Citrus Sinensis ID: 004938
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 722 | 2.2.26 [Sep-21-2011] | |||||||
| O23337 | 722 | Pentatricopeptide repeat- | yes | no | 0.976 | 0.976 | 0.567 | 0.0 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 0.987 | 0.966 | 0.406 | 1e-171 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 0.933 | 0.909 | 0.385 | 1e-155 | |
| Q9LTV8 | 694 | Pentatricopeptide repeat- | no | no | 0.925 | 0.962 | 0.376 | 1e-147 | |
| Q9SR82 | 685 | Putative pentatricopeptid | no | no | 0.947 | 0.998 | 0.366 | 1e-142 | |
| Q9LUJ2 | 842 | Pentatricopeptide repeat- | no | no | 0.864 | 0.741 | 0.405 | 1e-140 | |
| A8MQA3 | 595 | Pentatricopeptide repeat- | no | no | 0.706 | 0.857 | 0.436 | 1e-140 | |
| Q9SHZ8 | 786 | Pentatricopeptide repeat- | no | no | 0.898 | 0.825 | 0.378 | 1e-139 | |
| Q9LNU6 | 760 | Pentatricopeptide repeat- | no | no | 0.950 | 0.902 | 0.344 | 1e-138 | |
| Q9SUH6 | 792 | Pentatricopeptide repeat- | no | no | 0.857 | 0.781 | 0.382 | 1e-138 |
| >sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 879 bits (2271), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/729 (56%), Positives = 562/729 (77%), Gaps = 24/729 (3%)
Query: 11 LTLP---TSTA-------ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLP 60
+TLP STA +S C SL H+KQ HA IL+ + +H NS L
Sbjct: 1 MTLPPPIASTAANTILEKLSFCKSLNHIKQLHAHILR-TVINHKLNSFLFN------LSV 53
Query: 61 TTTPSSLYYALSIFSQIPAPP-SRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFS 119
+++ +L YAL++FS IP+PP S V N F+R +S S P+ + + ++ + G +D+FS
Sbjct: 54 SSSSINLSYALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFS 113
Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
F PILKA+++ L EGM++HG+ K+ DPFV+TG + MY +CG+I AR +FD+MS
Sbjct: 114 FLPILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMS 173
Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
+RD+V W+ MI+ Y + GL DE LFEEMK SNV PDEM+L I+SAC R GN+ Y A
Sbjct: 174 HRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRA 233
Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
++EF+I+N+V +D HL + L+TMYA GCMDMA+ F K+ ++NL VSTAMVSGYS+ G+
Sbjct: 234 IYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGR 293
Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
++DA++IFDQ +KDL+CW+ MIS Y E+++PQEAL++F EM G+KPD V+M SVISA
Sbjct: 294 LDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISA 353
Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISW 419
CA+LG+LD+A+ +H I N +L +NNA+I+MYAKCG L++ R+VFE+M RRNV+SW
Sbjct: 354 CANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSW 413
Query: 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
+SMINA ++HG+A +AL F +MK E+++PN VTF+GVLY CSH+GLV+EG++IFASMT+
Sbjct: 414 SSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTD 473
Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAE 539
EYNI PK EHYGCMVDLFGRANLLREALE++E+MP A NVVIWGSLM+ACR+HGE+EL +
Sbjct: 474 EYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGK 533
Query: 540 FAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEV 599
FAAK++L+L+PDHDGALVL+SNIYA+++RW+DV +R+ M+E+ + KE+ SRI+ N +
Sbjct: 534 FAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKS 593
Query: 600 YEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLA 659
+EFL D+ HKQ+++IY KL+EV+S+LK AGYVPD S LVD+E+EEK++++LWHSEKLA
Sbjct: 594 HEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLA 653
Query: 660 LCYGLIS----SKKDSC--IRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKD 713
LC+GL++ +KDSC IRIVKNLRVCEDCH F KLVSKVY REI++RDRTRFH YK+
Sbjct: 654 LCFGLMNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKN 713
Query: 714 GVCSCKDYW 722
G+CSC+DYW
Sbjct: 714 GLCSCRDYW 722
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 602 bits (1552), Expect = e-171, Method: Compositional matrix adjust.
Identities = 296/729 (40%), Positives = 454/729 (62%), Gaps = 16/729 (2%)
Query: 3 TLSQPTKPLTLPTSTA----ISSCSSLTHMKQTHAQILKLS--HSHHSQNSLLLKLLLTS 56
S P +P T + I C SL +KQTH +++ +S + L L+S
Sbjct: 17 NFSNPNQPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSS 76
Query: 57 FSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI- 115
F+ SL YA +F +IP P S N IRA + P ++ FL M++E
Sbjct: 77 FA-------SLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYP 129
Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175
++++FP ++KA A L G +HG+ K GSD FV L+ Y +CG + A +F
Sbjct: 130 NKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVF 189
Query: 176 DKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLS 235
+ +D+V W+ MI+G+ Q G D+ L LF++M+ +V+ + + +LSAC++ NL
Sbjct: 190 TTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLE 249
Query: 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
+G V +I +N V ++ L + ++ MY CG ++ AK LFD + K+ V T M+ GY+
Sbjct: 250 FGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYA 309
Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC-GMKPDKVTML 354
+ E AR + + M +KD++ W+A+IS Y +N P EAL +F+E+Q+ MK +++T++
Sbjct: 310 ISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLV 369
Query: 355 SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR 414
S +SACA +G L+ + IH YI K+ + V +A+I MY+KCG LE +REVF + +R
Sbjct: 370 STLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKR 429
Query: 415 NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIF 474
+V W++MI A+HG A+ F KM++ ++ PNGVTF V ACSH GLVDE +F
Sbjct: 430 DVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLF 489
Query: 475 ASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
M + Y I P+ +HY C+VD+ GR+ L +A++ +E MP P+ +WG+L+ AC++H
Sbjct: 490 HQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHAN 549
Query: 535 IELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIE 594
+ LAE A +LL+L+P +DGA VLLSNIYAK +W++V ELRK M+ G+ KE CS IE
Sbjct: 550 LNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIE 609
Query: 595 MNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVIL-W 653
++ ++EFL+ D +H ++++Y KL+EV+ +LK GY P+I L +E+EE +E L
Sbjct: 610 IDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNL 669
Query: 654 HSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKD 713
HSEKLA+CYGLIS++ IR++KNLRVC DCH+ KL+S++Y REI++RDR RFHH+++
Sbjct: 670 HSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRN 729
Query: 714 GVCSCKDYW 722
G CSC D+W
Sbjct: 730 GQCSCNDFW 738
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 548 bits (1411), Expect = e-155, Method: Compositional matrix adjust.
Identities = 286/742 (38%), Positives = 437/742 (58%), Gaps = 68/742 (9%)
Query: 14 PTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSI 73
P+ + + +C +L ++ HAQ++K+ H+ N L KL+ F + + L YA+S+
Sbjct: 35 PSLSLLHNCKTLQSLRIIHAQMIKIGL--HNTNYALSKLI--EFCILSPHFEGLPYAISV 90
Query: 74 FSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGL 133
F I P + N R + S P ALK+++ M++ GL + ++FP +LK+ A+++
Sbjct: 91 FKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAF 150
Query: 134 LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP-------- 185
EG Q+HG KLG D +V T L+ MY G++ DA +FDK +RD+V
Sbjct: 151 KEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGY 210
Query: 186 -----------------------WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLS 222
W+ MI GY + G + E L LF++M +NV PDE +
Sbjct: 211 ASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMV 270
Query: 223 KILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK 282
++SAC+++G++ G VH +I D+
Sbjct: 271 TVVSACAQSGSIELGRQVHLWIDDHGFG-------------------------------S 299
Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
NL + A++ YS+ G++E A +F+++ KD+I W+ +I GY N +EAL LF EM
Sbjct: 300 NLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEML 359
Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG--GDLRVNNAIIDMYAKCGS 400
G P+ VTMLS++ ACAHLG +D + IH+YIDK G + ++IDMYAKCG
Sbjct: 360 RSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGD 419
Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
+E+A +VF + +++ SW +MI FA+HG A + F++M+ I P+ +TF+G+L A
Sbjct: 420 IEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSA 479
Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
CSH+G++D GR IF +MT +Y + PK EHYGCM+DL G + L +EA E++ M P+ V
Sbjct: 480 CSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGV 539
Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
IW SL+ AC++HG +EL E A+ L++++P++ G+ VLLSNIYA RW +V + R +
Sbjct: 540 IWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLN 599
Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV 640
++G+ K CS IE+++ V+EF+ D+ H + +IY L E+ L+ AG+VPD L
Sbjct: 600 DKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQ 659
Query: 641 DLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
++E+E K + HSEKLA+ +GLIS+K + + IVKNLRVC +CH KL+SK+Y REI
Sbjct: 660 EMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREI 719
Query: 701 VIRDRTRFHHYKDGVCSCKDYW 722
+ RDRTRFHH++DGVCSC DYW
Sbjct: 720 IARDRTRFHHFRDGVCSCNDYW 741
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 522 bits (1344), Expect = e-147, Method: Compositional matrix adjust.
Identities = 267/709 (37%), Positives = 420/709 (59%), Gaps = 41/709 (5%)
Query: 16 STAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFS 75
++ I S + +KQ HA++L L L+ KL+ S S T +A +F
Sbjct: 25 ASLIDSATHKAQLKQIHARLLVLGLQF--SGFLITKLIHASSSFGDIT-----FARQVFD 77
Query: 76 QIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLE 135
+P P N IR S ++ + AL ++ M ++ D F+FP +LKA + L
Sbjct: 78 DLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQM 137
Query: 136 GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY--RDIVPWSVMIDGY 193
G VH +LGF +D FVQ GL+ +Y C ++ AR +F+ + R IV W+ ++ Y
Sbjct: 138 GRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAY 197
Query: 194 FQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDA 253
QNG E L +F +M+ +V+PD + L +L+A + +L G ++H ++ + ++
Sbjct: 198 AQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEP 257
Query: 254 HLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK 313
L +L TMYA CG QV A+++FD+M
Sbjct: 258 DLLISLNTMYAKCG-------------------------------QVATAKILFDKMKSP 286
Query: 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIH 373
+LI W+AMISGYA+N + +EA+ +F+EM ++PD +++ S ISACA +G L+QA+ ++
Sbjct: 287 NLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMY 346
Query: 374 LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDAR 433
Y+ ++ + D+ +++A+IDM+AKCGS+E AR VF+R R+V+ W++MI + +HG AR
Sbjct: 347 EYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAR 406
Query: 434 NALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCM 493
A+ + M+ + PN VTF+G+L AC+H+G+V EG F M ++ I P+ +HY C+
Sbjct: 407 EAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMA-DHKINPQQQHYACV 465
Query: 494 VDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD 553
+DL GRA L +A E+++ MP P V +WG+L++AC+ H +EL E+AA+QL +DP +
Sbjct: 466 IDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNT 525
Query: 554 GALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTD 613
G V LSN+YA + W V E+R MKE+G+ K+ CS +E+ + F D+SH + +
Sbjct: 526 GHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYE 585
Query: 614 QIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCI 673
+I ++ + S LK G+V + ++L DL DEE E + HSE++A+ YGLIS+ + + +
Sbjct: 586 EIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPL 645
Query: 674 RIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
RI KNLR C +CH KL+SK+ REIV+RD RFHH+KDGVCSC DYW
Sbjct: 646 RITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 507 bits (1305), Expect = e-142, Method: Compositional matrix adjust.
Identities = 265/723 (36%), Positives = 412/723 (56%), Gaps = 39/723 (5%)
Query: 1 MSTLSQPTKPLTLP-TSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSL 59
MS ++ P+ + T IS ++ H+KQ H ++ H HH ++ L+ LLL
Sbjct: 1 MSIVTVPSATSKVQQIKTLISVACTVNHLKQIHVSLIN-HHLHH--DTFLVNLLLKRTLF 57
Query: 60 PTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFS 119
T Y+ +FS P + N I +H L +FL + GL + F+
Sbjct: 58 FRQTK----YSYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFT 113
Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
FP +LKA RA G+ +H L K GF D T L+ +Y G++ DA +FD++
Sbjct: 114 FPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIP 173
Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
R +V W+ + GY +G E ++LF++M V+PD + ++LSAC G+L GE
Sbjct: 174 DRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEW 233
Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
+ +++ + M+M K F V T +V+ Y++ G+
Sbjct: 234 IVKYMEE----------------------MEMQKNSF---------VRTTLVNLYAKCGK 262
Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
+E AR +FD MVEKD++ WS MI GYA N+ P+E ++LF +M +KPD+ +++ +S+
Sbjct: 263 MEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSS 322
Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISW 419
CA LG LD + ID++ F +L + NA+IDMYAKCG++ EVF+ M+ ++++
Sbjct: 323 CASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIM 382
Query: 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
+ I+ A +G + + F + + I P+G TF+G+L C HAGL+ +G F +++
Sbjct: 383 NAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISC 442
Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAE 539
Y + EHYGCMVDL+GRA +L +A L+ MP PN ++WG+L++ CR+ + +LAE
Sbjct: 443 VYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAE 502
Query: 540 FAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEV 599
K+L+ L+P + G V LSNIY+ RW + E+R M ++G+ K S IE+ +V
Sbjct: 503 TVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKV 562
Query: 600 YEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLA 659
+EFL D+SH +D+IY KL ++ +E++ G+VP D+E+EEK V+ +HSEKLA
Sbjct: 563 HEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLA 622
Query: 660 LCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCK 719
+ GLIS+ IR+VKNLRVC DCH +KL+SK+ REIV+RD RFH + +G CSC
Sbjct: 623 VALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCN 682
Query: 720 DYW 722
DYW
Sbjct: 683 DYW 685
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 500 bits (1288), Expect = e-140, Method: Compositional matrix adjust.
Identities = 254/626 (40%), Positives = 389/626 (62%), Gaps = 2/626 (0%)
Query: 99 KHALKVFLKML-NEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTG 157
K A+ +F +M+ +E +T + + ++ A A+ E L G +V+ G + + +
Sbjct: 217 KDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSA 276
Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
LV MY C I A+ +FD+ ++ + M Y + GL E L +F M S V PD
Sbjct: 277 LVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPD 336
Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
+ + +S+CS+ N+ +G++ H +++ N ++ + LI MY C D A +FD
Sbjct: 337 RISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFD 396
Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
++ K +V ++V+GY G+V+ A F+ M EK+++ W+ +ISG + + +EA+++
Sbjct: 397 RMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEV 456
Query: 338 FNEMQVC-GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA 396
F MQ G+ D VTM+S+ SAC HLG LD A+ I+ YI+KN D+R+ ++DM++
Sbjct: 457 FCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFS 516
Query: 397 KCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456
+CG ESA +F + R+V +WT+ I A A+ G+A A+ F+ M ++ + P+GV F+G
Sbjct: 517 RCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVG 576
Query: 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFA 516
L ACSH GLV +G+EIF SM + + P+ HYGCMVDL GRA LL EA++L+E MP
Sbjct: 577 ALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPME 636
Query: 517 PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELR 576
PN VIW SL+AACRV G +E+A +AA+++ L P+ G+ VLLSN+YA RW D+ ++R
Sbjct: 637 PNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVR 696
Query: 577 KSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIH 636
SMKE+G+ K S I++ + +EF + D SH + I L+EV G+VPD+
Sbjct: 697 LSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLS 756
Query: 637 SALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVY 696
+ L+D++++EK ++ HSEKLA+ YGLISS K + IRIVKNLRVC DCH+F K SKVY
Sbjct: 757 NVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVY 816
Query: 697 AREIVIRDRTRFHHYKDGVCSCKDYW 722
REI++RD RFH+ + G CSC D+W
Sbjct: 817 NREIILRDNNRFHYIRQGKCSCGDFW 842
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 500 bits (1287), Expect = e-140, Method: Compositional matrix adjust.
Identities = 237/543 (43%), Positives = 348/543 (64%), Gaps = 33/543 (6%)
Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN-VEPDEMVLSKILSACSRAGNLSYGEAV 240
++ W+ +I GY + G +L+ EM++S VEPD ++ A + ++ GE +
Sbjct: 84 NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETI 143
Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
H +I + ++Q++L+ +YANCG V
Sbjct: 144 HSVVIRSGFGSLIYVQNSLLHLYANCG-------------------------------DV 172
Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
A +FD+M EKDL+ W+++I+G+AEN P+EAL L+ EM G+KPD T++S++SAC
Sbjct: 173 ASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSAC 232
Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
A +G L +R+H+Y+ K +L +N ++D+YA+CG +E A+ +F+ M +N +SWT
Sbjct: 233 AKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWT 292
Query: 421 SMINAFAIHGDARNALIFFNKMKD-ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
S+I A++G + A+ F M+ E + P +TF+G+LYACSH G+V EG E F M
Sbjct: 293 SLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMRE 352
Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAE 539
EY I P+ EH+GCMVDL RA +++A E +++MP PNVVIW +L+ AC VHG+ +LAE
Sbjct: 353 EYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAE 412
Query: 540 FAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEV 599
FA Q+LQL+P+H G VLLSN+YA ++RW DV ++RK M G+ K S +E+ N V
Sbjct: 413 FARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRV 472
Query: 600 YEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLA 659
+EFL D+SH Q+D IY KL E+ L+ GYVP I + VD+E+EEK +++HSEK+A
Sbjct: 473 HEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIA 532
Query: 660 LCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCK 719
+ + LIS+ + S I +VKNLRVC DCH IKLVSKVY REIV+RDR+RFHH+K+G CSC+
Sbjct: 533 IAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQ 592
Query: 720 DYW 722
DYW
Sbjct: 593 DYW 595
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 494 bits (1272), Expect = e-139, Method: Compositional matrix adjust.
Identities = 259/684 (37%), Positives = 398/684 (58%), Gaps = 35/684 (5%)
Query: 74 FSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGL 133
F Q+P S I + A++V M+ EG+ +F+ +L ++A +
Sbjct: 103 FDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCM 162
Query: 134 LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM--------------- 178
G +VH KLG + V L+ MY CG + A+ +FD+M
Sbjct: 163 ETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALH 222
Query: 179 ----------------SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM-KMSNVEPDEMVL 221
+ RDIV W+ MI G+ Q G L++F +M + S + PD L
Sbjct: 223 MQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTL 282
Query: 222 SKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL 281
+ +LSAC+ L G+ +H I+ + + + LI+MY+ CG ++ A+ L ++
Sbjct: 283 ASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGT 342
Query: 282 KNLVVS--TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
K+L + TA++ GY + G + A+ IF + ++D++ W+AMI GY ++ EA+ LF
Sbjct: 343 KDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFR 402
Query: 340 EMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399
M G +P+ T+ +++S + L L ++IH K+ + V+NA+I MYAK G
Sbjct: 403 SMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAG 462
Query: 400 SLESAREVFERMR-RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
++ SA F+ +R R+ +SWTSMI A A HG A AL F M E + P+ +T++GV
Sbjct: 463 NITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVF 522
Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
AC+HAGLV++GR+ F M + I P HY CMVDLFGRA LL+EA E +E MP P+
Sbjct: 523 SACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPD 582
Query: 519 VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKS 578
VV WGSL++ACRVH I+L + AA++LL L+P++ GA L+N+Y+ +W++ ++RKS
Sbjct: 583 VVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKS 642
Query: 579 MKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSA 638
MK+ + KE+ S IE+ ++V+ F D +H + ++IY + ++ E+K GYVPD S
Sbjct: 643 MKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASV 702
Query: 639 LVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAR 698
L DLE+E K +++ HSEKLA+ +GLIS+ + +RI+KNLRVC DCH IK +SK+ R
Sbjct: 703 LHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGR 762
Query: 699 EIVIRDRTRFHHYKDGVCSCKDYW 722
EI++RD TRFHH+KDG CSC+DYW
Sbjct: 763 EIIVRDTTRFHHFKDGFCSCRDYW 786
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 492 bits (1267), Expect = e-138, Method: Compositional matrix adjust.
Identities = 252/732 (34%), Positives = 408/732 (55%), Gaps = 46/732 (6%)
Query: 30 QTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFI 89
Q HA+ILK S + + L+ S+S + A + IP P + I
Sbjct: 36 QAHARILK---SGAQNDGYISAKLIASYS----NYNCFNDADLVLQSIPDPTIYSFSSLI 88
Query: 90 RAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFG 149
A++ + ++ VF +M + GL D P + K A G Q+H + G
Sbjct: 89 YALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLD 148
Query: 150 SDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM 209
D FVQ + MY CG++ DAR +FD+MS +D+V S ++ Y + G +EV+ + EM
Sbjct: 149 MDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEM 208
Query: 210 KMSNVE-----------------------------------PDEMVLSKILSACSRAGNL 234
+ S +E PD++ +S +L + + L
Sbjct: 209 ESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEML 268
Query: 235 SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGY 294
+ G +H ++I + D + S +I MY G + LF++ + V A ++G
Sbjct: 269 NMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGL 328
Query: 295 SRAGQVEDARLIFD----QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
SR G V+ A +F+ Q +E +++ W+++I+G A+N EAL+LF EMQV G+KP+
Sbjct: 329 SRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNH 388
Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
VT+ S++ AC ++ L + H + + ++ V +A+IDMYAKCG + ++ VF
Sbjct: 389 VTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNM 448
Query: 411 MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470
M +N++ W S++N F++HG A+ + F + + P+ ++F +L AC GL DEG
Sbjct: 449 MPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEG 508
Query: 471 REIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACR 530
+ F M+ EY I P+ EHY CMV+L GRA L+EA +L++ MPF P+ +WG+L+ +CR
Sbjct: 509 WKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCR 568
Query: 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERAC 590
+ ++LAE AA++L L+P++ G VLLSNIYA W +V +R M+ G+ K C
Sbjct: 569 LQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGC 628
Query: 591 SRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREV 650
S I++ N VY L D+SH Q DQI EK++E+ E++ +G+ P++ AL D+E++E+ ++
Sbjct: 629 SWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQM 688
Query: 651 ILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHH 710
+ HSEKLA+ +GL+++ + ++++KNLR+C DCH IK +S REI IRD RFHH
Sbjct: 689 LWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHH 748
Query: 711 YKDGVCSCKDYW 722
+KDG+CSC D+W
Sbjct: 749 FKDGICSCGDFW 760
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 492 bits (1266), Expect = e-138, Method: Compositional matrix adjust.
