ~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGl-------------p~~y~~~~~~~~~~i~~l~~~L  460 (560)
T PF06160_consen  397 EINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGL-------------PEDYLDYFFDVSDEIEELSDEL  460 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-------------CHHHHHHHHHHHHHHHHHHHHH
Confidence            444444433333345555555666666677777777665433             6677777777777776554443

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=88.23  E-value=41  Score=36.27  Aligned_cols=207  Identities=21%  Similarity=0.232  Sum_probs=115.2

Q ss_pred             hcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhh-hh---cHHHHHHHHHHHHHHhc
Q 004913          413 KTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQM-QW---DMEELRQKSLEMEWKLK  488 (724)
Q Consensus       413 ktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~m-qw---dmeelr~k~~e~E~~lk  488 (724)
                      |+-+++|-.+.+.=.-.-.-|...+.|.|   ++|-.+-++-|||-=.- +-.+.-+ .|   .++..+..++++|.+..
T Consensus         5 r~sl~el~~h~~~L~~~N~~L~~~IqdtE---~st~~~Vr~lLqqy~~~-~~~i~~le~~~~~~l~~ak~eLqe~eek~e   80 (258)
T PF15397_consen    5 RTSLQELKKHEDFLTKLNKELIKEIQDTE---DSTALKVRKLLQQYDIY-RTAIDILEYSNHKQLQQAKAELQEWEEKEE   80 (258)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHhHH---hhHHHHHHHHHHHHHHH-HHHHHHHHccChHHHHHHHHHHHHHHHHHH
Confidence            33444444444333333333444455555   35556666666652111 1111111 23   36777888888888776


Q ss_pred             cccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhccc-chhHHHHHHHHHhhhhHHHHHHHHHHHH-
Q 004913          489 SKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKA-DIKVLVKEVKFLRSSQIGLKQELSQMLN-  565 (724)
Q Consensus       489 s~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakska-d~KvLvKEVKsLR~s~~~lk~el~~~~~-  565 (724)
                      +.          ...+.++-+ +-.++..++++|.-|+--. +-|==.|+ +|--|++.|..|+.+|..=-.+|+...+ 
T Consensus        81 ~~----------l~~Lq~ql~~l~akI~k~~~el~~L~TYk-D~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~  149 (258)
T PF15397_consen   81 SK----------LSKLQQQLEQLDAKIQKTQEELNFLSTYK-DHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQM  149 (258)
T ss_pred             hH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54          466777777 7778888888888887322 24444556 7888999999999888766666666553 


Q ss_pred             hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-----HhhhcccccccccCceecccCChhhHHHhhcccchhHHH
Q 004913          566 EKSKTEELLQQERQTHNHMKTVREKLLHECRILLNR-----FQACNANLYAEEEDNVILESSSAADALALLTSSDDQISL  640 (724)
Q Consensus       566 eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~r-----LqEC~~~~~~ee~~~~~~~~ss~~da~dlL~tsDnrI~l  640 (724)
                      +-..+++-.+..++..-.+-+...---|.=+++..=     ++.|-+-|-     .+       -+.+.      +.|..
T Consensus       150 el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~r-----e~-------i~el~------e~I~~  211 (258)
T PF15397_consen  150 ELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFR-----EE-------IDELE------EEIPQ  211 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH-----HH-------HHHHH------HHHHH
Confidence            344555555555554444322222211222222222     233433332     11       12233      89999


Q ss_pred             HHHHHhhhhhhh
Q 004913          641 LITEAQLLAEDS  652 (724)
Q Consensus       641 LlaEaqll~~d~  652 (724)
                      |-||++-|..+-
T Consensus       212 L~~eV~~L~~~~  223 (258)
T PF15397_consen  212 LRAEVEQLQAQA  223 (258)
T ss_pred             HHHHHHHHHHhh
Confidence            999999995554

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=88.06  E-value=70  Score=40.94  Aligned_cols=61  Identities=13%  Similarity=0.140  Sum_probs=35.8

Q ss_pred             HHHHHCCCCCCCCCCCCc--ccCCC-C--HHHHHH------------HHHHHHHHHHHHhcccCCCCCHH---HhhccCc
Q 004913          101 DLKKAFPKKNIPPAPPKG--LLRMK-S--RALLEE------------RRCSLEEWMTKLLSDIDLSRSVS---VASFLEL  160 (724)
Q Consensus       101 ~Lkk~fP~~~LPpLPPKk--~fg~~-s--~eFLEE------------RR~gLEkYLqrLLshP~Ls~S~~---L~sFLEl  160 (724)
                      ..+.+++...+-||-+..  +.|-+ +  ..+|+.            |...|-..+..=..||.+..|..   |+.|...
T Consensus        93 NFKSYaG~~ilGPFHksFtaIvGPNGSGKSNVIDsmLFVFGfRA~kiR~~klS~LIh~S~~~~~l~SCsV~vhFq~iiD~  172 (1293)
T KOG0996|consen   93 NFKSYAGKQILGPFHKSFTAIVGPNGSGKSNVIDSMLFVFGFRASKIRSKKLSALIHKSDGHPNLQSCSVEVHFQKIIDK  172 (1293)
T ss_pred             hhhhhcCceeecCCCCCceeeECCCCCCchHHHHHHHHHhhhhHhHHhHHHHHHHHhccCCCCCCcceeEEEeeeeeecc
Confidence            345666666777776653  44422 1  134432            66677777777778998876644   4444444


Q ss_pred             c
Q 004913          161 E  161 (724)
Q Consensus       161 E  161 (724)
                      +
T Consensus       173 ~  173 (1293)
T KOG0996|consen  173 P  173 (1293)
T ss_pred             C
Confidence            3

>PRK04863 mukB cell division protein MukB; Provisional

Probab=88.03  E-value=49  Score=43.35  Aligned_cols=32  Identities=19%  Similarity=0.177  Sum_probs=17.5

Q ss_pred             cchhhHhHHHHHHHHHHhhhhcchHHHHHHhh
Q 004913          393 DQRHKLSRVLLTMERRLVTAKTDMEDLITRLN  424 (724)
Q Consensus       393 d~r~kl~rvl~t~~~rl~~aktdmEDLiaRLn  424 (724)
                      ..+.+-.+.|...+.++......+++|-.||.
T Consensus       293 ~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~  324 (1486)
T PRK04863        293 RELYTSRRQLAAEQYRLVEMARELAELNEAES  324 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555555555555555544

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=88.01  E-value=34  Score=41.93  Aligned_cols=42  Identities=14%  Similarity=0.180  Sum_probs=25.8

Q ss_pred             HhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 004913          565 NEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANLY  610 (724)
Q Consensus       565 ~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~~  610 (724)
                      +.++|+|++|.-=+    .+...+-..=-+|.-|-..|.+|.....
T Consensus       566 kaq~EVERLl~~L~----~~E~EK~~ke~ki~~LekeLek~~~~~~  607 (775)
T PF10174_consen  566 KAQAEVERLLDILR----EAENEKNDKEKKIGELEKELEKAQMHLA  607 (775)
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHhccchh
Confidence            33788888875322    2333344444577778888877777664

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=87.89  E-value=48  Score=36.65  Aligned_cols=209  Identities=12%  Similarity=0.186  Sum_probs=100.6

Q ss_pred             hHhHHHHHHHHHHhhhhcchHHHHHHhhhh------hhH---HHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHh-hHhh
Q 004913          397 KLSRVLLTMERRLVTAKTDMEDLITRLNQE------MTV---KDYLMTKVKDLEVELETTKQKSKETLQQAILSE-RERL  466 (724)
Q Consensus       397 kl~rvl~t~~~rl~~aktdmEDLiaRLnqe------~av---k~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~E-rEr~  466 (724)
                      ...+.+.-++.|+..++.+++..=.+|+.-      ++.   .++...++.+|+..|...+.+-.+...+.--.+ .+-+
T Consensus       168 ~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  247 (444)
T TIGR03017       168 PAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGSSGKDAL  247 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccc
Confidence            344566667777777777777665555431      111   234556777777777666543322211110000 0000


Q ss_pred             hhh--hhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Q 004913          467 TQM--QWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVK  544 (724)
Q Consensus       467 t~m--qwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEakskad~KvLvK  544 (724)
                      ..+  .=-+..|++++.+.|..+......-+..-+....+..      ++..+++++   .++...+....+++...+..
T Consensus       248 ~~~~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~------~i~~l~~~l---~~e~~~~~~~~~~~~~~~~~  318 (444)
T TIGR03017       248 PEVIANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQA------EINSLKSQL---NAEIKKVTSSVGTNSRILKQ  318 (444)
T ss_pred             hhhhcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHH------HHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            000  1113467888888887777652111111111122222      233333322   22233344444445556667


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccccCceecccCCh
Q 004913          545 EVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANLYAEEEDNVILESSSA  624 (724)
Q Consensus       545 EVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~~~ee~~~~~~~~ss~  624 (724)
                      .++.|+.+..++++++..+-....+.+. |++|.+       +.++++   ..|.+|++|-.+..-.+..+--+|++-.+
T Consensus       319 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~-L~r~~~-------~~~~~y---~~ll~r~~e~~l~~~~~~~~~~Vi~~a~~  387 (444)
T TIGR03017       319 REAELREALENQKAKVLELNRQRDEMSV-LQRDVE-------NAQRAY---DAAMQRYTQTRIEAQSNQTDISILNPAVP  387 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-------HHHHHH---HHHHHHHHHHHHHhccCCCceEeeCCCCC
Confidence            7777777777777666655554444432 333332       222222   35667777776665555455555555443


Q ss_pred             h
Q 004913          625 A  625 (724)
Q Consensus       625 ~  625 (724)
                      +
T Consensus       388 P  388 (444)
T TIGR03017       388 P  388 (444)
T ss_pred             C
Confidence            3

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=87.87  E-value=10  Score=37.26  Aligned_cols=97  Identities=26%  Similarity=0.314  Sum_probs=59.6

Q ss_pred             HHHHHHHHHhccccCCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh---cccchhHHHHHHHHHhhhhH
Q 004913          478 QKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAK---SKADIKVLVKEVKFLRSSQI  554 (724)
Q Consensus       478 ~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEak---skad~KvLvKEVKsLR~s~~  554 (724)
                      .|...++.+||.-+.++...             ...+....-.|+..+.....++..   +|+.+--|--|+=.+.+...
T Consensus         3 ~K~l~v~~kLK~~~~e~dsl-------------e~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~   69 (140)
T PF10473_consen    3 EKFLHVEEKLKESESEKDSL-------------EDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELN   69 (140)
T ss_pred             HHHHHHHHHHHHHHHhHhhH-------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677777777654333322             223333333333333333333332   34445557777778888888


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHH
Q 004913          555 GLKQELSQMLNEKSKTEELLQQERQTHNHMKTV  587 (724)
Q Consensus       555 ~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~a  587 (724)
                      .|..||.....+|..+.+.|++.+++..-=...
T Consensus        70 ~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~  102 (140)
T PF10473_consen   70 QLELELDTLRSEKENLDKELQKKQEKVSELESL  102 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888889999999999999999888765544333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF15233 SYCE1: Synaptonemal complex central element protein 1

Probab=87.85  E-value=22  Score=34.96  Aligned_cols=65  Identities=25%  Similarity=0.260  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHhccccCCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHH
Q 004913          476 LRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIG  555 (724)
Q Consensus       476 lr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~  555 (724)
                      |+-.|++.|...+..           ....+++.+  .+ .+.+|||.|-.+|..+=.=-+  -.-|++||.+|-+|..+
T Consensus        67 Lqlhcqeke~eaqrq-----------~~~~~eck~--R~-~fe~qLE~lm~qHKdLwefh~--~erLa~EI~~l~~sKEQ  130 (134)
T PF15233_consen   67 LQLHCQEKESEAQRQ-----------QTLLQECKL--RL-DFEEQLEDLMGQHKDLWEFHM--PERLAREICALESSKEQ  130 (134)
T ss_pred             HHHHHHHHHHHhhhh-----------hhhhHhHHH--HH-HHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHhhHHH
Confidence            555666666555433           223333332  22 456688888877766533223  45699999999999554


Q ss_pred             H
Q 004913          556 L  556 (724)
Q Consensus       556 l  556 (724)
                      |
T Consensus       131 L  131 (134)
T PF15233_consen  131 L  131 (134)
T ss_pred             H
Confidence            3

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=87.78  E-value=11  Score=35.95  Aligned_cols=60  Identities=23%  Similarity=0.333  Sum_probs=39.8

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 004913          543 VKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQAC  605 (724)
Q Consensus       543 vKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC  605 (724)
                      ++++..||....+++.++.++-.+...+...|...+..=+   .-+..|-.|+..+..|+.+-
T Consensus        58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~---~qk~~le~e~~~~~~r~~dL  117 (132)
T PF07926_consen   58 IKELQQLREELQELQQEINELKAEAESAKAELEESEASWE---EQKEQLEKELSELEQRIEDL  117 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHH
Confidence            6777888888888888888777777777666655443222   22344556677777776653

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=87.76  E-value=26  Score=41.72  Aligned_cols=145  Identities=19%  Similarity=0.255  Sum_probs=96.3

Q ss_pred             ccchhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhh
Q 004913          392 LDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQW  471 (724)
Q Consensus       392 ~d~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqw  471 (724)
                      ..|-+.|+-=|.-||.+|+..--|.=+|...|..|--|+.=|..|+-+|+.+|.+.+.+.+..-+-+..-..++      
T Consensus       159 lsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~------  232 (617)
T PF15070_consen  159 LSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQR------  232 (617)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH------
Confidence            35677999999999999999999999999999999999999999999999999999988777765444432221      


Q ss_pred             cHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHh
Q 004913          472 DMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLR  550 (724)
Q Consensus       472 dmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR  550 (724)
                        +.+-..++.|...+              +.+..|++ |-.++..-.+.+..|+    --|++.|+......+|.+-.+
T Consensus       233 --dq~~~~Lqqy~a~~--------------q~l~~e~e~L~~q~l~Qtql~d~lq----~eE~q~~~~~E~~~~ELq~~q  292 (617)
T PF15070_consen  233 --DQYLGHLQQYVAAY--------------QQLASEKEELHKQLLQQTQLMDRLQ----HEESQGKVQLEMAHQELQEAQ  292 (617)
T ss_pred             --HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHH
Confidence              22444444544332              44555565 4334333222233343    225566666656666665443


Q ss_pred             -------hhhHHHHHHHHH
Q 004913          551 -------SSQIGLKQELSQ  562 (724)
Q Consensus       551 -------~s~~~lk~el~~  562 (724)
                             .++.+|+..|+.
T Consensus       293 e~Lea~~qqNqqL~~qls~  311 (617)
T PF15070_consen  293 EHLEALSQQNQQLQAQLSL  311 (617)
T ss_pred             HHHHHHHhhhHHHHHHHHh
Confidence                   444555555553

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=87.66  E-value=10  Score=45.74  Aligned_cols=181  Identities=18%  Similarity=0.233  Sum_probs=100.5

Q ss_pred             CCceEEecccchhhHhHHHHHHHHHHhhhh---cchHHHHHHhhhhhhHHHH----HHhhhhhhHHHHHHHHHhhHHHHH
Q 004913          384 GDAELVIPLDQRHKLSRVLLTMERRLVTAK---TDMEDLITRLNQEMTVKDY----LMTKVKDLEVELETTKQKSKETLQ  456 (724)
Q Consensus       384 ~d~~~vlp~d~r~kl~rvl~t~~~rl~~ak---tdmEDLiaRLnqe~avk~f----L~tKvkDlE~eLe~t~~~~ke~lq  456 (724)
                      ....+++|..|+--+--=+.|++.|+.+|+   |+.-|+-+.|+-+.|=|+-    +-.|+.-|-.-|+-.-.+....+.
T Consensus        54 lq~~~~e~~aqk~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r  133 (916)
T KOG0249|consen   54 LQRDIREAMAQKEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR  133 (916)
T ss_pred             HhhhhhhHHhhhcccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh
Confidence            345677777777777777889999999987   5677788888777665543    223444443333333222222222


Q ss_pred             HHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHH------------
Q 004913          457 QAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLEN------------  523 (724)
Q Consensus       457 Qa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~------------  523 (724)
                      -+.+-  |.=..+|-+|++++.+-..|+.           .+.+......+.+ +-+||..+++.++.            
T Consensus       134 ae~lp--eveael~qr~~al~~aee~~~~-----------~eer~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtv  200 (916)
T KOG0249|consen  134 AETLP--EVEAELAQRNAALTKAEEHSGN-----------IEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTV  200 (916)
T ss_pred             hhhhh--hhHHHHHHHHHHHHHHHHhhcc-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccc
Confidence            11111  2223456666666655444332           2334455555555 55566666654432            


Q ss_pred             ---HHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 004913          524 ---LSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTH  581 (724)
Q Consensus       524 ---l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~  581 (724)
                         |+-+..|. ++++-++..|-.|+.+++++..++..+.++.-.+   -|++.++++|..
T Consensus       201 dErlqlhlker-maAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d---~E~Lr~e~~qL~  257 (916)
T KOG0249|consen  201 DERLQLHLKER-MAALEDKNRLEQELESVKKQLEEMRHDKDKLRTD---IEDLRGELDQLR  257 (916)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHH
Confidence               12222222 3445566777777777777777776666665443   355566666555

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=87.47  E-value=89  Score=39.24  Aligned_cols=105  Identities=28%  Similarity=0.387  Sum_probs=61.2

Q ss_pred             hhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccc-
Q 004913          412 AKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSK-  490 (724)
Q Consensus       412 aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~-  490 (724)
                      .||.||               |-..|+||+.+|||.|.|-+|--..  +-|=||+.+=-=-++|+|.|.|+--.-|+-+ 
T Consensus       223 skte~e---------------Lr~QvrdLtEkLetlR~kR~EDk~K--l~ElekmkiqleqlqEfkSkim~qqa~Lqrel  285 (1243)
T KOG0971|consen  223 SKTEEE---------------LRAQVRDLTEKLETLRLKRAEDKAK--LKELEKMKIQLEQLQEFKSKIMEQQADLQREL  285 (1243)
T ss_pred             ccchHH---------------HHHHHHHHHHHHHHHHhhhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            688888               6666999999999999998876444  3344444332223566777766654444433 


Q ss_pred             cCCCCcc-----------------cchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhh
Q 004913          491 QDGNPHA-----------------ESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEA  533 (724)
Q Consensus       491 ~~~~~~~-----------------e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEa  533 (724)
                      ++.+--.                 ..+.+=+.-+|+ ..+..+..+..||.|+++.+|+|.
T Consensus       286 ~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~delet  346 (1243)
T KOG0971|consen  286 KRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELET  346 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111000                 001112223444 455666777777777777777764

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=87.44  E-value=0.47  Score=56.10  Aligned_cols=140  Identities=19%  Similarity=0.230  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh----HHHHHHHHHHHHHHHHHH
Q 004913          452 KETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN----VLQELDATKEQLENLSKR  527 (724)
Q Consensus       452 ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~----~~qel~~~~~~~e~l~k~  527 (724)
                      .+.|++=+..-+-++..    ||.++.++.++|...+..+++...-..-.+..-.+..    +...+...|...-.|..+
T Consensus       283 ~elLeEe~~sLq~kl~~----~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek  358 (722)
T PF05557_consen  283 VELLEEEKRSLQRKLER----LEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEK  358 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            33344434333344443    4666777776666666555554433332222111111    445555555555555555


Q ss_pred             HHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhc
Q 004913          528 YEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACN  606 (724)
Q Consensus       528 ~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~  606 (724)
                      ++++++           +|+.|+....+|..|+.++..+-.+++.-+..-+....+..--+.=+..||..||+.|...-
T Consensus       359 ~g~~~~-----------~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd  426 (722)
T PF05557_consen  359 LGSLQS-----------ELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYD  426 (722)
T ss_dssp             -------------------------------------------------------------------------------
T ss_pred             HhhhhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            555543           45556666666666666665555555554443333222222333345689999999998743

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=87.32  E-value=61  Score=37.23  Aligned_cols=45  Identities=20%  Similarity=0.299  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHH
Q 004913          517 TKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELS  561 (724)
Q Consensus       517 ~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~  561 (724)
                      -++.+.-+.++...++++.-+++.-.-+..+.|+.....|++++.
T Consensus       197 q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ia  241 (420)
T COG4942         197 QQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIA  241 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            333444444555555555555555555555555555555555544

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=86.92  E-value=56  Score=42.23  Aligned_cols=114  Identities=12%  Similarity=0.159  Sum_probs=66.7

Q ss_pred             hHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCc---ccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 004913          463 RERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPH---AESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKAD  538 (724)
Q Consensus       463 rEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~---~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad  538 (724)
                      .+.+.+..=.++++++.+.+....++....-...   .....+.+.+..+ ..+++..+++++..++.++.++++...+.
T Consensus       843 ~~~l~~~~~aL~~y~~~l~~l~~~~~~L~~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~  922 (1353)
T TIGR02680       843 PDALEAVGLALKRFGDHLHTLEVAVRELRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAM  922 (1353)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555556677777777777666655211111   1122233333444 55556666666666666666677766666


Q ss_pred             hhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHH
Q 004913          539 IKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQ  576 (724)
Q Consensus       539 ~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~  576 (724)
                      +.-|-.++..+|....++.+++..+-++...+++-+..
T Consensus       923 ~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~  960 (1353)
T TIGR02680       923 VDEIRARLAETRAALASGGRELPRLAEALATAEEARGR  960 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666777777777777777777666666555544443

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=86.83  E-value=52  Score=35.93  Aligned_cols=202  Identities=16%  Similarity=0.263  Sum_probs=118.8

Q ss_pred             chhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHh-hhhhhhc
Q 004913          394 QRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERER-LTQMQWD  472 (724)
Q Consensus       394 ~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr-~t~mqwd  472 (724)
                      +..++.+=+..+++++.+..-+.+.|.+-++..+.+|+=|-.--+.|-..-...+..++.....---. |.- .+.    
T Consensus        37 e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~k-R~el~~k----  111 (309)
T PF09728_consen   37 EMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEK-RKELSEK----  111 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH----
Confidence            34556677788999999999999999999999999998877666666555544444333221110000 111 111    


Q ss_pred             HHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHH------HHh-------------
Q 004913          473 MEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYE------ELE-------------  532 (724)
Q Consensus       473 meelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~------elE-------------  532 (724)
                         +...+.++...+...    .   ........||. +.+.+..+-+|+|.-.++++      ++|             
T Consensus       112 ---Fq~~L~dIq~~~ee~----~---~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~  181 (309)
T PF09728_consen  112 ---FQATLKDIQAQMEEQ----S---ERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQE  181 (309)
T ss_pred             ---HHHHHHHHHHHHHhc----c---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence               111111111111111    0   11122344444 44444444444442221111      111             


Q ss_pred             --hhcccchhHHHH-------HHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHH-------HHhhhhHHHHHHHHHHHHH
Q 004913          533 --AKSKADIKVLVK-------EVKFLRSSQIGLKQELSQMLNEKSKTEELLQQE-------RQTHNHMKTVREKLLHECR  596 (724)
Q Consensus       533 --akskad~KvLvK-------EVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~E-------r~~~e~~~~ar~kllhec~  596 (724)
                        .+..+..+.+..       .|..|+.+-.+|+..|+-|..-=.+++..|.+=       |+-.+...-.-++|=.|+.
T Consensus       182 ~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~  261 (309)
T PF09728_consen  182 EAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQ  261 (309)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              112222334444       788888899999999999998878888877653       3344556667788999999


Q ss_pred             HHHHHHhhhccccc
Q 004913          597 ILLNRFQACNANLY  610 (724)
Q Consensus       597 iL~~rLqEC~~~~~  610 (724)
                      .++.|--.||..++
T Consensus       262 ~~k~k~e~~n~~l~  275 (309)
T PF09728_consen  262 TWKSKWEKSNKALI  275 (309)
T ss_pred             HHHHHHHHHhHHHH
Confidence            99999999999775

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=86.74  E-value=25  Score=41.89  Aligned_cols=64  Identities=8%  Similarity=0.105  Sum_probs=32.5

Q ss_pred             hhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhH-HHHh-HHHHHHHHHHHHHHHHHHHHHHh
Q 004913          469 MQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTV-KDKN-VLQELDATKEQLENLSKRYEELE  532 (724)
Q Consensus       469 mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~-~e~~-~~qel~~~~~~~e~l~k~~~elE  532 (724)
                      ++=-++++|++..+.|.+|+..+............+. ++.. +-+++..++.+....+.+++.++
T Consensus       199 L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~  264 (754)
T TIGR01005       199 LAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVK  264 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334556888888888888887444333322222222 2223 44444444444444444444443

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.61  E-value=82  Score=38.95  Aligned_cols=175  Identities=17%  Similarity=0.241  Sum_probs=82.8

