Citrus Sinensis ID: 004923

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720---

MALSAFSFPTYVSKATNSGPHKSSPVTSHFFGAALFSHFSHKLDNHQIQLKKRPNGVCASLSERGEYHSQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDPATGKQFKSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALEIMSFKS

ccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccEEEEcccccccHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHccccccccEEEEEcccccccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccccHHcccccEEccccccccHHHHHHHHHHHHcccccccEEEEEEcccccccHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccEEEEEccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccEEEEccHHHHHHHcHHHHHHHcccccEEEEEEccccccccccccccHHHHHHcccccccEEEccccHHHHHHHHHHHHHcccccEEEEccccccccccccccccccccccccEEEEEEcccEEEEEccccHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHcccEEEEcccccccHHHHHHHHHHHcccccccccEEEccccccccccccHHHHHHHHcccHHHHHHHHHHHHcccHHHHccccccc

ccccccccccHccccccccccccccccccHHHHHHHHHccccccccccccEEccccEEccccccccccccccccccHcccccHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEHHHHHHccccccEEEEEccccccccHHccccHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHHcccccccEEEEEcccccEEcccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHcccEEEcccccccHHHHHHHHHHHHHccccccEEEEEEEccccccccHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccEEHEHHHHHHHHHHHEEHHHHHHcccEEEEEEccccccccccccccHHHHHHHHccccEEEEccccHHHHHHHHHHHHHcccccEEEEccccccccEEccccccccEEEccccEEEEcccEEEEEEccHHHHHHHHHHHHHHHccccEEEEEcEEcccccHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHccccccccEEEEccccccEcccccHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHcccc

malsafsfptyvskatnsgphksspvtshffGAALFSHFSHKLDNhqiqlkkrpngvcaslsergeyhsqrpptplldtinypihmknLSIRELKQLADELRADVIFNVsktgghlgssLGVIELTVALHYVfnapkdrilwdvghqtyphkiltgrrdkmhtmrqtdglsgftkrseseydcfgtghsstsisAGLGMavgrdlkgrkNNVVAVIGDGAMTAGQAYEAMnnagyldsdMIVILndnkqvslptatldgpippvgALSSALSRLQSNRPLRELREVAKGVtkqiggpmheLAAKVDEYARgmisgsgstLFEELGlyyigpvdghnVDDLVAILEEVkntkttgpVLIHVVTekgrgypyaekaadkyhgvakfdpatgkqfkssartQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRrfptrcfdvgiAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDqvvhdvdlqklpvrfamdraglvgadgpthcgsfdvtfmaclpnmvvmapsdeAELFHMVATAAaiddrpscfryprgngigvelppgnkgiplevgkgriliEGERVALLGYGTAVQSCLAASALLESnglrltvadarfckpLDHALIRSLAKSHEVLITveegsiggfgSHVVQFLAQdglldgtvkwrplvlpdryidhgspadqlaqagltpshIAATVFNILGQTREALEIMSFKS

MALSAFSFPTYVSKATNSGPHKSSPVTSHFFGAALFSHFSHKLDNHQIQLKKRPNGVCASLSERgeyhsqrpptplldTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKiltgrrdkmhtmrqtdglsgftkrsESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAkgvtkqiggpmhELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEvkntkttgpvlIHVVTEKGRGYPYAEKAADKYHGVAKFDpatgkqfkssarTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGngigvelppgnkgiPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALEIMSFKS

***************************SHFFGAALFSHFSHKLDNHQIQL*************************LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTG*************************DCFGT******ISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTAT*************************************IGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDP***********TQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREAL*******

*********************************************************************QRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFD*****************TYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALEIMSFK*

MALSAFSFPTYVSK*********SPVTSHFFGAALFSHFSHKLDNHQIQLKKRPNGVCASLSERGEYHSQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDPATG********TQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALEIMSFKS

***************************SHFFGAALFSHFSH*******QLKKRPNGVCASLSERGEYHSQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDPATGKQFKSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALEIMSFKS

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		723	2.2.26 [Sep-21-2011]
O78328		719	Probable 1-deoxy-D-xylulo	N/A	no	0.990	0.995	0.865	0.0
Q38854		717	1-deoxy-D-xylulose-5-phos	yes	no	0.990	0.998	0.831	0.0
O22567		720	1-deoxy-D-xylulose-5-phos	yes	no	0.910	0.913	0.887	0.0
Q6YU51		713	Probable 1-deoxy-D-xylulo	no	no	0.912	0.925	0.75	0.0
B6IRB5		642	1-deoxy-D-xylulose-5-phos	yes	no	0.863	0.971	0.626	0.0
B3QFY7		641	1-deoxy-D-xylulose-5-phos	yes	no	0.864	0.975	0.609	0.0
Q6NB76		641	1-deoxy-D-xylulose-5-phos	yes	no	0.864	0.975	0.609	0.0
Q11KE0		650	1-deoxy-D-xylulose-5-phos	yes	no	0.876	0.975	0.610	0.0
A6WWC4		638	1-deoxy-D-xylulose-5-phos	yes	no	0.871	0.987	0.631	0.0
Q21A74		641	1-deoxy-D-xylulose-5-phos	yes	no	0.871	0.982	0.604	0.0

>sp\|O78328\|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum GN=TKT2 PE=2 SV=1	Back alignment and function desciption

 Score = 1288 bits (3332), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 626/723 (86%), Positives = 681/723 (94%), Gaps = 7/723 (0%)

Query: 1   MALSAFSFPTYVSK--ATNSGPHKSSPVTSHFF-GAALFSHFSHKLDNHQIQLKKRPNGV 57
           MAL A++FP  +++  A  S   K +P+ S +  G  L   F  KL     Q+KKR   V
Sbjct: 1   MALCAYAFPGILNRTVAVASDASKPTPLFSEWIHGTDLQFQFHQKL----TQVKKRSRTV 56

Query: 58  CASLSERGEYHSQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLG 117
            ASLSE GEY++QRPPTP++DTINYPIHMKNLS++ELKQLADELR+D IFNVSKTGGHLG
Sbjct: 57  QASLSESGEYYTQRPPTPIVDTINYPIHMKNLSLKELKQLADELRSDTIFNVSKTGGHLG 116

Query: 118 SSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGRRDKMHTMRQTDGLSGFTKRS 177
           SSLGV+ELTVALHYVFNAP+DRILWDVGHQ+YPHKILTGRR+KM T+RQT+GL+GFTKRS
Sbjct: 117 SSLGVVELTVALHYVFNAPQDRILWDVGHQSYPHKILTGRREKMSTLRQTNGLAGFTKRS 176

Query: 178 ESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLD 237
           ESEYDCFGTGHSST+ISAGLGMAVGRDLKGR NNV+AVIGDGAMTAGQAYEAMNNAGYLD
Sbjct: 177 ESEYDCFGTGHSSTTISAGLGMAVGRDLKGRNNNVIAVIGDGAMTAGQAYEAMNNAGYLD 236

Query: 238 SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGP 297
           SDMIVILNDN+QVSLPTATLDGP+PPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGP
Sbjct: 237 SDMIVILNDNRQVSLPTATLDGPVPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGP 296

Query: 298 MHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVL 357
           MHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHN+DDL++IL+EV++TKTTGPVL
Sbjct: 297 MHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLISILKEVRSTKTTGPVL 356

Query: 358 IHVVTEKGRGYPYAEKAADKYHGVAKFDPATGKQFKSSARTQSYTTYFAEALIAEAEVDK 417
           IHVVTEKGRGYPYAE+AADKYHGVAKFDPATGKQFK SA+TQSYTTYFAEALIAEAE DK
Sbjct: 357 IHVVTEKGRGYPYAERAADKYHGVAKFDPATGKQFKGSAKTQSYTTYFAEALIAEAEADK 416

Query: 418 DVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQ 477
           D+VAIHAAMGGGTG+NLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQ
Sbjct: 417 DIVAIHAAMGGGTGMNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQ 476

Query: 478 RAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAEL 537
           RAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCG+FDVTFMACLPNMVVMAPSDEAEL
Sbjct: 477 RAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMACLPNMVVMAPSDEAEL 536

Query: 538 FHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTA 597
           FH+VATAAAIDDRPSCFRYPRGNGIGVELP GNKGIPLEVGKGRIL+EGERVALLGYG+A
Sbjct: 537 FHIVATAAAIDDRPSCFRYPRGNGIGVELPAGNKGIPLEVGKGRILVEGERVALLGYGSA 596

Query: 598 VQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVV 657
           VQ+CLAA+++LES GL++TVADARFCKPLD ALIRSLAKSHEVL+TVE+GSIGGFGSHVV
Sbjct: 597 VQNCLAAASVLESRGLQVTVADARFCKPLDRALIRSLAKSHEVLVTVEKGSIGGFGSHVV 656

Query: 658 QFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALE 717
           QF+A DGLLDG +KWRP+VLPDRYIDHGSPADQLA+AGLTPSHIAATVFNILGQTREALE
Sbjct: 657 QFMALDGLLDGKLKWRPIVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNILGQTREALE 716

Query: 718 IMS 720
           +M+
Sbjct: 717 VMT 719

Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP).
Capsicum annuum (taxid: 4072)
EC: 2EC: .EC: 2EC: .EC: 1EC: .EC: 7

>sp\|Q38854\|DXS_ARATH 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=DXS PE=1 SV=2	Back alignment and function description

>sp\|O22567\|DXS1_ORYSJ 1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CLA1 PE=2 SV=2	Back alignment and function description

>sp\|Q6YU51\|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0190000 PE=2 SV=1	Back alignment and function description

>sp\|B6IRB5\|DXS_RHOCS 1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=dxs PE=3 SV=1	Back alignment and function description

>sp\|B3QFY7\|DXS_RHOPT 1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain TIE-1) GN=dxs PE=3 SV=1	Back alignment and function description

>sp\|Q6NB76\|DXS_RHOPA 1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) GN=dxs PE=3 SV=1	Back alignment and function description

>sp\|Q11KE0\|DXS_MESSB 1-deoxy-D-xylulose-5-phosphate synthase OS=Mesorhizobium sp. (strain BNC1) GN=dxs PE=3 SV=1	Back alignment and function description

>sp\|A6WWC4\|DXS_OCHA4 1-deoxy-D-xylulose-5-phosphate synthase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=dxs PE=3 SV=1	Back alignment and function description