Identities = 250/654 (38%), Positives = 379/654 (57%), Gaps = 35/654 (5%)
Query: 70 ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLT-IDRFSFPPILKAIA 128
A +F ++P + + N I + +++VF ++NE T +D + IL A+A
Sbjct: 173 ARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVA 232
Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
+ L GMQ+H L TK G S +V TG + +Y CGKI +F + DIV ++
Sbjct: 233 ELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNA 292
Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
MI GY NG + L+LF+E+ +S + S ++S +G+L A+H + + +N
Sbjct: 293 MIHGYTSNGETELSLSLFKELMLSGAR---LRSSTLVSLVPVSGHLMLIYAIHGYCLKSN 349
Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
L + VSTA+ + YS+ ++E AR +FD
Sbjct: 350 -------------------------------FLSHASVSTALTTVYSKLNEIESARKLFD 378
Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
+ EK L W+AMISGY +N ++A+ LF EMQ P+ VT+ ++SACA LG L
Sbjct: 379 ESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSL 438
Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
+ +H + F + V+ A+I MYAKCGS+ AR +F+ M ++N ++W +MI+ + +
Sbjct: 439 GKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGL 498
Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE 488
HG + AL F +M + I P VTF+ VLYACSHAGLV EG EIF SM + Y P +
Sbjct: 499 HGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVK 558
Query: 489 HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548
HY CMVD+ GRA L+ AL+ +E M P +W +L+ ACR+H + LA +++L +L
Sbjct: 559 HYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFEL 618
Query: 549 DPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRS 608
DPD+ G VLLSNI++ D+ + +R++ K+R + K + IE+ + F + D+S
Sbjct: 619 DPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQS 678
Query: 609 HKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSK 668
H Q +IYEKL ++ +++ AGY P+ AL D+E+EE+ ++ HSE+LA+ +GLI+++
Sbjct: 679 HPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATE 738
Query: 669 KDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
+ IRI+KNLRVC DCH KL+SK+ R IV+RD RFHH+KDGVCSC DYW
Sbjct: 739 PGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 722 | ||||||
| 225432698 | 727 | PREDICTED: pentatricopeptide repeat-cont | 0.966 | 0.960 | 0.689 | 0.0 | |
| 356540333 | 721 | PREDICTED: pentatricopeptide repeat-cont | 0.994 | 0.995 | 0.610 | 0.0 | |
| 357480897 | 726 | Pentatricopeptide repeat-containing prot | 0.961 | 0.955 | 0.611 | 0.0 | |
| 15233584 | 722 | pentatricopeptide repeat-containing prot | 0.976 | 0.976 | 0.567 | 0.0 | |
| 297800728 | 725 | pentatricopeptide repeat-containing prot | 0.987 | 0.983 | 0.566 | 0.0 | |
| 224111152 | 452 | predicted protein [Populus trichocarpa] | 0.563 | 0.900 | 0.769 | 0.0 | |
| 225442904 | 724 | PREDICTED: putative pentatricopeptide re | 0.983 | 0.980 | 0.444 | 1e-179 | |
| 449436619 | 723 | PREDICTED: putative pentatricopeptide re | 0.987 | 0.986 | 0.433 | 1e-178 | |
| 449491161 | 744 | PREDICTED: LOW QUALITY PROTEIN: putative | 0.987 | 0.958 | 0.433 | 1e-178 | |
| 224106277 | 738 | predicted protein [Populus trichocarpa] | 0.980 | 0.959 | 0.430 | 1e-175 |
| >gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Vitis vinifera] gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1028 bits (2657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/708 (68%), Positives = 597/708 (84%), Gaps = 10/708 (1%)
Query: 17 TAISSCSSLTHMKQTHAQIL--KLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIF 74
+A+SS +SLTH+KQ HAQIL KL S SLL+KL+++S +L SSL YALS+F
Sbjct: 28 SALSSATSLTHLKQVHAQILRSKLDRS----TSLLVKLVISSCALS----SSLDYALSVF 79
Query: 75 SQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLL 134
+ IP P + + N+F+R +S S P+ L V+ +M +GL +DRFSFPP+LKA++R + L+
Sbjct: 80 NLIPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLV 139
Query: 135 EGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYF 194
EG+++HGL KLGF SDPFVQTGLV MY ACG+I +ARLMFDKM +RD+V WS+MIDGY
Sbjct: 140 EGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYC 199
Query: 195 QNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAH 254
Q+GLF++ L LFEEMK NVEPDEM+LS +LSAC RAGNLSYG+ +H+FI++NN+ +D H
Sbjct: 200 QSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPH 259
Query: 255 LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD 314
LQS L+TMYA+CG MD+A LF+K+ KNLV STAMV+GYS+ GQ+E+AR +F+QMV+KD
Sbjct: 260 LQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKD 319
Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
L+CWSAMISGYAE++ PQEAL LFNEMQ G+KPD+VTMLSVI+ACAHLG LDQA+ IHL
Sbjct: 320 LVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHL 379
Query: 375 YIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARN 434
++DKN FGG L +NNA+I+MYAKCGSLE AR +F++M R+NVISWT MI+AFA+HGDA +
Sbjct: 380 FVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGS 439
Query: 435 ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMV 494
AL FF++M+DE+I+PNG+TF+GVLYACSHAGLV+EGR+IF SM NE+NI PK+ HYGCMV
Sbjct: 440 ALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMV 499
Query: 495 DLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554
DLFGRANLLREALELVE MP APNV+IWGSLMAACRVHGEIEL EFAAK+LL+LDPDHDG
Sbjct: 500 DLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDG 559
Query: 555 ALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQ 614
A V LSNIYAK +RW+DVG++RK MK +GI KER CSR E+NNE++EFL ADRSHK D+
Sbjct: 560 AHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADRSHKHADE 619
Query: 615 IYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIR 674
IYEKL EV+S+LK GY P+ S LVDLE+EEK+EV+LWHSEKLALCYGL+ SCIR
Sbjct: 620 IYEKLYEVVSKLKLVGYSPNTCSILVDLEEEEKKEVVLWHSEKLALCYGLMRDGTGSCIR 679
Query: 675 IVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
I+KNLRVCEDCH FIKL SKVY REIV+RDRTRFHHYKDGVCSCKDYW
Sbjct: 680 IIKNLRVCEDCHTFIKLASKVYEREIVVRDRTRFHHYKDGVCSCKDYW 727
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 932 bits (2408), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/722 (61%), Positives = 581/722 (80%), Gaps = 4/722 (0%)
Query: 3 TLSQPTKPLTLPTSTAI-SSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPT 61
++ T+ + P+ + +SC +L H+KQ HAQIL+ + N LLLKL+L +LP+
Sbjct: 2 AMAMSTRLIPSPSEKGLLASCKTLRHVKQIHAQILRSKMD--NSNLLLLKLVLCCCTLPS 59
Query: 62 TTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFP 121
+PS+L YALS+FS IP PP+R SN+ +R S P++ L ++L + G +DRFSFP
Sbjct: 60 PSPSALDYALSLFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFP 119
Query: 122 PILKAIARAEGLLEGMQVHGLGTKLGF-GSDPFVQTGLVGMYGACGKILDARLMFDKMSY 180
P+LKA+++ L G+++HGL +K GF +DPF+Q+ L+ MY ACG+I+DAR +FDKMS+
Sbjct: 120 PLLKAVSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSH 179
Query: 181 RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAV 240
RD+V W++MIDGY QN +D VL L+EEMK S EPD ++L +LSAC+ AGNLSYG+A+
Sbjct: 180 RDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAI 239
Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
H+FI DN + +H+Q++L+ MYANCG M +A+ ++D++ K++VVSTAM+SGY++ G V
Sbjct: 240 HQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMV 299
Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
+DAR IFD+MVEKDL+CWSAMISGYAE+ P EAL+LFNEMQ + PD++TMLSVISAC
Sbjct: 300 QDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISAC 359
Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
A++G L QA+ IH Y DKN FG L +NNA+IDMYAKCG+L AREVFE M R+NVISW+
Sbjct: 360 ANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWS 419
Query: 421 SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
SMINAFA+HGDA +A+ F++MK+++I+PNGVTFIGVLYACSHAGLV+EG++ F+SM NE
Sbjct: 420 SMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINE 479
Query: 481 YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEF 540
+ I P+ EHYGCMVDL+ RAN LR+A+EL+ETMPF PNV+IWGSLM+AC+ HGEIEL EF
Sbjct: 480 HRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEF 539
Query: 541 AAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVY 600
AA +LL+L+PDHDGALV+LSNIYAK+KRW DVG +RK MK +G+ KE+ACSRIE+NNEV+
Sbjct: 540 AATRLLELEPDHDGALVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRIEVNNEVH 599
Query: 601 EFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLAL 660
F+ ADR HKQ+D+IY+KL+ V+S+LK GY P LVDLE+EEK+EV+LWHSEKLAL
Sbjct: 600 VFMMADRYHKQSDEIYKKLDAVVSQLKLVGYTPSTSGILVDLEEEEKKEVVLWHSEKLAL 659
Query: 661 CYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKD 720
CYGLI +K+SCIRIVKNLR+CEDCH+F+KLVSKV+ EIV+RDRTRFHH+ G+CSC+D
Sbjct: 660 CYGLIGERKESCIRIVKNLRICEDCHSFMKLVSKVHRIEIVMRDRTRFHHFNGGICSCRD 719
Query: 721 YW 722
YW
Sbjct: 720 YW 721
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 913 bits (2360), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/698 (61%), Positives = 562/698 (80%), Gaps = 4/698 (0%)
Query: 27 HMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSN 86
H+KQ HAQIL + + + N+LL KL L+ +++ SSL+YALS+FSQIP P + SN
Sbjct: 31 HLKQIHAQILHSNTTPENTNTLLSKLALSI-CTLSSSSSSLHYALSVFSQIPNPHTHFSN 89
Query: 87 KFIRAISWSHRPKHALKVF--LKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGT 144
+ +R +S S P+ + ++ L+ +N +DRFSFP +LKA+++ G+++HGL +
Sbjct: 90 QLLRHLSRSSFPEKTIFLYHNLRAIN-AFALDRFSFPSLLKAVSKVSAFNHGLEIHGLAS 148
Query: 145 KLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
KLGF DPF+QTGL+ MY +C +I+DARL+FDKM + D V W+++IDGY QNG +D+ L
Sbjct: 149 KLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALR 208
Query: 205 LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
LFE+M+ S+++PD ++L +LSAC AGNLSYG +HEF+ DN A+D+HLQ+ LI MYA
Sbjct: 209 LFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYA 268
Query: 265 NCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISG 324
NCG MD+A+ ++D + K+L+VSTAM+SGY++ G V+DAR IFDQM+E+DL+CWSAMISG
Sbjct: 269 NCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISG 328
Query: 325 YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384
YAE++ PQEALKLF+EM PD++TMLSVISAC+H+G L QA IH Y+D++ FG
Sbjct: 329 YAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRA 388
Query: 385 LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444
L VNNA+IDMYAKCG+L AREVFE M R+NVISW+SMINAFA+HG+A +A+ F +MK+
Sbjct: 389 LSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKE 448
Query: 445 ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR 504
+I+PNGVTFIGVLYAC HAGLV+EG ++F+SM NE+ I P EHYGCMVDL+ RAN LR
Sbjct: 449 VNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLR 508
Query: 505 EALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564
+A+EL+ETMPFAPNV+IWGSLM+AC+VHGE EL EFAAK+LL+L+PDHDGALV+LSNIYA
Sbjct: 509 KAIELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGALVVLSNIYA 568
Query: 565 KDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVIS 624
K+KRW DVG +RKSM +GI KE+A SRIE+NN+V+ F+ ADR HKQ+D+IYEKL+EV+S
Sbjct: 569 KEKRWNDVGLIRKSMSYKGISKEKASSRIEINNQVHMFMMADRYHKQSDEIYEKLDEVVS 628
Query: 625 ELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCED 684
+LK GY P L+DLE+E+K+E++LWHSEKLA+CYGLIS + +SCIRIVKNLR+CED
Sbjct: 629 KLKLVGYKPSTSGILIDLEEEDKKELVLWHSEKLAVCYGLISRRNESCIRIVKNLRICED 688
Query: 685 CHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
CH+F+KLVSKVY EIV+RDRTRFHH G+CSC+DYW
Sbjct: 689 CHSFMKLVSKVYQIEIVVRDRTRFHHCSGGICSCRDYW 726
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana] gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana] gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 879 bits (2271), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/729 (56%), Positives = 562/729 (77%), Gaps = 24/729 (3%)
Query: 11 LTLP---TSTA-------ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLP 60
+TLP STA +S C SL H+KQ HA IL+ + +H NS L
Sbjct: 1 MTLPPPIASTAANTILEKLSFCKSLNHIKQLHAHILR-TVINHKLNSFLFN------LSV 53
Query: 61 TTTPSSLYYALSIFSQIPAPP-SRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFS 119
+++ +L YAL++FS IP+PP S V N F+R +S S P+ + + ++ + G +D+FS
Sbjct: 54 SSSSINLSYALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFS 113
Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
F PILKA+++ L EGM++HG+ K+ DPFV+TG + MY +CG+I AR +FD+MS
Sbjct: 114 FLPILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMS 173
Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
+RD+V W+ MI+ Y + GL DE LFEEMK SNV PDEM+L I+SAC R GN+ Y A
Sbjct: 174 HRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRA 233
Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
++EF+I+N+V +D HL + L+TMYA GCMDMA+ F K+ ++NL VSTAMVSGYS+ G+
Sbjct: 234 IYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGR 293
Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
++DA++IFDQ +KDL+CW+ MIS Y E+++PQEAL++F EM G+KPD V+M SVISA
Sbjct: 294 LDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISA 353
Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISW 419
CA+LG+LD+A+ +H I N +L +NNA+I+MYAKCG L++ R+VFE+M RRNV+SW
Sbjct: 354 CANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSW 413
Query: 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
+SMINA ++HG+A +AL F +MK E+++PN VTF+GVLY CSH+GLV+EG++IFASMT+
Sbjct: 414 SSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTD 473
Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAE 539
EYNI PK EHYGCMVDLFGRANLLREALE++E+MP A NVVIWGSLM+ACR+HGE+EL +
Sbjct: 474 EYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGK 533
Query: 540 FAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEV 599
FAAK++L+L+PDHDGALVL+SNIYA+++RW+DV +R+ M+E+ + KE+ SRI+ N +
Sbjct: 534 FAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKS 593
Query: 600 YEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLA 659
+EFL D+ HKQ+++IY KL+EV+S+LK AGYVPD S LVD+E+EEK++++LWHSEKLA
Sbjct: 594 HEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLA 653
Query: 660 LCYGLIS----SKKDSC--IRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKD 713
LC+GL++ +KDSC IRIVKNLRVCEDCH F KLVSKVY REI++RDRTRFH YK+
Sbjct: 654 LCFGLMNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKN 713
Query: 714 GVCSCKDYW 722
G+CSC+DYW
Sbjct: 714 GLCSCRDYW 722
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 866 bits (2237), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/731 (56%), Positives = 547/731 (74%), Gaps = 18/731 (2%)
Query: 3 TLSQPTKPLTLPTSTAI----SSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFS 58
TL P + + I S C SL H+KQ HA IL+ +H +
Sbjct: 2 TLPPPRPSFAVSAANTILEKLSFCKSLNHIKQLHAHILRTVINHKLNSF-------LFNL 54
Query: 59 LPTTTPSSLYYALSIFSQI-PAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDR 117
+++ +L YAL++FS I P P S V N +R +S S P+ + + ++ + G DR
Sbjct: 55 SFSSSSINLSYALNLFSSISPLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDR 114
Query: 118 FSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDK 177
SFPPILKA+++ L EGM++HG K+ SDPFV+TGL+ MY ACG+I AR +FD+
Sbjct: 115 ISFPPILKAVSKVSALFEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDE 174
Query: 178 MSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
MS RD+V W+ MI+ Y + GL DE LFEEMK SNV PDEM+L I+SAC R GN+ Y
Sbjct: 175 MSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYN 234
Query: 238 EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRA 297
A+++F+I+N+V +D HL + L+TMYA GCMDMA F K+ ++NL VSTAMVSGYS+A
Sbjct: 235 RAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKA 294
Query: 298 GQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVI 357
G+++DAR+IFDQ KDL+CW+ MIS YAE++HPQEAL++F EM G+KPD VTMLSVI
Sbjct: 295 GRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVI 354
Query: 358 SACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVI 417
SAC +LG LD+A+ +H Y N L ++NA+I+MYAKCG L++AR+VFE+M RNV+
Sbjct: 355 SACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVV 414
Query: 418 SWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASM 477
SW+SMINAFA+HG+A ++L F +MK E+++PN VTF+GVLY CSH+GLV+EG++IFASM
Sbjct: 415 SWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASM 474
Query: 478 TNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIEL 537
T+EYNI PK EHYGCMVDLFGRANLLREALE++E+MP APNVVIWGSLM+ACRVHGE+EL
Sbjct: 475 TDEYNITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACRVHGELEL 534
Query: 538 AEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNN 597
E AAK++L+L+PDHDGALVL+SNIYA++ RW V +R M+++ + KE+ SRI++N
Sbjct: 535 GELAAKRILKLEPDHDGALVLMSNIYAREYRWDYVRIIRWIMEKKKVFKEKGLSRIDLNG 594
Query: 598 EVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEK 657
+ +EFL D+ HKQ+++IY KL EV+S+LK AGYVPD S LVD+E+EEK++++LWHSEK
Sbjct: 595 KSHEFLIGDKRHKQSNEIYTKLYEVVSKLKLAGYVPDGGSVLVDVEEEEKKDLVLWHSEK 654
Query: 658 LALCYGLISSKKD----SC--IRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHY 711
LALC+GL++ +K+ SC IRIVKNLRVCEDCH F KLVSKVY EI++RDRTRFH Y
Sbjct: 655 LALCFGLMNKEKEEEKGSCGVIRIVKNLRVCEDCHAFFKLVSKVYELEIIVRDRTRFHRY 714
Query: 712 KDGVCSCKDYW 722
KDG+CSC+DYW
Sbjct: 715 KDGLCSCRDYW 725
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa] gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/452 (76%), Positives = 398/452 (88%)
Query: 271 MAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNH 330
MA+ LF K+ +NLVV TAM+SGYSR G+VEDARLIFDQM EKDL+CWSAMISGYAE++
Sbjct: 1 MAQKLFTKISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDK 60
Query: 331 PQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNA 390
PQEAL LF+EMQV G+KPD+VT+LSVISACA LGVLD+A+ IH+Y+DKN GG L VNNA
Sbjct: 61 PQEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNA 120
Query: 391 IIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN 450
+IDMYAKCG+L +AR VFE+M+ RNVISWTSMINAFAIHGDA NAL FF +MKDE+I PN
Sbjct: 121 LIDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPN 180
Query: 451 GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELV 510
GVTF+GVLYACSHAGLV+EGR FASMTNE+NI PK+EHYGCMVDLFGRANLLR+ALELV
Sbjct: 181 GVTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELV 240
Query: 511 ETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQ 570
ETMP APNVVIWGSLMAAC++HGE EL EFAAKQ+L+L+PDHDGALV LSNIYAKD+RWQ
Sbjct: 241 ETMPLAPNVVIWGSLMAACQIHGENELGEFAAKQVLELEPDHDGALVQLSNIYAKDRRWQ 300
Query: 571 DVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAG 630
DVGELR MK+RGI KER CSRIE+NN+VYEF+ AD+ HKQ D+IYEKL+EV+ ELK G
Sbjct: 301 DVGELRNLMKQRGISKERGCSRIELNNQVYEFVMADKKHKQADKIYEKLDEVVKELKLVG 360
Query: 631 YVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIK 690
Y P+ S LVD+E+E K+EV+LWHSEKLALCYGL+ K SCIRIVKNLRVCEDCH FIK
Sbjct: 361 YTPNTRSVLVDVEEEGKKEVVLWHSEKLALCYGLMGEGKGSCIRIVKNLRVCEDCHTFIK 420
Query: 691 LVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
LVSKVY EI++RDRTRFHHYK GVCSC DYW
Sbjct: 421 LVSKVYGMEIIVRDRTRFHHYKAGVCSCNDYW 452
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 318/716 (44%), Positives = 453/716 (63%), Gaps = 6/716 (0%)
Query: 7 PTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSS 66
P+ P T P S I +C S+ +KQ H+Q + ++ ++ + +F
Sbjct: 15 PSLPQTPPLSL-IKTCKSMAQLKQIHSQTICTG----LISNPIVPAQIIAFCCKHEL-GD 68
Query: 67 LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
+ YA +F +P P V N I+ S P A+ ++ +ML G+ D +++P +LK
Sbjct: 69 MEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKR 128
Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
R + G ++H KLGF S+ FVQ L+ +Y G++ AR +FD+ S D+V W
Sbjct: 129 FTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTW 188
Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
+VMI GY ++ FDE + LF+EM+ V P + L +LSACS+ +L+ G+ VH ++ D
Sbjct: 189 NVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKD 248
Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
+ L++ LI MYA CG MD A G+FD + ++++ TA+V+G++ GQV AR
Sbjct: 249 LKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNY 308
Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
FD+M E+D + W+AMI GY + N +E L LF EMQ +KPD+ TM+S+++ACAHLG L
Sbjct: 309 FDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGAL 368
Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
+ + I YIDKN D V NA+IDMY CG++E A +F M R+ ISWT++I
Sbjct: 369 ELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGL 428
Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
AI+G AL F++M SI P+ VT IGVL AC+H+G+VD+G++ FA MT ++ I P
Sbjct: 429 AINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPN 488
Query: 487 YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL 546
HYGCMVDL GRA L+EA E+++ MP PN ++WGSL+ ACRVH + E+AE AA+Q+L
Sbjct: 489 VAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQIL 548
Query: 547 QLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTAD 606
+L+P++ VLL NIYA RW+ + E+RK M +RGI K CS IEMN V+EF+ D
Sbjct: 549 ELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFVAGD 608
Query: 607 RSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLIS 666
+ H Q+ +IY KL+E+ +LK AGY PD +D+ +EEK + HSEKLA+ +GLIS
Sbjct: 609 QVHPQSKEIYSKLDEMSVDLKFAGYSPDTSEVFLDIGEEEKESAVYRHSEKLAIAFGLIS 668
Query: 667 SKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
S IRIVKNLR+C DCH KLVSKVY RE+++RDRTRFHH++ G CSCKDYW
Sbjct: 669 SGPGVTIRIVKNLRMCVDCHYVAKLVSKVYNREVIVRDRTRFHHFRHGSCSCKDYW 724
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 630 bits (1626), Expect = e-178, Method: Compositional matrix adjust.
Identities = 313/722 (43%), Positives = 449/722 (62%), Gaps = 9/722 (1%)
Query: 1 MSTLSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLP 60
+ + S PT PL + + +C S+ ++Q H Q +K + N +L ++T
Sbjct: 11 LKSFSPPTHPLI----SLLETCESMDQLQQVHCQAIK---KGLNANPVLQNRVMTFCC-- 61
Query: 61 TTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSF 120
T YA +F +IP P + N IR S P+ + ++L+ML G+ DR++F
Sbjct: 62 THEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTF 121
Query: 121 PPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY 180
P + K R L G Q+HG K G + FV T LV MY CG++ AR +FD
Sbjct: 122 PFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPK 181
Query: 181 RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAV 240
D++ W+++I Y + G F+E LF M+ V P + L +LSACS+ +L G+ V
Sbjct: 182 ADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKV 241
Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
H ++ + V + L++ +I MYA+CG MD A G+F + ++++ T +VSG++ G++
Sbjct: 242 HSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEI 301
Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
+ AR FD+M EKD + W+AMI GY +N +EAL+LF MQ +KPD+ TM+SV++AC
Sbjct: 302 DVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTAC 361
Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
AHLG L+ + I YID+N DL V NA+IDMY KCG ++ A +F M +R+ +WT
Sbjct: 362 AHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWT 421
Query: 421 SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
+MI A++G AL F+ M SI P+ +T+IGVL AC+H GLVD+GR+ F MT++
Sbjct: 422 AMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQ 481
Query: 481 YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEF 540
+ I P HYGC+VDL RA L+EA E++E MP N ++WG+L+A CRV+ E ++AE
Sbjct: 482 HGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEM 541
Query: 541 AAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVY 600
KQ+L+L+PD+ VLL NIYA KRW D+ ELR+ M ++GI K CS IEMN V+
Sbjct: 542 VVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVH 601
Query: 601 EFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLAL 660
EF+ DRSH QT I KL+++ +LK AGY PDI +D+ +E+K + HSEKLA+
Sbjct: 602 EFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAI 661
Query: 661 CYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKD 720
+GLI+S IRI KNLR+C DCHN KLVSKVY RE+++RDRTRFHH+K G+CSCKD
Sbjct: 662 AFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKD 721
Query: 721 YW 722
YW
Sbjct: 722 YW 723
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g15930-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust.
Identities = 313/722 (43%), Positives = 449/722 (62%), Gaps = 9/722 (1%)
Query: 1 MSTLSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLP 60
+ + S PT PL + + +C S+ ++Q H Q +K + N +L ++T
Sbjct: 32 LKSFSPPTHPLI----SLLETCESMDQLQQVHCQAIK---KGLNANPVLQNRVMTFCC-- 82
Query: 61 TTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSF 120
T YA +F +IP P + N IR S P+ + ++L+ML G+ DR++F
Sbjct: 83 THEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTF 142
Query: 121 PPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY 180
P + K R L G Q+HG K G + FV T LV MY CG++ AR +FD
Sbjct: 143 PFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPK 202
Query: 181 RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAV 240
D++ W+++I Y + G F+E LF M+ V P + L +LSACS+ +L G+ V
Sbjct: 203 ADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKV 262
Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
H ++ + V + L++ +I MYA+CG MD A G+F + ++++ T +VSG++ G++
Sbjct: 263 HSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEI 322
Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
+ AR FD+M EKD + W+AMI GY +N +EAL+LF MQ +KPD+ TM+SV++AC
Sbjct: 323 DVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTAC 382
Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
AHLG L+ + I YID+N DL V NA+IDMY KCG ++ A +F M +R+ +WT
Sbjct: 383 AHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWT 442
Query: 421 SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
+MI A++G AL F+ M SI P+ +T+IGVL AC+H GLVD+GR+ F MT++
Sbjct: 443 AMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQ 502
Query: 481 YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEF 540
+ I P HYGC+VDL RA L+EA E++E MP N ++WG+L+A CRV+ E ++AE
Sbjct: 503 HGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEM 562
Query: 541 AAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVY 600
KQ+L+L+PD+ VLL NIYA KRW D+ ELR+ M ++GI K CS IEMN V+
Sbjct: 563 VVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVH 622
Query: 601 EFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLAL 660
EF+ DRSH QT I KL+++ +LK AGY PDI +D+ +E+K + HSEKLA+
Sbjct: 623 EFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAI 682
Query: 661 CYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKD 720
+GLI+S IRI KNLR+C DCHN KLVSKVY RE+++RDRTRFHH+K G+CSCKD
Sbjct: 683 AFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKD 742
Query: 721 YW 722
YW
Sbjct: 743 YW 744
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa] gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust.