Q ss_pred             hhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHH
Q 004913          435 TKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQE  513 (724)
Q Consensus       435 tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qe  513 (724)
                      .|-+.||.+-|.-+.|-.|.++- .-.|=||.-|++|+-  .|  .+||--.-..+|.........+..+..|.+ |-..
T Consensus       378 erQReiE~qrEEerkkeie~rEa-ar~ElEkqRqlewEr--ar--~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k  452 (1118)
T KOG1029|consen  378 ERQREIERQREEERKKEIERREA-AREELEKQRQLEWER--AR--RQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFK  452 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH--HH--HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777777777777776664 456688888888852  33  333322222223333333344444444444 3222


Q ss_pred             HHHHHHHHHH----HHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHH--
Q 004913          514 LDATKEQLEN----LSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTV--  587 (724)
Q Consensus       514 l~~~~~~~e~----l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~a--  587 (724)
                      +..+-..|.+    +..+..++|.- ..++..-.-|++-|-....|+.+-|-+..-||.+++.-|.+-. -.-....+  
T Consensus       453 ~qqls~kl~Dvr~~~tt~kt~ie~~-~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q-~a~~~~~~~~  530 (1118)
T KOG1029|consen  453 LQQLSGKLQDVRVDITTQKTEIEEV-TKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQ-SAHKETTQRK  530 (1118)
T ss_pred             HHHHhhhhhhheeccchHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh-hhccCcchHH
Confidence            2222222222    22334444432 2234444455555555555666666666666666655442211 11111112  


Q ss_pred             --HHHHHHHHHHHHHHHhhhcccccccccCc
Q 004913          588 --REKLLHECRILLNRFQACNANLYAEEEDN  616 (724)
Q Consensus       588 --r~kllhec~iL~~rLqEC~~~~~~ee~~~  616 (724)
                        ..+...+-..+|++|++---++.-|-+.+
T Consensus       531 s~L~aa~~~ke~irq~ikdqldelskE~esk  561 (1118)
T KOG1029|consen  531 SELEAARRKKELIRQAIKDQLDELSKETESK  561 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              22222334456666666555554444433

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=86.03  E-value=59  Score=35.77  Aligned_cols=78  Identities=17%  Similarity=0.295  Sum_probs=46.4

Q ss_pred             hhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Q 004913          469 MQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKF  548 (724)
Q Consensus       469 mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKs  548 (724)
                      -+=+.+.+.+.....|.+.++.+          -++..|.++.|++..++++++...+..+.     .+..+-|..|++.
T Consensus       105 ~~~~~~~ler~i~~Le~~~~T~~----------L~~e~E~~lvq~I~~L~k~le~~~k~~e~-----~~~~~el~aei~~  169 (294)
T COG1340         105 GGRSIKSLEREIERLEKKQQTSV----------LTPEEERELVQKIKELRKELEDAKKALEE-----NEKLKELKAEIDE  169 (294)
T ss_pred             cCCCHHHHHHHHHHHHHHHHhcC----------CChHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence            34456667777777777766651          34455666888888888888887765443     2334444444444


Q ss_pred             HhhhhHHHHHHHH
Q 004913          549 LRSSQIGLKQELS  561 (724)
Q Consensus       549 LR~s~~~lk~el~  561 (724)
                      ||..-.++..++.
T Consensus       170 lk~~~~e~~eki~  182 (294)
T COG1340         170 LKKKAREIHEKIQ  182 (294)
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444444333

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=85.93  E-value=45  Score=37.58  Aligned_cols=20  Identities=20%  Similarity=0.456  Sum_probs=11.4

Q ss_pred             hHHHHHHhhhhhhHHHHHHH
Q 004913          428 TVKDYLMTKVKDLEVELETT  447 (724)
Q Consensus       428 avk~fL~tKvkDlE~eLe~t  447 (724)
                      +..+||...++.++.+|+..
T Consensus       161 ~~~~fl~~ql~~~~~~L~~a  180 (498)
T TIGR03007       161 SAQRFIDEQIKTYEKKLEAA  180 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            45667666555555555544

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=85.75  E-value=49  Score=41.60  Aligned_cols=39  Identities=15%  Similarity=0.216  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 004913          567 KSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANL  609 (724)
Q Consensus       567 K~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~  609 (724)
                      |.++|-+..++.+++.+...|++.++    -++++||+-..-.
T Consensus       324 ~~~le~lk~~~~~rq~~i~~~~k~i~----~~q~el~~~~~~e  362 (1072)
T KOG0979|consen  324 KNKLESLKKAAEKRQKRIEKAKKMIL----DAQAELQETEDPE  362 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhhhcCCcc
Confidence            34555556666666666666666554    5888888866543

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=85.74  E-value=0.24  Score=58.45  Aligned_cols=160  Identities=19%  Similarity=0.234  Sum_probs=0.0

Q ss_pred             hHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHH---HHHHHHhccccCCCCcccchhhhh
Q 004913          428 TVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKS---LEMEWKLKSKQDGNPHAESMEEST  504 (724)
Q Consensus       428 avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~---~e~E~~lks~~~~~~~~e~~~~s~  504 (724)
                      +.++=+..++..+|.++...++++.+-...|     +.+..++=+||+||.+.   .-+|..+..+.           .=
T Consensus       260 ~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A-----~~a~~LrDElD~lR~~a~r~~klE~~ve~YK-----------kK  323 (713)
T PF05622_consen  260 EQRDDLKIELEELEKEIDELRQENEELQAEA-----REARALRDELDELREKADRADKLENEVEKYK-----------KK  323 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-----------HH
Confidence            3444445667777777877777776543332     45666777777777643   33555554441           11


Q ss_pred             HHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 004913          505 VKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNH  583 (724)
Q Consensus       505 ~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~  583 (724)
                      .++.+ +..++...+++...|.+....+|.+.+.=. -+-..+-.++++..+|++++......+..++.=+.+=+++.+.
T Consensus       324 Led~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~-~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~  402 (713)
T PF05622_consen  324 LEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKAR-ALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEA  402 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22233 455555555555555566666666655422 2334566667777777777666554444333333332333334


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh
Q 004913          584 MKTVREKLLHECRILLNRFQA  604 (724)
Q Consensus       584 ~~~ar~kllhec~iL~~rLqE  604 (724)
                      ....+..++.|...|+.++.+
T Consensus       403 l~~eke~l~~e~~~L~e~~ee  423 (713)
T PF05622_consen  403 LEEEKERLQEERDSLRETNEE  423 (713)
T ss_dssp             ---------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            444555667777666665543

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=85.73  E-value=6.8  Score=40.49  Aligned_cols=69  Identities=12%  Similarity=0.196  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004913          510 VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQER  578 (724)
Q Consensus       510 ~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er  578 (724)
                      +.+|+..+++++.++.++.++.-+.-.-..+-+-+++..|++.+.+|++||..+-++-..++.-+...+
T Consensus        98 le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~  166 (206)
T PRK10884         98 LENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ  166 (206)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444433333333333334555666777777777777776666555555544443

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=85.15  E-value=32  Score=41.21  Aligned_cols=136  Identities=18%  Similarity=0.188  Sum_probs=72.6

Q ss_pred             cHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHh
Q 004913          472 DMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLR  550 (724)
Q Consensus       472 dmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR  550 (724)
                      .++++++++.+.|..|+..+..+.....     ..|.+ +++++...+.|+..|+.+..++......+=    =+|++|+
T Consensus       275 qL~~l~~~L~~aE~~l~~fr~~~~~~d~-----~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~h----P~v~~l~  345 (726)
T PRK09841        275 QLPEVRSELDQAEEKLNVYRQQRDSVDL-----NLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDH----PTYRALL  345 (726)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----chHHHHH
Confidence            3444666666677666666443332222     23334 566666677777777766666544322221    1355666


Q ss_pred             hhhHHHHHHHHHHHHhHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHhhhcccccccccCceecccC
Q 004913          551 SSQIGLKQELSQMLNEKSKTEELLQQERQT--HNHMKTVREKLLHECRILLNRFQACNANLYAEEEDNVILESS  622 (724)
Q Consensus       551 ~s~~~lk~el~~~~~eK~e~E~~l~~Er~~--~e~~~~ar~kllhec~iL~~rLqEC~~~~~~ee~~~~~~~~s  622 (724)
                      .+...|++++.++-.   ++..+-..|++-  -++...+.+.++   ..|.+|.||-.+..-.+..+--+||.-
T Consensus       346 ~~~~~L~~~~~~l~~---~~~~~p~~e~~~~~L~R~~~~~~~lY---~~lL~r~~e~~i~~a~~~~~~rIid~A  413 (726)
T PRK09841        346 EKRQTLEQERKRLNK---RVSAMPSTQQEVLRLSRDVEAGRAVY---LQLLNRQQELSISKSSAIGNVRIIDPA  413 (726)
T ss_pred             HHHHHHHHHHHHHHH---HHHhccHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccCCCceeeccCC
Confidence            666666666655422   233333333322  223333444444   357889999888776665555555543

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=85.13  E-value=15  Score=33.37  Aligned_cols=91  Identities=22%  Similarity=0.303  Sum_probs=49.7

Q ss_pred             cHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHh
Q 004913          472 DMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLR  550 (724)
Q Consensus       472 dmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR  550 (724)
                      |+.-+|.....+..+++.........+ ....+.++.- +..+++.++.+-..++++...+-.+. .+..-|..|+|.|+
T Consensus         3 Dik~ir~n~e~v~~~l~~R~~~~~~vd-~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~-~~~~~l~~e~~~lk   80 (108)
T PF02403_consen    3 DIKLIRENPEEVRENLKKRGGDEEDVD-EIIELDQERRELQQELEELRAERNELSKEIGKLKKAG-EDAEELKAEVKELK   80 (108)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT-CCTHHHHHHHHHHH
T ss_pred             CHHHHHhCHHHHHHHHHHcCCCHhhHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc-ccHHHHHHHHHHHH
Confidence            555677777777777766531111111 1123333333 55555555555555555555543333 56666777777777


Q ss_pred             hhhHHHHHHHHHHH
Q 004913          551 SSQIGLKQELSQML  564 (724)
Q Consensus       551 ~s~~~lk~el~~~~  564 (724)
                      ....++.+++.+.-
T Consensus        81 ~~i~~le~~~~~~e   94 (108)
T PF02403_consen   81 EEIKELEEQLKELE   94 (108)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            77666666665543

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=84.78  E-value=71  Score=37.29  Aligned_cols=194  Identities=23%  Similarity=0.339  Sum_probs=112.1

Q ss_pred             CcccccccccccccccCCCCCCCCccccCCCCCCCCCCCCCCcccccccccccccCCC---cccccCCceEEecccchhh
Q 004913          321 KVIGHARKLSADSVRSDASSIRGSEISNFGIPNSSADGSPGLHRCAEVSSSREILGNS---DLQFSGDAELVIPLDQRHK  397 (724)
Q Consensus       321 ~~~~h~r~~s~es~~sd~ss~~~se~s~~~~~~~~~d~~~dl~~~~~~~~~~~~~~~~---~~~~~~d~~~vlp~d~r~k  397 (724)
                      ..+.|.+.+..|.+.+-..   .|-.|..||+.+.|+                +..+.   |++.  ...-.=|+++---
T Consensus       256 ~sv~~qkev~~e~~e~p~~---~s~wspagis~~~~a----------------~~e~c~~~d~eq--s~Eslqpleedma  314 (527)
T PF15066_consen  256 MSVSHQKEVTVEGVESPEI---ASTWSPAGISWSSGA----------------SQEDCKTPDTEQ--SFESLQPLEEDMA  314 (527)
T ss_pred             cccchhhhcchhcccCccc---ccCCCCCcccccccc----------------hhhhccCCCHHh--hhhccCCcHHHHH
Confidence            5688888888888866221   222344455432222                22222   2221  1112237788888


Q ss_pred             HhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHH
Q 004913          398 LSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELR  477 (724)
Q Consensus       398 l~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr  477 (724)
                      ||-||.+|+.    ..+.-+-+|.-|.-.   .-||-.|||+|-.  .++|        |-|+.  .+|..+-=+||||-
T Consensus       315 LNEvL~kLk~----tn~kQq~~IqdLq~s---N~yLe~kvkeLQ~--k~~k--------Qqvfv--DiinkLk~niEeLI  375 (527)
T PF15066_consen  315 LNEVLQKLKH----TNRKQQNRIQDLQCS---NLYLEKKVKELQM--KITK--------QQVFV--DIINKLKENIEELI  375 (527)
T ss_pred             HHHHHHHHHh----hhHHHHHHHHHhhhc---cHHHHHHHHHHHH--Hhhh--------hhHHH--HHHHHHHHHHHHHH
Confidence            9999987664    444455556555443   4599999998853  3333        33443  36666555555542


Q ss_pred             HHHHHHHHHhccccCCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHH
Q 004913          478 QKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLK  557 (724)
Q Consensus       478 ~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk  557 (724)
                            |-|++        +-+.      .+++-.-|...++-+.+-+|++.|    ||++++-|-=|||.+......|+
T Consensus       376 ------edKY~--------viLE------Knd~~k~lqnLqe~la~tqk~LqE----sr~eKetLqlelkK~k~nyv~LQ  431 (527)
T PF15066_consen  376 ------EDKYR--------VILE------KNDIEKTLQNLQEALANTQKHLQE----SRNEKETLQLELKKIKANYVHLQ  431 (527)
T ss_pred             ------HhHhH--------hhhh------hhhHHHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHhhhHHHHH
Confidence                  22322        2232      233444445555666666676654    78889999999999998888887


Q ss_pred             HHHHHHHHhH-------HHHHHHHHHHH
Q 004913          558 QELSQMLNEK-------SKTEELLQQER  578 (724)
Q Consensus       558 ~el~~~~~eK-------~e~E~~l~~Er  578 (724)
                      ..-..-|++|       .|++++|++-.
T Consensus       432 Ery~~eiQqKnksvsqclEmdk~LskKe  459 (527)
T PF15066_consen  432 ERYMTEIQQKNKSVSQCLEMDKTLSKKE  459 (527)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhhhhH
Confidence            6655555544       46677766543

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=84.61  E-value=1e+02  Score=37.14  Aligned_cols=41  Identities=37%  Similarity=0.349  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHH
Q 004913          521 LENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELS  561 (724)
Q Consensus       521 ~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~  561 (724)
                      ++.++.-+.+..++++++++-|.+|+|+.+.-..+|+..|.
T Consensus       301 i~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~  341 (629)
T KOG0963|consen  301 IERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLN  341 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444455555556666666666666666655555555543

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=84.59  E-value=20  Score=40.92  Aligned_cols=32  Identities=22%  Similarity=0.457  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Q 004913          513 ELDATKEQLENLSKRYEELEAKSKADIKVLVK  544 (724)
Q Consensus       513 el~~~~~~~e~l~k~~~elEakskad~KvLvK  544 (724)
                      +++..++++.++.+.+..+|.+-++++-+|++
T Consensus        88 ~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~  119 (420)
T COG4942          88 DLKKLRKQIADLNARLNALEVQEREQRRRLAE  119 (420)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444443

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=84.33  E-value=41  Score=34.64  Aligned_cols=29  Identities=10%  Similarity=0.098  Sum_probs=18.0

Q ss_pred             ceecccCChhhHHHhhcccchhHHHHHHH
Q 004913          616 NVILESSSAADALALLTSSDDQISLLITE  644 (724)
Q Consensus       616 ~~~~~~ss~~da~dlL~tsDnrI~lLlaE  644 (724)
                      .+.|-+-++.+.-+.....++.|+--|+=
T Consensus       175 ~~~I~~~~lp~~~~~~~~~~~~isaALgy  203 (302)
T PF10186_consen  175 EYTICGLPLPNSRDFNSLPDEEISAALGY  203 (302)
T ss_pred             CeeecCcccCCCcccccCCHHHHHHHHHH
Confidence            34444445667667777778888665543

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=84.08  E-value=52  Score=40.68  Aligned_cols=27  Identities=19%  Similarity=0.529  Sum_probs=14.7

Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHhh
Q 004913          578 RQTHNHMKTVREKLLHECRILLNRFQA  604 (724)
Q Consensus       578 r~~~e~~~~ar~kllhec~iL~~rLqE  604 (724)
                      +--.++++..|+.-+.-|--+-.|+|.
T Consensus       444 k~Lke~aegsrrraIeQcnemv~rir~  470 (1265)
T KOG0976|consen  444 KVLKEHAEGSRRRAIEQCNEMVDRIRA  470 (1265)
T ss_pred             HHHHHhhhhhHhhHHHHHHHHHHHHHH
Confidence            333455555566556666555555553

>PRK01156 chromosome segregation protein; Provisional

Probab=84.03  E-value=1.1e+02  Score=37.26  Aligned_cols=61  Identities=28%  Similarity=0.427  Sum_probs=38.3

Q ss_pred             cccchhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHH
Q 004913          391 PLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKE  453 (724)
Q Consensus       391 p~d~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke  453 (724)
                      |.+.+.-+.+++++=  ++.++-..+.+.+..+..+..--+++...+++++.+|+.....-++
T Consensus       148 ~~~r~~~ld~~~~~~--~~~~~~~~~~~~~~~~~~ei~~le~~~~~l~~~e~eL~~~~~~i~e  208 (895)
T PRK01156        148 PAQRKKILDEILEIN--SLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIAD  208 (895)
T ss_pred             HHHHHHHHHHHhChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555432  3445555566777777777777777777777777777665554444

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=83.91  E-value=25  Score=34.34  Aligned_cols=50  Identities=22%  Similarity=0.226  Sum_probs=24.0

Q ss_pred             HHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHH
Q 004913          405 MERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKET  454 (724)
Q Consensus       405 ~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~  454 (724)
                      .+.|...+.+.+-+|=.|+-+-.-==.-|+.|+.-||.+|+.+..+-++.
T Consensus        12 a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~   61 (143)
T PF12718_consen   12 AQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEA   61 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444433333332222222346677777777776665554443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=83.15  E-value=29  Score=44.01  Aligned_cols=100  Identities=17%  Similarity=0.124  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHh-----hhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhH
Q 004913          510 VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLR-----SSQIGLKQELSQMLNEKSKTEELLQQERQTHNHM  584 (724)
Q Consensus       510 ~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR-----~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~  584 (724)
                      .+++.+..++..+.+++..+...++.+.-.+-|.++-+..+     -+..+|.|.+.+...+-.++.+-++.+-.+....
T Consensus        56 ~l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~  135 (1109)
T PRK10929         56 WLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRAREI  135 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            45555555555566666655555554444444443322222     2468899999999999888888888875444222


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccc
Q 004913          585 KTVREKLLHECRILLNRFQACNANL  609 (724)
Q Consensus       585 ~~ar~kllhec~iL~~rLqEC~~~~  609 (724)
                      ..+-..+=.-..-.+.||||-+..+
T Consensus       136 ~~~l~~~pq~~~~~~~~l~~i~~~L  160 (1109)
T PRK10929        136 SDSLSQLPQQQTEARRQLNEIERRL  160 (1109)
T ss_pred             HHHHhhchhhHHHHHHHHHHHHHHH
Confidence            2222111122245778888877654

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=82.95  E-value=28  Score=34.37  Aligned_cols=87  Identities=24%  Similarity=0.228  Sum_probs=64.0

Q ss_pred             HHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-H
Q 004913          432 YLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-V  510 (724)
Q Consensus       432 fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~  510 (724)
                      -|+.|+.+=..||...+.++..++|...-. ||....+..++..++..+.+.+..+...              ..+.. +
T Consensus        53 ~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~-keKl~~~~~~~~~l~~~l~~~~~~~~~~--------------r~~l~~~  117 (177)
T PF13870_consen   53 QLNEKIEERNKELLKLKKKIGKTVQILTHV-KEKLHFLSEELERLKQELKDREEELAKL--------------REELYRV  117 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH
Confidence            367888888899999999999999877776 9999999999988888888777665544              33334 4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Q 004913          511 LQELDATKEQLENLSKRYEELEA  533 (724)
Q Consensus       511 ~qel~~~~~~~e~l~k~~~elEa  533 (724)
                      ..+.+.++.+...|+.+.+-+.+
T Consensus       118 k~~r~k~~~~~~~l~~~~~~~~~  140 (177)
T PF13870_consen  118 KKERDKLRKQNKKLRQQGGLLGV  140 (177)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCC
Confidence            44555666666666655555443

>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily

Probab=82.35  E-value=83  Score=34.53  Aligned_cols=83  Identities=19%  Similarity=0.082  Sum_probs=59.7

Q ss_pred             hhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhh---------hHHHHHHHHHhhHHHHHHHHHHh---h
Q 004913          396 HKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKD---------LEVELETTKQKSKETLQQAILSE---R  463 (724)
Q Consensus       396 ~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkD---------lE~eLe~t~~~~ke~lqQa~l~E---r  463 (724)
                      ..+.+.|..+..-....++.-+..-..|+.|..+-+=+-+|-..         +=..|-+.-.+-+..|+||.-.-   |
T Consensus        75 ~~l~~~l~~L~~l~~~~~~~L~e~~~~Ld~E~~eD~~~R~kyg~rWtr~pS~~~~~~l~~~i~~~r~~L~~A~~sD~~v~  154 (339)
T cd09238          75 AALEGELPRLRELRRVCTELLAAAQESLEAEATEDSAARTQYGTAWTRPPSATLTKNLWERLNRFRVNLEQAGDSDESLR  154 (339)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            56677888888888888888888888999999988877777644         44577777788888999987442   3


Q ss_pred             HhhhhhhhcHHHHHH
Q 004913          464 ERLTQMQWDMEELRQ  478 (724)
Q Consensus       464 Er~t~mqwdmeelr~  478 (724)
                      ++|.+..=+++.|..
T Consensus       155 ~k~~~~~~~l~~L~~  169 (339)
T cd09238         155 RRIEDAMDGMLILDD  169 (339)
T ss_pred             HHHHHHHHHHHhcCc
Confidence            444444445555533

This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=82.20  E-value=1.1e+02  Score=35.73  Aligned_cols=59  Identities=20%  Similarity=0.115  Sum_probs=38.1

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004913          544 KEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRF  602 (724)
Q Consensus       544 KEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rL  602 (724)
                      +|....|.-...+|.|+.+.-..-..+|.=|+.=.+..+-++++-+.-+-++.+|...-
T Consensus       386 ~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~  444 (522)
T PF05701_consen  386 KEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKALSESE  444 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            34444455555555566666555555665566555666678888888899998876544

Several sequences in this family are described as being myosin heavy chain-like.