>sp\|Q21A74\|DXS_RHOPB 1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisB18) GN=dxs PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		723
225432422		716	PREDICTED: probable 1-deoxy-D-xylulose-5	0.988	0.998	0.891	0.0
255551595		720	1-deoxyxylulose-5-phosphate synthase, pu	0.990	0.994	0.892	0.0
46410858		720	putative 1-deoxy-D-xylulose 5-phosphate	0.993	0.997	0.887	0.0
189017038		685	putative chloroplast 1-deoxy-D-xylulose	0.943	0.995	0.916	0.0
164604984		720	1-deoxy-D-xylulose 5-phosphate synthase	0.993	0.997	0.883	0.0
343466207		719	1-deoxyxylulose-5-phosphate synthase [Si	0.993	0.998	0.873	0.0
449454454		718	PREDICTED: probable 1-deoxy-D-xylulose-5	0.990	0.997	0.873	0.0
408537471		717	1-deoxy-D-xylulose-5-phosphate synthase	0.988	0.997	0.871	0.0
124558735		720	1-deoxy-D-xylulose 5-phosphate synthase	0.994	0.998	0.872	0.0
356546474		721	PREDICTED: probable 1-deoxy-D-xylulose-5	0.990	0.993	0.871	0.0

>gi\|225432422\|ref\|XP_002277919.1\| PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [Vitis vinifera] gi\|297736933\|emb\|CBI26134.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1340 bits (3468), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 641/719 (89%), Positives = 679/719 (94%), Gaps = 4/719 (0%)

Query: 1   MALSAFSFPTYVSKATNSGPHKSSPVTSHFFGAALFSHFSHKLDNHQIQLKKRPNGVCAS 60
           MAL   SFP + S+A  S P + +P  SH F        S +    + + +KRPNGVCAS
Sbjct: 1   MALCTLSFPAHFSQAAASNPQRLTPQCSHLFLGVDLQCQSQQ----RSKARKRPNGVCAS 56

Query: 61  LSERGEYHSQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSL 120
           LS+R EYHSQRPPTPLLDTINYPIHMKNLS++ELKQLADELR+DV+FNVSKTGGHLGSSL
Sbjct: 57  LSDREEYHSQRPPTPLLDTINYPIHMKNLSVKELKQLADELRSDVVFNVSKTGGHLGSSL 116

Query: 121 GVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGRRDKMHTMRQTDGLSGFTKRSESE 180
           GV+ELTVALHYVFNAP+DRILWDVGHQ+YPHKILTGRRD+MHTMRQTDGL+GFTKRSESE
Sbjct: 117 GVVELTVALHYVFNAPQDRILWDVGHQSYPHKILTGRRDQMHTMRQTDGLAGFTKRSESE 176

Query: 181 YDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDM 240
           YDCFGTGHSST+ISAGLGMAVGRDLKG+ NNV+AVIGDGAMTAGQAYEAMNNAGYLDSDM
Sbjct: 177 YDCFGTGHSSTTISAGLGMAVGRDLKGKNNNVIAVIGDGAMTAGQAYEAMNNAGYLDSDM 236

Query: 241 IVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHE 300
           IVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHE
Sbjct: 237 IVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHE 296

Query: 301 LAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHV 360
           LAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHN+DDLVAIL+EVK+TKTTGPVLIHV
Sbjct: 297 LAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVAILKEVKSTKTTGPVLIHV 356

Query: 361 VTEKGRGYPYAEKAADKYHGVAKFDPATGKQFKSSARTQSYTTYFAEALIAEAEVDKDVV 420
           VTEKGRGYPYAEKAADKYHGV KFDPATGKQFKSSA TQSYTTYFAEALIAEAEVDKD+V
Sbjct: 357 VTEKGRGYPYAEKAADKYHGVTKFDPATGKQFKSSAPTQSYTTYFAEALIAEAEVDKDIV 416

Query: 421 AIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAY 480
           AIHAAMGGGTGLNLF RRFPTRCFDVGIAEQHAVTFAAGLACEG+KPFCAIYSSFMQRAY
Sbjct: 417 AIHAAMGGGTGLNLFHRRFPTRCFDVGIAEQHAVTFAAGLACEGIKPFCAIYSSFMQRAY 476

Query: 481 DQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHM 540
           DQVVHDVDLQKLPV+FAMDRAGLVGADGPTHCG+FDVTFMACLPNMVVMAP+DEAELFHM
Sbjct: 477 DQVVHDVDLQKLPVKFAMDRAGLVGADGPTHCGAFDVTFMACLPNMVVMAPADEAELFHM 536

Query: 541 VATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQS 600
           VATAAAIDDRPSCFRYPRGNG+GVELPPGNKGIP+EVG+GRILIEGERVALLGYGTAVQS
Sbjct: 537 VATAAAIDDRPSCFRYPRGNGVGVELPPGNKGIPIEVGRGRILIEGERVALLGYGTAVQS 596

Query: 601 CLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFL 660
           CL AS+LLE +GLR+TVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHV QFL
Sbjct: 597 CLVASSLLEQHGLRITVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVAQFL 656

Query: 661 AQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALEIM 719
           A +GLLDGT KW P+VLPDRYIDHG+PADQLA AGLTPSHIAATVFNILGQTREALEIM
Sbjct: 657 ALNGLLDGTTKWSPMVLPDRYIDHGAPADQLAMAGLTPSHIAATVFNILGQTREALEIM 715

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255551595\|ref\|XP_002516843.1\| 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis] gi\|223543931\|gb\|EEF45457.1\| 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|46410858\|gb\|AAS94123.1\| putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]	Back alignment and taxonomy information

>gi\|189017038\|gb\|ACD70396.1\| putative chloroplast 1-deoxy-D-xylulose 5-phosphate synthase [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|164604984\|dbj\|BAF98288.1\| 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]	Back alignment and taxonomy information

>gi\|343466207\|gb\|AEM42997.1\| 1-deoxyxylulose-5-phosphate synthase [Siraitia grosvenorii]	Back alignment and taxonomy information

>gi\|449454454\|ref\|XP_004144970.1\| PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like [Cucumis sativus] gi\|449473276\|ref\|XP_004153837.1\| PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like [Cucumis sativus] gi\|449507648\|ref\|XP_004163093.1\| PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|408537471\|gb\|AFU75321.1\| 1-deoxy-D-xylulose-5-phosphate synthase 2 [Aquilaria sinensis]	Back alignment and taxonomy information

>gi\|124558735\|gb\|ABN13970.1\| 1-deoxy-D-xylulose 5-phosphate synthase [Gossypium barbadense]	Back alignment and taxonomy information

>gi\|356546474\|ref\|XP_003541651.1\| PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		723
TAIR\|locus:2130374		717	CLA1 "CLOROPLASTOS ALTERADOS 1	0.987	0.995	0.837	0.0
TAIR\|locus:2089885		641	DXPS1 "1-deoxy-D-xylulose 5-ph	0.526	0.594	0.797	4.4e-269
TAIR\|locus:2148047		700	DXPS3 "1-deoxy-D-xylulose 5-ph	0.460	0.475	0.596	2.3e-194
TIGR_CMR\|SPO_0247		642	SPO_0247 "1-deoxy-D-xylulose-5	0.868	0.978	0.575	2.8e-192
TIGR_CMR\|GSU_0686		637	GSU_0686 "deoxyxylulose-5-phos	0.842	0.956	0.500	3.2e-152
TIGR_CMR\|SO_1525		622	SO_1525 "deoxyxylulose-5-phosp	0.838	0.974	0.481	1.9e-145
UNIPROTKB\|P77488		620	dxs "Dxs" [Escherichia coli K-	0.838	0.977	0.487	3.6e-144
TIGR_CMR\|GSU_1764		626	GSU_1764 "deoxyxylulose-5-phos	0.845	0.976	0.482	7.5e-144
TIGR_CMR\|CHY_1985		622	CHY_1985 "1-deoxy-D-xylulose-5	0.788	0.916	0.489	6.1e-142
TIGR_CMR\|CPS_1088		630	CPS_1088 "1-deoxy-D-xylulose-5	0.814	0.934	0.473	1.9e-138

TAIR\|locus:2130374 CLA1 "CLOROPLASTOS ALTERADOS 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3130 (1106.9 bits), Expect = 0., P = 0.
 Identities = 601/718 (83%), Positives = 654/718 (91%)

Query:     1 MALSAFSFPTYVSKATNSGPHKSS-PVTSHFFGAALFSHF-SHKLDNHQIQLKKRPNGVC 58
             MA SAF+FP+Y+   T  G    S   TS     +L +   S  L  +      R   VC
Sbjct:     1 MASSAFAFPSYI--ITKGGLSTDSCKSTSLSSSRSLVTDLPSPCLKPNNNSHSNRRAKVC 58

Query:    59 ASLSERGEYHSQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGS 118
             ASL+E+GEY+S RPPTPLLDTINYPIHMKNLS++ELKQL+DELR+DVIFNVSKTGGHLGS
Sbjct:    59 ASLAEKGEYYSNRPPTPLLDTINYPIHMKNLSVKELKQLSDELRSDVIFNVSKTGGHLGS 118

Query:   119 SLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGRRDKMHTMRQTDGLSGFTKRSE 178
             SLGV+ELTVALHY+FN P+D+ILWDVGHQ+YPHKILTGRR KM TMRQT+GLSGFTKR E
Sbjct:   119 SLGVVELTVALHYIFNTPQDKILWDVGHQSYPHKILTGRRGKMPTMRQTNGLSGFTKRGE 178

Query:   179 SEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDS 238
             SE+DCFGTGHSST+ISAGLGMAVGRDLKG+ NNVVAVIGDGAMTAGQAYEAMNNAGYLDS
Sbjct:   179 SEHDCFGTGHSSTTISAGLGMAVGRDLKGKNNNVVAVIGDGAMTAGQAYEAMNNAGYLDS 238

Query:   239 DMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPM 298
             DMIVILNDNKQVSLPTATLDGP PPVGALSSALSRLQSN  LRELREVAKG+TKQIGGPM
Sbjct:   239 DMIVILNDNKQVSLPTATLDGPSPPVGALSSALSRLQSNPALRELREVAKGMTKQIGGPM 298

Query:   299 HELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLI 358
             H+LAAKVDEYARGMISG+GS+LFEELGLYYIGPVDGHN+DDLVAIL+EVK+T+TTGPVLI
Sbjct:   299 HQLAAKVDEYARGMISGTGSSLFEELGLYYIGPVDGHNIDDLVAILKEVKSTRTTGPVLI 358

Query:   359 HVVTEKGRGYPYAEKAADKYHGVAKFDPATGKQFKSSARTQSYTTYFAEALIAEAEVDKD 418
             HVVTEKGRGYPYAE+A DKYHGV KFDPATG+QFK++ +TQSYTTYFAEAL+AEAEVDKD
Sbjct:   359 HVVTEKGRGYPYAERADDKYHGVVKFDPATGRQFKTTNKTQSYTTYFAEALVAEAEVDKD 418