Identities = 311/722 (43%), Positives = 444/722 (61%), Gaps = 14/722 (1%)
Query: 6 QPTKPLTLPTSTAISSCSSLTHMKQTHAQILK--LSHSHHSQNSLLLKLLLTSFSLPTTT 63
Q + P T+P I C++ H+KQ HA +L+ L S L L+S
Sbjct: 26 QKSNPSTVPI--LIDKCANKKHLKQLHAHMLRTGLFFDPPSATKLFTACALSS------- 76
Query: 64 PSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI-DRFSFPP 122
PSSL YA +F QIP P N IRA + S +P L VF++ML+E + ++FP
Sbjct: 77 PSSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPF 136
Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
++KA LL G +HG+ K FGSD F+ L+ Y + G + A L+F K+ +D
Sbjct: 137 VIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKD 196
Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
IV W+ MI G+ Q G +E L LF+ MKM N P+ + + +LSAC++ +L +G +
Sbjct: 197 IVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACD 256
Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
+I N + ++ L + ++ MY CG ++ A+ LFDK+ K++V T M+ GY++ G +
Sbjct: 257 YIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDA 316
Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC-GMKPDKVTMLSVISACA 361
AR +FD M +D+ W+A+IS Y +N P+EAL +F E+Q+ KP++VT+ S ++ACA
Sbjct: 317 ARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACA 376
Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTS 421
LG +D IH+YI K + + ++IDMY+KCG LE A EVF + RR+V W++
Sbjct: 377 QLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSA 436
Query: 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481
MI A+HG R A+ F+KM++ + PN VTF +L ACSH+GLVDEGR F M Y
Sbjct: 437 MIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVY 496
Query: 482 NIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFA 541
+ P +HY CMVD+ GRA L EA+EL+E MP P+ +WG+L+ ACR++G +ELAE A
Sbjct: 497 GVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMA 556
Query: 542 AKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYE 601
+LL+ D ++ GA VLLSNIYAK +W V LR+ MK G+ KE CS IE+N ++E
Sbjct: 557 CSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNGIIHE 616
Query: 602 FLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVIL-WHSEKLAL 660
FL D SH + +IY KL+E+++ +K GYV D L +E+E +E L HSEKLA+
Sbjct: 617 FLVGDNSHPLSTEIYSKLDEIVARIKSTGYVSDESHLLQFVEEEYMKEHALNLHSEKLAI 676
Query: 661 CYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKD 720
YGLI + IRIVKNLRVC DCH+ KL+SK+Y R+I++RDR RFHH+ G CSC D
Sbjct: 677 AYGLIRMEPSQPIRIVKNLRVCGDCHSVAKLISKLYNRDILLRDRYRFHHFSGGNCSCMD 736
Query: 721 YW 722
YW
Sbjct: 737 YW 738
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 722 | ||||||
| TAIR|locus:2130354 | 722 | AT4G14820 "AT4G14820" [Arabido | 0.965 | 0.965 | 0.565 | 1.3e-226 | |
| TAIR|locus:2060640 | 738 | OTP81 "ORGANELLE TRANSCRIPT PR | 0.987 | 0.966 | 0.398 | 3.6e-153 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.897 | 0.874 | 0.406 | 3.9e-140 | |
| TAIR|locus:2038603 | 868 | AT2G27610 "AT2G27610" [Arabido | 0.610 | 0.508 | 0.444 | 1.4e-135 | |
| TAIR|locus:2119440 | 1064 | AT4G13650 [Arabidopsis thalian | 0.608 | 0.412 | 0.426 | 6.9e-130 | |
| TAIR|locus:2154855 | 620 | AT5G66520 "AT5G66520" [Arabido | 0.829 | 0.966 | 0.407 | 1.3e-125 | |
| TAIR|locus:2055919 | 786 | AT2G22070 "AT2G22070" [Arabido | 0.782 | 0.718 | 0.411 | 2.1e-123 | |
| TAIR|locus:2126352 | 632 | AT4G37380 [Arabidopsis thalian | 0.833 | 0.952 | 0.390 | 2.1e-123 | |
| TAIR|locus:2125899 | 990 | AT4G33170 [Arabidopsis thalian | 0.644 | 0.469 | 0.400 | 4e-123 | |
| TAIR|locus:4010713895 | 595 | AT4G21065 "AT4G21065" [Arabido | 0.696 | 0.845 | 0.442 | 4.6e-121 |
| TAIR|locus:2130354 AT4G14820 "AT4G14820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2187 (774.9 bits), Expect = 1.3e-226, P = 1.3e-226
Identities = 402/711 (56%), Positives = 542/711 (76%)
Query: 19 ISSCSSLTHMKQTHAQIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYYALSIFSQIP 78
+S C SL H+KQ HA I YAL++FS IP
Sbjct: 19 LSFCKSLNHIKQLHAHILRTVINHKLNSFLFNLSVSSSSINLS-------YALNVFSSIP 71
Query: 79 APP-SRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGM 137
+PP S V N F+R +S S P+ + + ++ + G +D+FSF PILKA+++ L EGM
Sbjct: 72 SPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGM 131
Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
++HG+ K+ DPFV+TG + MY +CG+I AR +FD+MS+RD+V W+ MI+ Y + G
Sbjct: 132 ELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFG 191
Query: 198 LFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQS 257
L DE LFEEMK SNV PDEM+L I+SAC R GN+ Y A++EF+I+N+V +D HL +
Sbjct: 192 LVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLT 251
Query: 258 TLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLIC 317
L+TMYA GCMDMA+ F K+ ++NL VSTAMVSGYS+ G+++DA++IFDQ +KDL+C
Sbjct: 252 ALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVC 311
Query: 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377
W+ MIS Y E+++PQEAL++F EM G+KPD V+M SVISACA+LG+LD+A+ +H I
Sbjct: 312 WTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIH 371
Query: 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALI 437
N +L +NNA+I+MYAKCG L++ R+VFE+M RRNV+SW+SMINA ++HG+A +AL
Sbjct: 372 VNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALS 431
Query: 438 FFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLF 497
F +MK E+++PN VTF+GVLY CSH+GLV+EG++IFASMT+EYNI PK EHYGCMVDLF
Sbjct: 432 LFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLF 491
Query: 498 GRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALV 557
GRANLLREALE++E+MP A NVVIWGSLM+ACR+HGE+EL +FAAK++L+L+PDHDGALV
Sbjct: 492 GRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALV 551
Query: 558 LLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYE 617
L+SNIYA+++RW+DV +R+ M+E+ + KE+ SRI+ N + +EFL D+ HKQ+++IY
Sbjct: 552 LMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYA 611
Query: 618 KLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKK----DSC- 672
KL+EV+S+LK AGYVPD S LVD+E+EEK++++LWHSEKLALC+GL++ +K DSC
Sbjct: 612 KLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCG 671
Query: 673 -IRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
IRIVKNLRVCEDCH F KLVSKVY REI++RDRTRFH YK+G+CSC+DYW
Sbjct: 672 VIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722
|
|
| TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1494 (531.0 bits), Expect = 3.6e-153, P = 3.6e-153
Identities = 289/725 (39%), Positives = 441/725 (60%)
Query: 5 SQPTKPLTLPTSTA----ISSCSSLTHMKQTHAQIXXXXXXXXXXXXXXXXXXXXXXXXX 60
S P +P T + I C SL +KQTH +
Sbjct: 19 SNPNQPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFA 78
Query: 61 XXXXXXXYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI-DRFS 119
YA +F +IP P S N IRA + P ++ FL M++E ++++
Sbjct: 79 SLE-----YARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYT 133
Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
FP ++KA A L G +HG+ K GSD FV L+ Y +CG + A +F +
Sbjct: 134 FPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIK 193
Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
+D+V W+ MI+G+ Q G D+ L LF++M+ +V+ + + +LSAC++ NL +G
Sbjct: 194 EKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQ 253
Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
V +I +N V ++ L + ++ MY CG ++ AK LFD + K+ V T M+ GY+ +
Sbjct: 254 VCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISED 313
Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC-GMKPDKVTMLSVIS 358
E AR + + M +KD++ W+A+IS Y +N P EAL +F+E+Q+ MK +++T++S +S
Sbjct: 314 YEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLS 373
Query: 359 ACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS 418
ACA +G L+ + IH YI K+ + V +A+I MY+KCG LE +REVF + +R+V
Sbjct: 374 ACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFV 433
Query: 419 WTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMT 478
W++MI A+HG A+ F KM++ ++ PNGVTF V ACSH GLVDE +F M
Sbjct: 434 WSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQME 493
Query: 479 NEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
+ Y I P+ +HY C+VD+ GR+ L +A++ +E MP P+ +WG+L+ AC++H + LA
Sbjct: 494 SNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLA 553
Query: 539 EFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNE 598
E A +LL+L+P +DGA VLLSNIYAK +W++V ELRK M+ G+ KE CS IE++
Sbjct: 554 EMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGM 613
Query: 599 VYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVIL-WHSEK 657
++EFL+ D +H ++++Y KL+EV+ +LK GY P+I L +E+EE +E L HSEK
Sbjct: 614 IHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEK 673
Query: 658 LALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCS 717
LA+CYGLIS++ IR++KNLRVC DCH+ KL+S++Y REI++RDR RFHH+++G CS
Sbjct: 674 LAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCS 733
Query: 718 CKDYW 722
C D+W
Sbjct: 734 CNDFW 738
|
|
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1371 (487.7 bits), Expect = 3.9e-140, P = 3.9e-140
Identities = 269/662 (40%), Positives = 414/662 (62%)
Query: 69 YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
YA+S+F I P + N R + S P ALK+++ M++ GL + ++FP +LK+ A
Sbjct: 86 YAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCA 145
Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
+++ EG Q+HG KLG D +V T L+ MY G++ DA +FDK +RD+V ++
Sbjct: 146 KSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTA 205
Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEF--IID 246
+I GY G + LF+E+ + +V + + ++S + GN Y EA+ F ++
Sbjct: 206 LIKGYASRGYIENAQKLFDEIPVKDV----VSWNAMISGYAETGN--YKEALELFKDMMK 259
Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLF----DKVLLKNLVVSTAMVSGYSRAGQVED 302
NV D T+++ A G +++ + + D NL + A++ YS+ G++E
Sbjct: 260 TNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELET 319
Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
A +F+++ KD+I W+ +I GY N +EAL LF EM G P+ VTMLS++ ACAH
Sbjct: 320 ACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAH 379
Query: 363 LGVLDQAQRIHLYIDKNAFG--GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
LG +D + IH+YIDK G + ++IDMYAKCG +E+A +VF + +++ SW
Sbjct: 380 LGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWN 439
Query: 421 SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
+MI FA+HG A + F++M+ I P+ +TF+G+L ACSH+G++D GR IF +MT +
Sbjct: 440 AMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQD 499
Query: 481 YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEF 540
Y + PK EHYGCM+DL G + L +EA E++ M P+ VIW SL+ AC++HG +EL E
Sbjct: 500 YKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGES 559
Query: 541 AAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVY 600
A+ L++++P++ G+ VLLSNIYA RW +V + R + ++G+ K CS IE+++ V+
Sbjct: 560 FAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVH 619
Query: 601 EFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLAL 660
EF+ D+ H + +IY L E+ L+ AG+VPD L ++E+E K + HSEKLA+
Sbjct: 620 EFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAI 679
Query: 661 CYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKD 720
+GLIS+K + + IVKNLRVC +CH KL+SK+Y REI+ RDRTRFHH++DGVCSC D
Sbjct: 680 AFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCND 739
Query: 721 YW 722
YW
Sbjct: 740 YW 741
|
|
| TAIR|locus:2038603 AT2G27610 "AT2G27610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1056 (376.8 bits), Expect = 1.4e-135, Sum P(2) = 1.4e-135
Identities = 197/443 (44%), Positives = 290/443 (65%)
Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM 341
++ V TA++ Y + G+VE+A +F + +KD++ WSAM++GYA+ + A+K+F E+
Sbjct: 426 RSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGEL 485
Query: 342 QVCGMKPDKVTMLSVISACAHLGV-LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
G+KP++ T S+++ CA + Q ++ H + K+ L V++A++ MYAK G+
Sbjct: 486 TKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGN 545
Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
+ESA EVF+R R ++++SW SMI+ +A HG A AL F +MK + +GVTFIGV A
Sbjct: 546 IESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAA 605
Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
C+HAGLV+EG + F M + I P EH CMVDL+ RA L +A++++E MP
Sbjct: 606 CTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGST 665
Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
IW +++AACRVH + EL AA++++ + P+ A VLLSN+YA+ WQ+ ++RK M
Sbjct: 666 IWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMN 725
Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV 640
ER + KE S IE+ N+ Y FL DRSH DQIY KL ++ + LK GY PD L
Sbjct: 726 ERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQ 785
Query: 641 DLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
D++DE K V+ HSE+LA+ +GLI++ K S + I+KNLRVC DCH IKL++K+ REI
Sbjct: 786 DIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREI 845
Query: 701 VIRDRTRFHHYK-DGVCSCKDYW 722
V+RD RFHH+ DGVCSC D+W
Sbjct: 846 VVRDSNRFHHFSSDGVCSCGDFW 868
|
|
| TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 991 (353.9 bits), Expect = 6.9e-130, Sum P(2) = 6.9e-130
Identities = 188/441 (42%), Positives = 278/441 (63%)
Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
+L A+V+ YSR G++E++ L F+Q D I W+A++SG+ ++ + +EAL++F M
Sbjct: 625 DLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMN 684
Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLE 402
G+ + T S + A + + Q +++H I K + + V NA+I MYAKCGS+
Sbjct: 685 REGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSIS 744
Query: 403 SAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS 462
A + F + +N +SW ++INA++ HG AL F++M ++ PN VT +GVL ACS
Sbjct: 745 DAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACS 804
Query: 463 HAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIW 522
H GLVD+G F SM +EY + PK EHY C+VD+ RA LL A E ++ MP P+ ++W
Sbjct: 805 HIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVW 864
Query: 523 GSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGEL-RKSMKE 581
+L++AC VH +E+ EFAA LL+L+P+ VLLSN+YA K+W D +L R+ MKE
Sbjct: 865 RTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKW-DARDLTRQKMKE 923
Query: 582 RGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVD 641
+G+ KE S IE+ N ++ F D++H D+I+E ++ GYV D S L +
Sbjct: 924 KGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNE 983
Query: 642 LEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIV 701
L+ E+K +I HSEKLA+ +GL+S I ++KNLRVC DCH +IK VSKV REI+
Sbjct: 984 LQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREII 1043
Query: 702 IRDRTRFHHYKDGVCSCKDYW 722
+RD RFHH++ G CSCKDYW
Sbjct: 1044 VRDAYRFHHFEGGACSCKDYW 1064
|
|
| TAIR|locus:2154855 AT5G66520 "AT5G66520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1234 (439.4 bits), Expect = 1.3e-125, P = 1.3e-125
Identities = 246/603 (40%), Positives = 363/603 (60%)
Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG--MYGACGKILD-ARLMFDKMSY 180
+ + R E Q+H K G D + T + + L A+++FD
Sbjct: 18 MSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDR 77
Query: 181 RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAV 240
D W++MI G+ + + L L++ M S+ + +L ACS +
Sbjct: 78 PDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQI 137
Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
H I D + ++LI YA G +A LFD++ + V +++ GY +AG++
Sbjct: 138 HAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKM 197
Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
+ A +F +M EK+ I W+ MISGY + + +EAL+LF+EMQ ++PD V++ + +SAC
Sbjct: 198 DIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSAC 257
Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
A LG L+Q + IH Y++K D + +IDMYAKCG +E A EVF+ +++++V +WT
Sbjct: 258 AQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWT 317
Query: 421 SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
++I+ +A HG R A+ F +M+ I PN +TF VL ACS+ GLV+EG+ IF SM +
Sbjct: 318 ALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERD 377
Query: 481 YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEF 540
YN+ P EHYGC+VDL GRA LL EA ++ MP PN VIWG+L+ ACR+H IEL E
Sbjct: 378 YNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEE 437
Query: 541 AAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVY 600
+ L+ +DP H G V +NI+A DK+W E R+ MKE+G+ K CS I + +
Sbjct: 438 IGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTH 497
Query: 601 EFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILW-HSEKLA 659
EFL DRSH + ++I K + +L+ GYVP++ L+DL D+++RE I+ HSEKLA
Sbjct: 498 EFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLA 557
Query: 660 LCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCK 719
+ YGLI +K + IRI+KNLRVC+DCH KL+SK+Y R+IV+RDRTRFHH++DG CSC
Sbjct: 558 ITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCG 617
Query: 720 DYW 722
DYW
Sbjct: 618 DYW 620
|
|
| TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1213 (432.1 bits), Expect = 2.1e-123, P = 2.1e-123
Identities = 234/569 (41%), Positives = 362/569 (63%)
Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM-KMSNVEP 216
++ ++ G++ A F++M+ RDIV W+ MI G+ Q G L++F +M + S + P
Sbjct: 218 MIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSP 277
Query: 217 DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF 276
D L+ +LSAC+ L G+ +H I+ + + + LI+MY+ CG ++ A+ L
Sbjct: 278 DRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLI 337
Query: 277 DKVLLKNLVVS--TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEA 334
++ K+L + TA++ GY + G + A+ IF + ++D++ W+AMI GY ++ EA
Sbjct: 338 EQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEA 397
Query: 335 LKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDM 394
+ LF M G +P+ T+ +++S + L L ++IH K+ + V+NA+I M
Sbjct: 398 INLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITM 457
Query: 395 YAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT 453
YAK G++ SA F+ +R R+ +SWTSMI A A HG A AL F M E + P+ +T
Sbjct: 458 YAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHIT 517
Query: 454 FIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513
++GV AC+HAGLV++GR+ F M + I P HY CMVDLFGRA LL+EA E +E M
Sbjct: 518 YVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKM 577
Query: 514 PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVG 573
P P+VV WGSL++ACRVH I+L + AA++LL L+P++ GA L+N+Y+ +W++
Sbjct: 578 PIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAA 637
Query: 574 ELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVP 633
++RKSMK+ + KE+ S IE+ ++V+ F D +H + ++IY + ++ E+K GYVP
Sbjct: 638 KIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVP 697
Query: 634 DIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVS 693
D S L DLE+E K +++ HSEKLA+ +GLIS+ + +RI+KNLRVC DCH IK +S
Sbjct: 698 DTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFIS 757
Query: 694 KVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
K+ REI++RD TRFHH+KDG CSC+DYW
Sbjct: 758 KLVGREIIVRDTTRFHHFKDGFCSCRDYW 786
|
|
| TAIR|locus:2126352 AT4G37380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1213 (432.1 bits), Expect = 2.1e-123, P = 2.1e-123
Identities = 240/614 (39%), Positives = 381/614 (62%)
Query: 117 RFSFPPILKA---IARAEGLLEGMQVHGLGTK---LGFGSDPFVQTGLVGMYGACGKILD 170
RF PP K I +++ + E +Q+H + L P + L Y + GKI
Sbjct: 23 RFRLPPPEKLAVLIDKSQSVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRH 82
Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR 230
+ +F + D+ ++ I+ NGL D+ L+ ++ S + P+E S +L +CS
Sbjct: 83 SLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCST 142
Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
G+ +H ++ + +D ++ + L+ +YA G + A+ +FD++ ++LV STAM
Sbjct: 143 KS----GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAM 198
Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGM-KPD 349
++ Y++ G VE AR +FD M E+D++ W+ MI GYA++ P +AL LF ++ G KPD
Sbjct: 199 ITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPD 258
Query: 350 KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409
++T+++ +SAC+ +G L+ + IH+++ + +++V +IDMY+KCGSLE A VF
Sbjct: 259 EITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFN 318
Query: 410 RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD-ESIDPNGVTFIGVLYACSHAGLVD 468
R+++++W +MI +A+HG +++AL FN+M+ + P +TFIG L AC+HAGLV+
Sbjct: 319 DTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVN 378
Query: 469 EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
EG IF SM EY I PK EHYGC+V L GRA L+ A E ++ M + V+W S++ +
Sbjct: 379 EGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGS 438
Query: 529 CRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKER 588
C++HG+ L + A+ L+ L+ + G VLLSNIYA ++ V ++R MKE+GI+KE
Sbjct: 439 CKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEP 498
Query: 589 ACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKR 648
S IE+ N+V+EF DR H ++ +IY L ++ +K GYVP+ ++ L DLE+ EK
Sbjct: 499 GISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKE 558
Query: 649 EVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRF 708
+ + HSE+LA+ YGLIS+K S ++I KNLRVC DCH KL+SK+ R+IV+RDR RF
Sbjct: 559 QSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRF 618
Query: 709 HHYKDGVCSCKDYW 722
HH+ DG CSC D+W
Sbjct: 619 HHFTDGSCSCGDFW 632
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| TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 978 (349.3 bits), Expect = 4.0e-123, Sum P(2) = 4.0e-123
Identities = 189/472 (40%), Positives = 293/472 (62%)
Query: 258 TLITMYANCG---CMDMAKGLFDKVLLK----NLVVSTAMVSGYSRAGQVEDARLIFDQM 310
TL T++ CG ++ K + + +L VS+ ++ Y + G + A+ FD +
Sbjct: 519 TLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSI 578
Query: 311 VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQ 370
D + W+ MISG EN + A +F++M++ G+ PD+ T+ ++ A + L L+Q +
Sbjct: 579 PVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGR 638
Query: 371 RIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHG 430
+IH K D V +++DMYAKCGS++ A +F+R+ N+ +W +M+ A HG
Sbjct: 639 QIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHG 698
Query: 431 DARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY 490
+ + L F +MK I P+ VTFIGVL ACSH+GLV E + SM +Y I P+ EHY
Sbjct: 699 EGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHY 758
Query: 491 GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDP 550
C+ D GRA L+++A L+E+M + ++ +L+AACRV G+ E + A +LL+L+P
Sbjct: 759 SCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEP 818
Query: 551 DHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHK 610
A VLLSN+YA +W ++ R MK + K+ S IE+ N+++ F+ DRS++
Sbjct: 819 LDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNR 878
Query: 611 QTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKD 670
QT+ IY K+ ++I ++K GYVP+ LVD+E+EEK + +HSEKLA+ +GL+S+
Sbjct: 879 QTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPS 938
Query: 671 SCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
+ IR++KNLRVC DCHN +K ++KVY REIV+RD RFH +KDG+CSC DYW
Sbjct: 939 TPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990
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| TAIR|locus:4010713895 AT4G21065 "AT4G21065" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1191 (424.3 bits), Expect = 4.6e-121, P = 4.6e-121
Identities = 225/509 (44%), Positives = 330/509 (64%)
Query: 220 VLSKILSACSRAGN-LSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
+ + ++ + GN +S E + V D H LI + + + +
Sbjct: 87 IWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSV 146
Query: 279 VLLKN----LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEA 334
V+ + V +++ Y+ G V A +FD+M EKDL+ W+++I+G+AEN P+EA
Sbjct: 147 VIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEA 206
Query: 335 LKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDM 394
L L+ EM G+KPD T++S++SACA +G L +R+H+Y+ K +L +N ++D+
Sbjct: 207 LALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDL 266
Query: 395 YAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD-ESIDPNGVT 453
YA+CG +E A+ +F+ M +N +SWTS+I A++G + A+ F M+ E + P +T
Sbjct: 267 YARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEIT 326
Query: 454 FIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513
F+G+LYACSH G+V EG E F M EY I P+ EH+GCMVDL RA +++A E +++M
Sbjct: 327 FVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSM 386
Query: 514 PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVG 573
P PNVVIW +L+ AC VHG+ +LAEFA Q+LQL+P+H G VLLSN+YA ++RW DV
Sbjct: 387 PMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQ 446
Query: 574 ELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVP 633
++RK M G+ K S +E+ N V+EFL D+SH Q+D IY KL E+ L+ GYVP
Sbjct: 447 KIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVP 506
Query: 634 DIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVS 693
I + VD+E+EEK +++HSEK+A+ + LIS+ + S I +VKNLRVC DCH IKLVS
Sbjct: 507 QISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVS 566
Query: 694 KVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
KVY REIV+RDR+RFHH+K+G CSC+DYW
Sbjct: 567 KVYNREIVVRDRSRFHHFKNGSCSCQDYW 595
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O23337 | PP311_ARATH | No assigned EC number | 0.5679 | 0.9764 | 0.9764 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00020010001 | SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (727 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 722 | |||
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-153 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-148 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-82 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-62 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-37 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-34 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-21 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 2e-19 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-15 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.003 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 460 bits (1185), Expect = e-153
Identities = 210/649 (32%), Positives = 360/649 (55%), Gaps = 33/649 (5%)
Query: 75 SQIPAPPSRVSNKFIRAISWSHRPKHALKVF-LKMLNEGLTIDRFSFPPILKAIARAEGL 133
+QI + ++ I + R + AL++F + T+ ++ +++A + +
Sbjct: 81 TQIRKSGVSLCSQ-IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSI 139
Query: 134 LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGY 193
V+ GF D ++ ++ M+ CG ++DAR +FD+M R++ W +I G
Sbjct: 140 RCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGL 199
Query: 194 FQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDA 253
G + E LF EM + + +L A + G+ G+ +H ++ V D
Sbjct: 200 VDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD- 258
Query: 254 HLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK 313
+ +C +DM YS+ G +EDAR +FD M EK
Sbjct: 259 --------TFVSCALIDM----------------------YSKCGDIEDARCVFDGMPEK 288
Query: 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIH 373
+ W++M++GYA + + +EAL L+ EM+ G+ D+ T +I + L +L+ A++ H
Sbjct: 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAH 348
Query: 374 LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDAR 433
+ + F D+ N A++D+Y+K G +E AR VF+RM R+N+ISW ++I + HG
Sbjct: 349 AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGT 408
Query: 434 NALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCM 493
A+ F +M E + PN VTF+ VL AC ++GL ++G EIF SM+ + I P+ HY CM
Sbjct: 409 KAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468
Query: 494 VDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD 553
++L GR LL EA ++ PF P V +W +L+ ACR+H +EL AA++L + P+
Sbjct: 469 IELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKL 528
Query: 554 GALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTD 613
V+L N+Y R + ++ +++K +G+ AC+ IE+ + + F + DR H Q+
Sbjct: 529 NNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSR 588
Query: 614 QIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCI 673
+IY+KL+E++ E+ GYV + + L D++++E++ +HSEKLA+ +GLI++ + + +
Sbjct: 589 EIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPL 648
Query: 674 RIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
+I ++ R+C+DCH IK ++ V REIV+RD +RFHH+K G CSC DYW
Sbjct: 649 QITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 453 bits (1167), Expect = e-148
Identities = 221/625 (35%), Positives = 349/625 (55%), Gaps = 46/625 (7%)
Query: 102 LKVFLKMLNEGLTIDRFSFPPI--LKAIARAEGLLE----GMQVHGLGTKLGFGSDPFVQ 155
L++F M L++D P + + ++ A LL G ++HG K GF D V
Sbjct: 273 LELFFTMR--ELSVD----PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVC 326
Query: 156 TGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE 215
L+ MY + G +A +F +M +D V W+ MI GY +NGL D+ L + M+ NV
Sbjct: 327 NSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS 386
Query: 216 PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275
PDE+ ++ +LSAC+ G+L G +HE + + + LI MY+ C C+D A
Sbjct: 387 PDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA--- 443
Query: 276 FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
+E +F + EKD+I W+++I+G NN EAL
Sbjct: 444 ------------------------LE----VFHNIPEKDVISWTSIIAGLRLNNRCFEAL 475
Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395
F +M + +KP+ VT+++ +SACA +G L + IH ++ + G D + NA++D+Y
Sbjct: 476 IFFRQM-LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534
Query: 396 AKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFI 455
+CG + A F ++V+SW ++ + HG A+ FN+M + ++P+ VTFI
Sbjct: 535 VRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593
Query: 456 GVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPF 515
+L ACS +G+V +G E F SM +Y+I P +HY C+VDL GRA L EA + MP
Sbjct: 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPI 653
Query: 516 APNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGEL 575
P+ +WG+L+ ACR+H +EL E AA+ + +LDP+ G +LL N+YA +W +V +
Sbjct: 654 TPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARV 713
Query: 576 RKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDI 635
RK+M+E G+ + CS +E+ +V+ FLT D SH Q +I L ++K +G
Sbjct: 714 RKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSE 773
Query: 636 HSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKV 695
S++ ++E K ++ HSE+LA+ +GLI++ I + KNL +CE+CHN +K +SK+
Sbjct: 774 SSSMDEIE-VSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKI 832
Query: 696 YAREIVIRDRTRFHHYKDGVCSCKD 720
REI +RD +FHH+KDG CSC D
Sbjct: 833 VRREISVRDTEQFHHFKDGECSCGD 857
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Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 278 bits (713), Expect = 3e-82
Identities = 158/519 (30%), Positives = 252/519 (48%), Gaps = 57/519 (10%)
Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
AL ++ +ML G+ D ++FP +L+ L G +VH + GF D V L+
Sbjct: 171 ALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALIT 230
Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
MY CG ++ ARL+FD+M RD + W+ MI GYF+NG E L LF M+ +V+PD M
Sbjct: 231 MYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMT 290
Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
++ ++SAC G+ G +H +++ A+D + ++LI MY + G
Sbjct: 291 ITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWG---------- 340
Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
+A +F +M KD + W+AMISGY +N P +AL+ +
Sbjct: 341 ---------------------EAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYAL 379
Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
M+ + PD++T+ SV+SACA LG LD ++H ++ + V NA+I+MY+KC
Sbjct: 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439
Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
++ A EVF + ++VISWTS+I ++ ALIFF +M ++ PN VT I L A
Sbjct: 440 IDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSA 498
Query: 461 CSHAGLVDEGREIFA-----SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPF 515
C+ G + G+EI A + + +P ++DL+ R + A +
Sbjct: 499 CARIGALMCGKEIHAHVLRTGIGFDGFLP------NALLDLYVRCGRMNYAWNQFNSH-- 550
Query: 516 APNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD--PDHDGALVLLSNIYAKDKRWQDVG 573
+VV W L+ HG+ +A ++++ PD + LL ++
Sbjct: 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC-SRSGMVTQGL 609
Query: 574 ELRKSMKER-GI---LKERAC-----SRIEMNNEVYEFL 603
E SM+E+ I LK AC R E Y F+
Sbjct: 610 EYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFI 648
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 224 bits (572), Expect = 1e-62
Identities = 139/480 (28%), Positives = 227/480 (47%), Gaps = 58/480 (12%)
Query: 85 SNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHG--- 141
SN +RA+ + + ALK+ M + +D ++ + + + EG +V
Sbjct: 54 SNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRAL 113
Query: 142 -----LGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQN 196
LG +LG ++ M+ G+++ A +F KM RD+ W+V++ GY +
Sbjct: 114 SSHPSLGVRLG--------NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKA 165
Query: 197 GLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ 256
G FDE L L+ M + V PD +L C +L+ G VH ++ LD +
Sbjct: 166 GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVV 225
Query: 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLI 316
+ LITMY CG V ARL+FD+M +D I
Sbjct: 226 NALITMYVKCG-------------------------------DVVSARLVFDRMPRRDCI 254
Query: 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376
W+AMISGY EN E L+LF M+ + PD +T+ SVISAC LG + +H Y+
Sbjct: 255 SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYV 314
Query: 377 DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436
K F D+ V N++I MY GS A +VF RM ++ +SWT+MI+ + +G AL
Sbjct: 315 VKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKAL 374
Query: 437 IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY----GC 492
+ M+ +++ P+ +T VL AC+ G +D G ++ +E Y
Sbjct: 375 ETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL-----HELAERKGLISYVVVANA 429
Query: 493 MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRV-HGEIELAEFAAKQLLQLDPD 551
+++++ + + +ALE+ +P +V+ W S++A R+ + E F + LL L P+
Sbjct: 430 LIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPN 488
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 8e-37
Identities = 108/427 (25%), Positives = 187/427 (43%), Gaps = 71/427 (16%)
Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
+G ++ L L E M+ V DE + C + G V + ++ +L L
Sbjct: 64 HGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRL 123
Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
+ +++M+ R G++ A +F +M E+DL
Sbjct: 124 GNAMLSMFV-------------------------------RFGELVHAWYVFGKMPERDL 152
Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
W+ ++ GYA+ + EAL L++ M G++PD T V+ C + L + + +H +
Sbjct: 153 FSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAH 212
Query: 376 IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNA 435
+ + F D+ V NA+I MY KCG + SAR VF+RM RR+ ISW +MI+ + +G+
Sbjct: 213 VVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEG 272
Query: 436 LIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI--------FASMTNEYN-IPPK 486
L F M++ S+DP+ +T V+ AC G GRE+ FA + N +
Sbjct: 273 LELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQM 332
Query: 487 YEHYGCMVD---LFGRA-----------------NLLRE-ALELVETMPF---APNVVIW 522
Y G + +F R N L + ALE M +P+ +
Sbjct: 333 YLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392
Query: 523 GSLMAACRVHGE----IELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKS 578
S+++AC G+ ++L E A ++ L AL+ +Y+K K E+ +
Sbjct: 393 ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI---EMYSKCKCIDKALEVFHN 449
Query: 579 MKERGIL 585
+ E+ ++
Sbjct: 450 IPEKDVI 456
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 7e-34
Identities = 85/334 (25%), Positives = 153/334 (45%), Gaps = 35/334 (10%)
Query: 98 PKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTG 157
P AL+ + M + ++ D + +L A A L G+++H L + G S V
Sbjct: 370 PDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANA 429
Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
L+ MY C I A +F + +D++ W+ +I G N E L F +M ++ ++P+
Sbjct: 430 LIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPN 488
Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
+ L LSAC+R G L G+ +H ++ + D L + L+ +Y CG M+ A F+
Sbjct: 489 SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN 548
Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
EKD++ W+ +++GY + A++L
Sbjct: 549 --------------------------------SHEKDVVSWNILLTGYVAHGKGSMAVEL 576
Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQA-QRIHLYIDKNAFGGDLRVNNAIIDMYA 396
FN M G+ PD+VT +S++ AC+ G++ Q + H +K + +L+ ++D+
Sbjct: 577 FNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG 636
Query: 397 KCGSLESAREVFERMR-RRNVISWTSMINAFAIH 429
+ G L A +M + W +++NA IH
Sbjct: 637 RAGKLTEAYNFINKMPITPDPAVWGALLNACRIH 670
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 97.6 bits (243), Expect = 5e-21
Identities = 72/307 (23%), Positives = 137/307 (44%), Gaps = 13/307 (4%)
Query: 70 ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
A +F +P + N + + + AL ++ +M + G++ID+F+F +++ +R
Sbjct: 278 ARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR 337
Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
L Q H + GF D T LV +Y G++ DAR +FD+M ++++ W+ +
Sbjct: 338 LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNAL 397
Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN- 248
I GY +G + + +FE M V P+ + +LSAC +G G + + + +N+
Sbjct: 398 IAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457
Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRA-GQVEDARLIF 307
+ A + +I + G +D A + + K V A + R +E RL
Sbjct: 458 IKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAA 517
Query: 308 DQ---MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
++ M + L + +++ Y + EA K+ ++ G LS+ AC +
Sbjct: 518 EKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG--------LSMHPACTWIE 569
Query: 365 VLDQAQR 371
V Q
Sbjct: 570 VKKQDHS 576
|
Length = 697 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 2e-19
Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 19/122 (15%)
Query: 598 EVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVI-----L 652
E + L+ D SH E+ +K G VP+ D++ EE R+ L
Sbjct: 7 EGKKTLSGDGSHP------TSKEELFQRIKVEGVVPETKEIGHDVDAEEFRDNGIKGKLL 60
Query: 653 W-HSEKLALCYGLISSKKDSCIRIVKNL-RVCEDCHNFIKLVSKVYAREIVIRDRTRFHH 710
H+EK AL YGL+++ RI+K L R+C DCH F + ++K REI++RD +RFHH
Sbjct: 61 ASHAEKQALAYGLLTT------RIIKVLKRMCGDCHEFFRYIAKYTGREIIVRDPSRFHH 114
Query: 711 YK 712
+K
Sbjct: 115 FK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 2e-15
Identities = 67/332 (20%), Positives = 151/332 (45%), Gaps = 18/332 (5%)
Query: 224 ILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK- 282
++S C+ + ++ V + + + D L +TLI+ A G +D +F +++
Sbjct: 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG 502
Query: 283 ---NLVVSTAMVSGYSRAGQVEDARLIFDQM----VEKDLICWSAMISGYAENNHPQEAL 335
N+ A++ G +RAGQV A + M V+ D + ++A+IS ++ A
Sbjct: 503 VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF 562
Query: 336 KLFNEM--QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIID 393
+ EM + + PD +T+ +++ ACA+ G +D+A+ ++ I + G V ++
Sbjct: 563 DVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622
Query: 394 MYAKCGSLESAREVFERMRRRNV----ISWTSMINAFAIHGDARNALIFFNKMKDESIDP 449
++ G + A +++ M+++ V + ++++++ GD A + + I
Sbjct: 623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682
Query: 450 NGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALEL 509
V++ ++ ACS+A + E++ + + P ++ N L +ALE+
Sbjct: 683 GTVSYSSLMGACSNAKNWKKALELYEDI-KSIKLRPTVSTMNALITALCEGNQLPKALEV 741
Query: 510 VETMPFA---PNVVIWGSLMAACRVHGEIELA 538
+ M PN + + L+ A + ++
Sbjct: 742 LSEMKRLGLCPNTITYSILLVASERKDDADVG 773
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 6e-13
Identities = 73/337 (21%), Positives = 145/337 (43%), Gaps = 31/337 (9%)
Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH 241
D ++ +I ++G D + +F EM + VE + ++ C+RAG ++ +
Sbjct: 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530
Query: 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD---------KVLLKNLVVSTAMVS 292
+ NV D + + LI+ G +D A FD + + + A++
Sbjct: 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRA---FDVLAEMKAETHPIDPDHITVGALMK 587
Query: 293 GYSRAGQVEDARLIFDQMVEKDLI-----CWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
+ AGQV+ A+ ++ QM+ + I ++ ++ ++ AL ++++M+ G+K
Sbjct: 588 ACANAGQVDRAKEVY-QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK 646
Query: 348 PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIID--MYAKC--GSLES 403
PD+V +++ H G LD+A I ++A +++ M A + +
Sbjct: 647 PDEVFFSALVDVAGHAGDLDKA----FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKK 702
Query: 404 AREVFERMRRRNVISWTSMINAFAI---HGDA-RNALIFFNKMKDESIDPNGVTFIGVLY 459
A E++E ++ + S +NA G+ AL ++MK + PN +T+ +L
Sbjct: 703 ALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762
Query: 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL 496
A D G ++ S E I P C+ L
Sbjct: 763 ASERKDDADVGLDLL-SQAKEDGIKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 2e-10
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
D++ ++ +I GY + +EALKLFNEM+ G+KP+ T +I
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 9e-09
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR 230
D+V ++ +IDGY + G +E L LF EMK ++P+ S ++ +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 2e-07
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 415 NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463
+V+++ ++I+ + G AL FN+MK I PN T+ ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 9e-07
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 389 NAIIDMYAKCGSLESAREVFERMRRR----NVISWTSMINAFA 427
N +ID Y K G +E A ++F M++R NV +++ +I+
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 3e-06
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD 349
+ ++ +I G + +EAL+LF EM+ G++PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 6e-06
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNV 214
V ++ +I GY + G +E L LF+EMK V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
++ +IDG + G +E L LF+EMK +EPD
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGM 346
+ ++++ISGY + +EAL+LF EM+ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 6e-05
Identities = 12/49 (24%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK----DLICWSAMISGYA 326
++V ++ GY + G+VE+A +F++M ++ ++ +S +I G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 389 NAIIDMYAKCGSLESAREVFERMRRRNV 416
N++I Y K G LE A E+F+ M+ + V
Sbjct: 4 NSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.001
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 389 NAIIDMYAKCGSLESAREVFERMRRRNV 416
NA++ AK G + A V E M+ +
Sbjct: 5 NALLLALAKAGDPDLALAVLEEMKASGL 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.001
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
D+V ++ +IDG + G DE + L +EM+
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 285 VVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
V +++SGY +AG++E+A +F +M EK +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDESI 447
+++ S+I+ + G AL F +MK++ +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.4 bits (83), Expect = 0.003
Identities = 8/34 (23%), Positives = 20/34 (58%)
Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
+ ++ D++ ++ +I G EA++L +EM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.004
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 389 NAIIDMYAKCGSLESAREVFERMRRRNV 416
N +ID K G +E A E+F+ M+ R +
Sbjct: 4 NTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.004
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 288 TAMVSGYSRAGQVEDARLIFDQMVEKDL 315
++ G +AG+VE+A +F +M E+ +