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=81.85  E-value=40  Score=33.22  Aligned_cols=11  Identities=27%  Similarity=0.401  Sum_probs=4.9

Q ss_pred             HHHHHHHHHHH
Q 004913          591 LLHECRILLNR  601 (724)
Q Consensus       591 llhec~iL~~r  601 (724)
                      .+++...+++|
T Consensus       180 ~~~~~~~l~~~  190 (191)
T PF04156_consen  180 KIQELQELLEQ  190 (191)
T ss_pred             HHHHHHHHHhh
Confidence            34444444444

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PRK10698 phage shock protein PspA; Provisional

Probab=81.78  E-value=61  Score=33.76  Aligned_cols=163  Identities=18%  Similarity=0.284  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhh----------
Q 004913          400 RVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQM----------  469 (724)
Q Consensus       400 rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~m----------  469 (724)
                      -++--|+.=++.+++..-.++|.--+...=-+=+...+.++|.--+.-.++.+|.|-...|.++..+...          
T Consensus        31 q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~  110 (222)
T PRK10698         31 LMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTL  110 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444445555444444444333322222333344455555555556667777777766666554332          


Q ss_pred             -hhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHhHHHH-----HHHHHHHHHHHHHHHHHHhhhcccc----h
Q 004913          470 -QWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQE-----LDATKEQLENLSKRYEELEAKSKAD----I  539 (724)
Q Consensus       470 -qwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~qe-----l~~~~~~~e~l~k~~~elEakskad----~  539 (724)
                       +=-.+.|..++..++.+|+.-...+...--....+.....+-+.     ...+-..|+.+..+.++.||++.|.    .
T Consensus       111 ~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea~aea~~~~~~  190 (222)
T PRK10698        111 VDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAESHGFGKQ  190 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhHhhccCC
Confidence             11223333333334433333321111111111111111111111     1223346777778888888888774    2


Q ss_pred             hHHHHHHHHHhhhhHHHHHHHHHH
Q 004913          540 KVLVKEVKFLRSSQIGLKQELSQM  563 (724)
Q Consensus       540 KvLvKEVKsLR~s~~~lk~el~~~  563 (724)
                      +-|-.|+..|.. ..++..||..+
T Consensus       191 ~~l~~e~~~le~-~~~ve~ELa~L  213 (222)
T PRK10698        191 KSLDQQFAELKA-DDEISEQLAAL  213 (222)
T ss_pred             CCHHHHHHHhhc-cchHHHHHHHH
Confidence            236666666643 23455555443

>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []

Probab=81.71  E-value=95  Score=34.76  Aligned_cols=129  Identities=22%  Similarity=0.333  Sum_probs=72.6

Q ss_pred             HHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh
Q 004913          430 KDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN  509 (724)
Q Consensus       430 k~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~  509 (724)
                      |..+..=+...=..|.+-.++.-..|.+=|-.-.+--++|+|...+......+||..+...           +.++.++.
T Consensus       224 R~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L-----------~~ai~~k~  292 (384)
T PF03148_consen  224 REDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDL-----------EKAIRDKE  292 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-----------HHHHHHHH
Confidence            3333333333333444444444444444444445556677888888888888888777655           55555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHH
Q 004913          510 VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEE  572 (724)
Q Consensus       510 ~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~  572 (724)
                      -  -|..++--|++-..+ =-+|.=--.=-.-|+.||+.|+.+...|++.|.++-.....|.+
T Consensus       293 ~--~lkvaqTRL~~R~~R-P~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~  352 (384)
T PF03148_consen  293 G--PLKVAQTRLENRTQR-PNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLER  352 (384)
T ss_pred             h--hHHHHHHHHhhHhcC-CchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1  122333334444432 11222111222458999999999999999988887666555544

The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=81.64  E-value=28  Score=37.55  Aligned_cols=31  Identities=16%  Similarity=0.079  Sum_probs=15.1

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHhHHHHHH
Q 004913          542 LVKEVKFLRSSQIGLKQELSQMLNEKSKTEE  572 (724)
Q Consensus       542 LvKEVKsLR~s~~~lk~el~~~~~eK~e~E~  572 (724)
                      .-.++..+++....++.++.++-.+..+++.
T Consensus       201 ~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~  231 (423)
T TIGR01843       201 LERERAEAQGELGRLEAELEVLKRQIDELQL  231 (423)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555555555555555555444444433

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PRK11519 tyrosine kinase; Provisional

Probab=81.58  E-value=51  Score=39.53  Aligned_cols=135  Identities=15%  Similarity=0.156  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhh
Q 004913          473 MEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRS  551 (724)
Q Consensus       473 meelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~  551 (724)
                      ++++++++.+.|.+|+..+..+.....     ..|.+ .++.+...+.|+-.++.+..++......+-=    .|++|..
T Consensus       276 l~~l~~~L~~aE~~l~~fr~~~~~vd~-----~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP----~v~~l~~  346 (719)
T PRK11519        276 LPEVRSRLDVAENKLNAFRQDKDSVDL-----PLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHP----AYRTLLE  346 (719)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc----HHHHHHH
Confidence            344666666666666666444333322     23333 5555566666666666555555433222110    1334444


Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccccCceecccC
Q 004913          552 SQIGLKQELSQMLNEKSKTEELLQQER--QTHNHMKTVREKLLHECRILLNRFQACNANLYAEEEDNVILESS  622 (724)
Q Consensus       552 s~~~lk~el~~~~~eK~e~E~~l~~Er--~~~e~~~~ar~kllhec~iL~~rLqEC~~~~~~ee~~~~~~~~s  622 (724)
                      +...|+++++++-.+   +..+-..|+  .+-++...+.++++.   .|.+|++|-.+..-....+--+||.-
T Consensus       347 ~~~~L~~~~~~l~~~---~~~lp~~e~~~~~L~Re~~~~~~lY~---~lL~r~~e~~i~~a~~~~~~rIid~A  413 (719)
T PRK11519        347 KRKALEDEKAKLNGR---VTAMPKTQQEIVRLTRDVESGQQVYM---QLLNKQQELKITEASTVGDVRIVDPA  413 (719)
T ss_pred             HHHHHHHHHHHHHHH---HHhccHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHhcCCCCCeEEEecC
Confidence            444455544443222   222222222  222333344444443   56788888777766555555555543

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=81.45  E-value=23  Score=37.33  Aligned_cols=51  Identities=18%  Similarity=0.307  Sum_probs=28.9

Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 004913          553 QIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQ  603 (724)
Q Consensus       553 ~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLq  603 (724)
                      -+..-+||-+...++..+|.++.+=+.-.++.+..=.++++|+.-|.+.+-
T Consensus        48 r~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in   98 (230)
T PF10146_consen   48 RMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEIN   98 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445566777777777777744333333333333556677777766543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=81.35  E-value=1.4e+02  Score=36.49  Aligned_cols=52  Identities=21%  Similarity=0.263  Sum_probs=34.5

Q ss_pred             ecccchh----hHhHHHHHHHHHHhhh---------hcchHHHHHHhhhhhhHHHHHHhhhhhhH
Q 004913          390 IPLDQRH----KLSRVLLTMERRLVTA---------KTDMEDLITRLNQEMTVKDYLMTKVKDLE  441 (724)
Q Consensus       390 lp~d~r~----kl~rvl~t~~~rl~~a---------ktdmEDLiaRLnqe~avk~fL~tKvkDlE  441 (724)
                      +|.+++.    |.++.+..+-+|+..+         |..++|.-.|.-|....++.|-.|++-..
T Consensus       386 ~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k  450 (698)
T KOG0978|consen  386 LLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFK  450 (698)
T ss_pred             CCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            5777888    5555555555544322         35667777777788888888887777654

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=81.30  E-value=1.3e+02  Score=37.90  Aligned_cols=15  Identities=7%  Similarity=0.129  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHhhhcc
Q 004913          593 HECRILLNRFQACNA  607 (724)
Q Consensus       593 hec~iL~~rLqEC~~  607 (724)
                      .+...|.+.+.++.-
T Consensus       380 ~~l~~l~~~~~~~~~  394 (1047)
T PRK10246        380 EQLRQWQQQLTHAEQ  394 (1047)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            334444444444443

>smart00806 AIP3 Actin interacting protein 3

Probab=81.30  E-value=14  Score=42.15  Aligned_cols=240  Identities=16%  Similarity=0.242  Sum_probs=125.3

Q ss_pred             hhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHH-Hhccc-cCCCCcccchhhhhHHHHh-HH
Q 004913          435 TKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEW-KLKSK-QDGNPHAESMEESTVKDKN-VL  511 (724)
Q Consensus       435 tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~-~lks~-~~~~~~~e~~~~s~~~e~~-~~  511 (724)
                      .-|..|.-+|.-+||--.           +-++.++=-|..+|.|...+-. .+..- -.++++++..+..+..+.+ ++
T Consensus       155 ~el~~lrrdLavlRQ~~~-----------~~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~ll  223 (426)
T smart00806      155 AELKSLQRELAVLRQTHN-----------SFFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLL  223 (426)
T ss_pred             HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHH
Confidence            446677778877777543           3345556667779999887754 24433 5678899999999999999 99


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhh-cccchhHHHHHHHHHhhhhHHHHHHHHHH----HHhH-HHHHHHHHHHHHhhhhHH
Q 004913          512 QELDATKEQLENLSKRYEELEAK-SKADIKVLVKEVKFLRSSQIGLKQELSQM----LNEK-SKTEELLQQERQTHNHMK  585 (724)
Q Consensus       512 qel~~~~~~~e~l~k~~~elEak-skad~KvLvKEVKsLR~s~~~lk~el~~~----~~eK-~e~E~~l~~Er~~~e~~~  585 (724)
                      -..|+.|+.+|.|.+.--.==++ ++.+.+...||+..++.....|+.=++.-    -+.| +||+++.++...-.-+..
T Consensus       224 tkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQed  303 (426)
T smart00806      224 TKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQED  303 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998753221111 22344555566655555554443322211    1111 455555444332211110


Q ss_pred             H--HHHHHHHHHHHHHHHHhhhcccccc---cccCcee-cccCChhhHHHhhcccchhHHHHHHHHhhhhhhhhhh--hh
Q 004913          586 T--VREKLLHECRILLNRFQACNANLYA---EEEDNVI-LESSSAADALALLTSSDDQISLLITEAQLLAEDSKAA--AS  657 (724)
Q Consensus       586 ~--ar~kllhec~iL~~rLqEC~~~~~~---ee~~~~~-~~~ss~~da~dlL~tsDnrI~lLlaEaqll~~d~e~~--~~  657 (724)
                      -  =.++=|..+.--.+=++-|+..-..   .-..+.+ +-.-.++|..       +=..-+|.|++.|-.|+|.-  |-
T Consensus       304 L~~DL~dDL~ka~eTf~lVeq~~~eQ~k~~~~~~~~~~~l~i~~pg~~~-------~~kd~VL~EV~aL~PdHEsRLeAI  376 (426)
T smart00806      304 LIADLKEDLEKAEETFDLVEQCCEEQEKGPSKNRNKPVSLPVPTPGTFN-------DLKDQVLMEVRALKPDHESRLEAI  376 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCccCCCCCCCChh-------HHHHHHHHHHHccCCChHHHHHHH
Confidence            0  0010011111222223333322110   0000111 1101111211       22345788999999999873  22


Q ss_pred             hhhhcccCCCCCccchHHHHHHHHHHHHhhHHHHHH
Q 004913          658 ADVEKAHDNDVCTRTDNELREVIADILVDNAKLRKQ  693 (724)
Q Consensus       658 ~~~~~~~~~~~~~~~d~elrk~lad~~idna~LRkq  693 (724)
                      ..+.+.....=..+.-|++.+=|.+ ||+|-+|+|+
T Consensus       377 ErAEklR~kEle~r~~d~Fq~ELg~-FVe~~kLKks  411 (426)
T smart00806      377 ERAEKLREKELEYRRVDEFEKELGN-FVENGKLKKS  411 (426)
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHH-HhccCCcccC
Confidence            2333333222223344566677766 7777777764

Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=81.04  E-value=1.2e+02  Score=35.31  Aligned_cols=65  Identities=20%  Similarity=0.214  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh---hhcccchhHHHHHHHH--Hh---hh------hHHHHHHHHHHHHhHHHHHHHH
Q 004913          510 VLQELDATKEQLENLSKRYEELE---AKSKADIKVLVKEVKF--LR---SS------QIGLKQELSQMLNEKSKTEELL  574 (724)
Q Consensus       510 ~~qel~~~~~~~e~l~k~~~elE---akskad~KvLvKEVKs--LR---~s------~~~lk~el~~~~~eK~e~E~~l  574 (724)
                      +.+.++..+...+....++.+.-   ++...++.-|....|.  +.   ..      +.+|++|....-.+-..++.-|
T Consensus       219 ~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi  297 (511)
T PF09787_consen  219 LQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQI  297 (511)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555554   3333444444444443  22   01      4567777776666666666555

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=80.72  E-value=17  Score=34.87  Aligned_cols=34  Identities=26%  Similarity=0.347  Sum_probs=16.4

Q ss_pred             HHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHh
Q 004913          417 EDLITRLNQEMTVKDYLMTKVKDLEVELETTKQK  450 (724)
Q Consensus       417 EDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~  450 (724)
                      |+|..++..-.+=-+.|...+..|+..++...++
T Consensus        55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere   88 (151)
T PF11559_consen   55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELERE   88 (151)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3343333333444455555555555555554443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=80.55  E-value=68  Score=39.93  Aligned_cols=91  Identities=18%  Similarity=0.267  Sum_probs=46.5

Q ss_pred             HHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHH----------HHHHHHHhccccCCCCcccchhh
Q 004913          433 LMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQK----------SLEMEWKLKSKQDGNPHAESMEE  502 (724)
Q Consensus       433 L~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k----------~~e~E~~lks~~~~~~~~e~~~~  502 (724)
                      +.-.|.+||.+++.-+.-..+++.+.     |   |++-....+++.          ..|+|.+....++--.-......
T Consensus       363 ~~~ql~~le~~~~e~q~~~qe~~~e~-----e---qLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t  434 (980)
T KOG0980|consen  363 YENQLLALEGELQEQQREAQENREEQ-----E---QLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYT  434 (980)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHH-----H---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            45568888888887766655555432     2   222222222222          23333322221111111112234


Q ss_pred             hhHHHHh-HHHHHHHHHHHHHHHHHHHHHH
Q 004913          503 STVKDKN-VLQELDATKEQLENLSKRYEEL  531 (724)
Q Consensus       503 s~~~e~~-~~qel~~~~~~~e~l~k~~~el  531 (724)
                      ...+++. +++..+++.+|+|.-++-.+++
T Consensus       435 ~l~~~h~~lL~K~~di~kQle~~~~s~~~~  464 (980)
T KOG0980|consen  435 ELRQEHADLLRKYDDIQKQLESAEQSIDDV  464 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            5566666 8888888888888777666633

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=80.48  E-value=31  Score=34.06  Aligned_cols=90  Identities=24%  Similarity=0.335  Sum_probs=57.0

Q ss_pred             hhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHH
Q 004913          427 MTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVK  506 (724)
Q Consensus       427 ~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~  506 (724)
                      ..=++.|--+|--||.+|+.+..+.-..--+|=-. +.-+.-|+=.++.+......++..|.+              ++.
T Consensus        16 ~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~-k~eie~L~~el~~lt~el~~L~~EL~~--------------l~s   80 (140)
T PF10473_consen   16 ESEKDSLEDHVESLERELEMSQENKECLILDAENS-KAEIETLEEELEELTSELNQLELELDT--------------LRS   80 (140)
T ss_pred             HHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHH
Confidence            34467788899999999998754433333333333 556666676777777777666665544              456


Q ss_pred             HHh-HHHHHHHHHHHHHHHHHHHHHH
Q 004913          507 DKN-VLQELDATKEQLENLSKRYEEL  531 (724)
Q Consensus       507 e~~-~~qel~~~~~~~e~l~k~~~el  531 (724)
                      |++ +.+++...++++..|......+
T Consensus        81 Ek~~L~k~lq~~q~kv~eLE~~~~~~  106 (140)
T PF10473_consen   81 EKENLDKELQKKQEKVSELESLNSSL  106 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            666 6666666666666665544443

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=80.43  E-value=1.5e+02  Score=36.27  Aligned_cols=56  Identities=25%  Similarity=0.367  Sum_probs=32.2

Q ss_pred             hhhhhhHHHHHHHHHhhHHHHHHHHHH----hh---------HhhhhhhhcHHHHHHHHHHHHHHhccc
Q 004913          435 TKVKDLEVELETTKQKSKETLQQAILS----ER---------ERLTQMQWDMEELRQKSLEMEWKLKSK  490 (724)
Q Consensus       435 tKvkDlE~eLe~t~~~~ke~lqQa~l~----Er---------Er~t~mqwdmeelr~k~~e~E~~lks~  490 (724)
                      .+|.|||+.|-++..+.+....|.---    |+         ..++-++-+-..+.+..+.|-..+|-.
T Consensus       450 kev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~  518 (786)
T PF05483_consen  450 KEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQ  518 (786)
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            356677777766666665555543221    11         234445556666677777777766644

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=80.28  E-value=1.1e+02  Score=37.73  Aligned_cols=183  Identities=22%  Similarity=0.264  Sum_probs=85.2

Q ss_pred             HhhhhcchHHHHHHhhhhhhHHH-------HHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHH
Q 004913          409 LVTAKTDMEDLITRLNQEMTVKD-------YLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSL  481 (724)
Q Consensus       409 l~~aktdmEDLiaRLnqe~avk~-------fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~  481 (724)
                      +..|-.-..||+.+|.+++-|=.       -|-.++.++.+.|+-....+. .||. |++++.-|...-+-++..   ..
T Consensus       504 L~~avskIsEfv~~LekeVh~C~DLLsgkadLE~fieE~s~tLdwIls~~~-SLqD-v~s~~sEIK~~f~~~ss~---e~  578 (769)
T PF05911_consen  504 LNVAVSKISEFVLVLEKEVHVCQDLLSGKADLERFIEEFSLTLDWILSNCF-SLQD-VSSMRSEIKKNFDGDSSS---EA  578 (769)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHccc-hHHH-HHHHHHHHHHhhhhcccc---cc
Confidence            33333334888888888875522       344456666666666655543 3333 667776666542222111   11


Q ss_pred             HHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhccc---chhHHHHHHHHHh-------
Q 004913          482 EMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKA---DIKVLVKEVKFLR-------  550 (724)
Q Consensus       482 e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakska---d~KvLvKEVKsLR-------  550 (724)
                      +.....+.........+...+.+..++. +.-+|....+++|.++-++.|.|.+...   +.. +++|-+++-       
T Consensus       579 E~~~~dea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~-~~keS~s~~E~ql~~~  657 (769)
T PF05911_consen  579 EINSEDEADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELE-SAKESNSLAETQLKAM  657 (769)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            1111112222222222333344444444 4444555555555555555555554221   111 222222222       


Q ss_pred             --------hhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhh
Q 004913          551 --------SSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQA  604 (724)
Q Consensus       551 --------~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqE  604 (724)
                              .....++.|+.+....-..||.=|.+||+-       =..++-.|.-|...|+-
T Consensus       658 ~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~-------~~e~~~kc~~Le~el~r  712 (769)
T PF05911_consen  658 KESYESLETRLKDLEAEAEELQSKISSLEEELEKERAL-------SEELEAKCRELEEELER  712 (769)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-------chhhhhHHHHHHHHHHh
Confidence                    222233344444444444455555555533       33445567777666653

The function of this family is unknown.

>TIGR02977 phageshock_pspA phage shock protein A

Probab=80.08  E-value=73  Score=32.80  Aligned_cols=165  Identities=19%  Similarity=0.248  Sum_probs=87.5

Q ss_pred             hHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhh-------
Q 004913          397 KLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQM-------  469 (724)
Q Consensus       397 kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~m-------  469 (724)
                      -|+..+--|+.-|..++...-+++|.--+...=-+=+..++.++|.--..-.++..|.|-..++.++..+...       
T Consensus        28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~  107 (219)
T TIGR02977        28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERE  107 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566667777777778777777777544444444445566677777777777888888888777766544332       


Q ss_pred             ----hhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHhHHH-----HHHHHHHHHHHHHHHHHHHhhhcccch-
Q 004913          470 ----QWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQ-----ELDATKEQLENLSKRYEELEAKSKADI-  539 (724)
Q Consensus       470 ----qwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~q-----el~~~~~~~e~l~k~~~elEakskad~-  539 (724)
                          +=-.++|..++.+|+.++..-..-+...-...+.+.....+-+     ....+-..|+-+..+..++||.+.+.- 
T Consensus       108 ~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~~ea~aea~~~  187 (219)
T TIGR02977       108 LAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDELEAQAESYDL  187 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence                2334455555555555555442221111010111111111100     123444566666677777777766642 


Q ss_pred             ---hHHHHHHHHHhhhhHHHHHHHHH
Q 004913          540 ---KVLVKEVKFLRSSQIGLKQELSQ  562 (724)
Q Consensus       540 ---KvLvKEVKsLR~s~~~lk~el~~  562 (724)
                         .-|-+|+..|-. ......||..
T Consensus       188 ~~~~~l~~~l~~l~~-~~~vd~eLa~  212 (219)
T TIGR02977       188 GRKPSLEDEFAELEA-DDEIERELAA  212 (219)
T ss_pred             cCCCCHHHHHHHhcC-CChHHHHHHH
Confidence               125555555532 2334444433

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	724
2v14_A	134	Kinesin-like motor protein C20ORF23; plus-END kine	8e-20
3lui_A	115	Sorting nexin-17, SNX17; PX domain, endosome, phos	1e-18
2ett_A	128	Sorting nexin-22; PX domain, BC019655, SNX22_human	3e-18
1kmd_A	117	VAM7P, vacuolar morphogenesis protein VAM7; PX dom	2e-16
1xte_A	154	Serine/threonine-protein kinase SGK3; CISK, PX dom	3e-15
3p0c_A	130	Nischarin; structural genomics, structural genomic	6e-15
3iq2_A	138	Sorting nexin-7; SNX7, PHOX, protein signalling, S	7e-13
2iwl_X	140	Phosphatidylinositol-4-phosphate 3-kinase C2 domai	1e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
2ar5_A	121	Phosphoinositide 3-kinase; PX domain, transferase;	4e-12
4akv_A	386	Sorting nexin-33; transport protein, organelle bio	6e-11
2i4k_A	128	Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 al	7e-11
2csk_A	146	Sorting nexin 12; SNX12, PX domain, structural gen	1e-10
3dyt_A	366	Sorting nexin-9; 3-helix bundle, BAR domain, PX do	4e-10
1ocs_A	162	Sorting nexin GRD19; sorting protein, PX-domain, y	8e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	9e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-04
1kq6_A	141	NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha	5e-09
1h6h_A	143	Neutrophil cytosol factor 4; PX domain; HET: PIB;	6e-09
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	1e-08
2l73_A	149	NADPH oxidase organizer 1; cell membrane, PX domai	2e-08
2wwe_A	127	Phosphoinositide-3-kinase, class 2, gamma polypept	3e-08
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	3e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-05
2v6v_A	156	BUD emergence protein 1; homotypic fusion, regulat	1e-05
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	5e-05
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	8e-04

>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens} Length = 134

 Score = 85.3 bits (211), Expect = 8e-20
 Identities = 23/122 (18%), Positives = 50/122 (40%), Gaps = 7/122 (5%)

Query: 50  VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKK 109
           ++IP +V+    +  D    + V++ +           V RR++ F ++   LK  + + 
Sbjct: 8   ISIPRYVL--CGQGKDAHFEFEVKITVLDETWT-----VFRRYSRFREMHKTLKLKYAEL 60

Query: 110 NIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAARSSFQ 169
                PPK L   K   ++ ERR  LE+++    S +  S +  +         ++ +  
Sbjct: 61  AALEFPPKKLFGNKDERVIAERRSHLEKYLRDFFSVMLQSATSPLHINKVGLTLSKHTIC 120

Query: 170 DV 171
           + 
Sbjct: 121 EF 122

>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A Length = 115

 Score = 81.3 bits (201), Expect = 1e-18
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 9/112 (8%)

Query: 50  VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKK 109
            +IP              V Y + V                R++  L L   L+K +   
Sbjct: 6   FSIPETESRSGDSGGSAYVAYNIHV--------NGVLHCRVRYSQLLGLHEQLRKEYGAN 57

Query: 110 NIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161
            +P  PPK L  + + A +E+RR  LE++M  +  D  L  S +  SFL   
Sbjct: 58  VLPAFPPKKLFSL-TPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRA 108

>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607, structural genomics,protein structure initiative PSI; NMR {Homo sapiens} Length = 128

 Score = 80.3 bits (198), Expect = 3e-18
 Identities = 31/125 (24%), Positives = 47/125 (37%), Gaps = 13/125 (10%)

Query: 40  HDPRTGWSYCVTIPS---WVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFL 96
           H         V IPS       P+       + +RV+V             V RR++ F 
Sbjct: 2   HHHHHHLELEVHIPSVGPEAEGPRQSPEKSHMVFRVEVLCSGRRHT-----VPRRYSEFH 56

Query: 97  KLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVAS 156
            L   +KK +    +P  P K L   ++R  LE+RR  LE ++  +L          +  
Sbjct: 57  ALHKRIKKLYK---VPDFPSKRLPNWRTR-GLEQRRQGLEAYIQGILYLNQEVPKE-LLE 111

Query: 157 FLELE 161
           FL L 
Sbjct: 112 FLRLR 116

>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1 Length = 117

 Score = 74.9 bits (184), Expect = 2e-16
 Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 19/116 (16%)

Query: 56  VVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAP 115
           + +   + +   V Y V             + + +R++ F KL T L++          P
Sbjct: 8   IKVDDVKINPKYVLYGVST---------PNKRLYKRYSEFWKLKTRLERDVGSTIPYDFP 58

Query: 116 PKGLLRMK-------SRALLEERRCSLEEWMTKLLSDIDLSR---SVSVASFLELE 161
            K  +  +          +++ERR  LE ++ +L +D   SR   +     FL+L 
Sbjct: 59  EKPGVLDRRWQRRYDDPEMIDERRIGLERFLNELYNDRFDSRWRDTKIAQDFLQLS 114

>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A Length = 154

 Score = 72.7 bits (178), Expect = 3e-15
 Identities = 29/138 (21%), Positives = 56/138 (40%), Gaps = 7/138 (5%)

Query: 50  VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKK 109
           V+IPS               Y+V V +   E       V RR+  F KL+  LKK FP  
Sbjct: 10  VSIPS--SDEHREKKKRFTVYKVLVSVGRSEWF-----VFRRYAEFDKLYNSLKKQFPAM 62

Query: 110 NIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAARSSFQ 169
            +     +          +++RR  L E++  L+   +L     V +FL++++    S  
Sbjct: 63  ALKIPAKRIFGDNFDPDFIKQRRAGLNEFIQNLVRYPELYNHPDVRAFLQMDSPRHQSDP 122

Query: 170 DVNQNASEANPSSNSTIS 187
             +++    +   +++ +
Sbjct: 123 SEDEDERSTSKPHSTSRN 140

>3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens} Length = 130

 Score = 71.0 bits (174), Expect = 6e-15
 Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 6/106 (5%)

Query: 56  VVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAP 115
             +  S   D    Y +QV   S E       V  R+++F  L   L       +    P
Sbjct: 25  ARVVGSELVDTYTVYIIQVTDGSHEWT-----VKHRYSDFHDLHEKLVAERKI-DKNLLP 78

Query: 116 PKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161
           PK ++   SR+L+E+R   LE ++ KLL+         +A FL   
Sbjct: 79  PKKIIGKNSRSLVEKREKDLEVYLQKLLAAFPGVTPRVLAHFLHFH 124