Query:   419 VVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQR 478
             VVAIHAAMGGGTGLNLF RRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQR
Sbjct:   419 VVAIHAAMGGGTGLNLFQRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQR 478

Query:   479 AYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELF 538
             AYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCG+FDVTFMACLPNM+VMAPSDEA+LF
Sbjct:   479 AYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMACLPNMIVMAPSDEADLF 538

Query:   539 HMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAV 598
             +MVATA AIDDRPSCFRYPRGNGIGV LPPGNKG+P+E+GKGRIL EGERVALLGYG+AV
Sbjct:   539 NMVATAVAIDDRPSCFRYPRGNGIGVALPPGNKGVPIEIGKGRILKEGERVALLGYGSAV 598

Query:   599 QSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQ 658
             QSCL A+ +LE  GL +TVADARFCKPLD ALIRSLAKSHEVLITVEEGSIGGFGSHVVQ
Sbjct:   599 QSCLGAAVMLEERGLNVTVADARFCKPLDRALIRSLAKSHEVLITVEEGSIGGFGSHVVQ 658

Query:   659 FLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREAL 716
             FLA DGLLDG +KWRP+VLPDRYIDHG+PADQLA+AGL PSHIAAT  N++G  REAL
Sbjct:   659 FLALDGLLDGKLKWRPMVLPDRYIDHGAPADQLAEAGLMPSHIAATALNLIGAPREAL 716

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008661 "1-deoxy-D-xylulose-5-phosphate synthase activity" evidence=IEA;IDA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016114 "terpenoid biosynthetic process" evidence=IEA

GO:0016624 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor" evidence=IEA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA;IMP

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA;TAS

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR\|locus:2089885 DXPS1 "1-deoxy-D-xylulose 5-phosphate synthase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2148047 DXPS3 "1-deoxy-D-xylulose 5-phosphate synthase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TIGR_CMR\|SPO_0247 SPO_0247 "1-deoxy-D-xylulose-5-phosphate synthase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

TIGR_CMR\|GSU_0686 GSU_0686 "deoxyxylulose-5-phosphate synthase" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

TIGR_CMR\|SO_1525 SO_1525 "deoxyxylulose-5-phosphate synthase" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

UNIPROTKB\|P77488 dxs "Dxs" [Escherichia coli K-12 (taxid:83333)]	Back alignment and assigned GO terms

TIGR_CMR\|GSU_1764 GSU_1764 "deoxyxylulose-5-phosphate synthase" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

TIGR_CMR\|CHY_1985 CHY_1985 "1-deoxy-D-xylulose-5-phosphate synthase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

TIGR_CMR\|CPS_1088 CPS_1088 "1-deoxy-D-xylulose-5-phosphate synthase" [Colwellia psychrerythraea 34H (taxid:167879)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A9IQP2	DXS_BART1	2, ., 2, ., 1, ., 7	0.5884	0.8630	0.9826	yes	no
A5V6A9	DXS_SPHWW	2, ., 2, ., 1, ., 7	0.5885	0.8782	0.9937	yes	no
A5VP09	DXS_BRUO2	2, ., 2, ., 1, ., 7	0.6291	0.8644	0.9720	yes	no
Q6G0D4	DXS_BARQU	2, ., 2, ., 1, ., 7	0.5965	0.8672	0.9796	yes	no
B0CKC0	DXS_BRUSI	2, ., 2, ., 1, ., 7	0.6291	0.8644	0.9720	yes	no
Q57ET1	DXS_BRUAB	2, ., 2, ., 1, ., 7	0.6275	0.8644	0.9720	yes	no
Q5LX42	DXS_RUEPO	2, ., 2, ., 1, ., 7	0.5747	0.8727	0.9828	yes	no
B5ZS68	DXS_RHILW	2, ., 2, ., 1, ., 7	0.5769	0.8699	0.9858	yes	no
Q8UHD7	DXS_AGRT5	2, ., 2, ., 1, ., 7	0.5890	0.8658	0.9796	yes	no
A9M8W0	DXS_BRUC2	2, ., 2, ., 1, ., 7	0.6291	0.8644	0.9720	yes	no
Q11KE0	DXS_MESSB	2, ., 2, ., 1, ., 7	0.6101	0.8769	0.9753	yes	no
Q5FUB1	DXS_GLUOX	2, ., 2, ., 1, ., 7	0.5812	0.8603	0.9424	yes	no
Q2RYD6	DXS1_RHORT	2, ., 2, ., 1, ., 7	0.5912	0.8699	0.9751	yes	no
Q8G292	DXS_BRUSU	2, ., 2, ., 1, ., 7	0.6291	0.8644	0.9720	yes	no
Q2KBR2	DXS_RHIEC	2, ., 2, ., 1, ., 7	0.5846	0.8630	0.9780	yes	no
A1URW6	DXS_BARBK	2, ., 2, ., 1, ., 7	0.5969	0.8769	0.9937	yes	no
B2IDK3	DXS_BEII9	2, ., 2, ., 1, ., 7	0.6018	0.8699	0.9797	yes	no
Q21A74	DXS_RHOPB	2, ., 2, ., 1, ., 7	0.6049	0.8713	0.9828	yes	no
Q6YU51	DXS2_ORYSJ	2, ., 2, ., 1, ., 7	0.75	0.9128	0.9256	no	no
Q28WA7	DXS1_JANSC	2, ., 2, ., 1, ., 7	0.5743	0.8658	0.9796	yes	no
O22567	DXS1_ORYSJ	2, ., 2, ., 1, ., 7	0.8875	0.9100	0.9138	yes	no
Q1QQ40	DXS_NITHX	2, ., 2, ., 1, ., 7	0.5761	0.8893	0.9625	yes	no
Q92RJ1	DXS_RHIME	2, ., 2, ., 1, ., 7	0.5953	0.8658	0.9705	yes	no
A8IBS1	DXS_AZOC5	2, ., 2, ., 1, ., 7	0.6066	0.8492	0.9578	yes	no
A5EEQ0	DXS_BRASB	2, ., 2, ., 1, ., 7	0.5971	0.8644	0.9750	yes	no
Q2GC13	DXS_NOVAD	2, ., 2, ., 1, ., 7	0.5894	0.8644	0.9765	yes	no
B2S9T6	DXS_BRUA1	2, ., 2, ., 1, ., 7	0.6275	0.8644	0.9720	yes	no
Q2IRL7	DXS_RHOP2	2, ., 2, ., 1, ., 7	0.5996	0.8699	0.9858	yes	no
Q2RR29	DXS2_RHORT	2, ., 2, ., 1, ., 7	0.5928	0.8699	0.9751	yes	no
Q0ARE5	DXS_MARMM	2, ., 2, ., 1, ., 7	0.5925	0.8672	0.9751	yes	no
Q07SR3	DXS_RHOP5	2, ., 2, ., 1, ., 7	0.6015	0.8672	0.9796	yes	no
Q985Y3	DXS_RHILO	2, ., 2, ., 1, ., 7	0.6149	0.8713	0.9890	yes	no
Q1MKN4	DXS_RHIL3	2, ., 2, ., 1, ., 7	0.5832	0.8699	0.9858	yes	no
A4YQ36	DXS_BRASO	2, ., 2, ., 1, ., 7	0.5971	0.8644	0.9750	yes	no
B3PS68	DXS_RHIE6	2, ., 2, ., 1, ., 7	0.5828	0.8658	0.9811	yes	no
Q2YMF0	DXS_BRUA2	2, ., 2, ., 1, ., 7	0.6259	0.8644	0.9720	yes	no
Q2W367	DXS_MAGSA	2, ., 2, ., 1, ., 7	0.6130	0.8769	0.9844	yes	no
Q8YFM2	DXS_BRUME	2, ., 2, ., 1, ., 7	0.6291	0.8644	0.9720	yes	no
A7IPK6	DXS_XANP2	2, ., 2, ., 1, ., 7	0.5993	0.8713	0.9797	yes	no
B3QFY7	DXS_RHOPT	2, ., 2, ., 1, ., 7	0.6097	0.8644	0.9750	yes	no
O78328	DXS_CAPAN	2, ., 2, ., 1, ., 7	0.8658	0.9903	0.9958	N/A	no
B6IRB5	DXS_RHOCS	2, ., 2, ., 1, ., 7	0.6263	0.8630	0.9719	yes	no
Q6NB76	DXS_RHOPA	2, ., 2, ., 1, ., 7	0.6097	0.8644	0.9750	yes	no
Q3SUZ1	DXS_NITWN	2, ., 2, ., 1, ., 7	0.5978	0.8644	0.9384	yes	no
Q130G7	DXS_RHOPS	2, ., 2, ., 1, ., 7	0.6012	0.8699	0.9858	yes	no
C0RHE3	DXS_BRUMB	2, ., 2, ., 1, ., 7	0.6291	0.8644	0.9720	yes	no
Q6G4D1	DXS_BARHE	2, ., 2, ., 1, ., 7	0.5996	0.8672	0.9796	yes	no
A6WWC4	DXS_OCHA4	2, ., 2, ., 1, ., 7	0.6315	0.8713	0.9874	yes	no
Q89RW1	DXS_BRAJA	2, ., 2, ., 1, ., 7	0.6009	0.8644	0.9455	yes	no
Q38854	DXS_ARATH	2, ., 2, ., 1, ., 7	0.8310	0.9903	0.9986	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.2.1	0.963
4th Layer	2.2.1.7	0.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00019845001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (711 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00016085001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (471 aa)		•	•	•	0.981
	GSVIVG00002540001	RecName- Full=2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; EC=4.6.1.12; (183 aa)		•		•	0.715
	GSVIVG00035363001	SubName- Full=Chromosome undetermined scaffold_77, whole genome shotgun sequence; (238 aa)		•		•	0.686
	GSVIVG00017298001	SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (339 aa)		•		•	0.599
	GSVIVG00024531001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (740 aa)		•		•	0.478
	GSVIVG00011801001	SubName- Full=Chromosome undetermined scaffold_339, whole genome shotgun sequence; (252 aa)	•				0.470
	GSVIVG00035470001	SubName- Full=Chromosome chr12 scaffold_78, whole genome shotgun sequence; (497 aa)				•	0.410