Sbjct: 4 NTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 722 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.83 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.82 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.82 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.82 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.81 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.79 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.78 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.77 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.77 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.72 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.72 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.7 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.65 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.63 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.58 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.58 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.57 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.55 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.55 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.54 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.54 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.52 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.51 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.49 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.48 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.46 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.46 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.44 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.44 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.43 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.43 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.42 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.4 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.37 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.35 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.3 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.3 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.28 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.27 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.26 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.26 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.23 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.21 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.2 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.2 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.19 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.19 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.18 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.17 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.14 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.11 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.1 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.1 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.07 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.06 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.05 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.05 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.04 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.02 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.02 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.01 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.98 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.97 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.97 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.96 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.95 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.92 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.89 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.88 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.86 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.86 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.85 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.84 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.82 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.82 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.77 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.76 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.76 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.74 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.71 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.7 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.67 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.66 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.62 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.62 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.62 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.59 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.58 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.57 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.57 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.57 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.57 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.53 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.52 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.48 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.46 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.43 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.41 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.38 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.37 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.37 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.37 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.35 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.34 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.34 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.34 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.31 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.29 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.25 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.24 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.23 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.22 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.21 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.2 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.15 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.13 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.1 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.06 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.06 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.04 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.02 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.98 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.98 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.98 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.94 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.92 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.91 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.88 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.77 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.75 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.72 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.72 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.71 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.7 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.7 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.7 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.7 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.67 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.65 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.59 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.57 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.57 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.53 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.53 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.51 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.51 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.5 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.48 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.47 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.43 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.4 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.39 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.37 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.36 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.34 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.34 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.33 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.3 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.26 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.23 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.2 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.16 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.11 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.09 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.09 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.07 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.06 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.04 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.04 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.0 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.98 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.98 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.97 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.96 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.93 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.91 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.91 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.86 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.85 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.85 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.84 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.77 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.75 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.74 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.74 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.73 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.73 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.69 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.59 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.54 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.48 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.48 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.46 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.43 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.4 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.37 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.35 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.32 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.29 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.28 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.24 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.16 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.15 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.14 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.05 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.93 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.91 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.86 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.8 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.77 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.5 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.45 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.45 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.37 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.37 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.23 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.23 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.17 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.17 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.12 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.1 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.03 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 94.97 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.91 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.81 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.75 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.69 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.48 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.36 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.36 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.33 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.32 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.3 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.3 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.26 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.25 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.23 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.18 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.13 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.09 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 93.97 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.97 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.84 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.62 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 93.6 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.5 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.34 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 93.2 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.2 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.94 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.94 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 92.75 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.5 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.35 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 91.92 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.75 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.67 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 91.56 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.3 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 91.22 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 90.74 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 90.62 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 90.58 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.57 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.17 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.05 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 89.92 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.87 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.55 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 89.4 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.37 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.99 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 88.9 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 88.39 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.21 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 88.14 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 87.81 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 86.74 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 86.72 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 86.72 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 86.63 | |
| PRK09687 | 280 | putative lyase; Provisional | 86.39 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 85.85 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 85.8 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 85.67 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 85.57 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 85.22 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 84.96 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 84.5 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 84.4 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 84.16 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 84.12 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 83.79 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 83.78 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 83.75 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 83.44 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.42 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 83.4 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 83.32 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 83.19 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 82.8 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 82.77 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 82.44 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 82.32 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 81.96 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 81.49 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 81.18 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 80.86 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 80.65 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 80.5 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-134 Score=1163.60 Aligned_cols=705 Identities=35% Similarity=0.642 Sum_probs=681.8
Q ss_pred CCCCCCCcchHHHHhhC---CChhHHHHHHHHHHHhcCCCCCCchhHHHHHHHhccCCCCCCCChHHHHHHhccCCCCCc
Q 004938 6 QPTKPLTLPTSTAISSC---SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPS 82 (722)
Q Consensus 6 ~~~~p~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~g~~~~A~~~f~~~~~~~~ 82 (722)
.+.+|+..++..++++| +.+..+.++|..+.+.+. .++..++|+|+++|++ + |+++.|+++|++|++||+
T Consensus 80 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~n~li~~~~~--~--g~~~~A~~~f~~m~~~d~ 152 (857)
T PLN03077 80 LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHP---SLGVRLGNAMLSMFVR--F--GELVHAWYVFGKMPERDL 152 (857)
T ss_pred cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCC---CCCchHHHHHHHHHHh--C--CChHHHHHHHhcCCCCCe
Confidence 35678889999999999 678899999999999998 7899999999999999 9 999999999999999999
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHH
Q 004938 83 RVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMY 162 (722)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 162 (722)
++||++|.+|++.|++++|+++|++|...|+.||.+||+.++++|++.+++..+.++|..+++.|+.||+.++|+||.+|
T Consensus 153 ~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y 232 (857)
T PLN03077 153 FSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMY 232 (857)
T ss_pred eEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHH
Q 004938 163 GACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242 (722)
Q Consensus 163 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 242 (722)
+++|++++|.++|++|+.+|+++||+||.+|++.|++++|+++|.+|.+.|+.||..||+.++.+|++.|+++.|.+++.
T Consensus 233 ~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~ 312 (857)
T PLN03077 233 VKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHG 312 (857)
T ss_pred hcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHH----------------------------
Q 004938 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGY---------------------------- 294 (722)
Q Consensus 243 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~---------------------------- 294 (722)
.+.+.|+.||..+||+|+++|+++|++++|.++|++|..+|.++||++|.+|
T Consensus 313 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~ 392 (857)
T PLN03077 313 YVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392 (857)
T ss_pred HHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeH
Confidence 9999999999999999999999999999999999999888888887777776
Q ss_pred ------------------------------------------HhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCch
Q 004938 295 ------------------------------------------SRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQ 332 (722)
Q Consensus 295 ------------------------------------------~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 332 (722)
+++|++++|.++|++|.++|+++||++|.+|+++|+.+
T Consensus 393 ~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~ 472 (857)
T PLN03077 393 ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCF 472 (857)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHH
Confidence 45566666777777777788899999999999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 004938 333 EALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR 412 (722)
Q Consensus 333 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 412 (722)
+|+.+|++|.. +++||..||+.++.+|++.|+++.+.++|..+.+.|+.++..++|+|+++|+++|++++|.++|+.+
T Consensus 473 eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~- 550 (857)
T PLN03077 473 EALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH- 550 (857)
T ss_pred HHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-
Confidence 99999999986 5899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHH
Q 004938 413 RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC 492 (722)
Q Consensus 413 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 492 (722)
.+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++
T Consensus 551 ~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~ 630 (857)
T PLN03077 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC 630 (857)
T ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999977899999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchH
Q 004938 493 MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDV 572 (722)
Q Consensus 493 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 572 (722)
|+++|++.|++++|.+++++|+++||..+|++|+.+|+.+|+.+.|+.+.+++++++|+++..|+.|+++|+..|+|++|
T Consensus 631 lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a 710 (857)
T PLN03077 631 VVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEV 710 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCccCCcccEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhCCcccCCcccccccchHHHhHhhh
Q 004938 573 GELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVIL 652 (722)
Q Consensus 573 ~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~pd~~~~~~~~~~~~~~~~~~ 652 (722)
.++++.|+++|++|+||+|||++++.+|.|.+||.+||+.++||+.|+++..+|++.||+||+..++ +.++++|+..++
T Consensus 711 ~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~ 789 (857)
T PLN03077 711 ARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFC 789 (857)
T ss_pred HHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999888 457789999999
Q ss_pred hchHHHHHHHHhhcCCCCCcEEEEcccccCcchhHHHHHHhhhcCceEEEecCCccccccCCccCCCC
Q 004938 653 WHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKD 720 (722)
Q Consensus 653 ~~~~~la~~~~~~~~~~~~~~~i~~nl~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~csc~~ 720 (722)
+||||||+|||||+||+|.||||+||||||+|||+++||||++++|+|||||.+|||||+||+|||+|
T Consensus 790 ~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 790 GHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred hccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-124 Score=1056.15 Aligned_cols=613 Identities=33% Similarity=0.639 Sum_probs=603.3
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCC-CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHH
Q 004938 79 APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEG-LTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTG 157 (722)
Q Consensus 79 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 157 (722)
.++..+|+++|.+|.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.+.++|..|.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4577899999999999999999999999999764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHH
Q 004938 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237 (722)
Q Consensus 158 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 237 (722)
|+.+|+++|++++|+++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcch
Q 004938 238 EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLIC 317 (722)
Q Consensus 238 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~ 317 (722)
.+++..+.+.|+.+|..++|+||++|+++|++++|.++ |++|.++|+++
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~v-------------------------------f~~m~~~~~vt 292 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCV-------------------------------FDGMPEKTTVA 292 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHH-------------------------------HHhCCCCChhH
Confidence 99999999999999999999999999999999999999 78888889999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 004938 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397 (722)
Q Consensus 318 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 397 (722)
||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|..+.+.|+.||..++++|+++|++
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k 372 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004938 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASM 477 (722)
Q Consensus 398 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 477 (722)
+|++++|.++|++|.++|+.+||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|
T Consensus 373 ~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m 452 (697)
T PLN03081 373 WGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452 (697)
T ss_pred CCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHH
Q 004938 478 TNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALV 557 (722)
Q Consensus 478 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 557 (722)
.+++|+.|+..+|++|+++|++.|++++|.+++++|++.|+..+|++|+.+|+.+|+++.|+.+++++++++|++...|.
T Consensus 453 ~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~ 532 (697)
T PLN03081 453 SENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYV 532 (697)
T ss_pred HHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchH
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCcchHHHHHHHHHhCCCccCCcccEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhCCcccCCcc
Q 004938 558 LLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHS 637 (722)
Q Consensus 558 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~pd~~~ 637 (722)
.|+++|++.|+|++|.++++.|+++|+++.||+|||++++.+|.|.+||..||+..+|++++.++..+|++.||+||+..
T Consensus 533 ~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~ 612 (697)
T PLN03081 533 VLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENE 612 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchHHHhHhhhhchHHHHHHHHhhcCCCCCcEEEEcccccCcchhHHHHHHhhhcCceEEEecCCccccccCCccC
Q 004938 638 ALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCS 717 (722)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~i~~nl~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~cs 717 (722)
++|++++++|+..+++||||||+|||||+||+|.||||+||||+|+|||+++||||++++|+|||||.+|||||+||+||
T Consensus 613 ~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~cs 692 (697)
T PLN03081 613 LLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCS 692 (697)
T ss_pred hhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 004938 718 CKDYW 722 (722)
Q Consensus 718 c~~~~ 722 (722)
|+|||
T Consensus 693 c~d~w 697 (697)
T PLN03081 693 CGDYW 697 (697)
T ss_pred ccccC
Confidence 99999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-72 Score=652.55 Aligned_cols=671 Identities=21% Similarity=0.270 Sum_probs=581.6
Q ss_pred CCcchHHHHhhC---CChhHHHHHHHHHHHhcCCCCCCchhHHHHHHHhccCCCCCCCChHHHHHHhcc----CCCCCcc
Q 004938 11 LTLPTSTAISSC---SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQ----IPAPPSR 83 (722)
Q Consensus 11 ~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~g~~~~A~~~f~~----~~~~~~~ 83 (722)
...++.++++++ +.+..+..++..+.+.|. .++..+++.++..+.+ . +.++.|.++++. .+.++..
T Consensus 50 ~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~---~~~~~~~~~ll~~~~~--~--~~~~~a~~~~~~~~~~~~~~~~~ 122 (857)
T PLN03077 50 STHDSNSQLRALCSHGQLEQALKLLESMQELRV---PVDEDAYVALFRLCEW--K--RAVEEGSRVCSRALSSHPSLGVR 122 (857)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---CCChhHHHHHHHHHhh--C--CCHHHHHHHHHHHHHcCCCCCch
Confidence 334445555555 678888889999988887 8899999999999988 7 889999998875 3557888
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHH
Q 004938 84 VSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYG 163 (722)
Q Consensus 84 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 163 (722)
.+|++|.+|++.|+++.|+++|++|. .||..+|+.++.+|++.|++++|.++|+.|.+.|+.||.++|+.++.+|+
T Consensus 123 ~~n~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~ 198 (857)
T PLN03077 123 LGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG 198 (857)
T ss_pred HHHHHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhC
Confidence 99999999999999999999999996 47999999999999999999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHHhcCC----CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHH
Q 004938 164 ACGKILDARLMFDKMS----YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239 (722)
Q Consensus 164 ~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 239 (722)
+.++++.+.+++..|. .+|+.+||+||.+|++.|++++|.++|++|. .||..||+++|.+|++.|++++|.+
T Consensus 199 ~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~ 274 (857)
T PLN03077 199 GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLE 274 (857)
T ss_pred CccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHH
Confidence 9999999999998886 4789999999999999999999999999996 4789999999999999999999999
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcc----cCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCc
Q 004938 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL----LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315 (722)
Q Consensus 240 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~ 315 (722)
+|.+|.+.|+.||..+|+.++.+|++.|+++.|.+++..|. .+|..+||++|.+|++.|++++|.++|++|..+|+
T Consensus 275 lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~ 354 (857)
T PLN03077 275 LFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDA 354 (857)
T ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCe
Confidence 99999999999999999999999999999999999999985 46899999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 004938 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395 (722)
Q Consensus 316 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 395 (722)
++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|..+.+.|+.++..++|+|+++|
T Consensus 355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y 434 (857)
T PLN03077 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434 (857)
T ss_pred eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004938 396 AKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475 (722)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 475 (722)
+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|.++.+.+++.
T Consensus 435 ~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~ 513 (857)
T PLN03077 435 SKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHA 513 (857)
T ss_pred HHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHH
Confidence 9999999999999999999999999999999999999999999999986 599999999999999999999999999999
Q ss_pred HhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--CCCCC
Q 004938 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL--DPDHD 553 (722)
Q Consensus 476 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~ 553 (722)
.+.+ .|+.++..++++|+++|+++|++++|.++|+++ .||..+|++++.+|.++|+.++|.++|++|.+. .|+ .
T Consensus 514 ~~~~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~ 589 (857)
T PLN03077 514 HVLR-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-E 589 (857)
T ss_pred HHHH-hCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-c
Confidence 9998 599999999999999999999999999999999 799999999999999999999999999999975 465 4
Q ss_pred chHHHHHHHhhhCCCcchHHHHHHHHH-hCCCccCCcccEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhCCcc
Q 004938 554 GALVLLSNIYAKDKRWQDVGELRKSMK-ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYV 632 (722)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~ 632 (722)
.+|..++.+|.+.|++++|.++|+.|+ +.|+.|+..... ..+..+. ..++. +++.++++ ++++.
T Consensus 590 ~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~----~lv~~l~----r~G~~----~eA~~~~~---~m~~~ 654 (857)
T PLN03077 590 VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA----CVVDLLG----RAGKL----TEAYNFIN---KMPIT 654 (857)
T ss_pred ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH----HHHHHHH----hCCCH----HHHHHHHH---HCCCC
Confidence 688999999999999999999999999 678876542100 0000000 01111 23334444 45789
Q ss_pred cCCcccccccchHHHhHhhhhchHHHH-HHHHhhcCCCCCcEEEEcccccCcchhHHHHHHhhhcCceEEE-------ec
Q 004938 633 PDIHSALVDLEDEEKREVILWHSEKLA-LCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVI-------RD 704 (722)
Q Consensus 633 pd~~~~~~~~~~~~~~~~~~~~~~~la-~~~~~~~~~~~~~~~i~~nl~~~~~~~~~~~~~s~~~~~~~~~-------~~ 704 (722)
||...|-.-+..+...+.+.- .|+.| ..+.+.|..++..+.+.+-....|+..++.+.-..|-.+.+-- --
T Consensus 655 pd~~~~~aLl~ac~~~~~~e~-~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~ 733 (857)
T PLN03077 655 PDPAVWGALLNACRIHRHVEL-GELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEV 733 (857)
T ss_pred CCHHHHHHHHHHHHHcCChHH-HHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEE
Confidence 998776544444322111110 12222 3455666666655545555677899999999998887763221 11
Q ss_pred CCccccccCCccC
Q 004938 705 RTRFHHYKDGVCS 717 (722)
Q Consensus 705 ~~~~h~~~~g~cs 717 (722)
.+..|-|..|--|
T Consensus 734 ~~~~~~f~~~d~~ 746 (857)
T PLN03077 734 KGKVHAFLTDDES 746 (857)
T ss_pred CCEEEEEecCCCC
Confidence 3567888666443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-66 Score=585.03 Aligned_cols=507 Identities=18% Similarity=0.248 Sum_probs=368.1
Q ss_pred CchhHHHHHHHhccCCCCCCCChHHHHHHhccCCCCCcch-----HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCccc
Q 004938 45 QNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRV-----SNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFS 119 (722)
Q Consensus 45 ~~~~~~~~li~~~~~~~~~~g~~~~A~~~f~~~~~~~~~~-----~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 119 (722)
++...+..+++.+.+ + |++++|+++|++|+.++... ++.++.+|.+.|..++|+.+|+.|.. ||..+
T Consensus 368 ~~~~~~~~~y~~l~r--~--G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~T 439 (1060)
T PLN03218 368 RKSPEYIDAYNRLLR--D--GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLST 439 (1060)
T ss_pred CCchHHHHHHHHHHH--C--cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHH
Confidence 344455555555555 5 66666666666665544433 33445556666666666666666653 66666
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCC----CCCcccHHHHHHHHHh
Q 004938 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS----YRDIVPWSVMIDGYFQ 195 (722)
Q Consensus 120 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~ 195 (722)
|+.++++|++.|+++.|.++|+.|.+.|+.||..+||.||.+|+++|++++|.++|++|. .||.++||+||.+|++
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666666666666666665 3566666666666666
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHH--cCCCCCHhHHHHHHHHHHhcCChHHHH
Q 004938 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID--NNVALDAHLQSTLITMYANCGCMDMAK 273 (722)
Q Consensus 196 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~ 273 (722)
.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++|++|.+ .|+.||..+|++||.+|+++|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 666666666666666666666666666666666666666666666666654 455666666666666666666666666
Q ss_pred HHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhH
Q 004938 274 GLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353 (722)
Q Consensus 274 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 353 (722)
++|++|.+.+ ..++..+||.+|.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 600 elf~~M~e~g---------------------------i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Ty 652 (1060)
T PLN03218 600 EVYQMIHEYN---------------------------IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF 652 (1060)
T ss_pred HHHHHHHHcC---------------------------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 6644442221 2345678888888888888888888888888888888888888
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChHHHHHHHHHHHHc
Q 004938 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR----RRNVISWTSMINAFAIH 429 (722)
Q Consensus 354 ~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~ 429 (722)
+.++.+|++.|++++|.++++.|.+.|+.|+..+|++||.+|+++|++++|.++|++|. .||..+||+||.+|++.
T Consensus 653 nsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~ 732 (1060)
T PLN03218 653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG 732 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 88888888888888888888888888888888888888888888888888888888884 47888888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHH----hc-----
Q 004938 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFG----RA----- 500 (722)
Q Consensus 430 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~----~~----- 500 (722)
|+.++|+++|++|...|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.||..+|++|++++. ++
T Consensus 733 G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~ 811 (1060)
T PLN03218 733 NQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGE 811 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 88888888888888888888888888888888888888888888888877 488888888888876633 22
Q ss_pred --------------CCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-cCCCCCchHHHHHHH
Q 004938 501 --------------NLLREALELVETM---PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ-LDPDHDGALVLLSNI 562 (722)
Q Consensus 501 --------------g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~ 562 (722)
+..++|..+|++| ++.||..+|+.++..+...+..+.+..+++.+.. -.+.+..+|..|++.
T Consensus 812 ~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g 891 (1060)
T PLN03218 812 PVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDG 891 (1060)
T ss_pred hhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHh
Confidence 2346799999999 8999999999999777788888888888877643 234556788889887
Q ss_pred hhhCCCcchHHHHHHHHHhCCCccCCc
Q 004938 563 YAKDKRWQDVGELRKSMKERGILKERA 589 (722)
Q Consensus 563 ~~~~g~~~~a~~~~~~m~~~g~~~~~~ 589 (722)
+.+. .++|..++++|.+.|+.|+..
T Consensus 892 ~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 892 FGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 7332 358999999999999997754
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-64 Score=569.36 Aligned_cols=438 Identities=24% Similarity=0.412 Sum_probs=415.2
Q ss_pred CCCCCCcchHHHHhhC---CChhHHHHHHHHHHHhcCCCCCCchhHHHHHHHhccCCCCCCCChHHHHHHhccCCCCCcc
Q 004938 7 PTKPLTLPTSTAISSC---SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSR 83 (722)
Q Consensus 7 ~~~p~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~g~~~~A~~~f~~~~~~~~~ 83 (722)
+..|+..+|.+++++| ++...+.++|..+.+.|. .+++.++|.|+++|++ + |.++.|+++|++|+.||.+
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~---~~~~~~~n~Li~~y~k--~--g~~~~A~~lf~~m~~~~~~ 190 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGF---EPDQYMMNRVLLMHVK--C--GMLIDARRLFDEMPERNLA 190 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC---CcchHHHHHHHHHHhc--C--CCHHHHHHHHhcCCCCCee
Confidence 4678999999999999 678889999999999998 8999999999999999 9 9999999999999999999
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHH
Q 004938 84 VSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYG 163 (722)
Q Consensus 84 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 163 (722)
+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++++|++.+.++.+.++|..+.+.|+.+|..++|+|+++|+
T Consensus 191 t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~ 270 (697)
T PLN03081 191 SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYS 270 (697)
T ss_pred eHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHH
Q 004938 164 ACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEF 243 (722)
Q Consensus 164 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 243 (722)
++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|+++|+.
T Consensus 271 k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~ 350 (697)
T PLN03081 271 KCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAG 350 (697)
T ss_pred HCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHH
Q 004938 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323 (722)
Q Consensus 244 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~ 323 (722)
|.+.|+.||..++++|+++|+++|++++|.++ |++|.++|+++||+||.
T Consensus 351 m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~v-------------------------------f~~m~~~d~~t~n~lI~ 399 (697)
T PLN03081 351 LIRTGFPLDIVANTALVDLYSKWGRMEDARNV-------------------------------FDRMPRKNLISWNALIA 399 (697)
T ss_pred HHHhCCCCCeeehHHHHHHHHHCCCHHHHHHH-------------------------------HHhCCCCCeeeHHHHHH
Confidence 99999999999999999999999999999999 78888889999999999
Q ss_pred HHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHH-cCCCCChhHHHHHHHHHHhcCCHH
Q 004938 324 GYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK-NAFGGDLRVNNAIIDMYAKCGSLE 402 (722)
Q Consensus 324 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~ 402 (722)
+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|+++
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 9999999999999999999999999999999999999999999999999999986 699999999999999999999999
Q ss_pred HHHHHHHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhh
Q 004938 403 SAREVFERMR-RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNE 480 (722)
Q Consensus 403 ~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 480 (722)
+|.++|++|. .|+..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|..+++.|++.|++++|.++++.|.++
T Consensus 480 eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 480 EAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9999999987 58888999999999999999999999888865 5665 457888888888888888888888888874
Q ss_pred cCCCC
Q 004938 481 YNIPP 485 (722)
Q Consensus 481 ~~~~~ 485 (722)
|+..
T Consensus 558 -g~~k 561 (697)
T PLN03081 558 -GLSM 561 (697)
T ss_pred -CCcc
Confidence 6543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-63 Score=561.69 Aligned_cols=502 Identities=17% Similarity=0.209 Sum_probs=399.2
Q ss_pred CcchHHHHhhC---CChhHHHHHHHHHHHhcCCCCCCchhHHHHHHHhccCCCCCCCChHHHHHHhccCCCCCcchHHHH
Q 004938 12 TLPTSTAISSC---SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKF 88 (722)
Q Consensus 12 ~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l 88 (722)
...+..++..| +++..+.+++..+.+.+. .+++..+++.++..|.+ . |.+++|..+|+.|+.||..+||.+
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gv--v~~~~v~~~~li~~~~~--~--g~~~eAl~lf~~M~~pd~~Tyn~L 443 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGL--LDMDKIYHAKFFKACKK--Q--RAVKEAFRFAKLIRNPTLSTFNML 443 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCC--CCchHHHHHHHHHHHHH--C--CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 33444444444 788999999999998885 25678888999999998 7 999999999999999999999999
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCH
Q 004938 89 IRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKI 168 (722)
Q Consensus 89 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 168 (722)
|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.||.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC----CCCcccHHHHHHHHHhCCChhHHHHHHHHHHH--CCCCCCHhHHHHHHHHHHccCChHHHHHHHH
Q 004938 169 LDARLMFDKMS----YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKM--SNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242 (722)
Q Consensus 169 ~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 242 (722)
++|.++|++|. .||.++||.||.+|++.|++++|.++|++|.. .|+.||..||+++|.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999996 47999999999999999999999999999976 6899999999999999999999999999999
Q ss_pred HHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHH
Q 004938 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMI 322 (722)
Q Consensus 243 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li 322 (722)
.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|...+ ..+|..+|+.+|
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G---------------------------v~PD~~TynsLI 656 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG---------------------------VKPDEVFFSALV 656 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------------------------CCCCHHHHHHHH
Confidence 99999999999999999999999999999999987774321 234555555555
Q ss_pred HHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 004938 323 SGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLE 402 (722)
Q Consensus 323 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 402 (722)
.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.||..+||+||.+|++.|+++
T Consensus 657 ~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~e 736 (1060)
T PLN03218 657 DVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLP 736 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhcCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---------------
Q 004938 403 SAREVFERMRR----RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH--------------- 463 (722)
Q Consensus 403 ~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--------------- 463 (722)
+|.++|++|.+ ||..+|++++.+|++.|+.++|.++|++|.+.|+.||..+|+.++..|.+
T Consensus 737 eAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f 816 (1060)
T PLN03218 737 KALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSF 816 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 55555555542 55555555555555555555555555555555555555555555543321
Q ss_pred --------cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHc
Q 004938 464 --------AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM---PFAPNVVIWGSLMAACRVH 532 (722)
Q Consensus 464 --------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~ 532 (722)
.+..++|..+|++|.+ .|+.||..+|+.++..+.+.+..+.+..+++.| +..|+..+|++|+.++.+.