>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens} Length = 138

 Score = 65.6 bits (160), Expect = 7e-13
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 4/97 (4%)

Query: 70  YRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMK----SR 125
           YR+       E  ++   V RR+ +FL L   L++A P   IPP P K +++      + 
Sbjct: 29  YRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVERFND 88

Query: 126 ALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEA 162
             +E RR +L +++ ++     L+ +     FL  +A
Sbjct: 89  DFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTAQA 125

>2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide; PI3K, PX domain, transferase; 2.6A {Homo sapiens} Length = 140

 Score = 64.6 bits (157), Expect = 1e-12
 Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 8/112 (7%)

Query: 50  VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKK 109
           V++ ++    K  + D    Y V++     EG      V R F+ F +L   L   FP  
Sbjct: 23  VSVFTYH---KKYNPDKHYIYVVRI---LREGQIEPSFVFRTFDEFQELHNKLSIIFPLW 76

Query: 110 NIPPAPPKGLL-RMKSRALLEERRCSLEEWMTKLLS-DIDLSRSVSVASFLE 159
            +P  P + +L R   + +  +R+  L  ++  L++   D++    V +F  
Sbjct: 77  KLPGFPNRMVLGRTHIKDVAAKRKIELNSYLQSLMNASTDVAECDLVCTFFH 128

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.1 bits (168), Expect = 4e-12
 Identities = 81/592 (13%), Positives = 181/592 (30%), Gaps = 169/592 (28%)

Query: 235 VEDLT--------LDEDLTSP---------IENLVKYGMSNIDEGLFMGQTILEQLEGFP 277
           V+D+         +D  + S             L+      + +  F+   +L     F 
Sbjct: 38  VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK--FVE-EVLRINYKFL 94

Query: 278 RHKAHAQ-QHPNNATGKNVNNGNVSKALFLSGNGMDLFSEPEPGKVIGHARKLSADSVRS 336
                 + + P+  T   +   +    L+   N   +F+      V   +R      +R 
Sbjct: 95  MSPIKTEQRQPSMMTRMYIEQRDR---LY---NDNQVFA---KYNV---SRLQPYLKLRQ 142

Query: 337 DASSIRGSEISNFGIPNSSADGSPGLHRC------AEVSSSREILGNSD-----LQFS-- 383
               +R +        N   DG  G           +V  S ++    D     L     
Sbjct: 143 ALLELRPA-------KNVLIDGVLG---SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192

Query: 384 GDAELVIPLDQR--HKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDY-----LMTK 436
              E V+ + Q+  +++     +        K  +  +   L + +  K Y     ++  
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 437 VKDLEV---------ELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKL 487
           V++ +           L TT+ K       A  +    L      +     KSL +++  
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 488 KSKQD-------GNPHAESMEESTVKD--------KNVLQE-----LDATKEQLE--NLS 525
              QD        NP   S+   +++D        K+V  +     ++++   LE     
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372

Query: 526 KRYEELEAKSKADIKVLVKEVKFLRSSQI-------GLKQELSQMLNE---KSKTEELLQ 575
           K ++ L         V          + +        +K ++  ++N+    S    L++
Sbjct: 373 KMFDRLS--------VFPPSAHI--PTILLSLIWFDVIKSDVMVVVNKLHKYS----LVE 418

Query: 576 QERQT-----HN-----HMKTVREKLLHECRILLNRFQA----CNANLYAEEEDNVI--- 618
           ++ +       +      +K   E  LH  R +++ +       + +L     D      
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALH--RSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476

Query: 619 ----LESSSAADALALLTSSDDQISL----LITEAQLLAEDSKAAASADVE--------- 661
               L++    + + L       + L    L  E ++  + +   AS  +          
Sbjct: 477 IGHHLKNIEHPERMTLFR----MVFLDFRFL--EQKIRHDSTAWNASGSILNTLQQLKFY 530

Query: 662 KAHDNDVCTRTDNELREVIADIL-----VDNAKLRKQVNSVLRRALLFRNNE 708
           K +        D +   ++  IL     ++   +  +   +LR AL+  +  
Sbjct: 531 KPY----ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.1 bits (155), Expect = 1e-10
 Identities = 56/370 (15%), Positives = 127/370 (34%), Gaps = 96/370 (25%)

Query: 417 EDLITRLNQEMTVKDYLMTKVKDLEVELETTKQ-----KSKETLQQA------ILSERER 465
           +D++  + ++  V ++    V+D+   + + ++      SK+ +         +LS++E 
Sbjct: 19  KDIL-SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77

Query: 466 LTQM----------QWDME----ELRQKSLEME---WKLKSKQDGNPHAESMEESTVKDK 508
           + Q           ++ M     E RQ S+       +     + N              
Sbjct: 78  MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ--------VFAKY 129

Query: 509 NV--LQELDATKEQLENLSK-RYEELE-----AKSKADIKVLVKEVKFLRSSQIGLKQE- 559
           NV  LQ     ++ L  L   +   ++      K+      +  +V    S ++  K + 
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT-----WVALDV--CLSYKVQCKMDF 182

Query: 560 ----LSQMLNEKSKTEELL-QQERQTHNHMKTVREKLLHECRILLNRFQACNANLYAEEE 614
               L+  L   +  E +L   ++  +        +  H   I L      ++    + E
Sbjct: 183 KIFWLN--LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR----IHS---IQAE 233

Query: 615 DNVILESSSAADALALLTSSDD--------------QISLLITEAQLLAEDSKAAASADV 660
              +L+S    + L +L    +              +I LL T  + + +   AA +  +
Sbjct: 234 LRRLLKSKPYENCLLVL---LNVQNAKAWNAFNLSCKI-LLTTRFKQVTDFLSAATTTHI 289

Query: 661 EKAHDNDVCTRTDNELREVIADIL-VDNAKLRKQVNSVLRRAL-----LFRNNESPPPSS 714
              H +   T T +E++ ++   L      L ++V +   R L       R+      + 
Sbjct: 290 SLDHHSM--TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG---LATW 344

Query: 715 DNLLDDSSER 724
           DN    + ++
Sbjct: 345 DNWKHVNCDK 354

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 1e-08
 Identities = 93/571 (16%), Positives = 173/571 (30%), Gaps = 154/571 (26%)

Query: 71  RVQVGLQSPEGITTTRGVLRRFNNFL-KLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLE 129
            ++   + P  +T      R +     +L+ D +  F K N+    P   LR   +ALLE
Sbjct: 97  PIKTEQRQPSMMT------RMYIEQRDRLYNDNQV-FAKYNVSRLQPYLKLR---QALLE 146

Query: 130 ERRCSLEEWMT--------KLLSDIDLSRSVSVASFLELEAAARSSFQDVNQNA----SE 177
            R     + +         K              +++ L+       Q          + 
Sbjct: 147 LRP---AKNVLIDGVLGSGK--------------TWVALDVCLSYKVQCKMDFKIFWLNL 189

Query: 178 ANPSSNSTISSLQMPSDSGFTLIGSSSVTSDYGSDTAYETSELGTPKLGRDNGSEIGVED 237
            N   NS  + L+M     + +  + +  SD+ S+       +   +L R   S+     
Sbjct: 190 KN--CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI-QAELRRLLKSKPYENC 246

Query: 238 L-TLDE----------DLTSPIENLVKYGMSNIDEGLFMGQTILEQLEGFPRHKAHAQQH 286
           L  L            +L+  I  L+      + + L    T    L+         +  
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKI--LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE-- 302

Query: 287 PNNATGKNVNNGNVSKALFLSGNGMDLFSEPEPGKVIGHARKLS--ADSVRSDASSIRGS 344
                          K+L L          P       + R+LS  A+S+R   ++    
Sbjct: 303 --------------VKSLLLKYLDCRPQDLPREVLTT-NPRRLSIIAESIRDGLATW--- 344

Query: 345 EISNFGIPNSSADGSPGLHRCAEVSSSREILGNSDLQ--------FSGDAELVIPLDQRH 396
              N+   N        L     + SS  +L  ++ +        F   A   IP     
Sbjct: 345 --DNWKHVNCDK-----LTTI--IESSLNVLEPAEYRKMFDRLSVFPPSAH--IPTI--- 390

Query: 397 KLSRVLLTMERRLVTAKTDMEDLITRL-NQEMTVKDYLMTKVKDLEVELETTKQKSKE-T 454
            LS +   + +       D+  ++ +L    +  K    + +    + LE   +   E  
Sbjct: 391 LLSLIWFDVIKS------DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444

Query: 455 LQQAILS--------ERERLTQMQWD-------------------MEELRQKSLEMEW-- 485
           L ++I+         + + L     D                   M   R   L+  +  
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504

Query: 486 -KLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVK 544
            K++       H  +   ++    N LQ+L   K  + +   +YE L     A +  L K
Sbjct: 505 QKIR-------HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV---NAILDFLPK 554

Query: 545 -EVKFLRSS-----QIGLKQELSQMLNEKSK 569
            E   + S      +I L  E   +  E  K
Sbjct: 555 IEENLICSKYTDLLRIALMAEDEAIFEEAHK 585

>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo sapiens} PDB: 2rea_A 2red_A Length = 121

 Score = 63.0 bits (153), Expect = 4e-12
 Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 11/116 (9%)

Query: 60  KSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGL 119
           K  + D    Y V++     EG      V R F+ F +L   L   FP   +P  P + +
Sbjct: 15  KKYNPDKHYIYVVRI---LREGQIEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMV 71

Query: 120 L-RMKSRALLEERRCSLEEWMTKLLS-DIDLSRSVSVASFLELEAAARSSFQDVNQ 173
           L R   + +  +R+  L  ++  L++   D++    V +F         S    + 
Sbjct: 72  LGRTHIKDVAAKRKIELNSYLQSLMNASTDVAECDLVCTFFH------GSHHHHHH 121

>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens} Length = 386

 Score = 64.0 bits (155), Expect = 6e-11
 Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 5/117 (4%)

Query: 82  ITTTRG---VLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEW 138
           +T T     V RR+ +F  L+  L   F   ++P  P K          +E+R+  L  W
Sbjct: 66  LTPTHAASPVYRRYKHFDWLYNRLLHKFTVISVPHLPEKQATGRFEEDFIEKRKRRLILW 125

Query: 139 MTKLLSDIDLSRSVSVASFLELEAAARSSFQDVNQNASEANPSSNSTISSLQMPSDS 195
           M  + S   LS+      F  L       ++   + A +      S + + Q+P++ 
Sbjct: 126 MDHMTSHPVLSQYEGFQHF--LSCLDDKQWKMGKRRAEKDEMVGASFLLTFQIPTEH 180

>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens} Length = 128

 Score = 59.5 bits (144), Expect = 7e-11
 Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 12/104 (11%)

Query: 70  YRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKN--IPPAPPKGLLRMK---- 123
           Y+V      P   +    V RRF++FL L+  L +   +    +PP P K L+ M     
Sbjct: 24  YKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKV 83

Query: 124 ------SRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161
                 S   LE+RR +LE ++ ++++   + +   V  FLE E
Sbjct: 84  GKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKE 127

>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 146

 Score = 59.1 bits (143), Expect = 1e-10
 Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 10/107 (9%)

Query: 70  YRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMK------ 123
           Y V++    P        V RR+++F  L  +L++   K  +PP P K L R        
Sbjct: 31  YEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELER-DSKIVVPPLPGKALKRQLPFRGDE 89

Query: 124 ---SRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAARSS 167
                + +EERR  LE+++ K+           +  FL+ EA  R+ 
Sbjct: 90  GIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQEEAIDRNY 136

>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A* Length = 366

 Score = 61.3 bits (148), Expect = 4e-10
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 1/78 (1%)

Query: 83  TTTRGVLRRFNNFLKLFTDLKKAFPKK-NIPPAPPKGLLRMKSRALLEERRCSLEEWMTK 141
            T R V  R+ +F  L+  L   F     IP  P K +        ++ R   L+ WMT+
Sbjct: 49  NTNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVTGRFEEEFIKMRMERLQAWMTR 108

Query: 142 LLSDIDLSRSVSVASFLE 159
           +     +S S     FL 
Sbjct: 109 MCRHPVISESEVFQQFLN 126

>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A* Length = 162

 Score = 57.3 bits (138), Expect = 8e-10
 Identities = 32/146 (21%), Positives = 49/146 (33%), Gaps = 18/146 (12%)

Query: 23  DWSPAPRKWNGRDTVWPHDPRTGWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGI 82
            +S    +      +  H+P+T            +            Y +      P   
Sbjct: 24  SYSEIYAEPENFLEIEVHNPKT-----------HIPNGMDSKGMFTDYEIICRTNLPSFH 72

Query: 83  TTTRGVLRRFNNFLKLFTDLKKAF-----PKKNIPPAPPKGLLRMK-SRALLEERRCSLE 136
                V RR+++F      L K       PK  +P  P K LL  + S  ++EERR  L 
Sbjct: 73  KRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLSNRFSNEVIEERRQGLN 132

Query: 137 EWMTKLLSDIDLSR-SVSVASFLELE 161
            WM  +     L   S  +  F+E E
Sbjct: 133 TWMQSVAGHPLLQSGSKVLVRFIEAE 158

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 59.8 bits (145), Expect = 3e-09
 Identities = 42/255 (16%), Positives = 101/255 (39%), Gaps = 26/255 (10%)

Query: 392  LDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKS 451
             ++++ L   L         A+     L  +  +   +   +  ++++ E   +  + + 
Sbjct: 891  CEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEK 950

Query: 452  KETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVL 511
            K+ +QQ +L   E+L + +   ++L+ + +  + K+K  +D     E       K++ +L
Sbjct: 951  KK-MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLL 1009

Query: 512  QE--------LDATKEQLENLSKRYEELEA-------------KSKADI----KVLVKEV 546
            +E        L   +E+ +NL+K   + E+             KS+ ++    + L  E 
Sbjct: 1010 EERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGES 1069

Query: 547  KFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACN 606
              L      L+ +++++  + +K EE LQ          + +   L + R L +      
Sbjct: 1070 SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQ 1129

Query: 607  ANLYAEEEDNVILES 621
             +L +E+      E 
Sbjct: 1130 EDLESEKAARNKAEK 1144

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 56.0 bits (135), Expect = 4e-08
 Identities = 41/191 (21%), Positives = 84/191 (43%), Gaps = 12/191 (6%)

Query: 393  DQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSK 452
            DQ +KL++    +E R+    T++ +   +      +K+   + + +LEV L+  + KS+
Sbjct: 997  DQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEE-KSR 1055

Query: 453  ETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQ 512
            + L++         + +   + EL+ +  E++ +L  K++    A +  E     KN   
Sbjct: 1056 QELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNAL 1115

Query: 513  ----ELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKS 568
                EL++    L+      E+LE+  KA      K+ + L      LK EL   L+  +
Sbjct: 1116 KKIRELESHISDLQ------EDLES-EKAARNKAEKQKRDLSEELEALKTELEDTLDTTA 1168

Query: 569  KTEELLQQERQ 579
              +EL   + +
Sbjct: 1169 TQQELRGSDYK 1179

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 51.4 bits (123), Expect = 9e-07
 Identities = 44/279 (15%), Positives = 100/279 (35%), Gaps = 15/279 (5%)

Query: 422  RLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSL 481
             +     +   L    ++ E++ +  + +  +  QQ   +E + L Q    + E +    
Sbjct: 839  WMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNL-- 896

Query: 482  EMEWKLKSKQDGNPHAESMEESTVKDKNVLQE-LDATKEQLENLSKRYEELEAKSKADIK 540
             ++ KL+++ +    AE M       K  L+E L   + ++E   +R ++L+A+ K    
Sbjct: 897  -LQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKK--- 952

Query: 541  VLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLN 600
             + +++  L       +    ++  EK   +  +++       M+    KL  E ++L  
Sbjct: 953  -MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEE 1011

Query: 601  RFQACNANLYAEEEDNVILESSSAADALALLTSSDDQISLLITEAQLLAEDSKAAASADV 660
            R      NL  EEE    L            +   +    L  E +   E  K     + 
Sbjct: 1012 RVSDLTTNLAEEEEKAKNLTKLKN----KHESMISELEVRLKKEEKSRQELEKIKRKLEG 1067

Query: 661  EKAHDNDVCTRTDNE---LREVIADILVDNAKLRKQVNS 696
            E +  ++       +   L+  +A    +      ++  
Sbjct: 1068 ESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLED 1106

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 22/138 (15%), Positives = 53/138 (38%), Gaps = 14/138 (10%)

Query: 405  MERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERE 464
            +E+     + +  DL  ++ +       L  ++   E EL+    + ++        E  
Sbjct: 1058 LEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLED--------ETS 1109

Query: 465  RLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENL 524
            +       + EL     +++  L+S++     AE       + +++ +EL+A K +LE+ 
Sbjct: 1110 QKNNALKKIRELESHISDLQEDLESEKAARNKAEK------QKRDLSEELEALKTELEDT 1163

Query: 525  SKRYEELEAKSKADIKVL 542
                   +    +D K  
Sbjct: 1164 LDTTATQQELRGSDYKDD 1181

>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A Length = 141

 Score = 54.3 bits (130), Expect = 5e-09
 Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 12/109 (11%)

Query: 60  KSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPK-- 117
           K         Y   V  Q      + + V RRF    +    LK+ FP +     P    
Sbjct: 16  KRFVPSQHYVYMFLVKWQD----LSEKVVYRRFTEIYEFHKTLKEMFPIEAGAINPENRI 71

Query: 118 -----GLLRMKSRALLEERRCSLEEWMTKLLS-DIDLSRSVSVASFLEL 160
                       +   E R+ +L E+ + L+S    +SR   +  F ++
Sbjct: 72  IPHLPAPKWFDGQRAAENRQGTLTEYCSTLMSLPTKISRCPHLLDFFKV 120

>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1 Length = 143

 Score = 54.2 bits (130), Expect = 6e-09
 Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 17/119 (14%)

Query: 50  VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFP-- 107
             I       + R       + ++V  +          + RR+  F  L + L++ F   
Sbjct: 23  ANIADI---EEKRGFTSHFVFVIEVKTKGGSKYL----IYRRYRQFHALQSKLEERFGPD 75

Query: 108 ------KKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLS-DIDLSRSVSVASFLE 159
                    +P  P K  + +  + + E R  +L  +M  LLS  + +     V  F  
Sbjct: 76  SKSSALACTLPTLPAKVYVGV-KQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFY 133

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 18/182 (9%), Positives = 61/182 (33%), Gaps = 14/182 (7%)

Query: 421  TRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKS 480
             +    +  ++  +        E+++T         +    E     +++   ++     
Sbjct: 833  LQTKLRLIKREPFVAPAGLTPNEIDSTWSA-----LEKAEQEHAEALRIELKRQKKIAVL 887

Query: 481  LEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIK 540
            L+   ++  K +     +S+   + +  + +  + A  + LE      + LE +S +D+ 
Sbjct: 888  LQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLL 947

Query: 541  VLVKEVKFLRSSQ-IGLKQELSQMLNEKSKTEEL--------LQQERQTHNHMKTVREKL 591
             ++ ++  L  +    L +       ++    +         L  E +    ++ +    
Sbjct: 948  SILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHH 1007

Query: 592  LH 593
             H
Sbjct: 1008 HH 1009

>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase regulator; NMR {Homo sapiens} Length = 149

 Score = 52.8 bits (126), Expect = 2e-08
 Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 15/119 (12%)

Query: 53  PSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFP----- 107
           P  V          +  +   V         +   V R ++ F +L   LK+ FP     
Sbjct: 12  PVSVQGAALVQIKRLQTFAFSVRWSD----GSDTFVRRSWDEFRQLKKTLKETFPVEAGL 67

Query: 108 ----KKNIPPAPPKGLL-RMKSRALLEERRCSLEEWMTKLLS-DIDLSRSVSVASFLEL 160
                + +P      LL R+   +    R   LE +  +LL+    ++RS ++  F   
Sbjct: 68  LRRSDRVLPKLLDAPLLGRVGRTSRGLARLQLLETYSRRLLATAERVARSPTITGFFAP 126

>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide; phosphoprotein, nucleotide-binding, PIK3C2G, membrane, PX-domain, transferase, ATP-binding; 1.25A {Homo sapiens} Length = 127

 Score = 52.2 bits (125), Expect = 3e-08
 Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 9/111 (8%)

Query: 49  CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK 108
            ++I    +L  S+ S  +  Y +QV   + E         + F  F KL + L+K F  
Sbjct: 22  SMSIERATILGFSKKSSNL--YLIQVTHSNNETSL----TEKSFEQFSKLHSQLQKQFAS 75

Query: 109 KNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLS-DIDLSRSVSVASFL 158
             +P  P    L   +      R   L  +M ++L+   +++ S  V SF 
Sbjct: 76  LTLPEFPHWWHLPFTNSD--HRRFRDLNHYMEQILNVSHEVTNSDCVLSFF 124

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863

 Score = 56.5 bits (135), Expect = 3e-08
 Identities = 36/242 (14%), Positives = 93/242 (38%), Gaps = 9/242 (3%)

Query: 378 SDLQFSGDAELVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTV-----KDY 432
            D       E +  L   H+  +  L    +   A   + + ++++ Q   V       Y
Sbjct: 509 QDTFIVHTIEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPY 568

Query: 433 LMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQD 492
                +++  + E  +Q       QA++ E  R  Q +   ++   ++  +   +++K +
Sbjct: 569 TTITPQEINGKWEHVRQLVPR-RDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKME 627

Query: 493 GNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSS 552
                      T++D+  L  L   ++ + N   + ++LE   +   + L+ + K    +
Sbjct: 628 EIGRISIEMHGTLEDQ--LNHLRQYEKSIVNYKPKIDQLEGDHQQIQEALIFDNKHTNYT 685

Query: 553 QIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANLYAE 612
              ++    Q+L   ++T   ++ +  T +  K + ++ ++E R   N F      +   
Sbjct: 686 MEHIRVGWEQLLTTIARTINEVENQILTRD-AKGISQEQMNEFRASFNHFDRKKTGMMDC 744

Query: 613 EE 614
           E+
Sbjct: 745 ED 746

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 54.0 bits (130), Expect = 2e-07
 Identities = 32/211 (15%), Positives = 78/211 (36%), Gaps = 16/211 (7%)

Query: 395  RHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKET 454
            R  L R    M  R   +      +I +  +    + +    +K +       ++   + 
Sbjct: 850  RGYLVRNKYQMMLREHKSI-----IIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKR 904

Query: 455  LQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAE----SMEESTVKDKNV 510
              + +  E   + + +     L  K ++++ K+  +            ++E +   +   
Sbjct: 905  ELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEK 964

Query: 511  LQ----ELDATKEQLENLSKRYEELE---AKSKADIKVLVKEVKFLRSSQIGLKQELSQM 563
            L+     L  ++E+ +N + R   L+   AK + ++     E K +       K E  Q+
Sbjct: 965  LRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQL 1024

Query: 564  LNEKSKTEELLQQERQTHNHMKTVREKLLHE 594
            ++E  +   LL+ E++  N     + K + E
Sbjct: 1025 VSELKEQNTLLKTEKEELNRRIHDQAKEITE 1055

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 26/171 (15%), Positives = 66/171 (38%), Gaps = 14/171 (8%)

Query: 412  AKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQW 471
                +E+ I +L +++  ++     + +    LE T     E L+  +    ERL   + 
Sbjct: 922  LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDV----ERLRMSEE 977

Query: 472  DMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEEL 531
            + +    + L ++ ++   +      + + ++  + K + +  D  K + E L    +E 
Sbjct: 978  EAKNATNRVLSLQEEIAKLR------KELHQTQTEKKTIEEWADKYKHETEQLVSELKEQ 1031

Query: 532  EAKSKADIKVLVKEVKFLRSSQIGLKQELSQML-NEKSKTEELLQQERQTH 581
                K + + L +    +      + + + + L  E  + E  L  ER  +
Sbjct: 1032 NTLLKTEKEELNRR---IHDQAKEITETMEKKLVEETKQLELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 20/143 (13%), Positives = 51/143 (35%), Gaps = 10/143 (6%)

Query: 393  DQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTK---- 448
             +   L   +  +E    T    +   + RL            +V  L+ E+   +    
Sbjct: 942  KEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELH 1001

Query: 449  --QKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVK 506
              Q  K+T+++     +    Q+  +++E        + +L  +       ++ E +   
Sbjct: 1002 QTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIH----DQAKEITETM 1057

Query: 507  DKNVLQELDATKEQLENLSKRYE 529
            +K +++E    +  L +   RY+
Sbjct: 1058 EKKLVEETKQLELDLNDERLRYQ 1080

>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A Length = 156

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 21/106 (19%)

Query: 70  YRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFP--------------KKNIPPAP 115
           + V   L +      TR + R + +F  L   L  AFP              K+ +P  P
Sbjct: 35  FLVCCELSN----GKTRQLKRYYQDFYDLQVQLLDAFPAEAGKLRDAGGQWSKRIMPYIP 90