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		723
PLN02582		677	PLN02582, PLN02582, 1-deoxy-D-xylulose-5-phosphate	0.0
PLN02234		641	PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate	0.0
PRK05444		580	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate	0.0
COG1154		627	COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [	0.0
PRK12571		641	PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate	0.0
PLN02225		701	PLN02225, PLN02225, 1-deoxy-D-xylulose-5-phosphate	0.0
TIGR00204		617	TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate syn	0.0
pfam13292		272	pfam13292, DXP_synthase_N, 1-deoxy-D-xylulose-5-ph	1e-166
PRK12315		581	PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate	1e-157
cd02007		195	cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) fam	5e-97
cd07033		156	cd07033, TPP_PYR_DXS_TK_like, Pyrimidine (PYR) bin	4e-69
COG3958		312	COG3958, COG3958, Transketolase, C-terminal subuni	7e-58
pfam02779		172	pfam02779, Transket_pyr, Transketolase, pyrimidine	2e-55
smart00861		136	smart00861, Transket_pyr, Transketolase, pyrimidin	7e-46
pfam02780		124	pfam02780, Transketolase_C, Transketolase, C-termi	4e-33
PRK05899		586	PRK05899, PRK05899, transketolase; Reviewed	5e-33
cd02007		195	cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) fam	4e-23
PTZ00182		355	PTZ00182, PTZ00182, 3-methyl-2-oxobutanate dehydro	8e-22
cd06586		154	cd06586, TPP_enzyme_PYR, Pyrimidine (PYR) binding	5e-20
COG0022		324	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogena	4e-18
cd02012		255	cd02012, TPP_TK, Thiamine pyrophosphate (TPP) fami	5e-14
PRK09212		327	PRK09212, PRK09212, pyruvate dehydrogenase subunit	6e-14
COG3959		243	COG3959, COG3959, Transketolase, N-terminal subuni	4e-12
cd07036		167	cd07036, TPP_PYR_E1-PDHc-beta_like, Pyrimidine (PY	4e-10
PLN02683		356	PLN02683, PLN02683, pyruvate dehydrogenase E1 comp	3e-09
COG0021		663	COG0021, TktA, Transketolase [Carbohydrate transpo	3e-09
PRK11892		464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	7e-07
PTZ00089		661	PTZ00089, PTZ00089, transketolase; Provisional	2e-06
COG0021		663	COG0021, TktA, Transketolase [Carbohydrate transpo	6e-06
PLN02790		654	PLN02790, PLN02790, transketolase	6e-06
TIGR03181		341	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E	1e-05
cd02000		293	cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosph	2e-05
TIGR00232		653	TIGR00232, tktlase_bact, transketolase, bacterial	7e-05
COG1071		358	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogena	3e-04
pfam00456		333	pfam00456, Transketolase_N, Transketolase, thiamin	4e-04
cd00568		168	cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP)	5e-04
CHL00144		327	CHL00144, odpB, pyruvate dehydrogenase E1 componen	0.003

>gnl\|CDD\|178194 PLN02582, PLN02582, 1-deoxy-D-xylulose-5-phosphate synthase	Back alignment and domain information

 Score = 1408 bits (3647), Expect = 0.0
 Identities = 616/672 (91%), Positives = 648/672 (96%), Gaps = 2/672 (0%)

Query: 51  KKRPNGVCASLS--ERGEYHSQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFN 108
             RP+GVCASLS  E  EY SQRPPTPLLDTINYPIHMKNLS++ELKQLADELR+DVIFN
Sbjct: 6   SNRPSGVCASLSPEESAEYPSQRPPTPLLDTINYPIHMKNLSVKELKQLADELRSDVIFN 65

Query: 109 VSKTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGRRDKMHTMRQTD 168
           VSKTGGHLGSSLGV+ELTVALHYVFNAP+D+ILWDVGHQ+YPHKILTGRRDKMHTMRQT+
Sbjct: 66  VSKTGGHLGSSLGVVELTVALHYVFNAPQDKILWDVGHQSYPHKILTGRRDKMHTMRQTN 125

Query: 169 GLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYE 228
           GLSGFTKR+ESEYDCFGTGHSST+ISAGLGMAVGRDLKG+KNNVVAVIGDGAMTAGQAYE
Sbjct: 126 GLSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQAYE 185

Query: 229 AMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAK 288
           AMNNAGYLDSDMIVILNDNKQVSLPTATLDGP PPVGALSSALSRLQS+RPLRELREVAK
Sbjct: 186 AMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAK 245

Query: 289 GVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVK 348
           GVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHN+DDLV IL EVK
Sbjct: 246 GVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILREVK 305

Query: 349 NTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDPATGKQFKSSARTQSYTTYFAEA 408
           +TKTTGPVLIHVVTEKGRGYPYAE+AADKYHGV KFDPATGKQFK  A+TQSYTTYFAEA
Sbjct: 306 STKTTGPVLIHVVTEKGRGYPYAERAADKYHGVVKFDPATGKQFKVKAKTQSYTTYFAEA 365

Query: 409 LIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPF 468
           LIAEAEVDKDVVAIHAAMGGGTGLNLF RRFPTRCFDVGIAEQHAVTFAAGLACEGLKPF
Sbjct: 366 LIAEAEVDKDVVAIHAAMGGGTGLNLFARRFPTRCFDVGIAEQHAVTFAAGLACEGLKPF 425

Query: 469 CAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVV 528
           CAIYSSF+QR YDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCG+FDVT+MACLPNMVV
Sbjct: 426 CAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVV 485

Query: 529 MAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGER 588
           MAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGV+LPP NKGIP+EVGKGRIL+EGER
Sbjct: 486 MAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVQLPPNNKGIPIEVGKGRILLEGER 545

Query: 589 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS 648
           VALLGYGTAVQSCLAA++LLE +GL  TVADARFCKPLD ALIRSLAKSHEVLITVEEGS
Sbjct: 546 VALLGYGTAVQSCLAAASLLERHGLSATVADARFCKPLDRALIRSLAKSHEVLITVEEGS 605

Query: 649 IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNI 708
           IGGFGSHV QF+A DGLLDG +KWRPLVLPDRYIDHG+PADQLA+AGLTPSHIAATV N+
Sbjct: 606 IGGFGSHVAQFMALDGLLDGKLKWRPLVLPDRYIDHGAPADQLAEAGLTPSHIAATVLNV 665

Query: 709 LGQTREALEIMS 720
           LGQTREAL+IMS
Sbjct: 666 LGQTREALQIMS 677

Length = 677

>gnl\|CDD\|177878 PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate synthase	Back alignment and domain information

>gnl\|CDD\|235470 PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	Back alignment and domain information

>gnl\|CDD\|224076 COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]	Back alignment and domain information

>gnl\|CDD\|183601 PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	Back alignment and domain information

>gnl\|CDD\|177870 PLN02225, PLN02225, 1-deoxy-D-xylulose-5-phosphate synthase	Back alignment and domain information

>gnl\|CDD\|129308 TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate synthase	Back alignment and domain information

>gnl\|CDD\|222031 pfam13292, DXP_synthase_N, 1-deoxy-D-xylulose-5-phosphate synthase	Back alignment and domain information

>gnl\|CDD\|237053 PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	Back alignment and domain information

>gnl\|CDD\|238965 cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis	Back alignment and domain information

>gnl\|CDD\|132916 cd07033, TPP_PYR_DXS_TK_like, Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins	Back alignment and domain information

>gnl\|CDD\|226467 COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|217226 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain	Back alignment and domain information

>gnl\|CDD\|214865 smart00861, Transket_pyr, Transketolase, pyrimidine binding domain	Back alignment and domain information

>gnl\|CDD\|217227 pfam02780, Transketolase_C, Transketolase, C-terminal domain	Back alignment and domain information

>gnl\|CDD\|235639 PRK05899, PRK05899, transketolase; Reviewed	Back alignment and domain information

>gnl\|CDD\|238965 cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis	Back alignment and domain information

>gnl\|CDD\|185502 PTZ00182, PTZ00182, 3-methyl-2-oxobutanate dehydrogenase; Provisional	Back alignment and domain information

>gnl\|CDD\|132915 cd06586, TPP_enzyme_PYR, Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes	Back alignment and domain information

>gnl\|CDD\|223101 COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|238970 cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates	Back alignment and domain information

>gnl\|CDD\|169719 PRK09212, PRK09212, pyruvate dehydrogenase subunit beta; Validated	Back alignment and domain information

>gnl\|CDD\|226468 COG3959, COG3959, Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|132919 cd07036, TPP_PYR_E1-PDHc-beta_like, Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins	Back alignment and domain information

>gnl\|CDD\|215368 PLN02683, PLN02683, pyruvate dehydrogenase E1 component subunit beta	Back alignment and domain information

>gnl\|CDD\|223100 COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional	Back alignment and domain information

>gnl\|CDD\|173383 PTZ00089, PTZ00089, transketolase; Provisional	Back alignment and domain information

>gnl\|CDD\|223100 COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|215424 PLN02790, PLN02790, transketolase	Back alignment and domain information

>gnl\|CDD\|213783 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit	Back alignment and domain information

>gnl\|CDD\|238958 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)	Back alignment and domain information

>gnl\|CDD\|232887 TIGR00232, tktlase_bact, transketolase, bacterial and yeast	Back alignment and domain information

>gnl\|CDD\|223997 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|144157 pfam00456, Transketolase_N, Transketolase, thiamine diphosphate binding domain	Back alignment and domain information

>gnl\|CDD\|238318 cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor	Back alignment and domain information