T Consensus 817 ~~g~~~~~n~w~~~Al~lf~eM~~-~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~ 895 (1060)
T PLN03218 817 DSGRPQIENKWTSWALMVYRETIS-AGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY 895 (1060)
T ss_pred hccccccccchHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC
Confidence 1234678889999987 489999999999998888888888898888888 4556788999999988433
Q ss_pred CCHHHHHHHHHHHHccC
Q 004938 533 GEIELAEFAAKQLLQLD 549 (722)
Q Consensus 533 g~~~~a~~~~~~~~~~~ 549 (722)
.++|..++++|.+.+
T Consensus 896 --~~~A~~l~~em~~~G 910 (1060)
T PLN03218 896 --DPRAFSLLEEAASLG 910 (1060)
T ss_pred --hHHHHHHHHHHHHcC
Confidence 468999999988754
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=316.03 Aligned_cols=543 Identities=13% Similarity=0.067 Sum_probs=403.2
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCchhHHHHHHHhccCCCCCCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCCch
Q 004938 23 SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP---APPSRVSNKFIRAISWSHRPK 99 (722)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~ 99 (722)
++...+...+..+++..+ .++..+..+...+.. . |+++.|...+..+. +.+...|+.+...+.+.|+++
T Consensus 309 g~~~~A~~~~~~~~~~~p----~~~~~~~~la~~~~~--~--g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 380 (899)
T TIGR02917 309 GNLEQAYQYLNQILKYAP----NSHQARRLLASIQLR--L--GRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFE 380 (899)
T ss_pred CCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHH--C--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHH
Confidence 677778888877776653 456667777777777 6 88888888887653 335567888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCC
Q 004938 100 HALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179 (722)
Q Consensus 100 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 179 (722)
+|.++|+++.+..+. +...+..+...+...|+.++|...+..+.+... ........++..|.+.|++++|.++++.+.
T Consensus 381 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 458 (899)
T TIGR02917 381 KAAEYLAKATELDPE-NAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLE 458 (899)
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 888888888775322 445566667777788888888888888877652 234455667778888888888888888775
Q ss_pred C---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHH
Q 004938 180 Y---RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ 256 (722)
Q Consensus 180 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 256 (722)
. .+...|+.+...|...|++++|.+.|+++.+.. +.+...+..+...+...|+++.|.+.++.+++.+ +.+..++
T Consensus 459 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 536 (899)
T TIGR02917 459 KKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAI 536 (899)
T ss_pred HhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHH
Confidence 3 355568888888888888888888888887642 3345566677777788888888888888887764 3467777
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcccC---CchHHHHHHHHHHhcCCHHHHHHHHhccCCC---CcchHHHHHHHHHhcCC
Q 004938 257 STLITMYANCGCMDMAKGLFDKVLLK---NLVVSTAMVSGYSRAGQVEDARLIFDQMVEK---DLICWSAMISGYAENNH 330 (722)
Q Consensus 257 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~ 330 (722)
..+...|.+.|+.++|...|+++... +...+..++..|.+.|++++|...++.+... +...|..+...|...|+
T Consensus 537 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 88888888888888888888877433 4456677788888888888888888877432 45678888888888888
Q ss_pred chHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004938 331 PQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410 (722)
Q Consensus 331 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 410 (722)
+++|+..|+++.+.. +.+...+..+..++...|++++|..++..+.+.. +.+...+..++..+.+.|++++|.++++.
T Consensus 617 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 694 (899)
T TIGR02917 617 LNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKS 694 (899)
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888887653 3345567777777788888888888888877653 44567777788888888888888888887
Q ss_pred cCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCc
Q 004938 411 MRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487 (722)
Q Consensus 411 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 487 (722)
+.+ .+...|..+...+...|++++|++.|+++... .|+..++..+..++.+.|++++|.+.++.+.+ ..+.+.
T Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~ 770 (899)
T TIGR02917 695 LQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDA 770 (899)
T ss_pred HHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCH
Confidence 764 35566777777788888888888888887774 45556677777778888888888888887776 345566
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhh
Q 004938 488 EHYGCMVDLFGRANLLREALELVETM-PF-APNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAK 565 (722)
Q Consensus 488 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 565 (722)
..+..+...|.+.|++++|.+.|+++ .. +++..+++.+...+...|+ ++|+..+++++++.|+++..+..++.+|..
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE 849 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 77777788888888888888888776 22 3356677777777777777 668888888887777777777777777777
Q ss_pred CCCcchHHHHHHHHHhCCC
Q 004938 566 DKRWQDVGELRKSMKERGI 584 (722)
Q Consensus 566 ~g~~~~a~~~~~~m~~~g~ 584 (722)
.|++++|.++++++.+.+.
T Consensus 850 ~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 850 KGEADRALPLLRKAVNIAP 868 (899)
T ss_pred cCCHHHHHHHHHHHHhhCC
Confidence 8888888888877777654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-31 Score=314.82 Aligned_cols=541 Identities=15% Similarity=0.062 Sum_probs=379.5
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCchhHHHHHHHhccCCCCCCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCCch
Q 004938 23 SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP---APPSRVSNKFIRAISWSHRPK 99 (722)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~ 99 (722)
++...+...+..+++... . ....+..+...+.. . |+++.|...|+... +.+...+..+...+.+.|+++
T Consensus 275 ~~~~~A~~~~~~~l~~~~---~-~~~~~~~~~~~~~~--~--g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 346 (899)
T TIGR02917 275 KNYEDARETLQDALKSAP---E-YLPALLLAGASEYQ--L--GNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVD 346 (899)
T ss_pred cCHHHHHHHHHHHHHhCC---C-chhHHHHHHHHHHH--c--CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHH
Confidence 566666666666665543 1 12222222333334 4 77888877776542 234455667777777888888
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCC
Q 004938 100 HALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179 (722)
Q Consensus 100 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 179 (722)
+|+..+..+..... .+...+..+...+.+.|+.++|.++++.+.+.. +.+...+..+...+...|++++|.+.|+.+.
T Consensus 347 ~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 424 (899)
T TIGR02917 347 EAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAA 424 (899)
T ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 88888877776532 245566677777777788888888887777654 3355666777777777888888888777665
Q ss_pred CC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHH
Q 004938 180 YR---DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ 256 (722)
Q Consensus 180 ~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 256 (722)
.. +...+..++..+.+.|++++|+++++.+... .+++..++..+...+...|+++.|.+.+..+++.. +.+...+
T Consensus 425 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 502 (899)
T TIGR02917 425 QLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAA 502 (899)
T ss_pred hhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHH
Confidence 32 2334566777777888888888888777654 34456677777777777888888888888777654 3355667
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcccC---CchHHHHHHHHHHhcCCHHHHHHHHhccCCC---CcchHHHHHHHHHhcCC
Q 004938 257 STLITMYANCGCMDMAKGLFDKVLLK---NLVVSTAMVSGYSRAGQVEDARLIFDQMVEK---DLICWSAMISGYAENNH 330 (722)
Q Consensus 257 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~ 330 (722)
..+...+.+.|++++|.+.|+++... +..++..+...+.+.|+.++|...|+++... +...+..++..|...|+
T Consensus 503 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 582 (899)
T TIGR02917 503 ANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQ 582 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCC
Confidence 77777788888888888888777532 4566777777777888888888887776333 44566677777888888
Q ss_pred chHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004938 331 PQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410 (722)
Q Consensus 331 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 410 (722)
+++|+.+++++.... +.+..++..+..++...|++++|...+..+.+.. +.+...+..+...|.+.|++++|...|++
T Consensus 583 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 660 (899)
T TIGR02917 583 LKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKR 660 (899)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888777643 4456677777777778888888888887777653 34556677777778888888888888877
Q ss_pred cCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCc
Q 004938 411 MRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487 (722)
Q Consensus 411 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 487 (722)
+.+ .+..+|..++..+...|++++|..+++.+...+ +++...+..+...+...|++++|.+.|+.+... .|+.
T Consensus 661 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~ 736 (899)
T TIGR02917 661 ALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSS 736 (899)
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCc
Confidence 653 346677777778888888888888888777753 344556666777777788888888888777652 3444
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhh
Q 004938 488 EHYGCMVDLFGRANLLREALELVETM-P-FAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAK 565 (722)
Q Consensus 488 ~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 565 (722)
..+..++.++.+.|++++|.+.++++ . .+.+..++..+...|...|+.++|...|+++++..|+++..+..++.+|..
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 816 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE 816 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 66777777788888888888777776 2 233566777777777778888888888888888888777777788888888
Q ss_pred CCCcchHHHHHHHHHhC
Q 004938 566 DKRWQDVGELRKSMKER 582 (722)
Q Consensus 566 ~g~~~~a~~~~~~m~~~ 582 (722)
.|+ ++|..+++++.+.
T Consensus 817 ~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 817 LKD-PRALEYAEKALKL 832 (899)
T ss_pred cCc-HHHHHHHHHHHhh
Confidence 887 7777777777654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=234.08 Aligned_cols=106 Identities=55% Similarity=1.009 Sum_probs=97.9
Q ss_pred cccEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhCCcccCCcccccccchHHH--------hHhhhhchHHHHH
Q 004938 589 ACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEK--------REVILWHSEKLAL 660 (722)
Q Consensus 589 ~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~pd~~~~~~~~~~~~~--------~~~~~~~~~~la~ 660 (722)
||||+++ |.|.+||.+||+. ++..++...||.|++..++|+++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7899876 9999999999987 566777889999999999998888766 5688999999999
Q ss_pred HHHhhcCCCCCcEEEEccc-ccCcchhHHHHHHhhhcCceEEEecCCcccccc
Q 004938 661 CYGLISSKKDSCIRIVKNL-RVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYK 712 (722)
Q Consensus 661 ~~~~~~~~~~~~~~i~~nl-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~ 712 (722)
||||+++ +|+||+ |||+|||+++|+||+++||+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 899999 999999999999999999999999999999997
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-23 Score=247.56 Aligned_cols=540 Identities=11% Similarity=0.049 Sum_probs=318.3
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCchhHHHHHHHhccCCCCCCCChHHHHHHhccCCC--CCcc-hH--------------
Q 004938 23 SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPA--PPSR-VS-------------- 85 (722)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~g~~~~A~~~f~~~~~--~~~~-~~-------------- 85 (722)
++.+.+.+....++... +.++.++..+...+.. . |+.+.|.+.+++..+ |+.. .+
T Consensus 42 ~~~d~a~~~l~kl~~~~----p~~p~~~~~~~~~~l~--~--g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~ 113 (1157)
T PRK11447 42 HREDLVRQSLYRLELID----PNNPDVIAARFRLLLR--Q--GDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGR 113 (1157)
T ss_pred CChHHHHHHHHHHHccC----CCCHHHHHHHHHHHHh--C--CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchh
Confidence 56667777777666554 4577888888888877 7 999999999987633 3322 22
Q ss_pred --HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHH
Q 004938 86 --NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRF-SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMY 162 (722)
Q Consensus 86 --~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 162 (722)
-.+...+.+.|++++|++.|+.+.+... |+.. ............++.++|...++.+++.. +.+...+..+...+
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll 191 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLL 191 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 2334468889999999999999987532 2321 11111122234589999999999999875 55677888999999
Q ss_pred HhCCCHHHHHHHHhcCCCCCcc------cH-----------------HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh
Q 004938 163 GACGKILDARLMFDKMSYRDIV------PW-----------------SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEM 219 (722)
Q Consensus 163 ~~~g~~~~A~~~f~~m~~~~~~------~~-----------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 219 (722)
...|+.++|+..|+++...... .| ...+..+-.....+.|...+..+......|+..
T Consensus 192 ~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~ 271 (1157)
T PRK11447 192 FSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR 271 (1157)
T ss_pred HccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH
Confidence 9999999999999987432110 01 111111111111223333333332221112211
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCc-----hHHHH-----
Q 004938 220 VLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL-----VVSTA----- 289 (722)
Q Consensus 220 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~----- 289 (722)
. ...-..+...|++++|...++.+++.. +.+..++..|...|.+.|++++|...|++..+.+. ..|..
T Consensus 272 ~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 272 A-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred H-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 1 111223344555555555555555542 22445555555555555555555555555532211 11111
Q ss_pred -------HHHHHHhcCCHHHHHHHHhccCCC---CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCC-hhhHH----
Q 004938 290 -------MVSGYSRAGQVEDARLIFDQMVEK---DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD-KVTML---- 354 (722)
Q Consensus 290 -------li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~---- 354 (722)
....+.+.|++++|+..|++.... +...+..+...+...|++++|++.|++..+. .|+ ...+.
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~ 427 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLAN 427 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 122344555555555555554322 2334444555555555555555555555543 222 22222
Q ss_pred --------------------------------------HHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 004938 355 --------------------------------------SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA 396 (722)
Q Consensus 355 --------------------------------------~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~ 396 (722)
.....+...|++++|.+.++.+++.. +.+..++..+...|.
T Consensus 428 l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 428 LYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLR 506 (1157)
T ss_pred HHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 22333445566666666666666543 234455556666666
Q ss_pred hcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHHHhc
Q 004938 397 KCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV---------TFIGVLYACSHA 464 (722)
Q Consensus 397 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~a~~~~ 464 (722)
+.|++++|...|+++.+ .+...+..+...+...|+.++|+..++++......++.. .+..+...+...
T Consensus 507 ~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 66666666666665532 233344444444455666666666665543321111111 122334556667
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 004938 465 GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAA 542 (722)
Q Consensus 465 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 542 (722)
|+.++|.++++ ..+++...+..+.+.|.+.|++++|++.+++. ...| +...+..+...+...|++++|+..+
T Consensus 587 G~~~eA~~~l~------~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 587 GKEAEAEALLR------QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred CCHHHHHHHHH------hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 77777777665 12455566777888888888888888888887 4455 4677888888888888888888888
Q ss_pred HHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 543 KQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 543 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
+++++..|+++..+..++.++...|++++|.++++.+.+..
T Consensus 661 ~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 661 AKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 88888888888888888888888888888888888887653
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-21 Score=232.29 Aligned_cols=539 Identities=12% Similarity=0.017 Sum_probs=393.7
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCchhHHHHHHHhccCCCCCCCChHHHHHHhccCCC--C-CcchHHHHHHHHHhCCCch
Q 004938 23 SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPA--P-PSRVSNKFIRAISWSHRPK 99 (722)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~ 99 (722)
+....+.+.+..++.... ++..+...+....... . |+.++|...|+++.. | +...+..+...+...|+.+
T Consensus 126 g~~~eA~~~~~~~l~~~p----~~~~la~~y~~~~~~~-~--g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 126 GRTEEALASYDKLFNGAP----PELDLAVEYWRLVAKL-P--AQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred CCHHHHHHHHHHHccCCC----CChHHHHHHHHHHhhC-C--ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHH
Confidence 667777777777765443 3332211122222221 3 889999999987643 3 4556788888899999999
Q ss_pred HHHHHHHHHHHCCCCC----------------Cccc---HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHH
Q 004938 100 HALKVFLKMLNEGLTI----------------DRFS---FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160 (722)
Q Consensus 100 ~a~~~~~~m~~~g~~p----------------~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 160 (722)
+|++.|+++....... +... +...+..+-....+..+...+....+....|+.. ...+..
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~ 277 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGL 277 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHH
Confidence 9999999986542110 0000 1111111111122334444554443332233222 223456
Q ss_pred HHHhCCCHHHHHHHHhcCCC--C-CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHhHH------------HHH
Q 004938 161 MYGACGKILDARLMFDKMSY--R-DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP-DEMVL------------SKI 224 (722)
Q Consensus 161 ~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~------------~~l 224 (722)
.+...|++++|+..|++... | +...+..+...|.+.|++++|+..|++..+..... +...+ ...
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 67789999999999998754 3 55678999999999999999999999988753221 11111 122
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccC---CchHHHHHHHHHHhcCCHH
Q 004938 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK---NLVVSTAMVSGYSRAGQVE 301 (722)
Q Consensus 225 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~ 301 (722)
...+.+.|++++|...++.+++.. +.+...+..+...|.+.|++++|.+.|++..+. +...+..+...|. .++.+
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~ 435 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPE 435 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHH
Confidence 345678899999999999999975 346778888999999999999999999999653 4456667777774 56789
Q ss_pred HHHHHHhccCCCC------------cchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCCchH
Q 004938 302 DARLIFDQMVEKD------------LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD-KVTMLSVISACAHLGVLDQ 368 (722)
Q Consensus 302 ~A~~~f~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~ 368 (722)
+|...++.+.... ...+..+...+...|++++|++.|++.++. .|+ ...+..+...+.+.|++++
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 9999998775431 224556777888999999999999999885 454 4566778888999999999
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----Ch---------HHHHHHHHHHHHcCCHHHH
Q 004938 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR----NV---------ISWTSMINAFAIHGDARNA 435 (722)
Q Consensus 369 a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~g~~~~A 435 (722)
|...++.+++.. +.+...+..+...+.+.|+.++|...++.+... +. ..+..+...+...|+.++|
T Consensus 514 A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 514 ADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 999999998753 345555556666778899999999999988642 11 1123456678899999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 004938 436 LIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-P 514 (722)
Q Consensus 436 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 514 (722)
+.+++. .+++...+..+...+.+.|++++|+..|+.+.+ ..|.+...+..++.+|...|++++|++.++.. .
T Consensus 593 ~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 593 EALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 999872 244555677888899999999999999999997 34556788999999999999999999999987 4
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCc------hHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 515 FAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG------ALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 515 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
..|+ ...+..+..++...|++++|...++++++..|+++. .+..++.++...|++++|...++....
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4554 567777888899999999999999999998776543 555679999999999999999998864
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.6e-20 Score=207.49 Aligned_cols=497 Identities=11% Similarity=-0.002 Sum_probs=360.6
Q ss_pred CChHHHHHHhccC---CCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHH
Q 004938 65 SSLYYALSIFSQI---PAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHG 141 (722)
Q Consensus 65 g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 141 (722)
|+++.|...|+.. .+.+..++..|...|.+.|+.++|+..+++..+. .|+...|..++..+ ++.++|..+++
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ye 132 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTTVE 132 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHHHH
Confidence 9999999999864 3335667889999999999999999999999886 35555555544333 88889999999
Q ss_pred HHHHhCCCCchhhHHHHHHH--------HHhCCCHHHHHHHHhcCCCCC--ccc-HHHHHHHHHhCCChhHHHHHHHHHH
Q 004938 142 LGTKLGFGSDPFVQTGLVGM--------YGACGKILDARLMFDKMSYRD--IVP-WSVMIDGYFQNGLFDEVLNLFEEMK 210 (722)
Q Consensus 142 ~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~f~~m~~~~--~~~-~~~li~~~~~~g~~~~A~~~~~~m~ 210 (722)
++.+.. +.+..++..+... |.+.+...+|++ .+...++ ... .-.+...|.+.|++++|++++.++.
T Consensus 133 ~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 133 ELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 999875 4455666666665 887777777776 3333444 333 3344889999999999999999999
Q ss_pred HCCCCCCHhHHHHHHHHHHc-cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhccc-----CCc
Q 004938 211 MSNVEPDEMVLSKILSACSR-AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL-----KNL 284 (722)
Q Consensus 211 ~~g~~p~~~t~~~ll~~~~~-~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~ 284 (722)
+.+.. +..-...+-.+|.. .++ +.+..++.. .+..++.++..+++.|.+.|+.++|.++++++.. ++.
T Consensus 210 k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~ 283 (987)
T PRK09782 210 QQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE 283 (987)
T ss_pred hcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence 88533 34445566667776 366 777777442 3446889999999999999999999999988832 111
Q ss_pred hHHHHH------------------------------HHHH----------------------------------------
Q 004938 285 VVSTAM------------------------------VSGY---------------------------------------- 294 (722)
Q Consensus 285 ~~~~~l------------------------------i~~~---------------------------------------- 294 (722)
.+|--+ +.-+
T Consensus 284 ~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 363 (987)
T PRK09782 284 KSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALR 363 (987)
T ss_pred HHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHH
Confidence 222111 1111
Q ss_pred -----------------------HhcCCHHHHHHHHhccCCC--C----cchHHHHHHHHHhcCC---chHHHHH-----
Q 004938 295 -----------------------SRAGQVEDARLIFDQMVEK--D----LICWSAMISGYAENNH---PQEALKL----- 337 (722)
Q Consensus 295 -----------------------~~~g~~~~A~~~f~~~~~~--~----~~~~~~li~~~~~~g~---~~~A~~~----- 337 (722)
.+.|+.++|.++|+..... + ...-+-++..|...+. ..+++.+
T Consensus 364 ~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 443 (987)
T PRK09782 364 LARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLP 443 (987)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccc
Confidence 5667777788877776441 1 1233356666666655 2333332
Q ss_pred -----------------HHHHHh-CCCCC---ChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 004938 338 -----------------FNEMQV-CGMKP---DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA 396 (722)
Q Consensus 338 -----------------~~~m~~-~g~~p---~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~ 396 (722)
+..... .+..| +...+..+..++.. ++.++|...+....... |+......+...+.
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~ 520 (987)
T PRK09782 444 LAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAY 520 (987)
T ss_pred cchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHH
Confidence 111111 11123 44555666655555 88888999777777653 55444444555557
Q ss_pred hcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHH
Q 004938 397 KCGSLESAREVFERMRR--RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV-TFIGVLYACSHAGLVDEGREI 473 (722)
Q Consensus 397 ~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~ 473 (722)
..|++++|...|+++.. ++...+..+...+.+.|+.++|...|++..+. .|+.. .+..+.......|++++|...
T Consensus 521 ~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl~~ 598 (987)
T PRK09782 521 QVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELALND 598 (987)
T ss_pred HCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHHHH
Confidence 89999999999998764 44556777788889999999999999999885 35543 333444455667999999999
Q ss_pred HHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004938 474 FASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551 (722)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 551 (722)
++...+ ..|+...|..+..++.+.|++++|+..+++. ...|+ ...+..+..++...|+.++|+..++++++++|+
T Consensus 599 ~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~ 675 (987)
T PRK09782 599 LTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD 675 (987)
T ss_pred HHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 999886 3467888999999999999999999999988 56665 567788888899999999999999999999999
Q ss_pred CCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 552 HDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 552 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
++..+..++.+|...|++++|...+++..+..
T Consensus 676 ~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 676 DPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999987643
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-21 Score=195.93 Aligned_cols=384 Identities=15% Similarity=0.156 Sum_probs=302.3
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH-hHHHHHHH
Q 004938 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP-DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDA-HLQSTLIT 261 (722)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~-~~~~~li~ 261 (722)
.+|..+...+-..|++++|+.+++.|.+. +| ....|..+..++...|+.+.|.+.+...++. .|+. ...+-+..
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhH
Confidence 34555666666666666666666666553 33 3345566666666666666666666666654 2322 23334445
Q ss_pred HHHhcCChHHHHHHHHhcccCC---chHHHHHHHHHHhcCCHHHHHHHHhccCCCCc---chHHHHHHHHHhcCCchHHH
Q 004938 262 MYANCGCMDMAKGLFDKVLLKN---LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL---ICWSAMISGYAENNHPQEAL 335 (722)
Q Consensus 262 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~ 335 (722)
.....|++++|...+.+.++.+ .+.|+.|...+..+|++..|+..|++...-|+ .+|-.|...|-..+.+++|+
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHH
Confidence 5555677777777776664432 46788888888888888888888988866554 57888999999999999999
Q ss_pred HHHHHHHhCCCCCC-hhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-
Q 004938 336 KLFNEMQVCGMKPD-KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR- 413 (722)
Q Consensus 336 ~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 413 (722)
..|.+.... .|+ .+.+..+...|...|.++.|+..+++.++.. +.-...|+.|..++-..|++.+|.+.|++...
T Consensus 273 s~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 273 SCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 999888764 565 4567777777889999999999999998863 33367899999999999999999999998775
Q ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC-cch
Q 004938 414 --RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG-VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK-YEH 489 (722)
Q Consensus 414 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~ 489 (722)
....+.+.|...|...|..++|..+|....+ +.|.- ..++.|...|-+.|++++|+..+++..+ +.|+ ...
T Consensus 350 ~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda 424 (966)
T KOG4626|consen 350 CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADA 424 (966)
T ss_pred CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHH
Confidence 3467889999999999999999999999888 67774 4789999999999999999999999874 6776 578
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCC
Q 004938 490 YGCMVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDK 567 (722)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 567 (722)
|+.|...|...|+.+.|...+.+. .+.|. ....+.|...|...|++.+|+..|+.+++++|+.+.+|.+++....-..
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vc 504 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVC 504 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHh
Confidence 999999999999999999999887 77776 5788999999999999999999999999999999999999999888888
Q ss_pred CcchHHHHHHHH
Q 004938 568 RWQDVGELRKSM 579 (722)
Q Consensus 568 ~~~~a~~~~~~m 579 (722)
+|.+-.+.++++
T Consensus 505 dw~D~d~~~~kl 516 (966)
T KOG4626|consen 505 DWTDYDKRMKKL 516 (966)
T ss_pred cccchHHHHHHH
Confidence 888754444443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-18 Score=198.04 Aligned_cols=482 Identities=11% Similarity=0.004 Sum_probs=347.5
Q ss_pred HHHHHHHHH--hCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHH
Q 004938 85 SNKFIRAIS--WSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMY 162 (722)
Q Consensus 85 ~~~li~~~~--~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 162 (722)
+--++.++. ..|++++|++.|+...+..+. +...+..+...+...|+.++|....++.++.. +.|...+..| ..+
T Consensus 45 ~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i 121 (987)
T PRK09782 45 YPRLDKALKAQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI 121 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh
Confidence 344444443 459999999999999986544 46778888899999999999999999999874 3445555544 322
Q ss_pred HhCCCHHHHHHHHhcCCC--C-CcccHHHHHHH--------HHhCCChhHHHHHHHHHHHCCCCCCHhHHHHH-HHHHHc
Q 004938 163 GACGKILDARLMFDKMSY--R-DIVPWSVMIDG--------YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKI-LSACSR 230 (722)
Q Consensus 163 ~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~ 230 (722)
++.++|..+++++.. | +...+..+... |.+. ++|.+.++ .......|+..+.... ...|..
T Consensus 122 ---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~ 194 (987)
T PRK09782 122 ---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIY 194 (987)
T ss_pred ---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHH
Confidence 899999999999864 3 33344444444 6665 55555555 4443344556655555 889999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh-cCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhc
Q 004938 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYAN-CGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309 (722)
Q Consensus 231 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 309 (722)
.++++.+..++..+.+.+. .+......|..+|.. .++ +.+..+++...+.+...+..+...|.+.|+.++|.+++++
T Consensus 195 l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~ 272 (987)
T PRK09782 195 LKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIE 272 (987)
T ss_pred HhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 9999999999999999974 456667778888888 477 9999998876667899999999999999999999999998
Q ss_pred cCCC-----CcchH---------------------------HH---HHHH------------------------------
Q 004938 310 MVEK-----DLICW---------------------------SA---MISG------------------------------ 324 (722)
Q Consensus 310 ~~~~-----~~~~~---------------------------~~---li~~------------------------------ 324 (722)
+..- +..+| .. ++..
T Consensus 273 ~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 352 (987)
T PRK09782 273 NKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVS 352 (987)
T ss_pred CcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhc
Confidence 7321 00000 00 0111
Q ss_pred ---------------------------------HHhcCCchHHHHHHHHHHhC-C-CCCChhhHHHHHHHHHccCC---c
Q 004938 325 ---------------------------------YAENNHPQEALKLFNEMQVC-G-MKPDKVTMLSVISACAHLGV---L 366 (722)
Q Consensus 325 ---------------------------------~~~~g~~~~A~~~~~~m~~~-g-~~p~~~t~~~ll~~~~~~g~---~ 366 (722)
..+.|+.++|.++|++.... + ..++.....-++..+.+.+. .