Query: 116 PKGLLRMKSRALLEERRCSLEEWMTKLLS-DIDLSRSVSVASFLEL 160
             G +   + ++ ++R+  L  ++  L++    +SRS  V S   +
Sbjct: 91  --GPVPYVTNSITKKRKEDLNIYVADLVNLPDYISRSEMVHSLFVV 134

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Length = 155

 Score = 43.4 bits (102), Expect = 5e-05
 Identities = 28/156 (17%), Positives = 62/156 (39%), Gaps = 5/156 (3%)

Query: 436 KVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNP 495
           ++K LE ++E    K+   L+  +   ++ L + +   E    KS E+E +LK+  +   
Sbjct: 1   RMKQLEDKVEELLSKNYH-LENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLK 59

Query: 496 HAESMEES-TVKDKNVLQELDATKEQLENLSKRYEELEAKSKA---DIKVLVKEVKFLRS 551
             E+  E  + K+    +E+    ++L+    R E  E         I  L  E+   + 
Sbjct: 60  SLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKL 119

Query: 552 SQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTV 587
               + +E+ Q+ ++  +              +K +
Sbjct: 120 KYKAISEEMKQLEDKVEELLSKNYHLENEVARLKKL 155

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score = 41.5 bits (96), Expect = 8e-04
 Identities = 34/209 (16%), Positives = 76/209 (36%), Gaps = 2/209 (0%)

Query: 409 LVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQ 468
           L+    D E     +    + KD      K+L  +LE  +    +  Q+A       L Q
Sbjct: 353 LLDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQ 412

Query: 469 MQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRY 528
           + +   E   K+         +       +  ++   + +  +Q  +  +  L++     
Sbjct: 413 VIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKES-M 471

Query: 529 EELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELL-QQERQTHNHMKTV 587
            +   ++   +    KE++  R      +     +   + K E+++ Q+ER    H+K +
Sbjct: 472 TDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQL 531

Query: 588 REKLLHECRILLNRFQACNANLYAEEEDN 616
            EK+ ++   LL   +   A    E+E  
Sbjct: 532 TEKMENDRVQLLKEQERTLALKLQEQEQL 560

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	724
3lui_A	115	Sorting nexin-17, SNX17; PX domain, endosome, phos	99.91
3iq2_A	138	Sorting nexin-7; SNX7, PHOX, protein signalling, S	99.91
2csk_A	146	Sorting nexin 12; SNX12, PX domain, structural gen	99.89
2i4k_A	128	Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 al	99.89
4az9_A	129	Sorting nexin-24; protein transport; 1.75A {Homo s	99.89
1ocs_A	162	Sorting nexin GRD19; sorting protein, PX-domain, y	99.88
3p0c_A	130	Nischarin; structural genomics, structural genomic	99.88
1xte_A	154	Serine/threonine-protein kinase SGK3; CISK, PX dom	99.88
3dyt_A	366	Sorting nexin-9; 3-helix bundle, BAR domain, PX do	99.88
4akv_A	386	Sorting nexin-33; transport protein, organelle bio	99.88
2v14_A	134	Kinesin-like motor protein C20ORF23; plus-END kine	99.87
1kmd_A	117	VAM7P, vacuolar morphogenesis protein VAM7; PX dom	99.87
1h6h_A	143	Neutrophil cytosol factor 4; PX domain; HET: PIB;	99.85
3hpc_X	161	SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosph	99.84
2ar5_A	121	Phosphoinositide 3-kinase; PX domain, transferase;	99.83
2ett_A	128	Sorting nexin-22; PX domain, BC019655, SNX22_human	99.83
1kq6_A	141	NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha	99.81
2iwl_X	140	Phosphatidylinositol-4-phosphate 3-kinase C2 domai	99.8
2v6v_A	156	BUD emergence protein 1; homotypic fusion, regulat	99.74
2l73_A	149	NADPH oxidase organizer 1; cell membrane, PX domai	99.7
2wwe_A	127	Phosphoinositide-3-kinase, class 2, gamma polypept	99.68
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	99.56
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	97.64
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	97.53
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	97.19
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	97.18
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.08
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	95.78
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	95.5
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	94.74
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	94.73
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	94.15
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	93.87
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	93.74
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	93.65
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	92.83
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	91.98
1s35_A	214	Beta-I spectrin, spectrin beta chain, erythrocyte;	91.56
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	91.42
1nfn_A	191	Apolipoprotein E3; lipid transport, heparin-bindin	90.84
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	88.38
3s84_A	273	Apolipoprotein A-IV; four helix bundle, transport	85.94
3s84_A	273	Apolipoprotein A-IV; four helix bundle, transport	83.08
3fb2_A	218	Spectrin alpha chain, brain spectrin; non-erythroi	82.88
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	82.21
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	82.2
3kbt_A	326	Beta-I spectrin, spectrin beta chain, erythrocyte;	81.43
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	80.21

>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A

Probab=99.91  E-value=3.5e-25  Score=199.18  Aligned_cols=106  Identities=26%  Similarity=0.376  Sum_probs=93.5

Q ss_pred             EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHH
Q 004913           48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRAL  127 (724)
Q Consensus        48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eF  127 (724)
                      +.|+||++....+..|+++||+|.|+|.        ..|.|.||||||.+||..|++.||...+|+||+|.+++ ++++|
T Consensus         4 l~v~Ip~~~~~~~~~g~~~y~~Y~I~v~--------~~~~V~RRYsdF~~L~~~L~~~~~~~~~P~lP~K~~~~-~~~~~   74 (115)
T 3lui_A            4 MHFSIPETESRSGDSGGSAYVAYNIHVN--------GVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFS-LTPAE   74 (115)
T ss_dssp             -CEEEEEEEEEC-----CCEEEEEEEET--------TEEEEEEEHHHHHHHHHHHHHHHCSTTSCCCCCCCSSC-CCHHH
T ss_pred             EEEEECCeEEecCCCCCCCEEEEEEEEC--------CeEEEEecHHHHHHHHHHHHHHcCCCcCCCCCCCcccC-CCHHH
Confidence            4799999998876667789999999982        48999999999999999999999998899999999885 68899


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcch
Q 004913          128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEA  162 (724)
Q Consensus       128 LEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa  162 (724)
                      ||+||.+||.||++|+.||.|++|+.|+.||+.+.
T Consensus        75 ie~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~~  109 (115)
T 3lui_A           75 VEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQ  109 (115)
T ss_dssp             HHHHHHHHHHHHHHHHHSHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcChhhhcChHHHHHHCcCH
Confidence            99999999999999999999999999999998764

>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens}

Probab=99.91  E-value=1.3e-24  Score=201.78  Aligned_cols=117  Identities=23%  Similarity=0.302  Sum_probs=100.0

Q ss_pred             EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC----CC
Q 004913           48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR----MK  123 (724)
Q Consensus        48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg----~~  123 (724)
                      +.|.|..+....+  +.++||+|.|.|.+..+.+....|.|.||||||.+||..|++.||...+||||+|.+++    ++
T Consensus         9 l~i~V~dp~~~~~--g~~~yv~Y~I~v~t~~~~f~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~~~~~~~~   86 (138)
T 3iq2_A            9 LFITVDEPESHVT--TIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVERF   86 (138)
T ss_dssp             CEEEEEEEEEEEC--SSCEEEEEEEEEESCSSSSSCCEEEEEEEHHHHHHHHHHHHHHCTTSCCCCCCCCC----CCGGG
T ss_pred             EEEEECCCEEecC--CCCCEEEEEEEEEECCCCcCCCeEEEEcChHHHHHHHHHHHHHCcCcccCCCCcchhhccccccC
Confidence            4677777766543  56889999999987766666789999999999999999999999999999999998764    45


Q ss_pred             CHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcchhhhh
Q 004913          124 SRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAARS  166 (724)
Q Consensus       124 s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa~aRs  166 (724)
                      +++|||+||.+||.||++|+.||.|++|+.|+.||+.+...++
T Consensus        87 ~~~fie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~~~~~~  129 (138)
T 3iq2_A           87 NDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTAQAWELS  129 (138)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHSTTGGGCHHHHHHHHTTCBC--
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCHhhhcChHHHhhhCCCCCCcc
Confidence            8999999999999999999999999999999999999877655

>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.89  E-value=1.3e-23  Score=195.61  Aligned_cols=114  Identities=24%  Similarity=0.294  Sum_probs=97.8

Q ss_pred             EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc-------
Q 004913           48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL-------  120 (724)
Q Consensus        48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~f-------  120 (724)
                      +.|.|..+....+  +.++||+|.|+|.+..+......|.|.||||||.+||+.|++. |...+||||+|.++       
T Consensus        11 l~i~V~dp~~~~~--g~~~yv~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~iP~lP~K~~~~~~~~~~   87 (146)
T 2csk_A           11 LEIDIFNPQTVGV--GRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERD-SKIVVPPLPGKALKRQLPFRG   87 (146)
T ss_dssp             CEEEEEEEEEESS--SSSCEEEEEEEEECCCSSSSCSEEEEEECHHHHHHHHHHHSSS-SSCCCCCCSCCCCCCSSTTCC
T ss_pred             EEEEEcCceEecC--CCCCEEEEEEEEEECCCCcCcCceEEEecHHHHHHHHHHHHhc-cCCcCCCCCCCchhhcccccc
Confidence            4566666665443  4688999999997665555567999999999999999999876 77889999999876       


Q ss_pred             --CCCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcchhh
Q 004913          121 --RMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAA  164 (724)
Q Consensus       121 --g~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa~a  164 (724)
                        ++++++|||+||.+||.||++|+.||.|++|+.|+.||+.+...
T Consensus        88 ~~g~~~~~fie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~~~~  133 (146)
T 2csk_A           88 DEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQEEAID  133 (146)
T ss_dssp             CSSCCCHHHHHHHHHHHHHHHHHHHHCHHHHHCHHHHHHTTCSSCC
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHcChhhccCcHHHhhcCCCchh
Confidence              56789999999999999999999999999999999999988543

>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens}

Probab=99.89  E-value=2.7e-24  Score=193.61  Aligned_cols=112  Identities=29%  Similarity=0.444  Sum_probs=97.5

Q ss_pred             EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCC--CCCCCCCCCCcccCC---
Q 004913           48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFP--KKNIPPAPPKGLLRM---  122 (724)
Q Consensus        48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP--~~~LPpLPPKk~fg~---  122 (724)
                      +.|+|+++....+  +.++|++|.|+|.+..+.+....|.|.||||||.+||+.|+..||  +..+||||+|++++.   
T Consensus         4 l~v~V~~~~~~~~--g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iP~lP~K~~~~~~~~   81 (128)
T 2i4k_A            4 LTVGITDPEKIGD--GMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKV   81 (128)
T ss_dssp             CCCCBCCCCBCCC--SSCCCBCCCBCCCCCSSSSCSSCCCBCCCHHHHHHHHHHHHHTCSSSSCCCCSSSSCCSSSSSSC
T ss_pred             EEEEECCceEecC--CCcCEEEEEEEEEEcCCCCCCCeEEEEeEhHHHHHHHHHHHHhCCCCCcCcCCCCCCcccchhhh
Confidence            4678888876543  467899999999766555556899999999999999999999997  478999999987763   


Q ss_pred             -------CCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcc
Q 004913          123 -------KSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE  161 (724)
Q Consensus       123 -------~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElE  161 (724)
                             ++++|||+||.+||.||++|+.||.|++|+.|+.||+.+
T Consensus        82 ~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~  127 (128)
T 2i4k_A           82 KVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKE  127 (128)
T ss_dssp             CCCSCCCSSTTHHHHHHHHHHHHHHHHHHCHHHHCSHHHHTTTTCC
T ss_pred             hhcCCCCCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHhhCCC
Confidence                   378999999999999999999999999999999999875

>4az9_A Sorting nexin-24; protein transport; 1.75A {Homo sapiens}

Probab=99.89  E-value=7.4e-23  Score=188.71  Aligned_cols=125  Identities=23%  Similarity=0.318  Sum_probs=93.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCceEEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEE
Q 004913           10 HRHDGTSPLPLGMDWSPAPRKWNGRDTVWPHDPRTGWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVL   89 (724)
Q Consensus        10 ~r~d~~s~lplg~dwsppp~~~~g~dtvwphd~rtGwSy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~   89 (724)
                      |.|--.|+..+|-+.+....                  ..|+||++...... .+++|++|.|+|.+.     +..|.|.
T Consensus         3 ~~~~~ssgvd~~~en~~~~~------------------~~V~Ip~~~~~~~~-~~k~y~vY~I~v~~~-----~~~w~V~   58 (129)
T 4az9_A            3 HHHHHSSGVDLGTENLYFQS------------------MEVYIPSFRYEESD-LERGYTVFKIEVLMN-----GRKHFVE   58 (129)
T ss_dssp             -----------CCTTCCCCC------------------CEEEEEEEEEECCT-TSCCEEEEEEEEEET-----TEEEEEE
T ss_pred             ccccccCcccccccccccce------------------eEEEECcEEEEecC-CCCCEEEEEEEEEEC-----CEEEEEE
Confidence            44545556667766655433                  48999999876543 457899999999542     3689999


Q ss_pred             ccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcchh
Q 004913           90 RRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAA  163 (724)
Q Consensus        90 RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa~  163 (724)
                      ||||||.+||..|++.||   +|++|+|++ ++++++|||+||.+||.||+.|+.+|.+. ++.|.+||+++..
T Consensus        59 RRYsdF~~L~~~L~~~~~---~p~lP~K~~-~~~~~~~ie~Rr~~Le~yL~~ll~~~~~~-~~~l~~FL~~~~~  127 (129)
T 4az9_A           59 KRYSEFHALHKKLKKCIK---TPEIPSKHV-RNWVPKVLEQRRQGLETYLQAVILENEEL-PKLFLDFLNVRHL  127 (129)
T ss_dssp             EEHHHHHHHHHHHTTTSC---CCCCCCSCC-SCCCHHHHHHHHHHHHHHHHHHHHHCSSC-CHHHHHHTTC---
T ss_pred             eeHHHHHHHHHHHHHhCC---CCCCCcccc-cCCCHHHHHHHHHHHHHHHHHHHhCchhh-CHHHHHHCCCCCC
Confidence            999999999999999887   688888875 56789999999999999999999999875 8899999998753

>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A*

Probab=99.88  E-value=5.4e-23  Score=195.49  Aligned_cols=115  Identities=24%  Similarity=0.271  Sum_probs=99.1

Q ss_pred             EEEEecceEEcc--CCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHC-----CCCCCCCCCCCccc
Q 004913           48 YCVTIPSWVVLP--KSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAF-----PKKNIPPAPPKGLL  120 (724)
Q Consensus        48 y~VsIPS~~~v~--~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~f-----P~~~LPpLPPKk~f  120 (724)
                      +.|.|..+....  ...+.++||+|.|+|.+..+.+....|.|.||||||.+||..|++.|     |+..+|+||+|+++
T Consensus        36 l~i~V~dp~~~~~~g~~~~~~yv~Y~I~v~~~~~~f~~~~~~V~RRYsdF~~Lh~~L~~~~~~~~~p~~~iP~lP~K~~~  115 (162)
T 1ocs_A           36 LEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILL  115 (162)
T ss_dssp             EEEEEEEEEEECCCSTTSCCCEEEEEEEEEECCTTCSCSEEEEEEEHHHHHHHHHHHHHHHHHTTCTTCCCCCCTTCCCS
T ss_pred             EEEEEeCCEEeeccCCCCCCCeEEEEEEEEECCCCCCcceeEEEeeHHHHHHHHHHHHHHhccccCCCccCCCCCCCccc
Confidence            566666665541  11367899999999987766666689999999999999999999999     89999999999986


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHhcccCCCC-CHHHhhccCcch
Q 004913          121 -RMKSRALLEERRCSLEEWMTKLLSDIDLSR-SVSVASFLELEA  162 (724)
Q Consensus       121 -g~~s~eFLEERR~gLEkYLqrLLshP~Ls~-S~~L~sFLElEa  162 (724)
                       ++++++|||+||.+||.||++|+.||.|++ |+.|+.||+.+.
T Consensus       116 ~~~~~~~fie~Rr~~Le~fL~~l~~~p~l~~~s~~l~~FL~~~~  159 (162)
T 1ocs_A          116 SNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAEK  159 (162)
T ss_dssp             SCTTSHHHHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHCSS
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHcCHHhhhCCHHHHHhCCCcc
Confidence             467899999999999999999999999998 999999998763

>3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens}

Probab=99.88  E-value=2.3e-23  Score=191.68  Aligned_cols=109  Identities=25%  Similarity=0.279  Sum_probs=93.4

Q ss_pred             EEEecceEEcc-CCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHH
Q 004913           49 CVTIPSWVVLP-KSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRAL  127 (724)
Q Consensus        49 ~VsIPS~~~v~-~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eF  127 (724)
                      +|.||++.... .....++|++|.|+|...     ...|.|.||||||.+||..|++.||. .+|+||||+++++++++|
T Consensus        17 ~v~ips~~v~I~~~~~~~~y~~Y~I~v~~~-----~~~~~V~RRYSdF~~L~~~L~~~~~~-~~p~lP~K~~~g~~~~~~   90 (130)
T 3p0c_A           17 NLYFQSMEARVVGSELVDTYTVYIIQVTDG-----SHEWTVKHRYSDFHDLHEKLVAERKI-DKNLLPPKKIIGKNSRSL   90 (130)
T ss_dssp             CCCEECCEEEEEEEECSSSSCEEEEEEECS-----SCEEEEEEEHHHHHHHHHHHHHTTSS-CTTSCCCCCCCSCCCSCS
T ss_pred             eeEeeeeEEEEEeccccCCEEEEEEEEEEC-----CeEEEEEehHHHHHHHHHHHHHHcCC-CCCCCCCccccccCCHHH
Confidence            56677765422 222457899999999542     46999999999999999999999985 478999999999889999


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcchh
Q 004913          128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAA  163 (724)
Q Consensus       128 LEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa~  163 (724)
                      ||+||.+||.||++|+.||.+++|+.|+.||+.+.+
T Consensus        91 ie~Rr~~Le~yL~~l~~~p~l~~s~~l~~FL~~~~~  126 (130)
T 3p0c_A           91 VEKREKDLEVYLQKLLAAFPGVTPRVLAHFLHFHFY  126 (130)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCSEECHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHHHHHcChhhhcCHHHHHHhCCCcc
Confidence            999999999999999999999999999999988754

>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A

Probab=99.88  E-value=5.5e-23  Score=193.54  Aligned_cols=108  Identities=27%  Similarity=0.455  Sum_probs=96.6

Q ss_pred             EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC-CCCHH
Q 004913           48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR-MKSRA  126 (724)
Q Consensus        48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg-~~s~e  126 (724)
                      ..|+||++....+  +++.|++|.|+|...     ...|.|.||||||.+||..|++.||...+ |||+|++++ +++++
T Consensus         8 ~~v~I~~~~~~~~--~~~~~~~Y~I~v~~~-----~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~-plP~K~~~g~~~~~~   79 (154)
T 1xte_A            8 PSVSIPSSDEHRE--KKKRFTVYKVLVSVG-----RSEWFVFRRYAEFDKLYNSLKKQFPAMAL-KIPAKRIFGDNFDPD   79 (154)
T ss_dssp             CEEEEEEEEEEEE--TTEEEEEEEEEEEET-----TEEEEEEEEHHHHHHHHHHHHHHCGGGCC-CCCCSCCSSCTTCHH
T ss_pred             CEEEECCcEEEec--CCCCEEEEEEEEEEC-----CEEEEEEeeHHHHHHHHHHHHHHCCCCcc-cCCCccccCCCCCHH
Confidence            4899999987654  467899999999642     36899999999999999999999998654 599999988 78999


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcchh
Q 004913          127 LLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAA  163 (724)
Q Consensus       127 FLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa~  163 (724)
                      |||+||.+||.||+.|+.||.+++|+.|+.||+.+..
T Consensus        80 ~ie~Rr~~Le~yL~~l~~~p~l~~s~~l~~FL~~~~~  116 (154)
T 1xte_A           80 FIKQRRAGLNEFIQNLVRYPELYNHPDVRAFLQMDSP  116 (154)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHTSHHHHHHTTTTCG
T ss_pred             HHHHHHHHHHHHHHHHHcChhhccChHHHHHhCCCCC
Confidence            9999999999999999999999999999999988754

>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*

Probab=99.88  E-value=1.3e-23  Score=221.44  Aligned_cols=126  Identities=20%  Similarity=0.245  Sum_probs=98.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCceEEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEcc
Q 004913           12 HDGTSPLPLGMDWSPAPRKWNGRDTVWPHDPRTGWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRR   91 (724)
Q Consensus        12 ~d~~s~lplg~dwsppp~~~~g~dtvwphd~rtGwSy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RR   91 (724)
                      |..+.+ +.|+.|.||+.+.                 .|.|..+...+...|.++||+|.|.+.       +..|.|.||
T Consensus         3 ~~~~~~-~~~~~w~~~~~~~-----------------~i~V~dp~k~~~~~g~~~y~~Y~I~~~-------~~~~~V~RR   57 (366)
T 3dyt_A            3 IPIIVG-DYGPMWVYPTSTF-----------------DCVVADPRKGSKMYGLKSYIEYQLTPT-------NTNRSVNHR   57 (366)
T ss_dssp             EEEEEE-TTEEEECCCSSCC-----------------CEEEECGGGSSSCCCCCSSCEEEEEET-------TCSCCEEEE
T ss_pred             eEEEeC-CCCCcccCCCCCe-----------------EEEEcCceeecCCCCCcCeEEEEEEEe-------cCcEEEEee
Confidence            334444 7899999999865                 566666665443346679999999983       248999999


Q ss_pred             chhHHHHHHHHHHHCCC-CCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcch
Q 004913           92 FNNFLKLFTDLKKAFPK-KNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEA  162 (724)
Q Consensus        92 YSDF~~Lh~~Lkk~fP~-~~LPpLPPKk~fg~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa  162 (724)
                      ||||.|||..|...||. +.+||||||.++++++++||++||.+||.||++|+.||.|++|+.|+.||+.+.
T Consensus        58 YsdF~~L~~~L~~~~p~~~~iP~lP~K~~~g~~~~~fie~Rr~~Le~fL~~i~~~p~l~~~~~~~~FL~~~~  129 (366)
T 3dyt_A           58 YKHFDWLYERLLVKFGSAIPIPSLPDKQVTGRFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRD  129 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTTSCCCCCC-----------CHHHHHHHHHHHHHHHHTCTTGGGSHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHHhCCCcCcCCCCcCCcccCCCCHHHHHHHHHHHHHHHHHHhCCHhhhCCcHHHHhhCCCc
Confidence            99999999999999999 999999999999988999999999999999999999999999999999999863

>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}

Probab=99.88  E-value=2e-23  Score=222.16  Aligned_cols=120  Identities=22%  Similarity=0.359  Sum_probs=90.3

Q ss_pred             CCCCCCCCCCCCCCCCCCcCCCCCCCCceEEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHH
Q 004913           19 PLGMDWSPAPRKWNGRDTVWPHDPRTGWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKL   98 (724)
Q Consensus        19 plg~dwsppp~~~~g~dtvwphd~rtGwSy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~L   98 (724)
                      +.|+.|.|+|.++                 .|.|.++....+..|.++||+|.|.+.       ...|.|.||||||.||
T Consensus        30 ~~~~~w~~~~~~~-----------------~i~V~dp~k~~~~~g~~~y~~Y~I~~~-------~~~~~V~RRYsdF~~L   85 (386)
T 4akv_A           30 PRGPQWKANPHPF-----------------ACSVEDPTKQTKFKGIKSYISYKLTPT-------HAASPVYRRYKHFDWL   85 (386)
T ss_dssp             TTSSEECCCSSCC-----------------CEEEECC------------CCEEEEET-------TSSSCEEECHHHHHHH
T ss_pred             CCCceeecCCCCe-----------------EEEEcCceEecCCCCCcCeEEEEEEEE-------eCCeEEEcCHHHHHHH
Confidence            4555677766644                 566667666553346679999999983       2479999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcch
Q 004913           99 FTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEA  162 (724)
Q Consensus        99 h~~Lkk~fP~~~LPpLPPKk~fg~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa  162 (724)
                      |..|...||.+.+||||||.++++++++||++||.+||.||++|+.||.|++|+.|+.||+.+.
T Consensus        86 ~~~L~~~~p~~~iP~lP~K~~~g~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~~~  149 (386)
T 4akv_A           86 YNRLLHKFTVISVPHLPEKQATGRFEEDFIEKRKRRLILWMDHMTSHPVLSQYEGFQHFLSCLD  149 (386)
T ss_dssp             HHHHHHHCSSSCCCCCCCCC------CCTTTHHHHHHHHHHHHHHTCTTGGGCHHHHHHHSCCC
T ss_pred             HHHHHHhCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHhCCHhhhCCcHHHHHhCCCC
Confidence            9999999999999999999999988999999999999999999999999999999999999863

>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens}

Probab=99.87  E-value=2.9e-22  Score=184.99  Aligned_cols=110  Identities=24%  Similarity=0.369  Sum_probs=95.0