>gnl\|CDD\|177066 CHL00144, odpB, pyruvate dehydrogenase E1 component beta subunit; Validated	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		723
COG1154		627	Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m	100.0
PLN02225		701	1-deoxy-D-xylulose-5-phosphate synthase	100.0
PLN02582		677	1-deoxy-D-xylulose-5-phosphate synthase	100.0
PLN02234		641	1-deoxy-D-xylulose-5-phosphate synthase	100.0
TIGR00204		617	dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s	100.0
PRK12571		641	1-deoxy-D-xylulose-5-phosphate synthase; Provision	100.0
PRK12315		581	1-deoxy-D-xylulose-5-phosphate synthase; Provision	100.0
PRK05444		580	1-deoxy-D-xylulose-5-phosphate synthase; Provision	100.0
KOG0523		632	consensus Transketolase [Carbohydrate transport an	100.0
PTZ00089		661	transketolase; Provisional	100.0
PRK12753		663	transketolase; Reviewed	100.0
PLN02790		654	transketolase	100.0
PRK05899		624	transketolase; Reviewed	100.0
PRK12754		663	transketolase; Reviewed	100.0
TIGR00232		653	tktlase_bact transketolase, bacterial and yeast. T	100.0
COG0021		663	TktA Transketolase [Carbohydrate transport and met	100.0
TIGR03186		889	AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. S	100.0
PRK09405		891	aceE pyruvate dehydrogenase subunit E1; Reviewed	100.0
PRK13012		896	2-oxoacid dehydrogenase subunit E1; Provisional	100.0
PF13292		270	DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate syn	100.0
COG3958		312	Transketolase, C-terminal subunit [Carbohydrate tr	100.0
TIGR00759		885	aceE pyruvate dehydrogenase E1 component, homodime	100.0
CHL00144		327	odpB pyruvate dehydrogenase E1 component beta subu	100.0
PRK09212		327	pyruvate dehydrogenase subunit beta; Validated	100.0
PLN02683		356	pyruvate dehydrogenase E1 component subunit beta	100.0
PRK11892		464	pyruvate dehydrogenase subunit beta; Provisional	100.0
PTZ00182		355	3-methyl-2-oxobutanate dehydrogenase; Provisional	100.0
COG0022		324	AcoB Pyruvate/2-oxoglutarate dehydrogenase complex	100.0
PRK05261		785	putative phosphoketolase; Provisional	100.0
COG2609		887	AceE Pyruvate dehydrogenase complex, dehydrogenase	100.0
COG3959		243	Transketolase, N-terminal subunit [Carbohydrate tr	100.0
PRK09404		924	sucA 2-oxoglutarate dehydrogenase E1 component; Re	100.0
KOG0524		359	consensus Pyruvate dehydrogenase E1, beta subunit	100.0
PF00456		332	Transketolase_N: Transketolase, thiamine diphospha	100.0
cd02007		195	TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s	100.0
cd02017		386	TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) fam	100.0
TIGR00239		929	2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon	100.0
cd02012		255	TPP_TK Thiamine pyrophosphate (TPP) family, Transk	100.0
KOG0525		362	consensus Branched chain alpha-keto acid dehydroge	100.0
cd07033		156	TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domai	100.0
cd07036		167	TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding	99.97
PF02779		178	Transket_pyr: Transketolase, pyrimidine binding do	99.97
smart00861		168	Transket_pyr Transketolase, pyrimidine binding dom	99.95
COG3957		793	Phosphoketolase [Carbohydrate transport and metabo	99.94
COG1071		358	AcoA Pyruvate/2-oxoglutarate dehydrogenase complex	99.92
CHL00149		341	odpA pyruvate dehydrogenase E1 component alpha sub	99.9
PLN02269		362	Pyruvate dehydrogenase E1 component subunit alpha	99.9
cd02000		293	TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP)	99.89
PLN02374		433	pyruvate dehydrogenase (acetyl-transferring)	99.89
PF00676		300	E1_dh: Dehydrogenase E1 component; InterPro: IPR00	99.87
TIGR03182		315	PDH_E1_alph_y pyruvate dehydrogenase E1 component,	99.87
PF02780		124	Transketolase_C: Transketolase, C-terminal domain;	99.87
PRK07119		352	2-ketoisovalerate ferredoxin reductase; Validated	99.86
TIGR03181		341	PDH_E1_alph_x pyruvate dehydrogenase E1 component,	99.86
TIGR03336		595	IOR_alpha indolepyruvate ferredoxin oxidoreductase	99.84
PRK08659		376	2-oxoglutarate ferredoxin oxidoreductase subunit a	99.83
PRK09627		375	oorA 2-oxoglutarate-acceptor oxidoreductase subuni	99.81
PRK09622		407	porA pyruvate flavodoxin oxidoreductase subunit al	99.81
cd02011		227	TPP_PK Thiamine pyrophosphate (TPP) family, Phosph	99.79
PRK08366		390	vorA 2-ketoisovalerate ferredoxin oxidoreductase s	99.78
KOG0225		394	consensus Pyruvate dehydrogenase E1, alpha subunit	99.78
PRK08367		394	porA pyruvate ferredoxin oxidoreductase subunit al	99.77
TIGR03710		562	OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha s	99.76
cd02016		265	TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) fami	99.73
PRK12270		1228	kgd alpha-ketoglutarate decarboxylase; Reviewed	99.65
cd00568		168	TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa	99.61
KOG1182		432	consensus Branched chain alpha-keto acid dehydroge	99.54
PF09364		379	XFP_N: XFP N-terminal domain; InterPro: IPR018970	99.53
cd02013		196	TPP_Xsc_like Thiamine pyrophosphate (TPP) family,	99.5
cd02004		172	TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam	99.49
PRK06163		202	hypothetical protein; Provisional	99.49
cd03371		188	TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp	99.48
cd02008		178	TPP_IOR_alpha Thiamine pyrophosphate (TPP) family,	99.47
cd03372		179	TPP_ComE Thiamine pyrophosphate (TPP) family, ComE	99.45
cd02001		157	TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil	99.45
TIGR02176		1165	pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid	99.45
COG0674		365	PorA Pyruvate:ferredoxin oxidoreductase and relate	99.44
cd02015		186	TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet	99.44
cd02010		177	TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto	99.41
cd02003		205	TPP_IolD Thiamine pyrophosphate (TPP) family, IolD	99.41
cd02006		202	TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s	99.39
cd02002		178	TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC	99.38
TIGR03846		181	sulfopy_beta sulfopyruvate decarboxylase, beta sub	99.36
cd02014		178	TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv	99.35
cd02005		183	TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family,	99.34
PF02775		153	TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter	99.34
cd02009		175	TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa	99.33
TIGR03297		361	Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi	99.29
KOG0451		913	consensus Predicted 2-oxoglutarate dehydrogenase,	99.28
PRK06112		578	acetolactate synthase catalytic subunit; Validated	99.27
COG0028		550	IlvB Thiamine pyrophosphate-requiring enzymes [ace	99.26
cd06586		154	TPP_enzyme_PYR Pyrimidine (PYR) binding domain of	99.24
PRK08322		547	acetolactate synthase; Reviewed	99.23
cd03375		193	TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o	99.23
COG4231		640	Indolepyruvate ferredoxin oxidoreductase, alpha an	99.22
TIGR02418		539	acolac_catab acetolactate synthase, catabolic. Ace	99.22
PRK08266		542	hypothetical protein; Provisional	99.21
PRK06546		578	pyruvate dehydrogenase; Provisional	99.2
PRK07064		544	hypothetical protein; Provisional	99.2
cd03376		235	TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam	99.2
PRK09124		574	pyruvate dehydrogenase; Provisional	99.19
PRK08199		557	thiamine pyrophosphate protein; Validated	99.19
PRK06965		587	acetolactate synthase 3 catalytic subunit; Validat	99.19
PRK07586		514	hypothetical protein; Validated	99.19
PRK05858		542	hypothetical protein; Provisional	99.18
PRK07524		535	hypothetical protein; Provisional	99.18
PRK11864		300	2-ketoisovalerate ferredoxin oxidoreductase subuni	99.18
PRK09107		595	acetolactate synthase 3 catalytic subunit; Validat	99.18
PRK06457		549	pyruvate dehydrogenase; Provisional	99.17
PRK08978		548	acetolactate synthase 2 catalytic subunit; Reviewe	99.17
PRK08611		576	pyruvate oxidase; Provisional	99.17
PLN02470		585	acetolactate synthase	99.16
PRK06725		570	acetolactate synthase 3 catalytic subunit; Validat	99.16
PRK09259		569	putative oxalyl-CoA decarboxylase; Validated	99.16
PRK07979		574	acetolactate synthase 3 catalytic subunit; Validat	99.16
TIGR01504		588	glyox_carbo_lig glyoxylate carboligase. Glyoxylate	99.16
PRK06456		572	acetolactate synthase catalytic subunit; Reviewed	99.15
PRK08979		572	acetolactate synthase 3 catalytic subunit; Validat	99.15
PRK06154		565	hypothetical protein; Provisional	99.15
PRK07418		616	acetolactate synthase 3 catalytic subunit; Reviewe	99.15
TIGR03393		539	indolpyr_decarb indolepyruvate decarboxylase, Erwi	99.15
PRK06466		574	acetolactate synthase 3 catalytic subunit; Validat	99.14
PRK06048		561	acetolactate synthase 3 catalytic subunit; Reviewe	99.14
TIGR03254		554	oxalate_oxc oxalyl-CoA decarboxylase. In a number	99.13
CHL00099		585	ilvB acetohydroxyacid synthase large subunit	99.13
PRK12474		518	hypothetical protein; Provisional	99.13
PRK06882		574	acetolactate synthase 3 catalytic subunit; Validat	99.13
PRK08527		563	acetolactate synthase 3 catalytic subunit; Validat	99.13
PRK08617		552	acetolactate synthase; Reviewed	99.13
PRK07710		571	acetolactate synthase catalytic subunit; Reviewed	99.13
TIGR02720		575	pyruv_oxi_spxB pyruvate oxidase. Members of this f	99.12
TIGR03457		579	sulphoacet_xsc sulfoacetaldehyde acetyltransferase	99.12
PRK07092		530	benzoylformate decarboxylase; Reviewed	99.11
PRK08273		597	thiamine pyrophosphate protein; Provisional	99.11
PRK07789		612	acetolactate synthase 1 catalytic subunit; Validat	99.11
PRK08155		564	acetolactate synthase catalytic subunit; Validated	99.11
PRK07282		566	acetolactate synthase catalytic subunit; Reviewed	99.1
PRK11269		591	glyoxylate carboligase; Provisional	99.1
TIGR00118		558	acolac_lg acetolactate synthase, large subunit, bi	99.09
PRK08327		569	acetolactate synthase catalytic subunit; Validated	99.07
PRK06276		586	acetolactate synthase catalytic subunit; Reviewed	99.07
PLN02573		578	pyruvate decarboxylase	99.06
PRK07449		568	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1	99.02
PRK07525		588	sulfoacetaldehyde acetyltransferase; Validated	99.02
PRK05778		301	2-oxoglutarate ferredoxin oxidoreductase subunit b	99.0
PRK11869		280	2-oxoacid ferredoxin oxidoreductase subunit beta;	99.0
cd02018		237	TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru	98.99
PRK11866		279	2-oxoacid ferredoxin oxidoreductase subunit beta;	98.98
KOG0450		1017	consensus 2-oxoglutarate dehydrogenase, E1 subunit	98.98
TIGR03394		535	indol_phenyl_DC indolepyruvate/phenylpyruvate deca	98.96
PRK09628		277	oorB 2-oxoglutarate-acceptor oxidoreductase subuni	98.94
PRK11867		286	2-oxoglutarate ferredoxin oxidoreductase subunit b	98.9
PRK11865		299	pyruvate ferredoxin oxidoreductase subunit beta; P	98.9
TIGR02177		287	PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta	98.86
PRK13030		1159	2-oxoacid ferredoxin oxidoreductase; Provisional	98.83
TIGR03336		595	IOR_alpha indolepyruvate ferredoxin oxidoreductase	98.8
COG0567		906	SucA 2-oxoglutarate dehydrogenase complex, dehydro	98.78
COG3961		557	Pyruvate decarboxylase and related thiamine pyroph	98.74
PRK09193		1165	indolepyruvate ferredoxin oxidoreductase; Validate	98.73
PLN02980		1655	2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi	98.66
PF03894		179	XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate	98.63
PRK13029		1186	2-oxoacid ferredoxin oxidoreductase; Provisional	98.62
KOG4166		675	consensus Thiamine pyrophosphate-requiring enzyme	98.6
PF01855		230	POR_N: Pyruvate flavodoxin/ferredoxin oxidoreducta	98.53
COG3962		617	Acetolactate synthase [Amino acid transport and me	98.49
KOG1185		571	consensus Thiamine pyrophosphate-requiring enzyme	98.34
KOG1184		561	consensus Thiamine pyrophosphate-requiring enzyme	98.31
COG1013		294	PorB Pyruvate:ferredoxin oxidoreductase and relate	97.79
COG4231		640	Indolepyruvate ferredoxin oxidoreductase, alpha an	97.72
COG3960		592	Glyoxylate carboligase [General function predictio	97.62
cd07034		160	TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) bindi	97.61
KOG0523		632	consensus Transketolase [Carbohydrate transport an	97.32
cd07035		155	TPP_PYR_POX_like Pyrimidine (PYR) binding domain o	97.15
COG1165		566	MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-car	97.06
TIGR03297		361	Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi	96.86
cd03377		365	TPP_PFOR_PNO Thiamine pyrophosphate (TPP family),	96.81
PRK13030		1159	2-oxoacid ferredoxin oxidoreductase; Provisional	96.76
PRK09193		1165	indolepyruvate ferredoxin oxidoreductase; Validate	96.56
PRK13029		1186	2-oxoacid ferredoxin oxidoreductase; Provisional	96.23
PF02776		172	TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-ter	96.22
TIGR03845		157	sulfopyru_alph sulfopyruvate decarboxylase, alpha	95.51
TIGR02176		1165	pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid	94.82
COG4032		172	Predicted thiamine-pyrophosphate-binding protein [	94.64
cd07039		164	TPP_PYR_POX Pyrimidine (PYR) binding domain of POX	94.47
cd07037		162	TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-	94.14
PRK07586		514	hypothetical protein; Validated	93.98
cd02001		157	TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil	93.96
cd02004		172	TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam	93.63
PRK07524		535	hypothetical protein; Provisional	93.53
cd07038		162	TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding dom	92.15
PRK12474		518	hypothetical protein; Provisional	91.83
PRK05858		542	hypothetical protein; Provisional	91.45
PRK06965		587	acetolactate synthase 3 catalytic subunit; Validat	91.29
PRK07064		544	hypothetical protein; Provisional	91.13
PRK06466		574	acetolactate synthase 3 catalytic subunit; Validat	90.96
TIGR00118		558	acolac_lg acetolactate synthase, large subunit, bi	90.95
PRK08155		564	acetolactate synthase catalytic subunit; Validated	90.91
cd02015		186	TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet	90.84
PRK07979		574	acetolactate synthase 3 catalytic subunit; Validat	90.77
PRK07282		566	acetolactate synthase catalytic subunit; Reviewed	90.66
cd03376		235	TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam	90.64
PRK07710		571	acetolactate synthase catalytic subunit; Reviewed	90.57
cd02014		178	TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv	90.37
PRK11866		279	2-oxoacid ferredoxin oxidoreductase subunit beta;	90.36
cd02010		177	TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto	90.12
PRK06163		202	hypothetical protein; Provisional	90.11
PRK07525		588	sulfoacetaldehyde acetyltransferase; Validated	90.11
PRK08199		557	thiamine pyrophosphate protein; Validated	90.07
cd02009		175	TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa	90.01
TIGR02177		287	PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta	89.84
PRK08322		547	acetolactate synthase; Reviewed	89.78
PRK11864		300	2-ketoisovalerate ferredoxin oxidoreductase subuni	89.75
PRK08527		563	acetolactate synthase 3 catalytic subunit; Validat	89.59
TIGR02418		539	acolac_catab acetolactate synthase, catabolic. Ace	89.5
PRK06457		549	pyruvate dehydrogenase; Provisional	89.43
PRK08611		576	pyruvate oxidase; Provisional	89.31
TIGR03846		181	sulfopy_beta sulfopyruvate decarboxylase, beta sub	89.23
PRK07789		612	acetolactate synthase 1 catalytic subunit; Validat	89.03
PRK09107		595	acetolactate synthase 3 catalytic subunit; Validat	88.94
cd02018		237	TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru	88.65
PRK11269		591	glyoxylate carboligase; Provisional	88.58
TIGR03457		579	sulphoacet_xsc sulfoacetaldehyde acetyltransferase	88.21
PRK07092		530	benzoylformate decarboxylase; Reviewed	88.18
TIGR01504		588	glyox_carbo_lig glyoxylate carboligase. Glyoxylate	88.15
cd06586		154	TPP_enzyme_PYR Pyrimidine (PYR) binding domain of	88.04
PRK08617		552	acetolactate synthase; Reviewed	87.66
PRK06725		570	acetolactate synthase 3 catalytic subunit; Validat	87.56
TIGR02720		575	pyruv_oxi_spxB pyruvate oxidase. Members of this f	87.54
PRK06546		578	pyruvate dehydrogenase; Provisional	87.45
PRK06882		574	acetolactate synthase 3 catalytic subunit; Validat	87.38
PRK06112		578	acetolactate synthase catalytic subunit; Validated	87.31
PRK08978		548	acetolactate synthase 2 catalytic subunit; Reviewe	87.13
PF09363		203	XFP_C: XFP C-terminal domain; InterPro: IPR018969	86.99
PRK09628		277	oorB 2-oxoglutarate-acceptor oxidoreductase subuni	86.96
PRK06456		572	acetolactate synthase catalytic subunit; Reviewed	86.89
PRK06276		586	acetolactate synthase catalytic subunit; Reviewed	86.69
PRK09124		574	pyruvate dehydrogenase; Provisional	86.65
PRK11865		299	pyruvate ferredoxin oxidoreductase subunit beta; P	86.3
PRK08266		542	hypothetical protein; Provisional	86.28
PRK07418		616	acetolactate synthase 3 catalytic subunit; Reviewe	86.23
cd01460		266	vWA_midasin VWA_Midasin: Midasin is a member of th	86.2
PLN02470		585	acetolactate synthase	85.93
PRK07449		568	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1	85.85
cd03372		179	TPP_ComE Thiamine pyrophosphate (TPP) family, ComE	85.84
cd02006		202	TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s	85.8
PLN02573		578	pyruvate decarboxylase	85.53
cd02013		196	TPP_Xsc_like Thiamine pyrophosphate (TPP) family,	85.45
PRK08979		572	acetolactate synthase 3 catalytic subunit; Validat	85.38
COG0028		550	IlvB Thiamine pyrophosphate-requiring enzymes [ace	85.32
cd02003		205	TPP_IolD Thiamine pyrophosphate (TPP) family, IolD	85.06
TIGR03254		554	oxalate_oxc oxalyl-CoA decarboxylase. In a number	84.45
PRK11867		286	2-oxoglutarate ferredoxin oxidoreductase subunit b	84.3
PRK06048		561	acetolactate synthase 3 catalytic subunit; Reviewe	84.07
cd02012		255	TPP_TK Thiamine pyrophosphate (TPP) family, Transk	84.03
PRK09259		569	putative oxalyl-CoA decarboxylase; Validated	83.22
CHL00099		585	ilvB acetohydroxyacid synthase large subunit	83.16
cd00568		168	TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa	82.7
cd02007		195	TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s	82.68
COG1071		358	AcoA Pyruvate/2-oxoglutarate dehydrogenase complex	81.54
cd07033		156	TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domai	81.4
TIGR03394		535	indol_phenyl_DC indolepyruvate/phenylpyruvate deca	81.18
PRK08273		597	thiamine pyrophosphate protein; Provisional	81.14
cd03371		188	TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp	80.87
PRK08327		569	acetolactate synthase catalytic subunit; Validated	80.7
TIGR00173		432	menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex	80.41