T Consensus 353 ~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 432 (987)
T PRK09782 353 VATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATP 432 (987)
T ss_pred cccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccch
Confidence 23455666666666665541 1 12222233356666665544 2
Q ss_pred hHHHH----------------------HHHHHHHc-CC-CC--ChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHH
Q 004938 367 DQAQR----------------------IHLYIDKN-AF-GG--DLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420 (722)
Q Consensus 367 ~~a~~----------------------i~~~~~~~-~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 420 (722)
..+.. ........ +. ++ +...+..+..++.. |+.++|...|.+.....+..++
T Consensus 433 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~ 511 (987)
T PRK09782 433 AKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQ 511 (987)
T ss_pred HHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHH
Confidence 22211 12222221 11 33 56778888888887 8999999988776542223444
Q ss_pred HHHHH--HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHH
Q 004938 421 SMINA--FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFG 498 (722)
Q Consensus 421 ~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 498 (722)
.+..+ +...|++++|+..|+++... .|+...+..+..++.+.|+.++|.++++...+. .++....+..+...+.
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~ 587 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHH
Confidence 44444 46899999999999998663 566666777788899999999999999999873 2333344444444555
Q ss_pred hcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHH
Q 004938 499 RANLLREALELVETM-PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRK 577 (722)
Q Consensus 499 ~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 577 (722)
+.|++++|...+++. ...|+...|..+..++.+.|+.++|+..++++++++|+++..+..++.++...|++++|...++
T Consensus 588 ~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 588 IPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 669999999999988 6778888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCC
Q 004938 578 SMKERG 583 (722)
Q Consensus 578 ~m~~~g 583 (722)
...+..
T Consensus 668 ~AL~l~ 673 (987)
T PRK09782 668 RAHKGL 673 (987)
T ss_pred HHHHhC
Confidence 987754
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-19 Score=181.34 Aligned_cols=417 Identities=14% Similarity=0.153 Sum_probs=341.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHhcCCCCCcc---cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccC
Q 004938 156 TGLVGMYGACGKILDARLMFDKMSYRDIV---PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG 232 (722)
Q Consensus 156 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 232 (722)
..|..-..+.|++.+|++.-...-+.|.. ..-.+-.++.+..+.+....--....+. ..--..+|..+.+.+-..|
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhc
Confidence 44555566889999999877655443322 1222334566666666655443333332 2334578999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchH---HHHHHHHHHhcCCHHHHHHHHhc
Q 004938 233 NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVV---STAMVSGYSRAGQVEDARLIFDQ 309 (722)
Q Consensus 233 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~f~~ 309 (722)
+++.|...+..+++.. +..+..|..+..++...|+.+.|...|...++-|... .+.+.......|++++|...+.+
T Consensus 131 ~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlk 209 (966)
T KOG4626|consen 131 QLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLK 209 (966)
T ss_pred hHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHH
Confidence 9999999999999874 3367889999999999999999999999887655432 33455566678999999998887
Q ss_pred cCCCC---cchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCCh
Q 004938 310 MVEKD---LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD-KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDL 385 (722)
Q Consensus 310 ~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~ 385 (722)
..+.+ .++|+.|...+-.+|+...|+..|++.... .|+ ...|..+...+...+.++.|...+..+.... +...
T Consensus 210 Ai~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A 286 (966)
T KOG4626|consen 210 AIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHA 286 (966)
T ss_pred HHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccch
Confidence 75543 578999999999999999999999999874 555 3568888888999999999999888877642 3346
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHH
Q 004938 386 RVNNAIIDMYAKCGSLESAREVFERMRR--RN-VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG-VTFIGVLYAC 461 (722)
Q Consensus 386 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~ 461 (722)
.++..+...|...|.+|.|...|++..+ |+ ...|+.|..++-..|+..+|...|.+.+. +.|+. ...+.|...+
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIY 364 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHH
Confidence 6677788889999999999999999875 44 46899999999999999999999999988 57775 4789999999
Q ss_pred HhcCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHH
Q 004938 462 SHAGLVDEGREIFASMTNEYNIPPK-YEHYGCMVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAACRVHGEIELA 538 (722)
Q Consensus 462 ~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a 538 (722)
...|.+++|..+|....+ +.|. ....+.|...|-.+|++++|+..+++. .++|+ ...++.+...|...|+.+.|
T Consensus 365 ~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred HHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHH
Confidence 999999999999998875 3444 577899999999999999999999988 88897 47999999999999999999
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 539 EFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 539 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
...+.+++..+|--..++.+|+.+|...|+..+|+.-++...+.
T Consensus 442 ~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 442 IQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999988764
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.8e-18 Score=190.19 Aligned_cols=418 Identities=14% Similarity=0.048 Sum_probs=288.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCC--CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHcc
Q 004938 155 QTGLVGMYGACGKILDARLMFDKMS--YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP-DEMVLSKILSACSRA 231 (722)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~ 231 (722)
+..+...|.+.|++++|+..|++.. .|+...|..+..+|.+.|++++|++.+....+. .| +...+..+..++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHc
Confidence 4455667777788888888887654 355566777777777888888888888777664 33 345666777777777
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccC
Q 004938 232 GNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311 (722)
Q Consensus 232 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 311 (722)
|++++|..-+..+...+...+... ..++..+.+......+...++.- ..+...+..+.. |....+...+..-++...
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhccc
Confidence 888877776665544422212221 11222111111123333333221 122233333322 222111111111122211
Q ss_pred CCCc---chHHHHHHHH---HhcCCchHHHHHHHHHHhCC-CCC-ChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCC
Q 004938 312 EKDL---ICWSAMISGY---AENNHPQEALKLFNEMQVCG-MKP-DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG 383 (722)
Q Consensus 312 ~~~~---~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~ 383 (722)
+.+. ..+..+...+ ...+++++|++.|++..+.+ ..| +...+..+...+...|++++|...++.+++.. +.
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~ 363 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PR 363 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC
Confidence 1111 1121121111 23478999999999998765 234 34567777777889999999999999998863 33
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 004938 384 DLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLY 459 (722)
Q Consensus 384 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 459 (722)
....|..+...+...|++++|...|++..+ .+...|..+...+...|++++|+..|++.++. .|+ ...+..+..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~ 441 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGV 441 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHH
Confidence 466788889999999999999999998764 45788999999999999999999999999884 565 456777888
Q ss_pred HHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-------H-HHHHHHHHHH
Q 004938 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPNV-------V-IWGSLMAACR 530 (722)
Q Consensus 460 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-------~-~~~~ll~~~~ 530 (722)
++.+.|++++|...|+...+ ..+.+...|+.+..+|...|++++|++.|++. ...|+. . .++..+..+.
T Consensus 442 ~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH
Confidence 99999999999999999987 44556788999999999999999999999986 444431 1 1222222344
Q ss_pred HcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
..|++++|...++++++++|++...+..++.+|...|++++|.+.+++..+.
T Consensus 520 ~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 520 WKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4699999999999999999999889999999999999999999999998764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-18 Score=184.42 Aligned_cols=268 Identities=13% Similarity=0.112 Sum_probs=178.1
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHH
Q 004938 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPD---KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIID 393 (722)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 393 (722)
+|..+...+...|++++|+.+++.+...+..++ ..++..+...+...|++++|..++..+.+.. +.+..+++.++.
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~ 149 (389)
T PRK11788 71 LHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLE 149 (389)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHH
Confidence 445555555555555555555555554321111 1234445555555566666666665555432 234455566666
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC--------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Q 004938 394 MYAKCGSLESAREVFERMRRRN--------VISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHA 464 (722)
Q Consensus 394 ~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~ 464 (722)
.|.+.|++++|.+.|+.+.+.+ ...|..+...+...|++++|+..|+++.+. .|+ ...+..+...+.+.
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~ 227 (389)
T PRK11788 150 IYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLALAQ 227 (389)
T ss_pred HHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHC
Confidence 6666666666666666654311 123455666777788888888888887764 344 34666677778888
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004938 465 GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPNVVIWGSLMAACRVHGEIELAEFAAK 543 (722)
Q Consensus 465 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 543 (722)
|++++|.++|+++.+. ........+..++.+|.+.|++++|.+.++++ ...|+...+..+...+.+.|++++|...++
T Consensus 228 g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~ 306 (389)
T PRK11788 228 GDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLR 306 (389)
T ss_pred CCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 8888888888887752 11111355677888888888888888888887 456777667888888999999999999999
Q ss_pred HHHccCCCCCchHHHHHHHhhh---CCCcchHHHHHHHHHhCCCccCCc
Q 004938 544 QLLQLDPDHDGALVLLSNIYAK---DKRWQDVGELRKSMKERGILKERA 589 (722)
Q Consensus 544 ~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~ 589 (722)
++++..|++.. +..+...+.. .|+.+++..++++|.+++++++|.
T Consensus 307 ~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 307 EQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 99999998764 4444444432 568999999999999999988886
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.5e-18 Score=180.71 Aligned_cols=298 Identities=10% Similarity=0.043 Sum_probs=140.9
Q ss_pred HHhCCCHHHHHHHHhcCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHccCChH
Q 004938 162 YGACGKILDARLMFDKMSYR---DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD---EMVLSKILSACSRAGNLS 235 (722)
Q Consensus 162 ~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~ 235 (722)
+...|++++|...|+++... +..+|..+...+.+.|++++|+.+++.+...+..++ ..++..+...+...|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 44556666666666666432 223455566666666666666666666655322111 123445555555555555
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCc
Q 004938 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315 (722)
Q Consensus 236 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~ 315 (722)
.|..++..+.+.. +.+..+++.++..|.+.|++++|.+.++++...+...... ...
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----------------------~~~ 180 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV-----------------------EIA 180 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH-----------------------HHH
Confidence 5655555555432 2344455555555555555555555555543221100000 000
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 004938 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395 (722)
Q Consensus 316 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 395 (722)
..|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+.+.|++++|.+++..+.+.+......+++.++..|
T Consensus 181 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~ 259 (389)
T PRK11788 181 HFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECY 259 (389)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHH
Confidence 122334444445555555555555554431 1122333444444445555555555555544432111123344455555
Q ss_pred HhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHH
Q 004938 396 AKCGSLESAREVFERMRR--RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH---AGLVDEG 470 (722)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~---~g~~~~a 470 (722)
.+.|++++|...++++.+ |+...+..++..+.+.|++++|+.+|+++.+. .|+..++..++..+.. .|+.+++
T Consensus 260 ~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a 337 (389)
T PRK11788 260 QALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKES 337 (389)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhH
Confidence 555555555555554432 33334444555555555555555555555442 4555555544444332 2345555
Q ss_pred HHHHHHhHhhcCCCCCc
Q 004938 471 REIFASMTNEYNIPPKY 487 (722)
Q Consensus 471 ~~~~~~~~~~~~~~~~~ 487 (722)
..+++.+.++ ++.|++
T Consensus 338 ~~~~~~~~~~-~~~~~p 353 (389)
T PRK11788 338 LLLLRDLVGE-QLKRKP 353 (389)
T ss_pred HHHHHHHHHH-HHhCCC
Confidence 5555555542 344443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-16 Score=182.29 Aligned_cols=400 Identities=11% Similarity=0.040 Sum_probs=236.2
Q ss_pred chhhHHHHHHHHHhCCCHHHHHHHHhcCCC-C--CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 004938 151 DPFVQTGLVGMYGACGKILDARLMFDKMSY-R--DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSA 227 (722)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 227 (722)
+.....-.+......|+.++|++++.+... . +...+..+...+...|++++|.++|++..+.. +.+...+..+...
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~ 92 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILT 92 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 333444455556666777777777666543 1 22236666666777777777777777665531 2234445555556
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccC---CchHHHHHHHHHHhcCCHHHHH
Q 004938 228 CSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK---NLVVSTAMVSGYSRAGQVEDAR 304 (722)
Q Consensus 228 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~ 304 (722)
+...|+.++|...++.+++.. +.+.. +..+..++...|+.++|...++++... +...+..+...+.+.|..++|+
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Confidence 666677777777776666652 33444 666666666666666666666665332 2233334444444455555555
Q ss_pred HHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHH-----HccCCc---hHHHHHHHHH
Q 004938 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC-----AHLGVL---DQAQRIHLYI 376 (722)
Q Consensus 305 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-----~~~g~~---~~a~~i~~~~ 376 (722)
..++.... ++.....+ . .......+... ...+++ ++|.+.++.+
T Consensus 171 ~~l~~~~~-~p~~~~~l-------------------------~--~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~l 222 (765)
T PRK10049 171 GAIDDANL-TPAEKRDL-------------------------E--ADAAAELVRLSFMPTRSEKERYAIADRALAQYDAL 222 (765)
T ss_pred HHHHhCCC-CHHHHHHH-------------------------H--HHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHH
Confidence 55544433 11100000 0 00000111111 011122 4555555555
Q ss_pred HHc-CCCCChh-HH-HH---HHHHHHhcCCHHHHHHHHHhcCCCC---h-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 004938 377 DKN-AFGGDLR-VN-NA---IIDMYAKCGSLESAREVFERMRRRN---V-ISWTSMINAFAIHGDARNALIFFNKMKDES 446 (722)
Q Consensus 377 ~~~-~~~~~~~-~~-~~---li~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 446 (722)
.+. ...|+.. .+ .. .+..+...|++++|...|+.+.+.+ + ..-..+...|...|++++|+..|+++...
T Consensus 223 l~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~- 301 (765)
T PRK10049 223 EALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH- 301 (765)
T ss_pred HhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc-
Confidence 543 1122211 11 01 1223345677788888887776521 1 11122456777788888888888877653
Q ss_pred CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcC----------CCCC---cchHHHHHHHHHhcCCHHHHHH
Q 004938 447 IDPN-----GVTFIGVLYACSHAGLVDEGREIFASMTNEYN----------IPPK---YEHYGCMVDLFGRANLLREALE 508 (722)
Q Consensus 447 ~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~li~~~~~~g~~~~A~~ 508 (722)
.|. ......+..++...|++++|.++++.+..... -.|+ ...+..+..++...|++++|++
T Consensus 302 -~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 302 -PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred -CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 232 23455556677788888888888887775210 0122 1234567778888899999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 509 LVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 509 ~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
.++++ ...| +...+..+...+...|++++|+..++++++++|++...+..++..+...|+|++|..+++.+.+..
T Consensus 381 ~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 381 RARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99887 3344 467888888888899999999999999999999998888888888999999999999998887643
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-16 Score=177.33 Aligned_cols=354 Identities=10% Similarity=0.013 Sum_probs=210.3
Q ss_pred hCCCHHHHHHHHhcCCCC------CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHH
Q 004938 164 ACGKILDARLMFDKMSYR------DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237 (722)
Q Consensus 164 ~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 237 (722)
+..+++.---+|..-++. +......++..+.+.|++++|..+++........+ ...+..+..+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHH
Confidence 445555555555554432 22234556777788888888888888887653332 33444444555667888888
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcch
Q 004938 238 EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLIC 317 (722)
Q Consensus 238 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~ 317 (722)
...++.+++.. +.+...+..+...+.+.|++++|...|++.... ...+...
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l----------------------------~P~~~~a 146 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA----------------------------FSGNSQI 146 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------------CCCcHHH
Confidence 88888887764 335666777777788888888888776665321 1113334
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 004938 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397 (722)
Q Consensus 318 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 397 (722)
|..+...+...|++++|...++.+.... |+.......+..+...|++++|...+..+++....++......+...+.+
T Consensus 147 ~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~ 224 (656)
T PRK15174 147 FALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCA 224 (656)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence 4455555555555555555555544332 22211111122344555555555555555443222222333334455556
Q ss_pred cCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHH
Q 004938 398 CGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARN----ALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDE 469 (722)
Q Consensus 398 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 469 (722)
.|++++|...|++..+ .+...+..+...|...|++++ |+..|++..+ +.|+ ...+..+...+...|++++
T Consensus 225 ~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~e 302 (656)
T PRK15174 225 VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEK 302 (656)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHH
Confidence 6666666666665543 244556666666666666664 6777777766 3454 3456666677777777777
Q ss_pred HHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHc
Q 004938 470 GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPNVVIW-GSLMAACRVHGEIELAEFAAKQLLQ 547 (722)
Q Consensus 470 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~ 547 (722)
|...++.+.+ ..+.+...+..+..+|.+.|++++|++.++++ ...|+...+ ..+..++...|+.++|...|+++++
T Consensus 303 A~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 303 AIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777765 22334455666777777777777777777766 345554333 3345567777888888888888887
Q ss_pred cCCCCC
Q 004938 548 LDPDHD 553 (722)
Q Consensus 548 ~~p~~~ 553 (722)
..|++.
T Consensus 381 ~~P~~~ 386 (656)
T PRK15174 381 ARASHL 386 (656)
T ss_pred hChhhc
Confidence 777753
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-16 Score=181.13 Aligned_cols=415 Identities=11% Similarity=0.018 Sum_probs=289.5
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCC---CCcccHHHHHHH
Q 004938 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY---RDIVPWSVMIDG 192 (722)
Q Consensus 116 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~ 192 (722)
+..-..-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++... .+...+..++..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~ 92 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILT 92 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44455666777888999999999999987633 45566788999999999999999999998543 345568888899
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHH
Q 004938 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMA 272 (722)
Q Consensus 193 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 272 (722)
+...|++++|+..+++..+. -+.+.. +..+..++...|+.+.|...++.+++... .+...+..+...+.+.|..+.|
T Consensus 93 l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHH
Confidence 99999999999999999876 233444 77788888999999999999999999753 3666777788899999999999
Q ss_pred HHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCc---hHHHHHHHHHHhC-CCCC
Q 004938 273 KGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHP---QEALKLFNEMQVC-GMKP 348 (722)
Q Consensus 273 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~-g~~p 348 (722)
.+.+++... +...... +. ...+....+- .+.......+++ ++|++.++.+.+. ...|
T Consensus 170 l~~l~~~~~-~p~~~~~-l~-------~~~~~~~~r~----------~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p 230 (765)
T PRK10049 170 LGAIDDANL-TPAEKRD-LE-------ADAAAELVRL----------SFMPTRSEKERYAIADRALAQYDALEALWHDNP 230 (765)
T ss_pred HHHHHhCCC-CHHHHHH-HH-------HHHHHHHHHh----------hcccccChhHHHHHHHHHHHHHHHHHhhcccCC
Confidence 999988765 2210000 00 0000000000 000001111222 5566666666543 1122
Q ss_pred Chh-hHH----HHHHHHHccCCchHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------
Q 004938 349 DKV-TML----SVISACAHLGVLDQAQRIHLYIDKNAFG-GDLRVNNAIIDMYAKCGSLESAREVFERMRRRN------- 415 (722)
Q Consensus 349 ~~~-t~~----~ll~~~~~~g~~~~a~~i~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------- 415 (722)
+.. .+. ..+.++...|++++|+..|+.+.+.+.+ |+ .....+...|...|++++|...|+++.+.+
T Consensus 231 ~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~ 309 (765)
T PRK10049 231 DATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLS 309 (765)
T ss_pred ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCC
Confidence 221 111 1123344556777777777777665421 21 122224566777777777777777765321
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhHhhc
Q 004938 416 VISWTSMINAFAIHGDARNALIFFNKMKDES-----------IDPNG---VTFIGVLYACSHAGLVDEGREIFASMTNEY 481 (722)
Q Consensus 416 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 481 (722)
...+..+..++...|++++|++.++++.... -.|+. ..+..+...+...|+.++|++.++.+..
T Consensus 310 ~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~-- 387 (765)
T PRK10049 310 DEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY-- 387 (765)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 2334555666777888888888888877631 12332 2345666788899999999999999987
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchH
Q 004938 482 NIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL 556 (722)
Q Consensus 482 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 556 (722)
..|.+...+..+..++...|++++|++.+++. ...|+ ...+..+...+...|++++|+.+++++++..|+++.+.
T Consensus 388 ~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 388 NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 45667788999999999999999999999988 56676 56677777788899999999999999999999997543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.7e-16 Score=163.21 Aligned_cols=541 Identities=13% Similarity=0.085 Sum_probs=376.6
Q ss_pred hhHHHHHHHHHHHhcCCCCCCchhHHHHHHHhccCCCCCCCChHHHHHHhccC----C--CCCcchHHHHHHHHHhCCCc
Q 004938 25 LTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQI----P--APPSRVSNKFIRAISWSHRP 98 (722)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~g~~~~A~~~f~~~----~--~~~~~~~~~li~~~~~~g~~ 98 (722)
+..+.+.+..+++.++ ..-+++.-..--+|.+ +++..|..+|... | .||+. -.+-.++.+.|+.
T Consensus 146 ~~~A~a~F~~Vl~~sp---~Nil~LlGkA~i~ynk-----kdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~ 215 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSP---DNILALLGKARIAYNK-----KDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMS 215 (1018)
T ss_pred HHHHHHHHHHHHhhCC---cchHHHHHHHHHHhcc-----ccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccch
Confidence 4455555556666554 3334444444445666 8999999999762 1 13432 2233566789999
Q ss_pred hHHHHHHHHHHHCCCCCCcccHHHHHHHHH---hcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHHHHH
Q 004938 99 KHALKVFLKMLNEGLTIDRFSFPPILKAIA---RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175 (722)
Q Consensus 99 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f 175 (722)
+.|+..|.+..+..+. ++.++..|--.-. .......|.+.+...-+.. +.++.+.+.|.+.|.-.|++..+..+.
T Consensus 216 ~~a~~a~~ralqLdp~-~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la 293 (1018)
T KOG2002|consen 216 EKALLAFERALQLDPT-CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLA 293 (1018)
T ss_pred hhHHHHHHHHHhcChh-hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHH
Confidence 9999999999885431 2222222211111 2234556666666665544 668889999999999999999999988
Q ss_pred hcCCCCC------cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhH--HHHHHHHHHccCChHHHHHHHHHHHHc
Q 004938 176 DKMSYRD------IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV--LSKILSACSRAGNLSYGEAVHEFIIDN 247 (722)
Q Consensus 176 ~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~~~~~~ 247 (722)
..+.... ..+|-.+.++|-..|++++|...|.+..+. .||.++ +.-+...+...|+++.+...|+.+.+.
T Consensus 294 ~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~ 371 (1018)
T KOG2002|consen 294 EHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ 371 (1018)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh
Confidence 7765432 224778899999999999999999887654 455544 445677889999999999999999987
Q ss_pred CCCCCHhHHHHHHHHHHhcC----ChHHHHHHHHhcccC---CchHHHHHHHHHHhcCCH------HHHHHHHhcc-CCC
Q 004938 248 NVALDAHLQSTLITMYANCG----CMDMAKGLFDKVLLK---NLVVSTAMVSGYSRAGQV------EDARLIFDQM-VEK 313 (722)
Q Consensus 248 g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~------~~A~~~f~~~-~~~ 313 (722)
. +.+..+...|...|+..+ ..+.|..++.+...+ |...|-.+...|-...-+ ..|..++..- ...
T Consensus 372 ~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~i 450 (1018)
T KOG2002|consen 372 L-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQI 450 (1018)
T ss_pred C-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCC
Confidence 3 556777778888887775 568888888888665 455666666665444332 3344333332 223
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHHhC---CCCCChh------hHHHHHHHHHccCCchHHHHHHHHHHHcCCCCC
Q 004938 314 DLICWSAMISGYAENNHPQEALKLFNEMQVC---GMKPDKV------TMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384 (722)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~------t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~ 384 (722)
.+...|.+...+...|++++|...|.+.... ...+|.. +--.+....-..++.+.|.++|..+++.. +.-
T Consensus 451 p~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~Y 529 (1018)
T KOG2002|consen 451 PPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGY 529 (1018)
T ss_pred CHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chh
Confidence 5677899999999999999999999988654 2233331 22234445567789999999999998863 222
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHH
Q 004938 385 LRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDES-IDPNGVTFIGVLYA 460 (722)
Q Consensus 385 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a 460 (722)
+..|-.+.-+.-..+...+|...++.... .|+..|+-+...+.....+..|-+-|....+.- ..+|..+..+|.+.
T Consensus 530 Id~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~ 609 (1018)
T KOG2002|consen 530 IDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNV 609 (1018)
T ss_pred HHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHH
Confidence 33344444333344677788888887764 677788888888888888888888776665421 23677777777775
Q ss_pred HHh------------cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 004938 461 CSH------------AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM--PFAPNVVIWGSLM 526 (722)
Q Consensus 461 ~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll 526 (722)
|.. .+..++|+++|..+.+ ..|.+...-|-+.-.++..|++.+|.++|.+. ....+..+|-.+.
T Consensus 610 ~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNla 687 (1018)
T KOG2002|consen 610 YIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLA 687 (1018)
T ss_pred HHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHH
Confidence 543 2456788888888876 55667777788888889999999999999887 2223456788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHccC--CCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 527 AACRVHGEIELAEFAAKQLLQLD--PDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 527 ~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
..|...|++-.|+++|+..+... .+++.....|+.++.+.|+|.+|.+.........
T Consensus 688 h~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 688 HCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 88999999999999999887642 3455677788999999999999988877776543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-15 Score=171.54 Aligned_cols=435 Identities=11% Similarity=0.023 Sum_probs=281.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCCC---CcccHHHHHHHHHhCCC
Q 004938 122 PILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR---DIVPWSVMIDGYFQNGL 198 (722)
Q Consensus 122 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~ 198 (722)
.....+.+.|+++.|...|...++. .|+...|..+..+|.+.|++++|+..++...+. +...|..+..+|...|+
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 3445556667777777777776654 455666666777777777777777777665432 33356667777777777
Q ss_pred hhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHh
Q 004938 199 FDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278 (722)
Q Consensus 199 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 278 (722)
+++|+.-|......+- .+......++..... ..+.......++.. +.+...+..+.. |......+.+..-++.
T Consensus 210 ~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 210 YADALLDLTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLED 282 (615)
T ss_pred HHHHHHHHHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhc
Confidence 7777776665543311 111111111111111 11222222222221 112222222222 2211111111111111
Q ss_pred cccCCc---hHHHHHHHH---HHhcCCHHHHHHHHhccCCC------CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 004938 279 VLLKNL---VVSTAMVSG---YSRAGQVEDARLIFDQMVEK------DLICWSAMISGYAENNHPQEALKLFNEMQVCGM 346 (722)
Q Consensus 279 ~~~~~~---~~~~~li~~---~~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 346 (722)
..+.+. ..+..+... ....+++++|.+.|+...+. +...|+.+...+...|++++|+..|++..+.
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l-- 360 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL-- 360 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Confidence 111111 111111111 12346778888888876532 3456888888899999999999999998875
Q ss_pred CCC-hhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHH
Q 004938 347 KPD-KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSM 422 (722)
Q Consensus 347 ~p~-~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 422 (722)
.|+ ..+|..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|...|++..+ .+...|..+
T Consensus 361 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~l 439 (615)
T TIGR00990 361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQL 439 (615)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHH
Confidence 454 4577788888889999999999999988864 45678888999999999999999999998864 356778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC-cch-------HHHH
Q 004938 423 INAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK-YEH-------YGCM 493 (722)
Q Consensus 423 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~-------~~~l 493 (722)
...+.+.|++++|+..|++.+.. .|+ ...+..+...+...|++++|...|+..... .|+ ... ++..
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a 514 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKA 514 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHH
Confidence 88999999999999999998874 555 567888888999999999999999998762 222 111 1222
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcch
Q 004938 494 VDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQD 571 (722)
Q Consensus 494 i~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 571 (722)
...+...|++++|.+++++. ...|+ ...+..+...+...|++++|...|++++++.+.....+ ....|.+
T Consensus 515 ~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~--------~a~~~~~ 586 (615)
T TIGR00990 515 LALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV--------QAISYAE 586 (615)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH--------HHHHHHH
Confidence 23344579999999999986 56665 45788999999999999999999999999887644322 2223446
Q ss_pred HHHHHHHHHh
Q 004938 572 VGELRKSMKE 581 (722)
Q Consensus 572 a~~~~~~m~~ 581 (722)
|.++....++
T Consensus 587 a~~~~~~~~~ 596 (615)
T TIGR00990 587 ATRTQIQVQE 596 (615)
T ss_pred HHHHHHHHHH
Confidence 6666555544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.9e-16 Score=172.21 Aligned_cols=321 Identities=9% Similarity=-0.029 Sum_probs=245.3
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHH
Q 004938 223 KILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302 (722)
Q Consensus 223 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 302 (722)
.++..+.+.|+++.|..++..++..... +......++......|++++|...