Q ss_pred             EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHH
Q 004913           48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRAL  127 (724)
Q Consensus        48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eF  127 (724)
                      ..|+||++....+  ++++|++|.|+|.+.     ...|.|.||||||.+||..|++.||...+|+||||+++++++++|
T Consensus         6 i~VsIp~~~~~~~--~~~~~~~Y~I~v~~~-----~~~~~V~RRYsdF~~L~~~L~~~~p~~~~p~lP~K~~~~~~~~~~   78 (134)
T 2v14_A            6 IKISIPRYVLCGQ--GKDAHFEFEVKITVL-----DETWTVFRRYSRFREMHKTLKLKYAELAALEFPPKKLFGNKDERV   78 (134)
T ss_dssp             EEEEEEEEEEESS--TTSCEEEEEEEEEET-----TEEEEEEECHHHHHHHHHHHHHHCGGGGGCCCCCCCSSCTTSHHH
T ss_pred             EEEEECcEEEEec--CCCCEEEEEEEEEEC-----CeEEEEEeeHHHHHHHHHHHHHHCCCCCCCCCcCCccccCCCHHH
Confidence            5899999998754  568999999999643     369999999999999999999999988899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccC-CCCCHHHhh--ccCcchhh
Q 004913          128 LEERRCSLEEWMTKLLSDID-LSRSVSVAS--FLELEAAA  164 (724)
Q Consensus       128 LEERR~gLEkYLqrLLshP~-Ls~S~~L~s--FLElEa~a  164 (724)
                      ||+||.+||.||+.|+.||. +++|+.+..  +|......
T Consensus        79 ie~Rr~~Le~yL~~ll~~~~~l~~sp~~l~~~~~~~~k~~  118 (134)
T 2v14_A           79 IAERRSHLEKYLRDFFSVMLQSATSPLHINKVGLTLSKHT  118 (134)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTSTTCTTSTTCCCSHHH
T ss_pred             HHHHHHHHHHHHHHHHhChHhhcCCHHHHccccCCccHHH
Confidence            99999999999999999997 888875432  35555433

>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1

Probab=99.87  E-value=1.3e-22  Score=182.52  Aligned_cols=99  Identities=24%  Similarity=0.417  Sum_probs=89.2

Q ss_pred             EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCC-CCCCCccc------
Q 004913           48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIP-PAPPKGLL------  120 (724)
Q Consensus        48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LP-pLPPKk~f------  120 (724)
                      +.|+||++..      .++|++|.|+|         ..|.|.||||||.+||+.|++.|| ..+| +||+|.++      
T Consensus         6 ~~v~I~~~~~------~~~~~~Y~I~v---------~~~~V~RRYsdF~~L~~~L~~~~~-~~~P~~lP~K~~~~~~~~~   69 (117)
T 1kmd_A            6 LRIKVDDVKI------NPKYVLYGVST---------PNKRLYKRYSEFWKLKTRLERDVG-STIPYDFPEKPGVLDRRWQ   69 (117)
T ss_dssp             CCCEEEEEEE------CSSCEEEEEEC---------SSCCEEECHHHHHHHHHHHHHHHC-SCCCCCCCCCCCSSCSTTC
T ss_pred             EEEEECCcee------cCCEEEEEEEE---------ceEEEEechHHHHHHHHHHHHHcC-ccCCCCCCCCCEecccccc
Confidence            4789999986      36799999988         389999999999999999999999 5789 99999875      


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHhcccCC---CCCHHHhhccCcch
Q 004913          121 -RMKSRALLEERRCSLEEWMTKLLSDIDL---SRSVSVASFLELEA  162 (724)
Q Consensus       121 -g~~s~eFLEERR~gLEkYLqrLLshP~L---s~S~~L~sFLElEa  162 (724)
                       ++++++|||+||.+||.||+.|+.||.+   ++|+.|+.||+.+.
T Consensus        70 ~~~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~~~~s~~l~~FL~~~~  115 (117)
T 1kmd_A           70 RRYDDPEMIDERRIGLERFLNELYNDRFDSRWRDTKIAQDFLQLSK  115 (117)
T ss_dssp             CCTTCHHHHHHHHTTHHHHHHHHHCCSSCCHHHHSHHHHHHTTCCC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCcchhhhhcCHHHHHhcCCCC
Confidence             5788999999999999999999999965   78999999999874

>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1

Probab=99.85  E-value=2.2e-21  Score=179.42  Aligned_cols=110  Identities=18%  Similarity=0.223  Sum_probs=94.9

Q ss_pred             CceEEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC--------CCCCCCCC
Q 004913           45 GWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK--------KNIPPAPP  116 (724)
Q Consensus        45 GwSy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~--------~~LPpLPP  116 (724)
                      +..+.|+|+++....   +...|++|.|.|...+    ...|.|+||||||.+||..|++.||.        ..+|+||+
T Consensus        18 ~~~i~v~I~~~e~~~---~~~~~~vY~I~v~~~~----~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~~~~~~~~lP~lP~   90 (143)
T 1h6h_A           18 DVAISANIADIEEKR---GFTSHFVFVIEVKTKG----GSKYLIYRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPA   90 (143)
T ss_dssp             TCEEEEEEEEEEEEC---SSSCEEEEEEEEEETT----SCEEEEEEEHHHHHHHHHHHHHHHSTTCSCGGGCCCCCCCCC
T ss_pred             CCeEEEEEcCccccC---CCCCeEEEEEEEEEcC----CCEEEEEeeHHHHHHHHHHHHHHCccccccCCCCCCcccCCC
Confidence            345789999986532   2357999999996432    36999999999999999999999993        36899999


Q ss_pred             CcccCCCCHHHHHHHHHHHHHHHHHHhcccC-CCCCHHHhhccCcch
Q 004913          117 KGLLRMKSRALLEERRCSLEEWMTKLLSDID-LSRSVSVASFLELEA  162 (724)
Q Consensus       117 Kk~fg~~s~eFLEERR~gLEkYLqrLLshP~-Ls~S~~L~sFLElEa  162 (724)
                      |+++++ +++|||+||.+||.||+.|+.+|. |++|+.|..||+...
T Consensus        91 K~~~~~-~~~~ie~Rr~~Le~yL~~ll~~p~~l~~s~~~~~Fl~~~~  136 (143)
T 1h6h_A           91 KVYVGV-KQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSP  136 (143)
T ss_dssp             CCCSSC-HHHHHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCCH
T ss_pred             CcccCc-CHHHHHHHHHHHHHHHHHHHcCCHhhhcCHHHHHHhCCCc
Confidence            998887 889999999999999999999997 999999999998764

>3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol, PI(4,5)P2, cell adhesion, protein transport; 1.47A {Rattus norvegicus} PDB: 3hpb_A

Probab=99.84  E-value=5e-21  Score=183.42  Aligned_cols=112  Identities=24%  Similarity=0.271  Sum_probs=95.8

Q ss_pred             CceEEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHH--HCCCCCCCCCCCCcccC-
Q 004913           45 GWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKK--AFPKKNIPPAPPKGLLR-  121 (724)
Q Consensus        45 GwSy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk--~fP~~~LPpLPPKk~fg-  121 (724)
                      .-.+.|.|..+....      .||+|.|++.+..|.+....|.|.||||||.|||..|..  .||++.+||||+|.+++ 
T Consensus         9 ~~~l~i~V~dp~~~~------~~v~Y~I~t~t~~p~f~~~~~~V~RRysdF~~L~~~L~~~~~~p~~iiPplP~K~~~~~   82 (161)
T 3hpc_X            9 DPSLQIDIPDALSER------DKVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAPTKPDFDG   82 (161)
T ss_dssp             SCSEEEEEEEEEEET------TEEEEEEEEEECCTTSSSSEEEEEECHHHHHHHHHHHHHCGGGTTSCCCCCCCCCCCHH
T ss_pred             CCeEEEEECCCeEec------CCEEEEEEEEeCCcccCCCcceEEecHHHHHHHHHHHHhhccCCccccCCCCCcccccc
Confidence            334788888887642      299999999888887778899999999999999999998  89999999999998763 


Q ss_pred             -------------C------------CCHHHHHHHH---HHHHHHHHHHhcccCCCCCHHHhhccCcch
Q 004913          122 -------------M------------KSRALLEERR---CSLEEWMTKLLSDIDLSRSVSVASFLELEA  162 (724)
Q Consensus       122 -------------~------------~s~eFLEERR---~gLEkYLqrLLshP~Ls~S~~L~sFLElEa  162 (724)
                                   +            ++++|||+||   .+||.||++|+.||.|++|+.|+.||+.+.
T Consensus        83 ~~~K~~~~g~~~~~~~~e~~~~~r~~~~~efie~Rrkrr~~Le~FL~ri~~HP~L~~d~~~~~FL~~~~  151 (161)
T 3hpc_X           83 PREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQ  151 (161)
T ss_dssp             HHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGCHHHHHHHHCCS
T ss_pred             hhhhhhcccccccccchhHhhhhcccccHHHHHHHHHHHHHHHHHHHHHHcCCCcccCcHHHhhcCCCc
Confidence                         1            2468999754   569999999999999999999999998874

>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo sapiens} PDB: 2rea_A 2red_A

Probab=99.83  E-value=1.6e-20  Score=170.43  Aligned_cols=112  Identities=19%  Similarity=0.310  Sum_probs=94.5

Q ss_pred             CCceEEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCC
Q 004913           44 TGWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMK  123 (724)
Q Consensus        44 tGwSy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~  123 (724)
                      .|....|.|+++.....  +.+.|+ |.|.|.....   ...|.|+||||||.+||.+|++.||...+|+||+|++++++
T Consensus         2 ~~~i~~v~V~~~ek~~~--~~k~y~-Y~I~v~~~~~---~~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP~K~~~g~~   75 (121)
T 2ar5_A            2 DGRIKEVSVFTYHKKYN--PDKHYI-YVVRILREGQ---IEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVLGRT   75 (121)
T ss_dssp             CSSEEEEEEEEEECCCS--SSSCCE-EEEEEEETTC---SSCEEEEEEHHHHHHHHHHHHHHSCGGGSCCCCCCCCSSSS
T ss_pred             CCeEEEEEECcEEEEec--CCCcEE-EEEEEEECCC---ceeEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCeecCcc
Confidence            35566899999986543  344454 9999965432   15899999999999999999999999899999999988765


Q ss_pred             -CHHHHHHHHHHHHHHHHHHhcc-cCCCCCHHHhhccCcc
Q 004913          124 -SRALLEERRCSLEEWMTKLLSD-IDLSRSVSVASFLELE  161 (724)
Q Consensus       124 -s~eFLEERR~gLEkYLqrLLsh-P~Ls~S~~L~sFLElE  161 (724)
                       +++|+|+||.+||.||+.|++. |.|++|+.|..||+..
T Consensus        76 ~~~~~~e~Rr~~Le~yL~~ll~~p~~i~~s~~v~~Ff~~~  115 (121)
T 2ar5_A           76 HIKDVAAKRKIELNSYLQSLMNASTDVAECDLVCTFFHGS  115 (121)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHTSCHHHHTSHHHHHHTSSS
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhCCchhcCCHHHHHHcCCc
Confidence             5799999999999999999986 6999999999999865

>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607, structural genomics,protein structure initiative PSI; NMR {Homo sapiens}

Probab=99.83  E-value=9.5e-21  Score=174.46  Aligned_cols=92  Identities=26%  Similarity=0.346  Sum_probs=82.0

Q ss_pred             CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Q 004913           63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKL  142 (724)
Q Consensus        63 ~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eFLEERR~gLEkYLqrL  142 (724)
                      ++++|++|.|.|.+.     ...|.|.||||||.+||+.|++.||   +|+||+|.++ +++++|||+||.+||.||+.|
T Consensus        28 ~~~~~~~Y~I~v~~~-----~~~~~V~RRYSdF~~Lh~~L~~~~~---iP~lP~K~~~-~~~~~~ie~Rr~~Le~yL~~l   98 (128)
T 2ett_A           28 PEKSHMVFRVEVLCS-----GRRHTVPRRYSEFHALHKRIKKLYK---VPDFPSKRLP-NWRTRGLEQRRQGLEAYIQGI   98 (128)
T ss_dssp             SSCCCCEEEEEEEET-----TEEEEEEEEHHHHHHHHHHHHTTSS---CCCCCCSSCC-CSSSSCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEEEEEEC-----CcEEEEECCHHHHHHHHHHHHHHCC---CCCCCCCccC-CCCHHHHHHHHHHHHHHHHHH
Confidence            467899999999653     3689999999999999999999986   7999999965 567899999999999999999


Q ss_pred             hcccCCCCCHHHhhccCcchhh
Q 004913          143 LSDIDLSRSVSVASFLELEAAA  164 (724)
Q Consensus       143 LshP~Ls~S~~L~sFLElEa~a  164 (724)
                      +.+|.+. ++.|..||+.+.+.
T Consensus        99 l~~p~~~-s~~l~~FL~~~~~~  119 (128)
T 2ett_A           99 LYLNQEV-PKELLEFLRLRHFP  119 (128)
T ss_dssp             HHHSSSS-CHHHHHHHTCTTCC
T ss_pred             HhCchhc-CHHHHHhcCCccCC
Confidence            9999887 79999999988643

>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A

Probab=99.81  E-value=1.7e-19  Score=167.22  Aligned_cols=110  Identities=21%  Similarity=0.313  Sum_probs=92.9

Q ss_pred             CceEEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCC---------CCCCCC
Q 004913           45 GWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKK---------NIPPAP  115 (724)
Q Consensus        45 GwSy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~---------~LPpLP  115 (724)
                      |....|.|+++.....   ...|++|.|.|....    ...|.|+||||||.+||..|+..||..         .+|+||
T Consensus         4 ~~i~~v~V~~~ek~~~---~~~~~~Y~I~V~~~~----~~~~~V~RRYsdF~~Lh~~L~~~fp~~~g~~~~~~~~lP~lP   76 (141)
T 1kq6_A            4 TFIRHIALLGFEKRFV---PSQHYVYMFLVKWQD----LSEKVVYRRFTEIYEFHKTLKEMFPIEAGAINPENRIIPHLP   76 (141)
T ss_dssp             SCEEEEEEEEEEEECS---SSCEEEEEEEEEETT----CCEEEEEECHHHHHHHHHHHHHHCTTTTTSSCGGGCCSCCCC
T ss_pred             ceEEEEEEccEEEecC---CCCeEEEEEEEEEcC----CCEEEEEecHHHHHHHHHHHHHHCchhhcccCccccccCCCC
Confidence            4556889998876433   245778999996543    358999999999999999999999964         689999


Q ss_pred             CCcccCCCCHHHHHHHHHHHHHHHHHHhcccC-CCCCHHHhhccCcchh
Q 004913          116 PKGLLRMKSRALLEERRCSLEEWMTKLLSDID-LSRSVSVASFLELEAA  163 (724)
Q Consensus       116 PKk~fg~~s~eFLEERR~gLEkYLqrLLshP~-Ls~S~~L~sFLElEa~  163 (724)
                      +|.++++  .+|+++||.+||.||+.|+.+|. +++|+.|..||+....
T Consensus        77 ~K~~~~~--~~~~e~Rr~~Le~YL~~Ll~~p~~i~~s~~v~~Fl~~~~~  123 (141)
T 1kq6_A           77 APKWFDG--QRAAENRQGTLTEYCSTLMSLPTKISRCPHLLDFFKVRPD  123 (141)
T ss_dssp             CCCCCCS--HHHHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCCHH
T ss_pred             CccccCC--HHHHHHHHHHHHHHHHHHHhCCHhhcCChHHHHHhCCCcc
Confidence            9998774  79999999999999999999874 8999999999987653

>2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide; PI3K, PX domain, transferase; 2.6A {Homo sapiens}

Probab=99.80  E-value=4.4e-20  Score=171.13  Aligned_cols=112  Identities=20%  Similarity=0.310  Sum_probs=88.3

Q ss_pred             CCceEEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCC
Q 004913           44 TGWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMK  123 (724)
Q Consensus        44 tGwSy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~  123 (724)
                      .|....|.|+++.....  + ..|++|.|+|.....   ...|.|.||||||.+||.+|++.||...+|+||+|++++++
T Consensus        17 ~~~i~~v~I~~~ek~~~--~-~k~~~Y~I~V~~~~~---~~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP~K~~~~~~   90 (140)
T 2iwl_X           17 DGRIKEVSVFTYHKKYN--P-DKHYIYVVRILREGQ---IEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVLGRT   90 (140)
T ss_dssp             HCCEEEEEEEEEEECCS--S-SSCEEEEEEEEETTC---SSCEEEEECHHHHHHHHHHHHHHSCGGGSCCCCC-------
T ss_pred             CCeeEEEEECcEEEEec--C-CCeEEEEEEEEECCC---ceeEEEEeEHHHHHHHHHHHHHHCcCccCCCCCCCeecCcc
Confidence            46667899999986543  2 345669999965432   25899999999999999999999999899999999988754


Q ss_pred             -CHHHHHHHHHHHHHHHHHHhc-ccCCCCCHHHhhccCcc
Q 004913          124 -SRALLEERRCSLEEWMTKLLS-DIDLSRSVSVASFLELE  161 (724)
Q Consensus       124 -s~eFLEERR~gLEkYLqrLLs-hP~Ls~S~~L~sFLElE  161 (724)
                       +.+|+++||.+||.||+.|++ +|.+++|+.|..||...
T Consensus        91 ~~~~~~e~Rr~~Le~yL~~Ll~~~~~i~~s~~v~~Fl~~~  130 (140)
T 2iwl_X           91 HIKDVAAKRKIELNSYLQSLMNASTDVAECDLVCTFFHPL  130 (140)
T ss_dssp             ---CCCCHHHHHHHHHHHHHTTSCHHHHTSHHHHHHHSCC
T ss_pred             chHHHHHHHHHHHHHHHHHHHhCCHhhhcCHHHHHHhCCC
Confidence             568999999999999999998 67999999999999864

>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A

Probab=99.74  E-value=8.1e-18  Score=160.03  Aligned_cols=103  Identities=21%  Similarity=0.304  Sum_probs=87.4

Q ss_pred             EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC--------------CCCCC
Q 004913           48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK--------------KNIPP  113 (724)
Q Consensus        48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~--------------~~LPp  113 (724)
                      ..|+||++...     .+ +.+|.|.|...+    ...|.|+||||||.+||..|+..||.              ..+|+
T Consensus        19 ~~~sI~~~~~~-----~~-~y~Y~I~V~~~d----~~~~~V~RRYsdF~~Lh~~L~~~fP~e~g~~~~~~g~~~~~~lP~   88 (156)
T 2v6v_A           19 VKASVESFGLE-----DE-KYWFLVCCELSN----GKTRQLKRYYQDFYDLQVQLLDAFPAEAGKLRDAGGQWSKRIMPY   88 (156)
T ss_dssp             EEEEEEEEEEE-----TT-EEEEEEEEEETT----SCEEEEEECHHHHHHHHHHHHHHCTTTTTCCBCTTCCBCCCCSCC
T ss_pred             eEEEEeeEEEE-----CC-EEEEEEEEEEcC----CCEEEEEEEhHHHHHHHHHHHHHcchhhcccccccccccccccCC
Confidence            57999999863     12 455999997543    36999999999999999999999984              45899


Q ss_pred             CCCCcccCCCCHHHHHHHHHHHHHHHHHHhcc-cCCCCCHHHhhccCcch
Q 004913          114 APPKGLLRMKSRALLEERRCSLEEWMTKLLSD-IDLSRSVSVASFLELEA  162 (724)
Q Consensus       114 LPPKk~fg~~s~eFLEERR~gLEkYLqrLLsh-P~Ls~S~~L~sFLElEa  162 (724)
                      ||+|.+++  +++|+++||.+|+.||+.|+.. +.+++|+.|+.||+...
T Consensus        89 LP~K~~~~--~~~~~e~Rr~~Le~YL~~Ll~lp~~i~~s~~v~~Ff~~~~  136 (156)
T 2v6v_A           89 IPGPVPYV--TNSITKKRKEDLNIYVADLVNLPDYISRSEMVHSLFVVLN  136 (156)
T ss_dssp             CCCCCSSC--CHHHHHHHHHHHHHHHHHHHTSCHHHHTSHHHHHTTSCCS
T ss_pred             CCCCcccC--CHHHHHHHHHHHHHHHHHHHhCCccccCCHHHHHHhCCCC
Confidence            99998763  5799999999999999999984 56999999999998764

>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase regulator; NMR {Homo sapiens}

Probab=99.70  E-value=2.8e-17  Score=155.34  Aligned_cols=96  Identities=21%  Similarity=0.293  Sum_probs=83.6

Q ss_pred             CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC---------CCCCCCCCCcccCC-CCHHHHHHHH
Q 004913           63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK---------KNIPPAPPKGLLRM-KSRALLEERR  132 (724)
Q Consensus        63 ~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~---------~~LPpLPPKk~fg~-~s~eFLEERR  132 (724)
                      +++.|++|.|.|...+    ...|.|+||||||.+||.+|+..||.         ..+|+||+|.++++ .+++++++||
T Consensus        22 ~~~~y~~Y~I~V~~~d----~~~~~V~RRYseF~~Lh~~L~~~FP~e~~~~~~~~r~lP~lP~k~~~~~~~~~~~~e~R~   97 (149)
T 2l73_A           22 QIKRLQTFAFSVRWSD----GSDTFVRRSWDEFRQLKKTLKETFPVEAGLLRRSDRVLPKLLDAPLLGRVGRTSRGLARL   97 (149)
T ss_dssp             CCSSSCEEEEEEEETT----SCEEEEEEEHHHHHHHHHHHHHHCGGGGSSSCSSCCSSCCCCCCSCCSSCCHHHHHHHHH
T ss_pred             CCCceEEEEEEEEEeC----CCEEEEEEehHHHHHHHHHHHHHCchhhcccccccccccCCCCCeeeccccchHHHHHHH
Confidence            4578999999996543    36899999999999999999999982         35899999988875 3579999999


Q ss_pred             HHHHHHHHHHhcccC-CCCCHHHhhccCcch
Q 004913          133 CSLEEWMTKLLSDID-LSRSVSVASFLELEA  162 (724)
Q Consensus       133 ~gLEkYLqrLLshP~-Ls~S~~L~sFLElEa  162 (724)
                      .+|+.||+.|++.|. +++|+.|+.||....
T Consensus        98 ~~Le~YL~~Ll~lp~~i~~s~~v~~Ff~~~~  128 (149)
T 2l73_A           98 QLLETYSRRLLATAERVARSPTITGFFAPQP  128 (149)
T ss_dssp             HHHHHHHHHHHHHCHHHHHSHHHHHHHSCCG
T ss_pred             HHHHHHHHHHHhCCccccCCHHHHHHhCCCc
Confidence            999999999998775 999999999998764

>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide; phosphoprotein, nucleotide-binding, PIK3C2G, membrane, PX-domain, transferase, ATP-binding; 1.25A {Homo sapiens}

Probab=99.68  E-value=3.3e-17  Score=152.33  Aligned_cols=106  Identities=23%  Similarity=0.246  Sum_probs=89.3

Q ss_pred             CCCCceEEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC
Q 004913           42 PRTGWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR  121 (724)
Q Consensus        42 ~rtGwSy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg  121 (724)
                      .+++..-.++|.+|...       ....|.|+|...+    ...|.|.|||++|..||.+|++.||...+|+||+|++++
T Consensus        20 ~~~~~i~~~~v~~~~k~-------~~~~Yvi~V~~sd----~~~~~~~rry~eF~~LH~qLkk~Fp~~~LP~fP~K~ll~   88 (127)
T 2wwe_A           20 FQSMSIERATILGFSKK-------SSNLYLIQVTHSN----NETSLTEKSFEQFSKLHSQLQKQFASLTLPEFPHWWHLP   88 (127)
T ss_dssp             SCSSSEEEEEEEEEETT-------EEEEEEEEEEETT----SCEEEEEECHHHHHHHHHHHHHHTTTSCCCCCCCTTSHH
T ss_pred             ecCCcEEEEEEEEEEec-------ccEEEEEEEEEeC----CCeEEEEEEHHHHHHHHHHHHHhCccccCCCCCCccccC
Confidence            45666678999999631       3456999996554    369999999999999999999999999999999999776


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhc-ccCCCCCHHHhhccCc
Q 004913          122 MKSRALLEERRCSLEEWMTKLLS-DIDLSRSVSVASFLEL  160 (724)
Q Consensus       122 ~~s~eFLEERR~gLEkYLqrLLs-hP~Ls~S~~L~sFLEl  160 (724)
                      ... .-++ ||++||+||+.|++ +|.|++|+.|.+||..
T Consensus        89 ~t~-~~~e-Rr~~Le~Ylq~Ll~~~~~Ia~Sd~v~~Ff~~  126 (127)
T 2wwe_A           89 FTN-SDHR-RFRDLNHYMEQILNVSHEVTNSDCVLSFFLS  126 (127)
T ss_dssp             HHH-CHHH-HHHHHHHHHHHHTTSCHHHHTSHHHHHHHHC
T ss_pred             cCH-HHHH-HHHHHHHHHHHHhcCCceeecCHHHHHHhCC
Confidence            533 3344 99999999999999 8999999999999964