>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]	Back alignment and domain information

Probab=100.00  E-value=5.2e-149  Score=1220.30  Aligned_cols=621  Identities=58%  Similarity=0.943  Sum_probs=594.4

Q ss_pred             CCCcCCCCCccccccCCHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHhhccCCCCcEEEeCCCchHHHHHH
Q 004923           74 TPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKI  153 (723)
Q Consensus        74 ~~~l~~i~~~~~~k~~~~~~l~~la~~iR~~i~~~v~~~~GH~gsslg~~el~~aL~~~~~~p~D~~i~s~GH~~y~~~~  153 (723)
                      +|+|+.|++|.|||+|+.+||++||+|||..+++.|+++|||+|++||+||||+|||||||.|.|+||||+|||+|+||+
T Consensus         2 ~~~L~~i~~P~dLk~ls~~eL~~La~EiR~~li~~vS~~GGHlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQaYpHKi   81 (627)
T COG1154           2 YPLLDKINSPADLKKLSIEELPQLADEIREFLLEVVSATGGHLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQAYPHKI   81 (627)
T ss_pred             cchhhhcCCHHHHhhCCHHHHHHHHHHHHHHHHHHhccCCCccCCCcChhhhhHHHHHHhCCCCCCeEEecCcccchhHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChhHhHHHHhcCCCCCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHh
Q 004923          154 LTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNA  233 (723)
Q Consensus       154 l~G~~~~l~~~r~~~gl~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A  233 (723)
                      ||||+++|.|+||.+|++|||+|.||+||.|++||+|+|||+|+|||.|++++|++++||||||||+++.||+|||||+|
T Consensus        82 LTGR~e~f~tlRq~~GlsGf~~r~ESe~D~f~~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~GmA~EALN~a  161 (627)
T COG1154          82 LTGRREQFDTLRQKDGLSGFPKREESEHDWFGVGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGMAFEALNNA  161 (627)
T ss_pred             hcCchhhcchhhhcCCCCCCCCcccCCCcccccCchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccchHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             h-hcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcc
Q 004923          234 G-YLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM  312 (723)
Q Consensus       234 ~-~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~  312 (723)
                      + ..+.|+|||+|||++ |+        ++++|+++++|+++++++.|+.+|+..|.+.+..|..+.+...+.++.+|++
T Consensus       162 g~~~~~~~iVILNDNeM-SI--------s~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l  232 (627)
T COG1154         162 GADLKSNLIVILNDNEM-SI--------SPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGL  232 (627)
T ss_pred             hhccCCCEEEEEeCCCc-cc--------CCCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhcc
Confidence            9 556999999999994 54        6789999999999999999999999999999888888899999999999998