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~--------------------------- 98 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQV--------------------------- 98 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHH---------------------------
Confidence 3444455556666666665555554322 233333333444445555555555
Q ss_pred HHHHHhccCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCCchHHHHHHHHHHH
Q 004938 303 ARLIFDQMVE---KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP-DKVTMLSVISACAHLGVLDQAQRIHLYIDK 378 (722)
Q Consensus 303 A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~ 378 (722)
|+++.. .+...|..+...+.+.|++++|+..|+++... .| +...+..+..++...|++++|...+..+..
T Consensus 99 ----l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 99 ----VNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred ----HHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 555533 24567888889999999999999999999875 45 456677788899999999999999998877
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHH
Q 004938 379 NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR----NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVT 453 (722)
Q Consensus 379 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t 453 (722)
.... +...+..+ ..+...|++++|...++.+.+. +...+..+...+...|++++|+..|+++.+. .|+ ...
T Consensus 173 ~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~ 248 (656)
T PRK15174 173 EVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAAL 248 (656)
T ss_pred hCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHH
Confidence 6432 33344333 3478899999999999987652 2334455667888999999999999999985 455 556
Q ss_pred HHHHHHHHHhcCCHHH----HHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 004938 454 FIGVLYACSHAGLVDE----GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMA 527 (722)
Q Consensus 454 ~~~ll~a~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~ 527 (722)
+..+...+...|++++ |...|+.+.+ ..|.+...+..+..++.+.|++++|+..+++. ...|+ ...+..+..
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~ 326 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 7788889999999986 8999999987 34556788999999999999999999999988 45565 567888889
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 528 ACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 528 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
++...|++++|...++++++.+|++...+..++.++...|++++|.+.++...+..
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999988777778899999999999999999987654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.7e-15 Score=165.03 Aligned_cols=421 Identities=10% Similarity=0.070 Sum_probs=242.6
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCCCCcccHHH-H--HHHHHhCCChhHHH
Q 004938 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV-M--IDGYFQNGLFDEVL 203 (722)
Q Consensus 127 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~-l--i~~~~~~g~~~~A~ 203 (722)
..+.|++..|...+.++.+........++ .++..+...|+.++|+..+++...|+...+.. + ...|...|++++|+
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 56788999999999998876532223344 78888888899999999999888775555443 3 44677779999999
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccC-
Q 004938 204 NLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK- 282 (722)
Q Consensus 204 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 282 (722)
++|+++.+.. +-|...+..++..+...++.++|.+.++.+.+. .|+...+..++..+...++..+|.+.++++.+.
T Consensus 123 ely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 123 ALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 9999998763 224556667777788889999999888888776 344555555555555566666688888888543
Q ss_pred --CchHHHHHHHHHHhcCCHHHHHHHHhccCCC-CcchHHHH----HHHHHhcC---------C---chHHHHHHHHHHh
Q 004938 283 --NLVVSTAMVSGYSRAGQVEDARLIFDQMVEK-DLICWSAM----ISGYAENN---------H---PQEALKLFNEMQV 343 (722)
Q Consensus 283 --~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~l----i~~~~~~g---------~---~~~A~~~~~~m~~ 343 (722)
+...+..+...+.+.|-...|+++..+-+.- +...+.-+ +.-.++.+ + .+.|+.-++.+..
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~ 279 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLT 279 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHh
Confidence 4556677777788888888888777765432 11111111 11111111 1 1234444444332
Q ss_pred C-CCCCCh-hh----HHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---
Q 004938 344 C-GMKPDK-VT----MLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR--- 414 (722)
Q Consensus 344 ~-g~~p~~-~t----~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--- 414 (722)
. +-.|.. .- ..-.+-++...|+..++++.++.+...+.+....+-.++.++|...+++++|..+|..+...
T Consensus 280 ~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~ 359 (822)
T PRK14574 280 RWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK 359 (822)
T ss_pred hccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc
Confidence 1 111221 11 11223345555666666666666655554444445555666666666666666666655321
Q ss_pred ------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------CCC--HH-HHHHHHHHHHhcCCHHHHHHHH
Q 004938 415 ------NVISWTSMINAFAIHGDARNALIFFNKMKDESI-----------DPN--GV-TFIGVLYACSHAGLVDEGREIF 474 (722)
Q Consensus 415 ------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~--~~-t~~~ll~a~~~~g~~~~a~~~~ 474 (722)
+......|.-+|...+++++|..+++++.+.-. .|| -. .+..++..+...|++.+|++.+
T Consensus 360 ~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l 439 (822)
T PRK14574 360 TFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL 439 (822)
T ss_pred ccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 112234455555566666666666666655200 111 11 2233344455555666666666
Q ss_pred HHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 004938 475 ASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552 (722)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 552 (722)
+.+.. .-|-|......+.+++...|.+.+|++.++.. ...|+ ..+...++.+....+++++|..+.+.+++..|++
T Consensus 440 e~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 440 EDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred HHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCc
Confidence 55544 33445555555555555566666665555444 33443 2344444445555555555655555555555555
Q ss_pred C
Q 004938 553 D 553 (722)
Q Consensus 553 ~ 553 (722)
+
T Consensus 518 ~ 518 (822)
T PRK14574 518 I 518 (822)
T ss_pred h
Confidence 4
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.7e-14 Score=151.38 Aligned_cols=552 Identities=12% Similarity=0.069 Sum_probs=391.4
Q ss_pred HHHhhC-----CChhHHHHHHHHHHHhcCCCCCCchhHHHHHHHhccCCCCCCCChHHHHHHhccCCCCCcchHHHHHHH
Q 004938 17 TAISSC-----SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRA 91 (722)
Q Consensus 17 ~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~ 91 (722)
.+-++| .+...+..++..++...+ +..+|+.+... ..+.+ + |..+.|...|....+-|...-++++..
T Consensus 167 LlGkA~i~ynkkdY~~al~yyk~al~inp-~~~aD~rIgig--~Cf~k--l--~~~~~a~~a~~ralqLdp~~v~alv~L 239 (1018)
T KOG2002|consen 167 LLGKARIAYNKKDYRGALKYYKKALRINP-ACKADVRIGIG--HCFWK--L--GMSEKALLAFERALQLDPTCVSALVAL 239 (1018)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHhcCc-ccCCCccchhh--hHHHh--c--cchhhHHHHHHHHHhcChhhHHHHHHH
Confidence 344666 567777777777665543 12455544322 22334 6 888998888877655444333433332
Q ss_pred H---HhC---CCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc--hhhHHHHHHHHH
Q 004938 92 I---SWS---HRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSD--PFVQTGLVGMYG 163 (722)
Q Consensus 92 ~---~~~---g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~ 163 (722)
. ... ..+..++.++...-... .-|+...+.|.+-+.-.++++.+..+...++....... ...|--+..+|-
T Consensus 240 ~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H 318 (1018)
T KOG2002|consen 240 GEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH 318 (1018)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 1 112 23455666666655432 22667788888888899999999999998887642211 223556788999
Q ss_pred hCCCHHHHHHHHhcCCCC---C-cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccC----ChH
Q 004938 164 ACGKILDARLMFDKMSYR---D-IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG----NLS 235 (722)
Q Consensus 164 ~~g~~~~A~~~f~~m~~~---~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----~~~ 235 (722)
..|+++.|...|.+.... + +.++--|...|.+.|+.+.+...|+..... .+-+..|...+-..|+..+ ..+
T Consensus 319 a~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d 397 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRD 397 (1018)
T ss_pred hhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHH
Confidence 999999999999876542 2 445677889999999999999999999875 2334556666666666554 456
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhc--------ccCCchHHHHHHHHHHhcCCHHHHHHHH
Q 004938 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV--------LLKNLVVSTAMVSGYSRAGQVEDARLIF 307 (722)
Q Consensus 236 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~f 307 (722)
.|..++....+.- +.|...|-.+..+|-...-+. ++.+|... ....+...|.+...+...|+++.|...|
T Consensus 398 ~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f 475 (1018)
T KOG2002|consen 398 KASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHF 475 (1018)
T ss_pred HHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHH
Confidence 7777777777664 557777877777776554332 24444333 3346778899999999999999999999
Q ss_pred hccCCC-------Cc------chHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHH-HHHHHHHccCCchHHHHHH
Q 004938 308 DQMVEK-------DL------ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTML-SVISACAHLGVLDQAQRIH 373 (722)
Q Consensus 308 ~~~~~~-------~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~g~~~~a~~i~ 373 (722)
.+.... |. .+-..+...+-..++.+.|.+.|...... .|.-++-- -++......+...+|...+
T Consensus 476 ~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~l 553 (1018)
T KOG2002|consen 476 KSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLL 553 (1018)
T ss_pred HHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHH
Confidence 876332 22 12233556667778999999999999885 46554432 2322223456788899888
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChHHHHHHHHHHH------------HcCCHHHHH
Q 004938 374 LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR-----RNVISWTSMINAFA------------IHGDARNAL 436 (722)
Q Consensus 374 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~------------~~g~~~~A~ 436 (722)
..+...+ ..++.+++-+.+.|.+...+..|.+-|..+.+ +|+.+.-+|.+.|. ..+..++|+
T Consensus 554 k~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAl 632 (1018)
T KOG2002|consen 554 KDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKAL 632 (1018)
T ss_pred HHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHH
Confidence 8887753 55667777788899999999999887666543 46666656666444 234578899
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC---
Q 004938 437 IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM--- 513 (722)
Q Consensus 437 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--- 513 (722)
++|.+.++. -+-|...-+.+.-.++..|++.+|..+|..+.+. ......+|-.+...|..+|++..|+++|+..
T Consensus 633 q~y~kvL~~-dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 633 QLYGKVLRN-DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred HHHHHHHhc-CcchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998884 2335567788888899999999999999999984 3345678899999999999999999999876
Q ss_pred -CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhh-------------------CCCcchHH
Q 004938 514 -PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAK-------------------DKRWQDVG 573 (722)
Q Consensus 514 -~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-------------------~g~~~~a~ 573 (722)
.-..+..+...|..++...|.+.+|.+.+..++.+.|.++....+++-+..+ .+..+.|.
T Consensus 710 f~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~ 789 (1018)
T KOG2002|consen 710 FYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEAR 789 (1018)
T ss_pred hcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 2344678889999999999999999999999999999999877776655443 34567788
Q ss_pred HHHHHHHhCCCc
Q 004938 574 ELRKSMKERGIL 585 (722)
Q Consensus 574 ~~~~~m~~~g~~ 585 (722)
++|..|...+-+
T Consensus 790 r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 790 RLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHhcCCC
Confidence 888888765543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-14 Score=160.33 Aligned_cols=412 Identities=11% Similarity=-0.018 Sum_probs=221.9
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCc--ccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHH
Q 004938 92 ISWSHRPKHALKVFLKMLNEGLTIDR--FSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKIL 169 (722)
Q Consensus 92 ~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 169 (722)
..+.|++..|++.|++..+.. |+. ..+ .++..+...|+.++|...+++.+... +........+...|...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHH
Confidence 346677777777777766543 332 122 55566666677777777666665110 111222222244666667777
Q ss_pred HHHHHHhcCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHH
Q 004938 170 DARLMFDKMSYR---DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246 (722)
Q Consensus 170 ~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 246 (722)
+|+++|+++.+. |...+..++..|...++.++|++.++++... .|+...+..++..+...++...|.+.++.+++
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 777777766542 2333555566666667777777777666553 44444443333333334444446666666666
Q ss_pred cCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccC-CchH--H------HHHHHHH-----HhcCC---HHHHHHHHhc
Q 004938 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK-NLVV--S------TAMVSGY-----SRAGQ---VEDARLIFDQ 309 (722)
Q Consensus 247 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~--~------~~li~~~-----~~~g~---~~~A~~~f~~ 309 (722)
.. +.+...+..++..+.+.|-...|.++..+-+.- +... | ..++..- ....+ .+.|+.-++.
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 63 335566666666667777666666665554311 0000 0 0111000 01111 2223333333
Q ss_pred cCC---CCc---ch----HHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHc
Q 004938 310 MVE---KDL---IC----WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKN 379 (722)
Q Consensus 310 ~~~---~~~---~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~ 379 (722)
+.. +++ .. .--.+-++...|++.++++.|+.|...|.+....+-..+..+|...+.+++|..++..+...
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 322 111 11 11234456666677777777777766665434446666666777777777777777766553
Q ss_pred C-----CCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-------------Ch---HHHHHHHHHHHHcCCHHHHH
Q 004938 380 A-----FGGDLRVNNAIIDMYAKCGSLESAREVFERMRR--R-------------NV---ISWTSMINAFAIHGDARNAL 436 (722)
Q Consensus 380 ~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-------------~~---~~~~~li~~~~~~g~~~~A~ 436 (722)
. .+++......|.-+|...+++++|..+++.+.+ | |. ..+..++..+...|+..+|+
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 2 122233345666666667777777777766653 1 00 12233455566667777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 004938 437 IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513 (722)
Q Consensus 437 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 513 (722)
+.++++... -+-|......+...+...|.+.+|++.++.+.. -.|-+..+....+..+...|++++|..+.+..
T Consensus 437 ~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 437 KKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 777776653 122444556666666667777777777755443 22333455556666666667777776666555
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-12 Score=131.35 Aligned_cols=498 Identities=13% Similarity=0.111 Sum_probs=390.4
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHH
Q 004938 81 PSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160 (722)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 160 (722)
++..|... +.-...+.|.-++.+..+. -|. -.-+.-++++...++.|+.++....+. ++-+..+|.+-..
T Consensus 379 sv~LWKaA----VelE~~~darilL~rAvec--cp~---s~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~ 448 (913)
T KOG0495|consen 379 SVRLWKAA----VELEEPEDARILLERAVEC--CPQ---SMDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAK 448 (913)
T ss_pred hHHHHHHH----HhccChHHHHHHHHHHHHh--ccc---hHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHH
Confidence 55566544 3455667788888887764 222 234556778888888999998887664 5677788877776
Q ss_pred HHHhCCCHHHHHHHHhcCC----C----CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC--CHhHHHHHHHHHHc
Q 004938 161 MYGACGKILDARLMFDKMS----Y----RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP--DEMVLSKILSACSR 230 (722)
Q Consensus 161 ~~~~~g~~~~A~~~f~~m~----~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~ 230 (722)
.=-..|+.+...++.++-. . -+...|-.=...+-..|..-.+..+.......|+.- -..||..-...|.+
T Consensus 449 LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k 528 (913)
T KOG0495|consen 449 LEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEK 528 (913)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHh
Confidence 6677888888888876542 1 123336666666777777777777777777666553 24588888888999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccC---CchHHHHHHHHHHhcCCHHHHHHHH
Q 004938 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK---NLVVSTAMVSGYSRAGQVEDARLIF 307 (722)
Q Consensus 231 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f 307 (722)
.+.++-++.+|...++- ++.+..+|...+..--..|..+.-..+|++.... ....|-....-+-..|++..|+.++
T Consensus 529 ~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il 607 (913)
T KOG0495|consen 529 RPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVIL 607 (913)
T ss_pred cchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHH
Confidence 99999999999998886 4667788888888778889999999999888543 5567888888888899999999998
Q ss_pred hccCCC---CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCC
Q 004938 308 DQMVEK---DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384 (722)
Q Consensus 308 ~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~ 384 (722)
.+..+. +...|-+-+.....+.+++.|..+|.+.... .|+...|.--+..---++..++|.++++..++. ++.-
T Consensus 608 ~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f 684 (913)
T KOG0495|consen 608 DQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDF 684 (913)
T ss_pred HHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCch
Confidence 887544 4567888888888999999999999998764 567776766666666688999999999988886 4555
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004938 385 LRVNNAIIDMYAKCGSLESAREVFERMRR--R-NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYAC 461 (722)
Q Consensus 385 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 461 (722)
...|-.+...+-+.++++.|.+.|..-.+ | .+..|-.+...--+.|+.-.|..+|++..-.+ +-|...|...+..=
T Consensus 685 ~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~E 763 (913)
T KOG0495|consen 685 HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRME 763 (913)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHH
Confidence 77888888999999999999999987664 4 45678888888888899999999999987752 33566889999999
Q ss_pred HhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004938 462 SHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFA 541 (722)
Q Consensus 462 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 541 (722)
.+.|+.++|..+..++.+ ..+.+...|..-|.+..+.++-..+.+.+++.. .|+.+.-++...+....++++|.+.
T Consensus 764 lR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~W 839 (913)
T KOG0495|consen 764 LRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREW 839 (913)
T ss_pred HHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988 577788899999999999888888888888764 4556666677778888899999999
Q ss_pred HHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCCccCCcccEEEeCCEE
Q 004938 542 AKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEV 599 (722)
Q Consensus 542 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~ 599 (722)
|++++..+|++..++..+-..+...|.-++-.++++..... .|..|..|+.+...+
T Consensus 840 f~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avSK~i 895 (913)
T KOG0495|consen 840 FERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVSKDI 895 (913)
T ss_pred HHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHhhhH
Confidence 99999999999999999999999999999999999887664 355677776655443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-13 Score=132.50 Aligned_cols=420 Identities=15% Similarity=0.184 Sum_probs=279.9
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHh--cCChHHH-HHHHHHHHHhCCCCchhhHHHH
Q 004938 82 SRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR--AEGLLEG-MQVHGLGTKLGFGSDPFVQTGL 158 (722)
Q Consensus 82 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~~~~~a-~~~~~~~~~~g~~~~~~~~~~l 158 (722)
+.+=|.|+.. ..+|...++.-+|++|+..|+..+...-..++...+- ..++.-+ .+.|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 3455666654 4577888999999999999887776655555544332 2222222 22333333433 2222222
Q ss_pred HHHHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHH
Q 004938 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGE 238 (722)
Q Consensus 159 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 238 (722)
+.|.+.+ ++-+...+...+|..||.|+|+--..+.|.+++++-.....+.+..+||.+|.+..-. .++
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGK 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccH
Confidence 4465544 4445555677899999999999999999999999999988999999999999886533 348
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhcc----CCCC
Q 004938 239 AVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM----VEKD 314 (722)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~----~~~~ 314 (722)
.+..+|+...+.||..|+|+++....+.|+++.|++.+- +++.+| .+|.
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aal---------------------------qil~EmKeiGVePs 311 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAAL---------------------------QILGEMKEIGVEPS 311 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHH---------------------------HHHHHHHHhCCCcc
Confidence 899999999999999999999999999999999887743 234444 4566
Q ss_pred cchHHHHHHHHHhcCCchH-HHHHHHHHHh----CCCCC----ChhhHHHHHHHHHccCCchHHHHHHHHHHHcC----C
Q 004938 315 LICWSAMISGYAENNHPQE-ALKLFNEMQV----CGMKP----DKVTMLSVISACAHLGVLDQAQRIHLYIDKNA----F 381 (722)
Q Consensus 315 ~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~g~~p----~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~----~ 381 (722)
..+|..+|..+++.++..+ |..++.+.+. ..++| |...|...+..|.+..+.+.|.+++....... +
T Consensus 312 LsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~i 391 (625)
T KOG4422|consen 312 LSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFI 391 (625)
T ss_pred hhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhc
Confidence 7788888888888777644 4555555443 22333 45668888999999999999999988765421 2
Q ss_pred CCC---hhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004938 382 GGD---LRVNNAIIDMYAKCGSLESAREVFERMRR----RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454 (722)
Q Consensus 382 ~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 454 (722)
.|+ ..-|..+....+....++.-...|+.|.. |+..+...++.+....|.++-.-++|..++..|..-+...-
T Consensus 392 g~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~ 471 (625)
T KOG4422|consen 392 GPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR 471 (625)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH
Confidence 222 23455777888888889999999998874 67777777788888888888888888888777654444443
Q ss_pred HHHHHHHHhcC-C--------HHH-----HHHHH-------HHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 004938 455 IGVLYACSHAG-L--------VDE-----GREIF-------ASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513 (722)
Q Consensus 455 ~~ll~a~~~~g-~--------~~~-----a~~~~-------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 513 (722)
..++..+++.. . +.. |..++ .++. .........++..-++.|.|+.++|.+++.-.
T Consensus 472 eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~ 548 (625)
T KOG4422|consen 472 EEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLF 548 (625)
T ss_pred HHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHH
Confidence 33333333322 0 000 00111 1111 12233345667777777888888877776544
Q ss_pred -------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004938 514 -------PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548 (722)
Q Consensus 514 -------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 548 (722)
+..|......-|+.+-.+.++.-.|..+++-+.+.
T Consensus 549 ~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 549 LRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred HhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 33344334445556666666677777776666544
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-14 Score=141.95 Aligned_cols=444 Identities=13% Similarity=0.106 Sum_probs=305.0
Q ss_pred cHHHHH---HHHHhcCChHHHHHHHHHHHHhCCCCchhhH-HHHHHHHHhCCCHHHHHHHHhcCCC--C--C----cccH
Q 004938 119 SFPPIL---KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQ-TGLVGMYGACGKILDARLMFDKMSY--R--D----IVPW 186 (722)
Q Consensus 119 ~~~~ll---~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~f~~m~~--~--~----~~~~ 186 (722)
||+.+. .-|.......+|+..++-+++...-|+.... ..+.+.|.+...+..|++.+..... | + +...
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 555544 3344455667888888888887666655432 2344667788889999988754331 1 1 1124
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhH--------HHH
Q 004938 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL--------QST 258 (722)
Q Consensus 187 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~--------~~~ 258 (722)
|.+.-.+.+.|.+++|+..|+...+. .||..+-..|+-.+...|+.++.++.|..++.....+|..- -..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 44555678899999999999988765 68887766666667778999999999999886533322211 112
Q ss_pred HHHHHHhc---------C--ChHHHHHHHHhccc----CCch---HH----------H--------HHHHHHHhcCCHHH
Q 004938 259 LITMYANC---------G--CMDMAKGLFDKVLL----KNLV---VS----------T--------AMVSGYSRAGQVED 302 (722)
Q Consensus 259 li~~~~~~---------g--~~~~A~~~~~~~~~----~~~~---~~----------~--------~li~~~~~~g~~~~ 302 (722)
|++--.+. . +.+++.-.--++.. ++-. -| . .-..-|.++|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 22222221 1 12222222222222 2211 01 0 11223689999999
Q ss_pred HHHHHhccCCCCcchH----HHHH-HHHHhcC-CchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHH
Q 004938 303 ARLIFDQMVEKDLICW----SAMI-SGYAENN-HPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376 (722)
Q Consensus 303 A~~~f~~~~~~~~~~~----~~li-~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~ 376 (722)
|.+++.-...+|..+- |.|- --|.+-| ++..|...-+..+... +-+....+.--+.....|++++|...+.+.
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 9999888877654332 2222 2233333 4666666655554321 122222222223334578999999999999
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004938 377 DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR---RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT 453 (722)
Q Consensus 377 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 453 (722)
+...-......|| +.-.+-+.|++++|++.|-++. ..+....-.+.+.|-...++..|++++.+.... ++.|...
T Consensus 517 l~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~i 594 (840)
T KOG2003|consen 517 LNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAI 594 (840)
T ss_pred HcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHH
Confidence 8865444444444 3345778999999999998775 367778888888999999999999999887663 3445667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-H
Q 004938 454 FIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPNVVIWGSLMAACR-V 531 (722)
Q Consensus 454 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~-~ 531 (722)
..-|...|-+.|+-.+|.+.+-.--+ -+|.+.++..-|..-|....-+++|+.+|++. -++|+..-|..++..|. +
T Consensus 595 lskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHh
Confidence 88888999999999999998876544 46678899999999999999999999999998 57899999999998875 6
Q ss_pred cCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCc
Q 004938 532 HGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRW 569 (722)
Q Consensus 532 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 569 (722)
.|++++|..+|+......|++......|..++...|..
T Consensus 673 sgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred cccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 89999999999999999999999999999998888753
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-12 Score=126.43 Aligned_cols=364 Identities=14% Similarity=0.128 Sum_probs=218.6
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHH
Q 004938 81 PSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160 (722)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 160 (722)
...++..||.++++--..+.|.++|++-.....+.+..+||.+|.+-+ +..++++..+|+.....||.+++|+++.
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 334566666666666666666666666665555556666666655433 2223556666666666666666666666
Q ss_pred HHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHH-HHH
Q 004938 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSY-GEA 239 (722)
Q Consensus 161 ~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~-a~~ 239 (722)
..++.|+++.|++ .|++++.+|++-|+.|...+|..+|..+++.++..+ +..
T Consensus 282 c~akfg~F~~ar~---------------------------aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~ 334 (625)
T KOG4422|consen 282 CAAKFGKFEDARK---------------------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS 334 (625)
T ss_pred HHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence 6666666665553 346788899999999999999999999988888754 344
Q ss_pred HHHHHHH----cCCC----CCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccC
Q 004938 240 VHEFIID----NNVA----LDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311 (722)
Q Consensus 240 ~~~~~~~----~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 311 (722)
+..++.. ..+. .|...+..-++.|....+.+-|.++-.-.. .|+- +..|.
T Consensus 335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~----------------tg~N------~~~ig 392 (625)
T KOG4422|consen 335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLK----------------TGDN------WKFIG 392 (625)
T ss_pred HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHH----------------cCCc------hhhcC
Confidence 4444332 2222 245556666777777778777777732221 1110 11111
Q ss_pred C--CCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHH
Q 004938 312 E--KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN 389 (722)
Q Consensus 312 ~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~ 389 (722)
. ....-|..+....++....+.-+.+|+.|.-.-+-|+..+...++++....+.++...+++..++..|..-......
T Consensus 393 ~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~e 472 (625)
T KOG4422|consen 393 PDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLRE 472 (625)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHH
Confidence 1 01234556677778888888888999999887788888999999999888899998888888888776443333322
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChH---HHHHHHHHHHHcCCHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004938 390 AIIDMYAKCGSLESAREVFERMRRRNVI---SWTSMINAFAIHGDARNA-LIFFNKMKDESIDPNGVTFIGVLYACSHAG 465 (722)
Q Consensus 390 ~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A-~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 465 (722)
-++..+++.. ..|+.. -+.....-++ -++.++ ...-.+|.+..+.| ...+.++..+.+.|
T Consensus 473 eil~~L~~~k------------~hp~tp~r~Ql~~~~ak~a--ad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G 536 (625)
T KOG4422|consen 473 EILMLLARDK------------LHPLTPEREQLQVAFAKCA--ADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAG 536 (625)
T ss_pred HHHHHHhcCC------------CCCCChHHHHHHHHHHHHH--HHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcc
Confidence 2222222211 012211 1111111111 011111 22223455543444 34555556678899
Q ss_pred CHHHHHHHHHHhHhhcCCCCCcchHHHHH---HHHHhcCCHHHHHHHHHhC
Q 004938 466 LVDEGREIFASMTNEYNIPPKYEHYGCMV---DLFGRANLLREALELVETM 513 (722)
Q Consensus 466 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~~ 513 (722)
..++|.++|..+.+.+.-.|.....++|+ +.-.+......|...++-|
T Consensus 537 ~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 537 RTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred hHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999998866555555555566444 4444566666666666655
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-10 Score=117.61 Aligned_cols=492 Identities=14% Similarity=0.092 Sum_probs=382.4
Q ss_pred CCchhHHHHHHHhccCCCCCCCChHHHHHHhccCCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccH
Q 004938 44 SQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPA--P-PSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSF 120 (722)
Q Consensus 44 ~~~~~~~~~li~~~~~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 120 (722)
+.++.+|-..+.. -..++|+-++....+ | +.. |.-+|++-.-++.|..+++..++. ++-+...|
T Consensus 377 P~sv~LWKaAVel--------E~~~darilL~rAveccp~s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IW 443 (913)
T KOG0495|consen 377 PRSVRLWKAAVEL--------EEPEDARILLERAVECCPQSMD----LWLALARLETYENAKKVLNKAREI-IPTDREIW 443 (913)
T ss_pred CchHHHHHHHHhc--------cChHHHHHHHHHHHHhccchHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHH
Confidence 5677788877773 455668877765422 2 233 444566777788999999999876 66688888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH----HHhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCC-----C-CcccHHHHH
Q 004938 121 PPILKAIARAEGLLEGMQVHGLG----TKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY-----R-DIVPWSVMI 190 (722)
Q Consensus 121 ~~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~-~~~~~~~li 190 (722)
.+..+.=-+.|+.+...++.+.- ...|+..+..-|-.=...+-+.|..-.+..+...... - --.+|+.-.
T Consensus 444 itaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da 523 (913)
T KOG0495|consen 444 ITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDA 523 (913)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhH
Confidence 88777777788888887777654 3457777777777777777777777777766655432 1 234699999
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChH
Q 004938 191 DGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMD 270 (722)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 270 (722)
..|.+.+.++-|..+|....+. .+-+...|......--..|..+.-..++..++..- +-....|-....-+-..|++.