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=99.56  E-value=8.5e-15  Score=152.61  Aligned_cols=110  Identities=18%  Similarity=0.229  Sum_probs=92.6

Q ss_pred             CceEEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCC--------CCCCCCC
Q 004913           45 GWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKK--------NIPPAPP  116 (724)
Q Consensus        45 GwSy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~--------~LPpLPP  116 (724)
                      +....|+|+++......   ..|++|.|.|....    ...|.|+|||+||..||..|+..||..        .+|+||+
T Consensus        21 ~~~~~v~I~~~~~~~~~---~~~~~Y~i~v~~~~----~~~~~v~RrYsdF~~Lh~~L~~~fp~e~g~~~~~~~lp~lP~   93 (341)
T 2dyb_A           21 DVAISANIADIEEKRGF---TSHFVFVIEVKTKG----GSKYLIYRRYRQFHALQSKLEERFGPDSKSSALAXTLPTLPA   93 (341)
T ss_dssp             TSEEEEEEEEEEEEESS---SEEEEEEEEEEETT----SCEEEEEEEHHHHHHHHHHHHHHTCC---------CCCCCCC
T ss_pred             CCcEEEEECCeEEecCC---CcEEEEEEEEEEcC----CcEEEEEeehHHHHHHHHHHHHHCchhhccccccccccCCCC
Confidence            34568999999764332   35889999996543    368999999999999999999999943        4899999


Q ss_pred             CcccCCCCHHHHHHHHHHHHHHHHHHhcccC-CCCCHHHhhccCcch
Q 004913          117 KGLLRMKSRALLEERRCSLEEWMTKLLSDID-LSRSVSVASFLELEA  162 (724)
Q Consensus       117 Kk~fg~~s~eFLEERR~gLEkYLqrLLshP~-Ls~S~~L~sFLElEa  162 (724)
                      |.++++ ..+|+++|+..|+.||++|+.+|. +++|+.|..||....
T Consensus        94 k~~~~~-~~~~~e~R~~~Le~yl~~ll~lp~~i~~~~~v~~Ff~~~~  139 (341)
T 2dyb_A           94 KVYVGV-KQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSP  139 (341)
T ss_dssp             CCCCSC-HHHHHHHHHHHHHHHHHHHHHSCHHHHTCHHHHHHHSCCH
T ss_pred             ccccCc-cHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcc
Confidence            998876 568999999999999999999987 999999999998654

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=97.64  E-value=0.016  Score=54.50  Aligned_cols=9  Identities=0%  Similarity=0.135  Sum_probs=3.3

Q ss_pred             HHHHHHHHH
Q 004913          476 LRQKSLEME  484 (724)
Q Consensus       476 lr~k~~e~E  484 (724)
                      ++.+..+.+
T Consensus       151 ~~~~~~~~~  159 (284)
T 1c1g_A          151 AKHIAEDAD  159 (284)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333333333

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=97.53  E-value=0.03  Score=52.66  Aligned_cols=52  Identities=10%  Similarity=0.107  Sum_probs=29.8

Q ss_pred             HhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHH
Q 004913          398 LSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQ  449 (724)
Q Consensus       398 l~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~  449 (724)
                      |++=|.+|+..+..+....++|-..|....+-..-+...+..++.++.....
T Consensus         4 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~   55 (284)
T 1c1g_A            4 IKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATED   55 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666666666666666666666655554444455555555555544433

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=97.19  E-value=0.00047  Score=82.71  Aligned_cols=67  Identities=10%  Similarity=0.162  Sum_probs=15.0

Q ss_pred             hhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHh
Q 004913          466 LTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELE  532 (724)
Q Consensus       466 ~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elE  532 (724)
                      +..++=..+++..+..+++..+...+......+..+..+..+.+ +.++++..+++++.+++++.+++
T Consensus       915 l~~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~~~le~el~~L~~eleele~~l~~l~~e~~~le  982 (1184)
T 1i84_S          915 RVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTAD  982 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555566666665555554444444444444444444 44455555555555554444443

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=97.18  E-value=0.00081  Score=80.75  Aligned_cols=19  Identities=21%  Similarity=0.760  Sum_probs=11.5

Q ss_pred             CCCCCCCcCCCCCCCCceE
Q 004913           30 KWNGRDTVWPHDPRTGWSY   48 (724)
Q Consensus        30 ~~~g~dtvwphd~rtGwSy   48 (724)
                      +|++...||-+|+..||.-
T Consensus        27 ~~~~~~~vw~~~~~~~~~~   45 (1184)
T 1i84_S           27 DWSAKKLVWVPSEKHGFEA   45 (1184)
T ss_dssp             HTTCTTEEEECCTTTSSEE
T ss_pred             CcccCCeEEEECCCCCeEE
Confidence            3666666666666666643

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.08  E-value=0.12  Score=62.26  Aligned_cols=60  Identities=13%  Similarity=0.119  Sum_probs=33.8

Q ss_pred             hHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHH
Q 004913          504 TVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQM  563 (724)
Q Consensus       504 ~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~  563 (724)
                      +..+.. +.+|++..+++++.+.++++++|.+..--..-|-..|.+|......|+|++++.
T Consensus       982 ~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A          982 ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444 666777777777777777777766543333344455555555555444444443

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=95.78  E-value=0.49  Score=47.70  Aligned_cols=164  Identities=12%  Similarity=0.127  Sum_probs=95.8

Q ss_pred             hhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhh
Q 004913          425 QEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEEST  504 (724)
Q Consensus       425 qe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~  504 (724)
                      +-...+.-|-..|.+|+.+++..+..-. .++..+-+=+..+.....++++++.+.-.++.++.+-.+.+-+     .. 
T Consensus        22 ~l~~~~~~lp~el~~le~~~~~l~~~~~-~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~-----~a-   94 (256)
T 3na7_A           22 SLEPLIREKRKDLDKALNDKEAKNKAIL-NLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSEREL-----RS-   94 (256)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHH-----HH-
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHH-----HH-
Confidence            3333444455667777777776655443 3333444435557778889999999999999888654322221     22 


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHhhhc---ccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 004913          505 VKDKNVLQELDATKEQLENLSKRYEELEAKS---KADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTH  581 (724)
Q Consensus       505 ~~e~~~~qel~~~~~~~e~l~k~~~elEaks---kad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~  581 (724)
                           +..|++..+.....|.++.-++..+.   ++.++-+-.++..++....++++++...+.+...-...|.++|+  
T Consensus        95 -----L~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~--  167 (256)
T 3na7_A           95 -----LNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKE--  167 (256)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence                 33444444444444444433333332   34555666777777888888888888877776655555555543  


Q ss_pred             hhHHHHHHHHHHHHHHHHHHH
Q 004913          582 NHMKTVREKLLHECRILLNRF  602 (724)
Q Consensus       582 e~~~~ar~kllhec~iL~~rL  602 (724)
                      +.+...-..||..-.-+|.+.
T Consensus       168 ~l~~~i~~~lL~~Yerir~~~  188 (256)
T 3na7_A          168 DLVEKTEPKIYSFYERIRRWA  188 (256)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHHHhC
Confidence            233333446666666666543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=95.50  E-value=0.008  Score=65.57  Aligned_cols=67  Identities=12%  Similarity=0.132  Sum_probs=40.1

Q ss_pred             chhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhh
Q 004913          538 DIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQA  604 (724)
Q Consensus       538 d~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqE  604 (724)
                      +...+.++...++.+..++++++.+.-+++.++|+.+.+.+++.+..+.-..++-.|...|.+.+++
T Consensus       517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~  583 (597)
T 3oja_B          517 RQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR  583 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             hhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3444445555556666666666666666777777777777766666555555555555555555443

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=94.74  E-value=0.29  Score=49.36  Aligned_cols=56  Identities=20%  Similarity=0.074  Sum_probs=34.3

Q ss_pred             hHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHH
Q 004913          399 SRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKET  454 (724)
Q Consensus       399 ~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~  454 (724)
                      ...+..+...+.....+...|-.++....+--+-+...++.+|.+++..+.+-+..
T Consensus        24 ~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~   79 (256)
T 3na7_A           24 EPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASI   79 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555555556666666655666667777777777777776655543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=94.73  E-value=0.4  Score=52.26  Aligned_cols=24  Identities=21%  Similarity=0.187  Sum_probs=14.8

Q ss_pred             EEecccchhhHhHHHHHHHHHHhh
Q 004913          388 LVIPLDQRHKLSRVLLTMERRLVT  411 (724)
Q Consensus       388 ~vlp~d~r~kl~rvl~t~~~rl~~  411 (724)
                      +..+......+.|++..+......
T Consensus       391 ~cc~~~~~~~~~~~~~~l~~~~~~  414 (597)
T 3oja_B          391 LCCKESDKPYLDRLLQYIALTSVV  414 (597)
T ss_dssp             EEEECCSSHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCccchhHHHHHhhHHHHh
Confidence            445556666777777766654443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=94.15  E-value=0.46  Score=50.98  Aligned_cols=103  Identities=14%  Similarity=0.094  Sum_probs=75.4

Q ss_pred             hcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHh
Q 004913          471 WDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLR  550 (724)
Q Consensus       471 wdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR  550 (724)
                      ..++..|++..+++..++.....     ...+.+..+...++.+....++.|.+.++.+....+.+.+.|...+|++.||
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~-----~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (487)
T 3oja_A          374 EQVSNGRRAHAELDGTLQQAVGQ-----IELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLA  448 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTS-----SCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhhHHHhhch-----hhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHH
Confidence            34566777777777776655221     1112333333455677788888888888888888889999999999999999


Q ss_pred             hhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004913          551 SSQIGLKQELSQMLNEKSKTEELLQQER  578 (724)
Q Consensus       551 ~s~~~lk~el~~~~~eK~e~E~~l~~Er  578 (724)
                      ..+..+++++.++.++-.+....++.=.
T Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (487)
T 3oja_A          449 EENARLKKLNGEADLALASANATLQELV  476 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhhhhhhhhhhhhHhcccHHHHHH
Confidence            9999999999998887777766666544

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=93.87  E-value=3.4  Score=55.15  Aligned_cols=43  Identities=14%  Similarity=0.224  Sum_probs=24.3

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhH
Q 004913          542 LVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHM  584 (724)
Q Consensus       542 LvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~  584 (724)
                      +-.+++.|-....+||.+.+.++.||..++.=+..=+.|.++|
T Consensus      2033 ~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA 2075 (3245)
T 3vkg_A         2033 IVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRS 2075 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555666666666666676666666655544444443333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=93.74  E-value=0.35  Score=58.19  Aligned_cols=120  Identities=15%  Similarity=0.193  Sum_probs=51.6

Q ss_pred             hHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHh---hHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhh
Q 004913          428 TVKDYLMTKVKDLEVELETTKQKSKETLQQAILSE---RERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEEST  504 (724)
Q Consensus       428 avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~E---rEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~  504 (724)
                      +.+.-|..||.+|+..|+.....+++-.++.-..|   -..+..|+=+++++.....|.+..           +....+.
T Consensus       921 ~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~-----------~~~v~~L  989 (1080)
T 2dfs_A          921 KLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNA-----------TNRVLSL  989 (1080)
T ss_dssp             ------------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH-----------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH
Confidence            34666778888888777665544443222211111   112334444555555544443321           1233555


Q ss_pred             HHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHH
Q 004913          505 VKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQ  558 (724)
Q Consensus       505 ~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~  558 (724)
                      ..|.+ +.+++..+.++.+.|.+++..+...-...++-|.+|...||.+..+|..
T Consensus       990 ~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A          990 QEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555 6666666666666666666555555556677799999999998888873

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=93.65  E-value=2.6  Score=41.24  Aligned_cols=148  Identities=22%  Similarity=0.225  Sum_probs=82.2

Q ss_pred             HhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHH
Q 004913          434 MTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQ  512 (724)
Q Consensus       434 ~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~q  512 (724)
                      ..||.-||-.|+.+..++|---+.|+=- |--.|.       ++...+..|.++...++--...+..+..+..+.. |.-
T Consensus         5 neKi~~LekQL~E~n~kLk~EsE~~~rl-kK~~tE-------l~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa   76 (168)
T 3o0z_A            5 NEKLSQLQKQLEEANDLLRTESDTAVRL-RKSHTE-------MSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQA   76 (168)
T ss_dssp             -----CTHHHHHHHHHHHHHHHHHHHHH-HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5688889999999888888777777666 666666       4444444444444433322222333333333333 333


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 004913          513 ELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLL  592 (724)
Q Consensus       513 el~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kll  592 (724)
                      +|+.-|...-..++.+.+++.    -+..|--|++.+|.....+.-|..++.      |+|..-||++.-.    --.|.
T Consensus        77 ~L~qEr~~r~q~se~~~elq~----ri~~L~~El~~~k~~~~k~~~e~r~L~------Ekl~~lEKe~a~~----eid~~  142 (168)
T 3o0z_A           77 ILEAERRDRGHDSEMIGDLQA----RITSLQEEVKHLKHNLEKVEGERKEAQ------DMLNHSEKEKNNL----EIDLN  142 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH----HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhh----hHHHH
Confidence            333333222223344444544    456788888888888776666555543      5555556633222    22688


Q ss_pred             HHHHHHHHHHh
Q 004913          593 HECRILLNRFQ  603 (724)
Q Consensus       593 hec~iL~~rLq  603 (724)
                      +|...|++|++
T Consensus       143 ~eLKalQ~~~e  153 (168)
T 3o0z_A          143 YKLKSLQQRLE  153 (168)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999985

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=92.83  E-value=1.4  Score=58.56  Aligned_cols=63  Identities=10%  Similarity=0.082  Sum_probs=47.3

Q ss_pred             HHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 004913          547 KFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANL  609 (724)
Q Consensus       547 KsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~  609 (724)
                      +=||....+++++|..++.+..+.+.-|.+=.++.+.-+.--.+.+.|...|.+.++.|...+
T Consensus      2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl 2072 (3245)
T 3vkg_A         2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKV 2072 (3245)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567777778888888888777777777776666666666666777888888888888887665

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=91.98  E-value=3.3  Score=41.06  Aligned_cols=139  Identities=21%  Similarity=0.240  Sum_probs=81.5

Q ss_pred             hhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHhHHHHHH
Q 004913          436 KVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELD  515 (724)
Q Consensus       436 KvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~qel~  515 (724)
                      ==|.||.|||+....+.....+.    +.+..++.-+.+.+|.|+...-.                +...+.+.|..++.
T Consensus        39 sSrELE~ELE~eL~~~Ek~~~~L----~~~~~~L~~E~e~~k~K~~~~~~----------------e~~~~~~~Lq~el~   98 (189)
T 2v71_A           39 GSRELEAELEAQLVQAEQRNRDL----QADNQRLKYEVEALKEKLEHQYA----------------QSYKQVSVLEDDLS   98 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHH
Confidence            35788888888877666555443    56777888888888888754321                11222223555566


Q ss_pred             HHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 004913          516 ATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHEC  595 (724)
Q Consensus       516 ~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec  595 (724)
                      .+++..+.|++..-++|.+-    --|-+..|....|...+.+-++++|...+=+|.=|. ||   +.....--.|..|+
T Consensus        99 ~l~~~~~~l~~~ireLEq~N----DdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~-EK---e~l~~~~QRLkdE~  170 (189)
T 2v71_A           99 QTRAIKEQLHKYVRELEQAN----DDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD-EK---ESLLVSVQRLKDEA  170 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---HHHHCCC-------
T ss_pred             HHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHHH
Confidence            66666666666666666543    345566677899999999999999999887776664 23   23333344555566


Q ss_pred             HHHHHHH
Q 004913          596 RILLNRF  602 (724)
Q Consensus       596 ~iL~~rL  602 (724)
                      +-|+.-|
T Consensus       171 rDLk~El  177 (189)
T 2v71_A          171 RDLRQEL  177 (189)
T ss_dssp             -------
T ss_pred             HHHHHHH
Confidence            6555433

>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1

Probab=91.56  E-value=9.1  Score=35.92  Aligned_cols=165  Identities=10%  Similarity=0.086  Sum_probs=106.1

Q ss_pred             hhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Q 004913          468 QMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEV  546 (724)
Q Consensus       468 ~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEV  546 (724)
                      +..|+++++-.=+.+++..|.+..-+..  -.+.+....+++ +..+|+..+..|+.+.+....|=...-..        
T Consensus         4 ~F~~~~~~l~~Wl~~~~~~l~~~~~~~d--l~~v~~ll~~h~~~~~ei~~~~~~~~~~~~~g~~L~~~~~~~--------   73 (214)
T 1s35_A            4 AFLQDLDDFQAWLSITQKAVASEDMPES--LPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGEKVIQGQTDP--------   73 (214)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCCCSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSH--------
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCc--------
Confidence            3568888888889999999987643322  223455666666 88888888888888887777665432110        


Q ss_pred             HHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccccCceecccCChhh
Q 004913          547 KFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANLYAEEEDNVILESSSAAD  626 (724)
Q Consensus       547 KsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~~~ee~~~~~~~~ss~~d  626 (724)
                           .-..+++-+...-..+..+......=+++-+.+.. ...|.++|.-+-+-|.+.-.-+..++=      +.++..
T Consensus        74 -----~~~~i~~~l~~L~~~w~~L~~~~~~r~~~L~~~l~-l~~F~~~~~~~~~Wl~~~E~~l~~~~~------g~~~~~  141 (214)
T 1s35_A           74 -----EYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLG-FQEFQKDAKQAEAILSNQEYTLAHLEP------PDSLEA  141 (214)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCC------CSSHHH
T ss_pred             -----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccC------CCCHHH
Confidence                 11344445566666666666666665656555544 567999999998888877654432221      224555


Q ss_pred             HHHhh----------cccchhHHHHHHHHhhhhhhhhh
Q 004913          627 ALALL----------TSSDDQISLLITEAQLLAEDSKA  654 (724)
Q Consensus       627 a~dlL----------~tsDnrI~lLlaEaqll~~d~e~  654 (724)
                      +-.||          ..-.++|.-|.+.++-|+..+..
T Consensus       142 v~~llkkh~~f~~~l~~~~~~i~~l~~~a~~L~~~~h~  179 (214)
T 1s35_A          142 AEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNL  179 (214)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC
Confidence            54443          45567888888888888766533

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=91.42  E-value=0.28  Score=54.95  Aligned_cols=110  Identities=15%  Similarity=0.167  Sum_probs=86.2

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHH-------------HHH-HHhhhhHHHHHHHHHHHHhHHHHH
Q 004913          506 KDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVK-------------EVK-FLRSSQIGLKQELSQMLNEKSKTE  571 (724)
Q Consensus       506 ~e~~~~qel~~~~~~~e~l~k~~~elEakskad~KvLvK-------------EVK-sLR~s~~~lk~el~~~~~eK~e~E  571 (724)
                      +|.++...|..+|.+|++++|-+.+.+.-.+.-+..|.+             ||= .||+.+..||.++..-++.+.-|+
T Consensus        58 qErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQ  137 (562)
T 3ghg_A           58 VNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQ  137 (562)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344488999999999999998888888776655555533             333 699999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhcccc-cccccC
Q 004913          572 ELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANL-YAEEED  615 (724)
Q Consensus       572 ~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~-~~ee~~  615 (724)
                      .+|...+.+..+-..+=.--|+.|+-=|.|--+..|++ .|+...
T Consensus       138 snLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~Q  182 (562)
T 3ghg_A          138 KNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQ  182 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHH
Confidence            99999998888888887788888887777766666665 344433

>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A

Probab=90.84  E-value=1.8  Score=42.32  Aligned_cols=92  Identities=13%  Similarity=0.203  Sum_probs=54.7

Q ss_pred             hhHhHHHHHHHHHHhhhhcchHHHHHHh-hhhhh--HHHHHHhhhhhhHHHHHHHHHh-------hHHHHHHHHHHhhHh
Q 004913          396 HKLSRVLLTMERRLVTAKTDMEDLITRL-NQEMT--VKDYLMTKVKDLEVELETTKQK-------SKETLQQAILSERER  465 (724)
Q Consensus       396 ~kl~rvl~t~~~rl~~aktdmEDLiaRL-nqe~a--vk~fL~tKvkDlE~eLe~t~~~-------~ke~lqQa~l~ErEr  465 (724)
                      .-+-.|...+-..+.+++..+.++..-| +...+  ++..+...+++|..-.+..+.+       -+.++.+.+=.=|+ 
T Consensus        24 s~~e~v~~~~~~y~~~l~~~a~~~~eqL~~s~l~~el~~l~~e~~~~l~~~~~~l~~qL~P~~~e~~~~l~~~~e~lr~-  102 (191)
T 1nfn_A           24 QRWELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQA-  102 (191)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHTTC----------CHHHHHHHHHH-
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH-
Confidence            3567788888999999999999999887 11111  1222333333333322223222       22333333322233 


Q ss_pred             hhhhhhcHHHHHHHHHHHHHHhccc
Q 004913          466 LTQMQWDMEELRQKSLEMEWKLKSK  490 (724)
Q Consensus       466 ~t~mqwdmeelr~k~~e~E~~lks~  490 (724)
                        .|++|||+||.++.-|=..|+..
T Consensus       103 --~l~kdlEelr~kL~P~~eEL~~~  125 (191)
T 1nfn_A          103 --RLGADMEDVCGRLVQYRGEVQAM  125 (191)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             --HHHHHHHHHHHHhhHHHHHHHHH
Confidence              46999999999999988888765

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=88.38  E-value=13  Score=36.32  Aligned_cols=122  Identities=17%  Similarity=0.148  Sum_probs=61.2

Q ss_pred             HhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHH
Q 004913          464 ERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLV  543 (724)
Q Consensus       464 Er~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEakskad~KvLv  543 (724)
                      |+|++       |-+++.|+-.+|+++.+.         .+.-.| ..-|+.....++|..-.++.+.=....+.+..|-
T Consensus         6 eKi~~-------LekQL~E~n~kLk~EsE~---------~~rlkK-~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Le   68 (168)
T 3o0z_A            6 EKLSQ-------LQKQLEEANDLLRTESDT---------AVRLRK-SHTEMSKSISQLESLNRELQERNRILENSKSQTD   68 (168)
T ss_dssp             ----C-------THHHHHHHHHHHHHHHHH---------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-------HHHHHHHHHHHHHHhHHH---------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777       566777777777777221         111111 1224444444445444444444455555666677


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004913          544 KEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRF  602 (724)
Q Consensus       544 KEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rL  602 (724)
                      +||-.|.++..+=+...++.-....+++.=++.=....++.+..-.++.-|-+-|+.||
T Consensus        69 ke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl  127 (168)
T 3o0z_A           69 KDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDML  127 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777766655555444555555555554444333333444444445555555555544

>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}

Probab=85.94  E-value=24  Score=36.34  Aligned_cols=87  Identities=22%  Similarity=0.306  Sum_probs=44.6

Q ss_pred             HHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 004913          453 ETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELE  532 (724)
Q Consensus       453 e~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elE  532 (724)
                      ..|++.+-.=|+++..   .+|+||.++.-+-..+++.-.+.  .|.-..++..-.      ..+++|+|.+++..   +
T Consensus       161 ~ql~~~a~~L~~~l~~---~~eeLr~~L~p~ae~lr~~l~~~--~e~l~~~l~~~~------~~~~qq~e~f~~~~---~  226 (273)
T 3s84_A          161 FQMKKNAEELKARISA---SAEELRQRLAPLAEDVRGNLRGN--TEGLQKSLAELG------GHLDQQVEEFRRRV---E  226 (273)
T ss_dssp             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHTSSSC--HHHHHHHHHHHH------HHHHHHHHHHHHHH---T
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhHHHHH------HHHHHHHHHHHHHh---H
Confidence            3444444444555554   68899999988888887752221  111111111111      22334444443332   2


Q ss_pred             hhcccchhHHHHHHHHHhhhh
Q 004913          533 AKSKADIKVLVKEVKFLRSSQ  553 (724)
Q Consensus       533 akskad~KvLvKEVKsLR~s~  553 (724)
                      -.+.+=.+-|+..|+-||...
T Consensus       227 p~~e~~~~~l~~~~e~l~~~l  247 (273)
T 3s84_A          227 PYGENFNKALVQQMEQLRQKL  247 (273)
T ss_dssp             THHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHh
Confidence            222222566777777777665

>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}

Probab=83.08  E-value=45  Score=34.27  Aligned_cols=25  Identities=20%  Similarity=0.222  Sum_probs=16.7

Q ss_pred             hhhhhhhcHHHHHHHHHHHHHHhcc
Q 004913          465 RLTQMQWDMEELRQKSLEMEWKLKS  489 (724)
Q Consensus       465 r~t~mqwdmeelr~k~~e~E~~lks  489 (724)
                      --+.++|+||+||+++.-|=..|+.
T Consensus        60 l~~~~~~~~eelr~kL~p~~~el~~   84 (273)
T 3s84_A           60 LRTQVNTQAEQLRRQLTPYAQRMER   84 (273)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            3356778888888887766555543