Q ss_pred             cCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhcccccCCcccccC-ccccc
Q 004923          313 ISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDP-ATGKQ  391 (723)
Q Consensus       313 ~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e~~~~~~H~~~~fd~-~~g~~  391 (723)
                      +.+.  ++||++||+|++|+||||+++|..+|+.+|+  .++|++|||.|.|||||++||+++.+|||+.+||+ ++|..
T Consensus       233 ~~~~--~lFeelGf~YiGPiDGHni~~Li~~Lk~~kd--~~gPvllHv~T~KGKGY~pAE~d~~~~H~v~~f~~~~tg~~  308 (627)
T COG1154         233 LVPG--TLFEELGFNYIGPIDGHNLEELIPTLKNAKD--LKGPVLLHVVTKKGKGYKPAEEDPIKYHGVGPFDPIETGQS  308 (627)
T ss_pred             cCch--hhHHHhCCeeECCcCCCCHHHHHHHHHHHhc--CCCCEEEEEEecCCCCCChhhcChhhccCCCCCCccccCcc
Confidence            8764  8999999999999999999999999999998  58999999999999999999999999999999996 88887


Q ss_pred             ccCcchhhHHHHHHHHHHHHHHhcCCCEEEEeccCCCCcChhhhhhhCCCceeeccccHHHHHHHHHHHHhcCCeeEEee
Q 004923          392 FKSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI  471 (723)
Q Consensus       392 ~~~~~~~~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~GIaE~~~v~~AaGlA~~G~~p~~~t  471 (723)
                      .+++...++|+++|+++|.+++++|+++++++|+|.+++||..|+++||+||||+||||||+|++|+|||.+|+|||+++
T Consensus       309 ~~~~~~~~sys~vf~~~L~~~a~~d~~ivaITaAM~~gtGL~~F~~~fP~R~fDVGIAEQHAVT~AAGlA~~G~kPvvaI  388 (627)
T COG1154         309 KKSKPSAPSYTKVFGDTLCELAAKDEKIVAITAAMPEGTGLVKFSKKFPDRFFDVGIAEQHAVTFAAGLAAEGMKPVVAI  388 (627)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEecCCCCCCChHHHHHhCchhheehhhhHHHHHHHHHHHHhCCCCCEEEE
Confidence            66666678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHhCCCC
Q 004923          472 YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRP  551 (723)
Q Consensus       472 ~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~~~~P  551 (723)
                      ||+|+||||||++||+|+|++||+|+++|+|++|+||+|||+.+|++|+|++|||+|++|+|++|+..|+.+|+..+++|
T Consensus       389 YSTFLQRAYDQliHDvaiqnLPV~faIDRAGivG~DG~TH~G~fDls~l~~iPnmvi~aP~de~el~~ml~ta~~~~~gP  468 (627)
T COG1154         389 YSTFLQRAYDQLIHDVAIQNLPVTFAIDRAGIVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQMLYTALAQDDGP  468 (627)
T ss_pred             ecHHHHHHHHHHHHHHHhccCCeEEEEecCcccCCCCCccccHHHHHHHhcCCCcEEecCCCHHHHHHHHHHHHhcCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988899


Q ss_pred             EEEEecCCCCccccCCCCCCCCCcccCceEEeeeCCcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHHH
Q 004923          552 SCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALI  631 (723)
Q Consensus       552 ~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i  631 (723)
                      +.||+||++........  +...+++|++.++++|.||+||++|+++..|++|++.|.+.||+++|||+||+||+|++++
T Consensus       469 ~AiRyPrg~~~~~~~~~--~~~~~~~Gk~~i~~~G~~vail~~G~~~~~al~vae~L~~~Gi~~TVvd~rfvkPlD~~ll  546 (627)
T COG1154         469 VAIRYPRGNGVGVILTP--ELEPLEIGKGELLKEGEKVAILAFGTMLPEALKVAEKLNAYGISVTVVDPRFVKPLDEALL  546 (627)
T ss_pred             eEEEecCCCCCCCCccc--ccccccccceEEEecCCcEEEEecchhhHHHHHHHHHHHhcCCCcEEEcCeecCCCCHHHH
Confidence            99999999765442221  2457889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCEEEEEcCCC-CCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHHh
Q 004923          632 RSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG  710 (723)
Q Consensus       632 ~~~~~~~~~vvvvEe~~-~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~gl~~e~I~~~i~~ll~  710 (723)
                      +++++.++.+||+||+. .||+|+.|++++...++   .++++++|+||.|++||+++++++.+|||++.|+++|++++.
T Consensus       547 ~~La~~h~~~vtlEe~~~~GG~Gs~v~efl~~~~~---~~~v~~lglpd~fi~hg~~~el~~~~gLd~~~i~~~i~~~l~  623 (627)
T COG1154         547 LELAKSHDLVVTLEENVVDGGFGSAVLEFLAAHGI---LVPVLNLGLPDEFIDHGSPEELLAELGLDAEGIARRILEWLK  623 (627)
T ss_pred             HHHHhhcCeEEEEecCcccccHHHHHHHHHHhcCC---CCceEEecCChHhhccCCHHHHHHHcCCCHHHHHHHHHHHHh
Confidence            99999999999999998 79999999999999886   378999999999999999999999999999999999999886


Q ss_pred             cc
Q 004923          711 QT  712 (723)
Q Consensus       711 ~~  712 (723)
                      ..
T Consensus       624 ~~  625 (627)
T COG1154         624 AR  625 (627)
T ss_pred             hc
Confidence            54

>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase	Back alignment and domain information

>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase	Back alignment and domain information

>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase	Back alignment and domain information

>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase	Back alignment and domain information

>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	Back alignment and domain information

>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	Back alignment and domain information

>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	Back alignment and domain information

>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PTZ00089 transketolase; Provisional	Back alignment and domain information

>PRK12753 transketolase; Reviewed	Back alignment and domain information

>PLN02790 transketolase	Back alignment and domain information

>PRK05899 transketolase; Reviewed	Back alignment and domain information

>PRK12754 transketolase; Reviewed	Back alignment and domain information

>TIGR00232 tktlase_bact transketolase, bacterial and yeast	Back alignment and domain information

>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase	Back alignment and domain information

>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed	Back alignment and domain information

>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional	Back alignment and domain information

>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B	Back alignment and domain information

>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type	Back alignment and domain information

>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated	Back alignment and domain information

>PRK09212 pyruvate dehydrogenase subunit beta; Validated	Back alignment and domain information

>PLN02683 pyruvate dehydrogenase E1 component subunit beta	Back alignment and domain information

>PRK11892 pyruvate dehydrogenase subunit beta; Provisional	Back alignment and domain information

>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional	Back alignment and domain information

>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	Back alignment and domain information

>PRK05261 putative phosphoketolase; Provisional	Back alignment and domain information

>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]	Back alignment and domain information

>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed	Back alignment and domain information

>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]	Back alignment and domain information

>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2	Back alignment and domain information

>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis	Back alignment and domain information

>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E	Back alignment and domain information

>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component	Back alignment and domain information

>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates	Back alignment and domain information

>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion]	Back alignment and domain information

>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins	Back alignment and domain information

>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins	Back alignment and domain information

>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2	Back alignment and domain information

>smart00861 Transket_pyr Transketolase, pyrimidine binding domain	Back alignment and domain information

>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]	Back alignment and domain information

>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed	Back alignment and domain information

>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha	Back alignment and domain information

>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)	Back alignment and domain information

>PLN02374 pyruvate dehydrogenase (acetyl-transferring)	Back alignment and domain information

>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex	Back alignment and domain information

>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit	Back alignment and domain information

>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2	Back alignment and domain information

>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated	Back alignment and domain information

>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit	Back alignment and domain information

>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit	Back alignment and domain information

>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated	Back alignment and domain information

>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed	Back alignment and domain information

>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed	Back alignment and domain information

>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O	Back alignment and domain information

>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed	Back alignment and domain information

>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]	Back alignment and domain information

>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed	Back alignment and domain information

>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit	Back alignment and domain information

>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC)	Back alignment and domain information

>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed	Back alignment and domain information

>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor	Back alignment and domain information

>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]	Back alignment and domain information

>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria	Back alignment and domain information

>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc)	Back alignment and domain information

>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL)	Back alignment and domain information

>PRK06163 hypothetical protein; Provisional	Back alignment and domain information

>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins	Back alignment and domain information

>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit	Back alignment and domain information

>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE)	Back alignment and domain information

>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase)	Back alignment and domain information

>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric	Back alignment and domain information

>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]	Back alignment and domain information

>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS	Back alignment and domain information

>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation	Back alignment and domain information

>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv	Back alignment and domain information

>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl)	Back alignment and domain information

>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC)	Back alignment and domain information

>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit	Back alignment and domain information

>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions	Back alignment and domain information

>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC)	Back alignment and domain information

>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor	Back alignment and domain information

>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD)	Back alignment and domain information

>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase	Back alignment and domain information

>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK06112 acetolactate synthase catalytic subunit; Validated	Back alignment and domain information

>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]	Back alignment and domain information

>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes	Back alignment and domain information

>PRK08322 acetolactate synthase; Reviewed	Back alignment and domain information

>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	Back alignment and domain information

>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]	Back alignment and domain information

>TIGR02418 acolac_catab acetolactate synthase, catabolic	Back alignment and domain information

>PRK08266 hypothetical protein; Provisional	Back alignment and domain information

>PRK06546 pyruvate dehydrogenase; Provisional	Back alignment and domain information

>PRK07064 hypothetical protein; Provisional	Back alignment and domain information

>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria	Back alignment and domain information

>PRK09124 pyruvate dehydrogenase; Provisional	Back alignment and domain information

>PRK08199 thiamine pyrophosphate protein; Validated	Back alignment and domain information

>PRK06965 acetolactate synthase 3 catalytic subunit; Validated	Back alignment and domain information

>PRK07586 hypothetical protein; Validated	Back alignment and domain information

>PRK05858 hypothetical protein; Provisional	Back alignment and domain information

>PRK07524 hypothetical protein; Provisional	Back alignment and domain information

>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional	Back alignment and domain information

>PRK09107 acetolactate synthase 3 catalytic subunit; Validated	Back alignment and domain information

>PRK06457 pyruvate dehydrogenase; Provisional	Back alignment and domain information

>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed	Back alignment and domain information

>PRK08611 pyruvate oxidase; Provisional	Back alignment and domain information

>PLN02470 acetolactate synthase	Back alignment and domain information

>PRK06725 acetolactate synthase 3 catalytic subunit; Validated	Back alignment and domain information

>PRK09259 putative oxalyl-CoA decarboxylase; Validated	Back alignment and domain information

>PRK07979 acetolactate synthase 3 catalytic subunit; Validated	Back alignment and domain information

>TIGR01504 glyox_carbo_lig glyoxylate carboligase	Back alignment and domain information

>PRK06456 acetolactate synthase catalytic subunit; Reviewed	Back alignment and domain information

>PRK08979 acetolactate synthase 3 catalytic subunit; Validated	Back alignment and domain information

>PRK06154 hypothetical protein; Provisional	Back alignment and domain information

>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed	Back alignment and domain information

>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family	Back alignment and domain information

>PRK06466 acetolactate synthase 3 catalytic subunit; Validated	Back alignment and domain information

>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed	Back alignment and domain information

>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase	Back alignment and domain information

>CHL00099 ilvB acetohydroxyacid synthase large subunit	Back alignment and domain information

>PRK12474 hypothetical protein; Provisional	Back alignment and domain information

>PRK06882 acetolactate synthase 3 catalytic subunit; Validated	Back alignment and domain information

>PRK08527 acetolactate synthase 3 catalytic subunit; Validated	Back alignment and domain information

>PRK08617 acetolactate synthase; Reviewed	Back alignment and domain information

>PRK07710 acetolactate synthase catalytic subunit; Reviewed	Back alignment and domain information

>TIGR02720 pyruv_oxi_spxB pyruvate oxidase	Back alignment and domain information

>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase	Back alignment and domain information

>PRK07092 benzoylformate decarboxylase; Reviewed	Back alignment and domain information

>PRK08273 thiamine pyrophosphate protein; Provisional	Back alignment and domain information

>PRK07789 acetolactate synthase 1 catalytic subunit; Validated	Back alignment and domain information

>PRK08155 acetolactate synthase catalytic subunit; Validated	Back alignment and domain information

>PRK07282 acetolactate synthase catalytic subunit; Reviewed	Back alignment and domain information

>PRK11269 glyoxylate carboligase; Provisional	Back alignment and domain information

>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type	Back alignment and domain information

>PRK08327 acetolactate synthase catalytic subunit; Validated	Back alignment and domain information

>PRK06276 acetolactate synthase catalytic subunit; Reviewed	Back alignment and domain information

>PLN02573 pyruvate decarboxylase	Back alignment and domain information

>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated	Back alignment and domain information

>PRK07525 sulfoacetaldehyde acetyltransferase; Validated	Back alignment and domain information

>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated	Back alignment and domain information

>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional	Back alignment and domain information

>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways	Back alignment and domain information

>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional	Back alignment and domain information

>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family	Back alignment and domain information

>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed	Back alignment and domain information

>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed	Back alignment and domain information

>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional	Back alignment and domain information

>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family	Back alignment and domain information

>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional	Back alignment and domain information

>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit	Back alignment and domain information

>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]	Back alignment and domain information

>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]	Back alignment and domain information

>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated	Back alignment and domain information

>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding	Back alignment and domain information

>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria	Back alignment and domain information

>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional	Back alignment and domain information

>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]	Back alignment and domain information

>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains	Back alignment and domain information

>COG3962 Acetolactate synthase [Amino acid transport and metabolism]	Back alignment and domain information

>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]	Back alignment and domain information

>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]	Back alignment and domain information

>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]	Back alignment and domain information

>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]	Back alignment and domain information

>COG3960 Glyoxylate carboligase [General function prediction only]	Back alignment and domain information

>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins	Back alignment and domain information

>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins	Back alignment and domain information

>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]	Back alignment and domain information

>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase	Back alignment and domain information

>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes	Back alignment and domain information

>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional	Back alignment and domain information

>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated	Back alignment and domain information

>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional	Back alignment and domain information

>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor	Back alignment and domain information

>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit	Back alignment and domain information

>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric	Back alignment and domain information

>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]	Back alignment and domain information

>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX	Back alignment and domain information

>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins	Back alignment and domain information

>PRK07586 hypothetical protein; Validated	Back alignment and domain information

>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase)	Back alignment and domain information

>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL)	Back alignment and domain information

>PRK07524 hypothetical protein; Provisional	Back alignment and domain information

>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins	Back alignment and domain information

>PRK12474 hypothetical protein; Provisional	Back alignment and domain information

>PRK05858 hypothetical protein; Provisional	Back alignment and domain information

>PRK06965 acetolactate synthase 3 catalytic subunit; Validated	Back alignment and domain information

>PRK07064 hypothetical protein; Provisional	Back alignment and domain information

>PRK06466 acetolactate synthase 3 catalytic subunit; Validated	Back alignment and domain information

>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type	Back alignment and domain information

>PRK08155 acetolactate synthase catalytic subunit; Validated	Back alignment and domain information

>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS	Back alignment and domain information

>PRK07979 acetolactate synthase 3 catalytic subunit; Validated	Back alignment and domain information

>PRK07282 acetolactate synthase catalytic subunit; Reviewed	Back alignment and domain information

>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria	Back alignment and domain information

>PRK07710 acetolactate synthase catalytic subunit; Reviewed	Back alignment and domain information

>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions	Back alignment and domain information

>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional	Back alignment and domain information

>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation	Back alignment and domain information

>PRK06163 hypothetical protein; Provisional	Back alignment and domain information

>PRK07525 sulfoacetaldehyde acetyltransferase; Validated	Back alignment and domain information

>PRK08199 thiamine pyrophosphate protein; Validated	Back alignment and domain information

>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD)	Back alignment and domain information

>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family	Back alignment and domain information

>PRK08322 acetolactate synthase; Reviewed	Back alignment and domain information

>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional	Back alignment and domain information

>PRK08527 acetolactate synthase 3 catalytic subunit; Validated	Back alignment and domain information

>TIGR02418 acolac_catab acetolactate synthase, catabolic	Back alignment and domain information

>PRK06457 pyruvate dehydrogenase; Provisional	Back alignment and domain information

>PRK08611 pyruvate oxidase; Provisional	Back alignment and domain information

>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit	Back alignment and domain information

>PRK07789 acetolactate synthase 1 catalytic subunit; Validated	Back alignment and domain information

>PRK09107 acetolactate synthase 3 catalytic subunit; Validated	Back alignment and domain information

>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways	Back alignment and domain information

>PRK11269 glyoxylate carboligase; Provisional	Back alignment and domain information

>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase	Back alignment and domain information

>PRK07092 benzoylformate decarboxylase; Reviewed	Back alignment and domain information

>TIGR01504 glyox_carbo_lig glyoxylate carboligase	Back alignment and domain information

>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes	Back alignment and domain information

>PRK08617 acetolactate synthase; Reviewed	Back alignment and domain information

>PRK06725 acetolactate synthase 3 catalytic subunit; Validated	Back alignment and domain information

>TIGR02720 pyruv_oxi_spxB pyruvate oxidase	Back alignment and domain information

>PRK06546 pyruvate dehydrogenase; Provisional	Back alignment and domain information

>PRK06882 acetolactate synthase 3 catalytic subunit; Validated	Back alignment and domain information

>PRK06112 acetolactate synthase catalytic subunit; Validated	Back alignment and domain information

>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed	Back alignment and domain information

>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria	Back alignment and domain information

>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed	Back alignment and domain information

>PRK06456 acetolactate synthase catalytic subunit; Reviewed	Back alignment and domain information

>PRK06276 acetolactate synthase catalytic subunit; Reviewed	Back alignment and domain information

>PRK09124 pyruvate dehydrogenase; Provisional	Back alignment and domain information

>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional	Back alignment and domain information

>PRK08266 hypothetical protein; Provisional	Back alignment and domain information

>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed	Back alignment and domain information

>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family	Back alignment and domain information

>PLN02470 acetolactate synthase	Back alignment and domain information

>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated	Back alignment and domain information

>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE)	Back alignment and domain information

>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl)	Back alignment and domain information

>PLN02573 pyruvate decarboxylase	Back alignment and domain information

>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc)	Back alignment and domain information

>PRK08979 acetolactate synthase 3 catalytic subunit; Validated	Back alignment and domain information

>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]	Back alignment and domain information

>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv	Back alignment and domain information

>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase	Back alignment and domain information

>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed	Back alignment and domain information

>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed	Back alignment and domain information

>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates	Back alignment and domain information

>PRK09259 putative oxalyl-CoA decarboxylase; Validated	Back alignment and domain information

>CHL00099 ilvB acetohydroxyacid synthase large subunit	Back alignment and domain information

>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor	Back alignment and domain information

>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis	Back alignment and domain information

>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]	Back alignment and domain information

>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins	Back alignment and domain information

>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family	Back alignment and domain information

>PRK08273 thiamine pyrophosphate protein; Provisional	Back alignment and domain information

>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins	Back alignment and domain information

>PRK08327 acetolactate synthase catalytic subunit; Validated	Back alignment and domain information

>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		723
2o1s_A		621	1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From		1e-150
2o1x_A		629	1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From		1e-129
3ooy_A		616	Crystal Structure Of Human Transketolase (Tkt) Leng		1e-17
3mos_A		616	The Structure Of Human Transketolase Length = 616		1e-17
1ik6_A		369	3d Structure Of The E1beta Subunit Of Pyruvate Dehy		9e-13
2ozl_B		341	Human Pyruvate Dehydrogenase S264e Variant Length =		1e-11
3exe_B		329	Crystal Structure Of The Pyruvate Dehydrogenase (E1		2e-11
1um9_B		324	Branched-chain 2-oxo Acid Dehydrogenase (e1) From T		4e-10
1w85_B		324	The Crystal Structure Of Pyruvate Dehydrogenase E1		3e-09
3duf_B		325	Snapshots Of Catalysis In The E1 Subunit Of The Pyr		4e-09
1ni4_B		341	Human Pyruvate Dehydrogenase Length = 341		4e-09
2bp7_B		339	New Crystal Form Of The Pseudomonas Putida Branched		2e-06
1qs0_B		338	Crystal Structure Of Pseudomonas Putida 2-Oxoisoval		4e-05
3uk1_A		711	Crystal Structure Of A Transketolase From Burkholde		4e-04
3upt_A		711	Crystal Structure Of A Transketolase From Burkholde		5e-04

>pdb|2O1S|A Chain A, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From Escherichia Coli Length = 621