>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}

Probab=82.88  E-value=29  Score=32.97  Aligned_cols=123  Identities=15%  Similarity=0.139  Sum_probs=65.2

Q ss_pred             HHHhhhhcchHHHHHHhhhh-hhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHH
Q 004913          407 RRLVTAKTDMEDLITRLNQE-MTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEW  485 (724)
Q Consensus       407 ~rl~~aktdmEDLiaRLnqe-~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~  485 (724)
                      .++..+...-+.|++.-.-. ..|++.| ..|.+...+|...-..-+..|+|+.-     +-++..|++++..=+.+.|.
T Consensus        67 ~~~~~~~~~G~~Ll~~~~~~~~~i~~~l-~~L~~~w~~L~~~~~~R~~~L~q~l~-----l~~F~~d~~~~~~WL~~~e~  140 (218)
T 3fb2_A           67 GTFQAFEQFGQQLLAHGHYASPEIKQKL-DILDQERADLEKAWVQRRMMLDQCLE-----LQLFHRDCEQAENWMAAREA  140 (218)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence            45555555555666553322 2233322 34555566666666677777887752     34556688888888888888


Q ss_pred             HhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 004913          486 KLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKA  537 (724)
Q Consensus       486 ~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakska  537 (724)
                      .|.+..  -+..-...+.+..+.+ +..+|.+..+.+..|....+.|=...-.
T Consensus       141 ~L~~~~--~g~s~~~ve~ll~~h~~f~~~l~~~~~~v~~l~~~~~~L~~~~h~  191 (218)
T 3fb2_A          141 FLNTED--KGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAFADQLIAAGHY  191 (218)
T ss_dssp             CC---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             hhcCCC--CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC
Confidence            887752  2222233455666666 7777877777777777766666544433

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=82.21  E-value=9.2  Score=33.87  Aligned_cols=67  Identities=16%  Similarity=0.144  Sum_probs=37.2

Q ss_pred             hhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 004913          539 IKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQAC  605 (724)
Q Consensus       539 ~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC  605 (724)
                      ++-|-+|++.|......|.+||...-+++..+..-|..-+...+.-..--.++.+|...++-++-+|
T Consensus         6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~   72 (96)
T 3q8t_A            6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLEL   72 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555556666666666666666555555554444444444455555555555555544

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1

Probab=82.20  E-value=37  Score=38.90  Aligned_cols=193  Identities=8%  Similarity=0.013  Sum_probs=100.1

Q ss_pred             HHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHh---hHHHHHHHHHHhhHh----hhhhhhcHH
Q 004913          402 LLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQK---SKETLQQAILSERER----LTQMQWDME  474 (724)
Q Consensus       402 l~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~---~ke~lqQa~l~ErEr----~t~mqwdme  474 (724)
                      |...+.|+.+....-+.|++- +..  -.+.+..++.+|...-+..+..   -+..|++|... .+.    +-++.|+++
T Consensus       420 l~~~~~~v~~l~~~~~~L~~~-~~~--~~~~I~~~~~~l~~~W~~L~~~~~~R~~~L~~~l~~-~q~~~~l~~~f~~~a~  495 (863)
T 1sjj_A          420 LAAHQDRVEQIAAIAQELNEL-DYY--DSPSVNARCQKICDQWDNLGALTQKRREALERTEKL-LETIDQLYLEYAKRAA  495 (863)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHT-CCT--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhC-Ccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            333444555544444444421 111  1245556666666544444433   33445555433 211    225678888


Q ss_pred             HHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhh---cc-------cchhHHH
Q 004913          475 ELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAK---SK-------ADIKVLV  543 (724)
Q Consensus       475 elr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEak---sk-------ad~KvLv  543 (724)
                      ++..=+.+.|..|.+..-+  ......+...++++ +..+|...+..++.+..-..+++.-   ..       ...+.. 
T Consensus       496 ~~~~Wl~~~e~~l~~~~~g--~dl~~ve~ll~kh~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-  572 (863)
T 1sjj_A          496 PFNNWMEGAMEDLQDTFIV--HTIEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTIT-  572 (863)
T ss_dssp             TTHHHHHHHHHHHHCCCCC--SSSGGGHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCSCCSSSSCC-
T ss_pred             HHHHHHHHHHHHhcchHhh--ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCcCC-
Confidence            8888899999999886443  33333566777777 7778877776666655444444331   11       111111 


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 004913          544 KEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANLY  610 (724)
Q Consensus       544 KEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~~  610 (724)
                        +..|+....+|.+   .+..-+    .-|+++.++.+....-+..|..+|..+..-|+|.--.+.
T Consensus       573 --~~~L~~rw~~L~~---~~~~R~----~~L~~~l~~~~~~~~l~~~F~~~a~~~~~Wi~e~e~~l~  630 (863)
T 1sjj_A          573 --PQEINGKWEHVRQ---LVPRRD----QALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEIG  630 (863)
T ss_dssp             --HHHHHHHHHHHHH---HHHHHH----HHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             --HHHHHHHHHHHHH---HHHHHH----HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              2222222222111   111122    223333333333445567788999999999988876664

>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A

Probab=81.43  E-value=36  Score=33.81  Aligned_cols=67  Identities=16%  Similarity=0.078  Sum_probs=50.5

Q ss_pred             hhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhh
Q 004913          466 LTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAK  534 (724)
Q Consensus       466 ~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEak  534 (724)
                      +-|.++|+.|+..=+.++|..|.+..-+  .-..+.+....+++ +..++.+.+..++.|.+....|=..
T Consensus         6 ~qqf~~~~~el~~Wl~e~~~~l~~~~~g--~d~~~~~~ll~kh~~~~~el~~~~~~v~~l~~~~~~L~~~   73 (326)
T 3kbt_A            6 AQQYYLDADEAEAWIGEQELYVISDEIP--KDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRAQGLLSA   73 (326)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSCCCCC--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCccC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            3467899999999999999999875433  33444466666766 8888988888888888877776543

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=80.21  E-value=20  Score=32.88  Aligned_cols=35  Identities=20%  Similarity=0.352  Sum_probs=26.4

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 004913          571 EELLQQERQTHNHMKTVREKLLHECRILLNRFQAC  605 (724)
Q Consensus       571 E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC  605 (724)
                      +.-|..|.++...-.+..+|+-.+|.-|...|.+-
T Consensus        89 ~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~  123 (129)
T 2fxo_A           89 NKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL  123 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445566666667788899999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	724
d1xtea_	116	d.189.1.1 (A:) Serine/threonine-protein kinase Sgk	5e-15
d1ocsa_	132	d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast	1e-13
d1kmda_	117	d.189.1.1 (A:) Vam7p {Baker's yeast (Saccharomyces	1e-11
d1h6ha_	143	d.189.1.1 (A:) p40phox NADPH oxidase {Human (Homo	5e-10
d1kq6a_	140	d.189.1.1 (A:) p47phox NADPH oxidase {Human (Homo	2e-09

>d1xtea_ d.189.1.1 (A:) Serine/threonine-protein kinase Sgk3, Cisk {Mouse (Mus musculus) [TaxId: 10090]} Length = 116

class: Alpha and beta proteins (a+b)
fold: PX domain
superfamily: PX domain
family: PX domain
domain: Serine/threonine-protein kinase Sgk3, Cisk
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.7 bits (170), Expect = 5e-15
 Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 7/112 (6%)

Query: 50  VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKK 109
           V+IPS               Y+V V +   E       V RR+  F KL+  LKK FP  
Sbjct: 7   VSIPSSDE--HREKKKRFTVYKVLVSVGRSEWF-----VFRRYAEFDKLYNSLKKQFPAM 59

Query: 110 NIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161
            +     +          +++RR  L E++  L+   +L     V +FL+++
Sbjct: 60  ALKIPAKRIFGDNFDPDFIKQRRAGLNEFIQNLVRYPELYNHPDVRAFLQMD 111

>d1ocsa_ d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 132

class: Alpha and beta proteins (a+b)
fold: PX domain
superfamily: PX domain
family: PX domain
domain: Sorting nexin grd19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.9 bits (160), Expect = 1e-13
 Identities = 26/119 (21%), Positives = 36/119 (30%), Gaps = 7/119 (5%)

Query: 50  VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKK 109
           V  P   +            Y +      P        V RR+++F      L K     
Sbjct: 11  VHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISML 70

Query: 110 NIPPAPPKGLLRMK------SRALLEERRCSLEEWMTKLLSDIDLSR-SVSVASFLELE 161
           N P      L          S  ++EERR  L  WM  +     L   S  +  F+E E
Sbjct: 71  NHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAE 129

>d1kmda_ d.189.1.1 (A:) Vam7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 117

class: Alpha and beta proteins (a+b)
fold: PX domain
superfamily: PX domain
family: PX domain
domain: Vam7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.0 bits (145), Expect = 1e-11
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 10/89 (11%)

Query: 83  TTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMK-------SRALLEERRCSL 135
           T  + + +R++ F KL T L++          P K  +  +          +++ERR  L
Sbjct: 26  TPNKRLYKRYSEFWKLKTRLERDVGSTIPYDFPEKPGVLDRRWQRRYDDPEMIDERRIGL 85

Query: 136 EEWMTKLLS---DIDLSRSVSVASFLELE 161
           E ++ +L +   D     +     FL+L 
Sbjct: 86  ERFLNELYNDRFDSRWRDTKIAQDFLQLS 114

>d1h6ha_ d.189.1.1 (A:) p40phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]} Length = 143

class: Alpha and beta proteins (a+b)
fold: PX domain
superfamily: PX domain
family: PX domain
domain: p40phox NADPH oxidase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (134), Expect = 5e-10
 Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 12/109 (11%)

Query: 60  KSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFP-------KKNIP 112
           + R       + ++V  ++  G      + RR+  F  L + L++ F             
Sbjct: 30  EKRGFTSHFVFVIEV--KTKGGSKYL--IYRRYRQFHALQSKLEERFGPDSKSSALACTL 85

Query: 113 PAPPKGLLRMKSRALLEERRCSLEEWMTKLLS-DIDLSRSVSVASFLEL 160
           P  P  +     + + E R  +L  +M  LLS  + +     V  F   
Sbjct: 86  PTLPAKVYVGVKQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQ 134

>d1kq6a_ d.189.1.1 (A:) p47phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]} Length = 140

class: Alpha and beta proteins (a+b)
fold: PX domain
superfamily: PX domain
family: PX domain
domain: p47phox NADPH oxidase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (130), Expect = 2e-09
 Identities = 22/109 (20%), Positives = 35/109 (32%), Gaps = 12/109 (11%)

Query: 60  KSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPK-- 117
           K         Y   V  Q          V RRF    +    LK+ FP +     P    
Sbjct: 15  KRFVPSQHYVYMFLVKWQDLSEKV----VYRRFTEIYEFHKTLKEMFPIEAGAINPENRI 70

Query: 118 -----GLLRMKSRALLEERRCSLEEWMTKLLS-DIDLSRSVSVASFLEL 160
                       +   E R+ +L E+ + L+S    +SR   +  F ++
Sbjct: 71  IPHLPAPKWFDGQRAAENRQGTLTEYCSTLMSLPTKISRCPHLLDFFKV 119

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	724
d1xtea_	116	Serine/threonine-protein kinase Sgk3, Cisk {Mouse	99.86
d1ocsa_	132	Sorting nexin grd19 {Baker's yeast (Saccharomyces	99.86
d1kmda_	117	Vam7p {Baker's yeast (Saccharomyces cerevisiae) [T	99.82
d1h6ha_	143	p40phox NADPH oxidase {Human (Homo sapiens) [TaxId	99.77
d1kq6a_	140	p47phox NADPH oxidase {Human (Homo sapiens) [TaxId	99.76
d1seta1	110	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	86.36
d1u5pa1	110	Spectrin alpha chain {Chicken (Gallus gallus) [Tax	83.0

>d1xtea_ d.189.1.1 (A:) Serine/threonine-protein kinase Sgk3, Cisk {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: PX domain
superfamily: PX domain
family: PX domain
domain: Serine/threonine-protein kinase Sgk3, Cisk
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=1.5e-22  Score=178.57  Aligned_cols=108  Identities=25%  Similarity=0.402  Sum_probs=96.1

Q ss_pred             EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHH
Q 004913           49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALL  128 (724)
Q Consensus        49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eFL  128 (724)
                      .|+||++....+  ..++|++|.|.|...     ...|.|.||||||.+||..|++.||...+|++|+|.+++..++++|
T Consensus         6 ~i~I~~~~~~~~--~~k~~~~Y~I~v~~~-----~~~~~V~rRYsdF~~L~~~L~~~~~~~~~p~~~~~~~~~~~~~~~l   78 (116)
T d1xtea_           6 SVSIPSSDEHRE--KKKRFTVYKVLVSVG-----RSEWFVFRRYAEFDKLYNSLKKQFPAMALKIPAKRIFGDNFDPDFI   78 (116)
T ss_dssp             EEEEEEEEEEEE--TTEEEEEEEEEEEET-----TEEEEEEEEHHHHHHHHHHHHHHCGGGCCCCCCSCCSSCTTCHHHH
T ss_pred             cEEeCCceEecc--CCCCEEEEEEEEEEC-----CcEEEEEeeHHHHHHHHHHHHHHCCCCCCCCCCcccccCccCHHHH
Confidence            689999887544  367899999999643     3689999999999999999999999988888777777788899999


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCHHHhhccCcchh
Q 004913          129 EERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAA  163 (724)
Q Consensus       129 EERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa~  163 (724)
                      ++||.+|+.||+.|+++|.+++|..|..||+++..
T Consensus        79 ~~Rr~~L~~yL~~l~~~~~l~~~~~~~~FL~~d~~  113 (116)
T d1xtea_          79 KQRRAGLNEFIQNLVRYPELYNHPDVRAFLQMDSP  113 (116)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHTSHHHHHHTTTTCG
T ss_pred             HHHHHHHHHHHHHHHhCHhhhcChHHHhhcCCCCC
Confidence            99999999999999999999999999999998754

>d1ocsa_ d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: PX domain
superfamily: PX domain
family: PX domain
domain: Sorting nexin grd19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=2.7e-22  Score=180.84  Aligned_cols=116  Identities=25%  Similarity=0.261  Sum_probs=95.3

Q ss_pred             EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCC-----CCCCCCCCCCccc-C
Q 004913           48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFP-----KKNIPPAPPKGLL-R  121 (724)
Q Consensus        48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP-----~~~LPpLPPKk~f-g  121 (724)
                      ..|+.|.........+.++||+|.|.|.+..+.+....|.|.||||||.+||..|++.||     ...+|++|+|+.+ +
T Consensus         9 i~V~dP~~~~~~~~~~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~~~~~p~~p~~~~~~~   88 (132)
T d1ocsa_           9 IEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLSN   88 (132)
T ss_dssp             EEEEEEEEECCCSTTSCCCEEEEEEEEEECCTTCSCSEEEEEEEHHHHHHHHHHHHHHHHHTTCTTCCCCCCTTCCCSSC
T ss_pred             EEEcCCcEeecCCCCCccCeEEEEEEEEecCCCCCCceEEEEeeHHHHHHHHHHHHHhcccccCcccccCCCcccccccc
Confidence            456666654433334678999999999877777667899999999999999999998865     4567788888755 4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcccCCCC-CHHHhhccCcchh
Q 004913          122 MKSRALLEERRCSLEEWMTKLLSDIDLSR-SVSVASFLELEAA  163 (724)
Q Consensus       122 ~~s~eFLEERR~gLEkYLqrLLshP~Ls~-S~~L~sFLElEa~  163 (724)
                      .++++||++||.+||.||+.|+.||.|++ ++.|+.||+.+.+
T Consensus        89 ~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~~s~~l~~FLe~~~~  131 (132)
T d1ocsa_          89 RFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAEKF  131 (132)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHCSSC
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHcCHHHHhCCHHHHhcCCcccc
Confidence            67899999999999999999999999976 6889999987753

>d1kmda_ d.189.1.1 (A:) Vam7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: PX domain
superfamily: PX domain
family: PX domain
domain: Vam7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=4.6e-21  Score=171.40  Aligned_cols=100  Identities=22%  Similarity=0.332  Sum_probs=88.1

Q ss_pred             EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc-------
Q 004913           48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL-------  120 (724)
Q Consensus        48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~f-------  120 (724)
                      +.|.|+++.+.      +.||+|.|.+         ..|.|+||||||.+||..|.+.||...+|++|+|.++       
T Consensus         6 ~~i~i~d~~i~------~~~~~Y~I~~---------~~~~V~RRYsdF~~L~~~L~~~~~~~~~p~lP~K~~~~~~~~~~   70 (117)
T d1kmda_           6 LRIKVDDVKIN------PKYVLYGVST---------PNKRLYKRYSEFWKLKTRLERDVGSTIPYDFPEKPGVLDRRWQR   70 (117)
T ss_dssp             CCCEEEEEEEC------SSCEEEEEEC---------SSCCEEECHHHHHHHHHHHHHHHCSCCCCCCCCCCCSSCSTTCC
T ss_pred             EEEEeCCCEEe------cCEEEEEEEE---------CCEEEEehHHHHHHHHHHHHHHCCCCcCCCCCcccccccccccc
Confidence            46888888863      4599999976         4799999999999999999999999999999999754       


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcccCC---CCCHHHhhccCcch
Q 004913          121 RMKSRALLEERRCSLEEWMTKLLSDIDL---SRSVSVASFLELEA  162 (724)
Q Consensus       121 g~~s~eFLEERR~gLEkYLqrLLshP~L---s~S~~L~sFLElEa  162 (724)
                      +.++++|||+|+.+||.||+.|++||.+   ++|+.|.+||+++.
T Consensus        71 ~~~~~~~ie~R~~~Le~yL~~ll~~p~~~~~~~s~~l~~FL~~s~  115 (117)
T d1kmda_          71 RYDDPEMIDERRIGLERFLNELYNDRFDSRWRDTKIAQDFLQLSK  115 (117)
T ss_dssp             CTTCHHHHHHHHTTHHHHHHHHHCCSSCCHHHHSHHHHHHTTCCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHcCcchhhhcCCHHHHHHhCCCC
Confidence            4568999999999999999999999974   57999999998864

>d1h6ha_ d.189.1.1 (A:) p40phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: PX domain
superfamily: PX domain
family: PX domain
domain: p40phox NADPH oxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=5.4e-19  Score=161.29  Aligned_cols=108  Identities=19%  Similarity=0.224  Sum_probs=89.0

Q ss_pred             EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC--------CCCCCCCCCcc
Q 004913           48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK--------KNIPPAPPKGL  119 (724)
Q Consensus        48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~--------~~LPpLPPKk~  119 (724)
                      ..++|......   .+..+|++|.|+|...+    +..|.|+||||||.+||..|++.||.        ..+|+||+|++
T Consensus        21 v~~~i~~~e~~---~~~~~y~vY~I~v~~~~----~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~~~~~~~lP~lP~k~~   93 (143)
T d1h6ha_          21 ISANIADIEEK---RGFTSHFVFVIEVKTKG----GSKYLIYRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPAKVY   93 (143)
T ss_dssp             EEEEEEEEEEE---CSSSCEEEEEEEEEETT----SCEEEEEEEHHHHHHHHHHHHHHHSTTCSCGGGCCCCCCCCCCCC
T ss_pred             EEEEEeceeEe---cCCCCeEEEEEEEEEcC----CCEEEEEEeHHHHHHHHHHHHHHCchhhccccccccccCCCcccc
Confidence            57788777642   24567999999996533    35899999999999999999999973        35888888876


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHhccc-CCCCCHHHhhccCcchh
Q 004913          120 LRMKSRALLEERRCSLEEWMTKLLSDI-DLSRSVSVASFLELEAA  163 (724)
Q Consensus       120 fg~~s~eFLEERR~gLEkYLqrLLshP-~Ls~S~~L~sFLElEa~  163 (724)
                      ++ ++..||++||.+||.||+.|+..| .+++|+.|..||+....
T Consensus        94 ~~-~~~~~ie~Rr~~Le~yL~~Ll~~~~~i~~s~~v~~Fl~~~~~  137 (143)
T d1h6ha_          94 VG-VKQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSPY  137 (143)
T ss_dssp             SS-CHHHHHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCCHH
T ss_pred             CC-CChHHHHHHHHHHHHHHHHHHhCChhhccCHHHHHHhCCCCc
Confidence            54 467999999999999999998765 79999999999987753

>d1kq6a_ d.189.1.1 (A:) p47phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: PX domain
superfamily: PX domain
family: PX domain
domain: p47phox NADPH oxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.4e-18  Score=157.25  Aligned_cols=111  Identities=19%  Similarity=0.300  Sum_probs=91.3

Q ss_pred             CceEEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc----
Q 004913           45 GWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL----  120 (724)
Q Consensus        45 GwSy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~f----  120 (724)
                      +....|+|+++.....   .+.|++|.|.|...+    +..|.|+||||||.+||..|+..||...+|++|+|..+    
T Consensus         3 ~~i~~i~i~~~e~~~~---~~k~~vY~I~v~~~d----~~~~~V~RRYsdF~~Lh~~L~~~fp~~~~~~~p~k~~~~~~~   75 (140)
T d1kq6a_           3 TFIRHIALLGFEKRFV---PSQHYVYMFLVKWQD----LSEKVVYRRFTEIYEFHKTLKEMFPIEAGAINPENRIIPHLP   75 (140)
T ss_dssp             SCEEEEEEEEEEEECS---SSCEEEEEEEEEETT----CCEEEEEECHHHHHHHHHHHHHHCTTTTTSSCGGGCCSCCCC
T ss_pred             ceEEEEEEeeeEEecC---CCCeEEEEEEEEEcC----CCEEEEEEEHHHHHHHHHHHHHHCCcccCCCCchhhcccccc
Confidence            3456899999975322   245888999996533    35899999999999999999999999888888877432    


Q ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHhccc-CCCCCHHHhhccCcch
Q 004913          121 ---RMKSRALLEERRCSLEEWMTKLLSDI-DLSRSVSVASFLELEA  162 (724)
Q Consensus       121 ---g~~s~eFLEERR~gLEkYLqrLLshP-~Ls~S~~L~sFLElEa  162 (724)
                         +..+..|+++||.+||.||+.|+.+| .+++|+.|..||+...
T Consensus        76 ~~~~~~~~~~ie~R~~~Le~yL~~Ll~~p~~l~~s~~v~~Fl~~~~  121 (140)
T d1kq6a_          76 APKWFDGQRAAENRQGTLTEYCSTLMSLPTKISRCPHLLDFFKVRP  121 (140)
T ss_dssp             CCCCCCSHHHHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCCH
T ss_pred             ccccCCCHHHHHHHHHHHHHHHHHHHhCChhhhCCHHHHHHhCCCc
Confidence               24568999999999999999999877 5999999999998653

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Seryl-tRNA synthetase (SerRS)
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=86.36  E-value=2.2  Score=35.66  Aligned_cols=89  Identities=13%  Similarity=0.167  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhh
Q 004913          473 MEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRS  551 (724)
Q Consensus       473 meelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~  551 (724)
                      +--+|........+|+...-. ... ...-.+..+.. +.++++..+.+-..++++...   ..+.++.-|.+|+|.|+.
T Consensus         4 ik~ir~n~e~v~~~l~~R~~~-~~l-d~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k---~~~~~~~~l~~~~k~lk~   78 (110)
T d1seta1           4 LKRLRQEPEVFHRAIREKGVA-LDL-EALLALDREVQELKKRLQEVQTERNQVAKRVPK---APPEEKEALIARGKALGE   78 (110)
T ss_dssp             HHHHHHCHHHHHHHHHHTTCC-CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG---CCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHcCCc-cCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhccchHHHHHHHHHHHH
Confidence            344565555556666555211 111 22233444444 666666666666666666542   223456667888888888


Q ss_pred             hhHHHHHHHHHHHHh
Q 004913          552 SQIGLKQELSQMLNE  566 (724)
Q Consensus       552 s~~~lk~el~~~~~e  566 (724)
                      ...+|.+++...-.+
T Consensus        79 ~i~~le~~~~~~~~~   93 (110)
T d1seta1          79 EAKRLEEALREKEAR   93 (110)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888777777665444

>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: Spectrin alpha chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=83.00  E-value=9.5  Score=30.22  Aligned_cols=70  Identities=17%  Similarity=0.231  Sum_probs=52.6

Q ss_pred             hhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccch
Q 004913          468 QMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADI  539 (724)
Q Consensus       468 ~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~  539 (724)
                      ++..+++++..=+.++|..+.+..-+.  .....+....+++ +..++...+..++.+.+....|-...-.+.
T Consensus         6 ~F~~~~~el~~Wl~e~e~~l~~~~~g~--d~~~~~~~~~~h~~~~~ei~~~~~~i~~l~~~~~~L~~~~~~~~   76 (110)
T d1u5pa1           6 NFNTGIKDFDFWLSEVEALLASEDYGK--DLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDT   76 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCCCCS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCT
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCC--CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCcH
Confidence            456789999999999999998764443  3344466666666 889999999999999999888865444443