T Consensus 524 ~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~ 601 (913)
T KOG0495|consen 524 QSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVP 601 (913)
T ss_pred HHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcH
Confidence 9999999999999999998875 34455667766666667789999999999998873 345666777777888899999
Q ss_pred HHHHHHHhcccC---CchHHHHHHHHHHhcCCHHHHHHHHhccCC--CCcchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 004938 271 MAKGLFDKVLLK---NLVVSTAMVSGYSRAGQVEDARLIFDQMVE--KDLICWSAMISGYAENNHPQEALKLFNEMQVCG 345 (722)
Q Consensus 271 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 345 (722)
.|+.++....+. +...|-+-+.....+..++.|..+|.+... +....|.--+...--.++.++|++++++.++.
T Consensus 602 ~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~- 680 (913)
T KOG0495|consen 602 AARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS- 680 (913)
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-
Confidence 999999888543 567899999999999999999999988744 35667877777777889999999999998875
Q ss_pred CCCChh-hHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHH
Q 004938 346 MKPDKV-TMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTS 421 (722)
Q Consensus 346 ~~p~~~-t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 421 (722)
-|+.. .|..+...+-+.++++.|+..|..-.+. ++..+..|-.|...--+.|.+-.|+.++++..- .|...|-.
T Consensus 681 -fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle 758 (913)
T KOG0495|consen 681 -FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLE 758 (913)
T ss_pred -CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHH
Confidence 56654 4566667888899999999988776664 466678899999999999999999999998764 46789999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcC
Q 004938 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRAN 501 (722)
Q Consensus 422 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 501 (722)
.|..-.+.|+.+.|..+..+.++. ++-+...|..-|...-+.+.-......+. ...-|..+.-.+..++-...
T Consensus 759 ~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALk------kce~dphVllaia~lfw~e~ 831 (913)
T KOG0495|consen 759 SIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALK------KCEHDPHVLLAIAKLFWSEK 831 (913)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHH------hccCCchhHHHHHHHHHHHH
Confidence 999999999999999999988875 34445567666666666666444443333 34556777888889999999
Q ss_pred CHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHH
Q 004938 502 LLREALELVETM-PFAPNV-VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLS 560 (722)
Q Consensus 502 ~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 560 (722)
++++|.+-|.+. ...||. .+|.-+..-+.++|.-+.-.+++.+...-+|.+...+..++
T Consensus 832 k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 832 KIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHh
Confidence 999999999988 667764 78988999999999999999999999999999877666554
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-11 Score=120.23 Aligned_cols=432 Identities=13% Similarity=0.156 Sum_probs=297.5
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 004938 153 FVQTGLVGMYGACGKILDARLMFDKMSY---RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACS 229 (722)
Q Consensus 153 ~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 229 (722)
..|-....-=...+++..|+.+|++... +++..|---+..=.++..+..|..+++.....=...|..=| --+..=-
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE 152 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEE 152 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHH
Confidence 3343333333456778889999998764 45666888888888899999999999988764222333222 2222334
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhc--ccCCchHHHHHHHHHHhcCCHHHHHHHH
Q 004938 230 RAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV--LLKNLVVSTAMVSGYSRAGQVEDARLIF 307 (722)
Q Consensus 230 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~f 307 (722)
..|++..|.++|+.-.+ ..|+...|++.|+.=.+...++.|+.++++. ..|++.+|--....-.+.|++..|..+|
T Consensus 153 ~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 56888888888888876 4788888888888888888888888888775 3556666666666556666666666665
Q ss_pred hccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCC--h
Q 004938 308 DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD--L 385 (722)
Q Consensus 308 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~--~ 385 (722)
+...+. + |+-.+ +...|.+...-=.+...++.|.-++..+++. ++.+ .
T Consensus 231 erAie~-----------~---~~d~~---------------~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~rae 280 (677)
T KOG1915|consen 231 ERAIEF-----------L---GDDEE---------------AEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAE 280 (677)
T ss_pred HHHHHH-----------h---hhHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHH
Confidence 543221 0 00000 0111222222222344566666677666654 2222 3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHH--------HHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--
Q 004938 386 RVNNAIIDMYAKCGSLESAREV--------FERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV-- 452 (722)
Q Consensus 386 ~~~~~li~~~~~~g~~~~A~~~--------~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-- 452 (722)
..|..+...--+-|+.....++ ++.+.+ -|-.+|--.+..-...|+.+...++|++.+.. ++|-..
T Consensus 281 eL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr 359 (677)
T KOG1915|consen 281 ELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKR 359 (677)
T ss_pred HHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHH
Confidence 4444444444444554333322 223333 35578888888888889999999999999885 566331
Q ss_pred -----HHHHHHHHH---HhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHH----hcCCHHHHHHHHHhC-CCCCCH
Q 004938 453 -----TFIGVLYAC---SHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFG----RANLLREALELVETM-PFAPNV 519 (722)
Q Consensus 453 -----t~~~ll~a~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~-~~~p~~ 519 (722)
.|.-+=.+| ....+++.+.++|+...+ -+|-...++..+--+|+ |+.++..|.+++... |..|..
T Consensus 360 ~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~ 437 (677)
T KOG1915|consen 360 YWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD 437 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch
Confidence 233232333 246889999999999987 67777788887777765 789999999999877 889999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCCccCCcccEEEeCCEE
Q 004938 520 VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEV 599 (722)
Q Consensus 520 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~ 599 (722)
.++...+..-.+.++++....+|++.++.+|.+..++...+.+-...|+++.|..+|....++...-.|..-| ...
T Consensus 438 KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw----kaY 513 (677)
T KOG1915|consen 438 KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW----KAY 513 (677)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH----HHh
Confidence 9999999999999999999999999999999999999999999999999999999999999887765565544 234
Q ss_pred EEEEeCCCCCcchHHHHHHHHHHHH
Q 004938 600 YEFLTADRSHKQTDQIYEKLNEVIS 624 (722)
Q Consensus 600 ~~f~~~~~~~~~~~~i~~~l~~l~~ 624 (722)
..|......+..++.+|+.|.+...
T Consensus 514 IdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 514 IDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred hhhhhhcchHHHHHHHHHHHHHhcc
Confidence 4566666667777888877765443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.3e-15 Score=148.78 Aligned_cols=257 Identities=16% Similarity=0.133 Sum_probs=112.4
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHH-HHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 004938 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS-VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399 (722)
Q Consensus 321 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g 399 (722)
+...+.+.|++++|++++++......+|+...|-. +...+...++.+.|.+.++.+.+.+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 45667788888889888866554432455444444 344555678888999988888876532 56667777777 6889
Q ss_pred CHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004938 400 SLESAREVFERMRR--RNVISWTSMINAFAIHGDARNALIFFNKMKDES-IDPNGVTFIGVLYACSHAGLVDEGREIFAS 476 (722)
Q Consensus 400 ~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 476 (722)
++++|.+++...-+ ++...+..++..+...++++++..+++++.... .+++...|..+...+.+.|+.++|.+.++.
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999988877643 566778888888999999999999999977532 344566778888889999999999999999
Q ss_pred hHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCc
Q 004938 477 MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM--PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554 (722)
Q Consensus 477 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 554 (722)
..+ ..|.+......++..+...|+.+++.++++.. ..+.|...|..+..++...|+.++|...++++.+.+|+|+.
T Consensus 172 al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 172 ALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 987 34456788889999999999999988888776 12345668889999999999999999999999999999999
Q ss_pred hHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 555 ALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 555 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
....+++++...|+.++|.+++++..+
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999887643
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.7e-10 Score=120.64 Aligned_cols=549 Identities=11% Similarity=0.055 Sum_probs=321.6
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCchhHHHHHHHhccCCCCCCCChHHHHHHhc---cCCCCCcchHHHHHHHHHhCCCch
Q 004938 23 SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFS---QIPAPPSRVSNKFIRAISWSHRPK 99 (722)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~g~~~~A~~~f~---~~~~~~~~~~~~li~~~~~~g~~~ 99 (722)
+++..+..+.-.+++..+ ..+..|..|-..|-. . |+.+.+...+- .+.+.|..-|-.+-.-..+.|.++
T Consensus 153 g~~eeA~~i~~EvIkqdp----~~~~ay~tL~~IyEq--r--Gd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDP----RNPIAYYTLGEIYEQ--R--GDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred CCHHHHHHHHHHHHHhCc----cchhhHHHHHHHHHH--c--ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence 667777777777777663 566777777777766 5 77777776552 344556667777777777788888
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHH----HHHHHHhCCCHHHHHHHH
Q 004938 100 HALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTG----LVGMYGACGKILDARLMF 175 (722)
Q Consensus 100 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----li~~~~~~g~~~~A~~~f 175 (722)
+|.-.|.+.++..+. +...+---...|-+.|+...|..-+.++.....+.|..-.-. .+..|...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 888888887765322 322222334556677888888888877777643223222222 244455566667777777
Q ss_pred hcCCC--C---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHH--------------------------HHH
Q 004938 176 DKMSY--R---DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVL--------------------------SKI 224 (722)
Q Consensus 176 ~~m~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--------------------------~~l 224 (722)
+.... . +...+|.++..|.+...++.|......+......+|..-+ .-+
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl 383 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRL 383 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhH
Confidence 76653 2 3334888888888888888888888887662222222111 112
Q ss_pred HHHHHccCChHHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccC----CchHHHHHHHHHHhcC
Q 004938 225 LSACSRAGNLSYGEAVHEFIIDNN--VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK----NLVVSTAMVSGYSRAG 298 (722)
Q Consensus 225 l~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g 298 (722)
.-+.......+....+...+.+.. +..++..|.-+.++|...|.+.+|.++|..+... +...|-.+..+|...|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 223344455555666666666665 3445678888999999999999999999888654 5678999999999999
Q ss_pred CHHHHHHHHhccCCCCc---chHHHHHHHHHhcCCchHHHHHHHHHHh--------CCCCCChhhHHHHHHHHHccCCch
Q 004938 299 QVEDARLIFDQMVEKDL---ICWSAMISGYAENNHPQEALKLFNEMQV--------CGMKPDKVTMLSVISACAHLGVLD 367 (722)
Q Consensus 299 ~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~t~~~ll~~~~~~g~~~ 367 (722)
..++|...|+.+...++ ..--.|-..+.+.|+.++|++.+..+.. .+..|+..........+.+.|+.+
T Consensus 464 e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E 543 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE 543 (895)
T ss_pred hHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence 99999999998865533 3444556678889999999999988642 223344444444445555666655
Q ss_pred HHHHHHHHHHHcC----------------------CCCChh---------------------------------------
Q 004938 368 QAQRIHLYIDKNA----------------------FGGDLR--------------------------------------- 386 (722)
Q Consensus 368 ~a~~i~~~~~~~~----------------------~~~~~~--------------------------------------- 386 (722)
+-..+-..++... ......
T Consensus 544 ~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsid 623 (895)
T KOG2076|consen 544 EFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSID 623 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHH
Confidence 5433322222100 000011
Q ss_pred ----HHHHHHHHHHhcCCHHHHHHHHHhcCCC-----Ch----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CC--CCC
Q 004938 387 ----VNNAIIDMYAKCGSLESAREVFERMRRR-----NV----ISWTSMINAFAIHGDARNALIFFNKMKDE-SI--DPN 450 (722)
Q Consensus 387 ----~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~--~p~ 450 (722)
.+.-++..+++.++.++|..+...+.+- +. ..-..++.+....+++..|...++.|... +. .|.
T Consensus 624 dwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~ 703 (895)
T KOG2076|consen 624 DWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVY 703 (895)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhH
Confidence 1223344455555555555555544431 11 11223334444555555555555555442 11 122
Q ss_pred HH-HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCc--chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 004938 451 GV-TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY--EHYGCMVDLFGRANLLREALELVETM-PFAPNVVIWGSLM 526 (722)
Q Consensus 451 ~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll 526 (722)
.. .|+..++.....|+-.--.+++..+.. .+|+- ..+......+..++.+..|+..+-+. ...||....+.++
T Consensus 704 q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~---~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~l 780 (895)
T KOG2076|consen 704 QLNLWNLDFSYFSKYGQRVCYLRLIMRLLV---KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCL 780 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 11 223233333333332222222222211 11111 11112222334566777777766554 3345533333332
Q ss_pred HH-H----------HHcCCHHHHHHHHHHHHccCCC--CCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 527 AA-C----------RVHGEIELAEFAAKQLLQLDPD--HDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 527 ~~-~----------~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
+. + .+|-.+-++...+++..++.-. ...++++++.+|-..|-..-|..++++..+..
T Consensus 781 glafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 781 GLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS 850 (895)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC
Confidence 22 1 1233456677777777666533 45688999999999999999999999987754
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.7e-12 Score=133.14 Aligned_cols=361 Identities=15% Similarity=0.136 Sum_probs=218.9
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhc---ccCCchHHHHHHHHHH
Q 004938 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV---LLKNLVVSTAMVSGYS 295 (722)
Q Consensus 219 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~ 295 (722)
.......+.....|+++.|..++.++++.. +.+...|..|...|-..|+.+++...+-.. ...|...|..+.....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 333333444444488888888888888774 346667777888888888888877765333 3335566777777777
Q ss_pred hcCCHHHHHHHHhccCCCCcchHHH---HHHHHHhcCCchHHHHHHHHHHhCCCCCChh----hHHHHHHHHHccCCchH
Q 004938 296 RAGQVEDARLIFDQMVEKDLICWSA---MISGYAENNHPQEALKLFNEMQVCGMKPDKV----TMLSVISACAHLGVLDQ 368 (722)
Q Consensus 296 ~~g~~~~A~~~f~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~ 368 (722)
+.|++++|.-.|.+..+.++.-|-. -+..|-+.|+...|++-|.++.+...+.|.. +.-.++..+...++-+.
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 7777777777777765544333332 3455666777777777777776643211111 22223334444444455
Q ss_pred HHHHHHHHHH-cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004938 369 AQRIHLYIDK-NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR----RNVISWTSMINAFAIHGDARNALIFFNKMK 443 (722)
Q Consensus 369 a~~i~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 443 (722)
|.+.+..... .+-..+...++.++..|.+...++.|......+.. +|..-|.+-= .++. -+.-..
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~-----~~~~-----~~~~~~ 368 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE-----RRRE-----EPNALC 368 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh-----hccc-----cccccc
Confidence 5555554443 12233344455555556655555555555444332 2221111000 0000 000000
Q ss_pred --HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHhC---CCC
Q 004938 444 --DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNI--PPKYEHYGCMVDLFGRANLLREALELVETM---PFA 516 (722)
Q Consensus 444 --~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~ 516 (722)
..++.++... ..+.-++.+....+....+...... ..+ ..+...|.-+.++|...|++.+|++++..+ +..
T Consensus 369 ~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~-~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~ 446 (895)
T KOG2076|consen 369 EVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVE-DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY 446 (895)
T ss_pred cCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHH-hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc
Confidence 0112333322 1222233444444333333333333 343 335788999999999999999999999998 223
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCCccCCcccE
Q 004938 517 PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSR 592 (722)
Q Consensus 517 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 592 (722)
.+...|--+...+...|.+++|.+.|++++.+.|++..+-..|+.+|...|+.++|.+++..+..-+-+..+++.|
T Consensus 447 ~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 447 QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 3577999999999999999999999999999999999999999999999999999999999876433333345554
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.6e-10 Score=111.02 Aligned_cols=491 Identities=13% Similarity=0.081 Sum_probs=339.7
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHH
Q 004938 82 SRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGM 161 (722)
Q Consensus 82 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 161 (722)
...|-.-...=-.++++..|.++|++.+..... +...|.--+.+=.+...+..|+.+++.++..-.. -...|-..+.+
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyKY~ym 150 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHHHHHH
Confidence 334544444445567788888999988875422 4445555566666788888999999988876322 23345555556
Q ss_pred HHhCCCHHHHHHHHhcCC--CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHH
Q 004938 162 YGACGKILDARLMFDKMS--YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239 (722)
Q Consensus 162 ~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 239 (722)
=-..|++..|+++|++.. +|+...|++.|..=.+....+.|..+|+...- +.|+..+|..-...=-+.|+...+..
T Consensus 151 EE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHH
Confidence 667789999999998765 58888999999999999999999999998875 46888888888887788899999999
Q ss_pred HHHHHHHc-CC-CCCHhHHHHHHHHHHhcCChHHHHHHHHhccc----C-CchHHHHHHHHHHhcCCHHHHHHH------
Q 004938 240 VHEFIIDN-NV-ALDAHLQSTLITMYANCGCMDMAKGLFDKVLL----K-NLVVSTAMVSGYSRAGQVEDARLI------ 306 (722)
Q Consensus 240 ~~~~~~~~-g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~g~~~~A~~~------ 306 (722)
+++.+++. |- ..+...+.+....=.++..++.|.-+|.-.+. . ....|..+..---+-|+.....+.
T Consensus 229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 99888774 11 11234555666666677788888888765532 2 133444444443444544333322
Q ss_pred --HhccCCC---CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCCh-------hhHHHHHHHH---HccCCchHHHH
Q 004938 307 --FDQMVEK---DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK-------VTMLSVISAC---AHLGVLDQAQR 371 (722)
Q Consensus 307 --f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~---~~~g~~~~a~~ 371 (722)
++.+... |-.+|--.+..--..|+.+...++|++.... ++|-. ..|.-+=-+| ....+++.+++
T Consensus 309 ~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 309 FQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred hHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3333333 4467777777777889999999999999865 56632 1222222222 35678999999
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHH----HhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004938 372 IHLYIDKNAFGGDLRVNNAIIDMY----AKCGSLESAREVFERMRR--RNVISWTSMINAFAIHGDARNALIFFNKMKDE 445 (722)
Q Consensus 372 i~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 445 (722)
+++..++. ++-...++..+=-+| .++.++..|.+++..... |-..++...|..-.+.++++....+|++.++-
T Consensus 388 vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 388 VYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 99999884 455556665554444 468899999999987764 67778888888888999999999999999984
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHH
Q 004938 446 SIDP-NGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPNVVIWG 523 (722)
Q Consensus 446 g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 523 (722)
.| |..+|......=...|+.+.|..+|..++....+......|.+.|+.=...|.++.|..++++. ...+-..+|-
T Consensus 467 --~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWi 544 (677)
T KOG1915|consen 467 --SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWI 544 (677)
T ss_pred --ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHH
Confidence 45 4567777777777889999999999998875333333456677777778899999999999988 4445556787
Q ss_pred HHHHHHH-----HcC-----------CHHHHHHHHHHHHcc----CCCCCc--hHHHHHHHhhhCCCcchHHHHHHHHH
Q 004938 524 SLMAACR-----VHG-----------EIELAEFAAKQLLQL----DPDHDG--ALVLLSNIYAKDKRWQDVGELRKSMK 580 (722)
Q Consensus 524 ~ll~~~~-----~~g-----------~~~~a~~~~~~~~~~----~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~ 580 (722)
++..--. +.+ ++..|..+|+++... +|.... .+....+.-...|...+...+-+.|-
T Consensus 545 sFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 545 SFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred hHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 7655332 334 677888888888653 343221 12233444455677666666666664
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-11 Score=120.93 Aligned_cols=214 Identities=16% Similarity=0.137 Sum_probs=176.5
Q ss_pred ccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHH
Q 004938 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIF 438 (722)
Q Consensus 362 ~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 438 (722)
-.|+.-.+.+-++.+++.... +...|--+..+|....+.++-++.|+.... .|..+|..-...+.-.+++++|+.=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 457888888999998887533 333477777889999999999999998764 4667787777777788899999999
Q ss_pred HHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 004938 439 FNKMKDESIDPNG-VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFA 516 (722)
Q Consensus 439 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 516 (722)
|++.+. +.|+. ..|..+-.+..+.+.++++...|++.++ .+|.-++.|+.....+..++++++|.+.|+.. .++
T Consensus 417 F~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 999988 67765 4688888888899999999999999998 57777899999999999999999999999987 445
Q ss_pred CC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 517 PN---------VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 517 p~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
|+ +.+-..++-.- =.+++..|+.+++++++++|....+|..|+.+-.+.|+.++|.++|++-..
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 54 22222222222 238999999999999999999999999999999999999999999987643
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.3e-11 Score=119.20 Aligned_cols=425 Identities=13% Similarity=0.108 Sum_probs=285.8
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHhcCCCCCccc-----HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHH-
Q 004938 152 PFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP-----WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKIL- 225 (722)
Q Consensus 152 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll- 225 (722)
-.+...|..-|.......+|+..++-+.....++ --.+...+.+...+.+|++.|+.....-...+..+-..++
T Consensus 201 fsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ 280 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence 3444556677777788889998888776433222 1224456788899999999998777642222333333333
Q ss_pred ---HHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccC----------------CchH
Q 004938 226 ---SACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK----------------NLVV 286 (722)
Q Consensus 226 ---~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------------~~~~ 286 (722)
-.+.+.|.++.|..-|+...+. .|+..+.-.|+-.+..-|+-++..+.|.+|..- +...
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 3467889999999999999886 577777777777888889999999999998421 1111
Q ss_pred HH-----HHHHHHHhcCC--HHH----HHHHHhccCCCCcc---hHH----------H--------HHHHHHhcCCchHH
Q 004938 287 ST-----AMVSGYSRAGQ--VED----ARLIFDQMVEKDLI---CWS----------A--------MISGYAENNHPQEA 334 (722)
Q Consensus 287 ~~-----~li~~~~~~g~--~~~----A~~~f~~~~~~~~~---~~~----------~--------li~~~~~~g~~~~A 334 (722)
.+ -++.-.-+.++ -++ |.++..-+..++-. -|. . -...|.++|+++.|
T Consensus 359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 22 22222222222 111 12222222233211 011 0 12347899999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHH--HHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 004938 335 LKLFNEMQVCGMKPDKVTMLSV--ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR 412 (722)
Q Consensus 335 ~~~~~~m~~~g~~p~~~t~~~l--l~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 412 (722)
+++++-..+..-+.-+..-+.+ +.-.....++..|.+.-...+... .-+....+.-.+.-...|++++|.+.|.+..
T Consensus 439 ieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal 517 (840)
T KOG2003|consen 439 IEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEAL 517 (840)
T ss_pred HHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence 9999888765433222222222 222222346677777666554432 1122221111223345799999999999998
Q ss_pred CCChHHHHHHH---HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcch
Q 004938 413 RRNVISWTSMI---NAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489 (722)
Q Consensus 413 ~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 489 (722)
..|...-.+|. -.+-..|+.++|++.|-++..- +.-+......+.+.|....+..+|++++..... -+|.|+..
T Consensus 518 ~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~i 594 (840)
T KOG2003|consen 518 NNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAI 594 (840)
T ss_pred cCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHH
Confidence 87765544443 3467889999999999887663 344566778888899999999999999988775 67788999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCC
Q 004938 490 YGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDK 567 (722)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 567 (722)
.+.|.++|-+.|+-.+|....-.- ..-| +..+..-|...|....-.++++..|+++--+.|+.......++..+.+.|
T Consensus 595 lskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsg 674 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSG 674 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcc
Confidence 999999999999999999876444 3223 44454446666777777899999999999999998777778888889999
Q ss_pred CcchHHHHHHHHHhC
Q 004938 568 RWQDVGELRKSMKER 582 (722)
Q Consensus 568 ~~~~a~~~~~~m~~~ 582 (722)
++..|..+++....+
T Consensus 675 nyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 675 NYQKAFDLYKDIHRK 689 (840)
T ss_pred cHHHHHHHHHHHHHh
Confidence 999999999998764
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.7e-10 Score=120.91 Aligned_cols=85 Identities=15% Similarity=0.068 Sum_probs=72.3
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 004938 181 RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLI 260 (722)
Q Consensus 181 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 260 (722)
++..+|..++..-.-+|+.+.|..++.+|+++|++.+..-|..++-+ .++...++.++.-|...|+.|+..|+..-+
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 67788999999999999999999999999999999998888777755 788888999999999999999999887766
Q ss_pred HHHHhcCC
Q 004938 261 TMYANCGC 268 (722)
Q Consensus 261 ~~~~~~g~ 268 (722)
-.+.++|.
T Consensus 279 ip~l~N~~ 286 (1088)
T KOG4318|consen 279 IPQLSNGQ 286 (1088)
T ss_pred Hhhhcchh
Confidence 65555443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.9e-11 Score=117.73 Aligned_cols=329 Identities=15% Similarity=0.150 Sum_probs=246.2
Q ss_pred CCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchH-HHHHHHHH
Q 004938 248 NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW-SAMISGYA 326 (722)
Q Consensus 248 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~-~~li~~~~ 326 (722)
+...|...+-...-.+.+.|....|...|......-+..|.+.+....-..+.+.+..+-...+..+...- -.+..++.
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 34556665555566677788888898888888776666677666655555555555555444444321111 12345666
Q ss_pred hcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCC--CCChhHHHHHHHHHHhcCCHH-H
Q 004938 327 ENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAF--GGDLRVNNAIIDMYAKCGSLE-S 403 (722)
Q Consensus 327 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~-~ 403 (722)
...+.++++.-.......|.+-+...-+....+.-...++++|+.+|+.+.+... -.|..+|+.++-.-..+.++. -
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~L 318 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence 6678888998888888888655555444455555678899999999999998731 125667776663322222222 2
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcC
Q 004938 404 AREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG-VTFIGVLYACSHAGLVDEGREIFASMTNEYN 482 (722)
Q Consensus 404 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 482 (722)
|..+++ +.+--+.|.-.+.+-|.-.++.++|+..|++.++ +.|.. ..|+.+..-|....+...|.+-++.+++ -
T Consensus 319 A~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i 393 (559)
T KOG1155|consen 319 AQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--I 393 (559)
T ss_pred HHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--c
Confidence 333332 2233345666777888889999999999999988 56664 4677788899999999999999999987 5
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHH
Q 004938 483 IPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLS 560 (722)
Q Consensus 483 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 560 (722)
.|.|...|-.|..+|.-.+...-|+-+|++. ..+| |...|.+|...|.+.++.++|+..|++++..+.-+...++.|+
T Consensus 394 ~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~La 473 (559)
T KOG1155|consen 394 NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLA 473 (559)
T ss_pred CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHH
Confidence 5668899999999999999999999999998 6667 6789999999999999999999999999998877888999999
Q ss_pred HHhhhCCCcchHHHHHHHHHh
Q 004938 561 NIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 561 ~~~~~~g~~~~a~~~~~~m~~ 581 (722)
++|.+.++.++|...+++-.+
T Consensus 474 kLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 474 KLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999988766
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.7e-10 Score=112.56 Aligned_cols=355 Identities=10% Similarity=0.020 Sum_probs=208.9
Q ss_pred CCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHH--HHH
Q 004938 147 GFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVL--SKI 224 (722)
Q Consensus 147 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~l 224 (722)
+...|.+.+-...-.+-+.|....|+..|.+....-+.-|.+.+.-.--..+.+.+..+. . |...|..-+ --+
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~----~-~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILV----V-GLPSDMHWMKKFFL 233 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHH----h-cCcccchHHHHHHH
Confidence 334555554444455667788888998888776654555555443322222222222221 1 122221111 123
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCC------chHHHHHHHHHHhcC
Q 004938 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKN------LVVSTAMVSGYSRAG 298 (722)
Q Consensus 225 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g 298 (722)
..++-.....+++.+-.......|++.+...-+-...++-...++|+|+.+|+++.+.| ..+|..++-.-..+.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 44555556777888888888888988888888877788888889999999988886553 345554443322222
Q ss_pred CHH-HHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHH
Q 004938 299 QVE-DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377 (722)
Q Consensus 299 ~~~-~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~ 377 (722)
++. -|..++ .+.+--+.|...+.+-|.-.++.++|...|++.++.+ +-....|+.+..-|....+...|.+-++.++
T Consensus 314 kLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 314 KLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 211 122222 1122234455555666666777777777777776643 1233455555666677777777777777776
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004938 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454 (722)
Q Consensus 378 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 454 (722)
+-+ +.|-..|-.|.++|.-.+...-|.-.|++..+ .|...|.+|..+|.+.++.++|++.|.+....| ..+...+
T Consensus 392 di~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l 469 (559)
T KOG1155|consen 392 DIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSAL 469 (559)
T ss_pred hcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHH
Confidence 653 45666677777777777777777777766543 466677777777777777777777777766654 3355666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhc---CC-CC-CcchHHHHHHHHHhcCCHHHHHHHH
Q 004938 455 IGVLYACSHAGLVDEGREIFASMTNEY---NI-PP-KYEHYGCMVDLFGRANLLREALELV 510 (722)
Q Consensus 455 ~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~ 510 (722)
..|...+-+.++.++|.+.|+.-.+.. |. .| ......-|..-+.+.+++++|....
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYA 530 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 777777777777777777766655422 11 11 1122222344445555655555443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.2e-12 Score=131.11 Aligned_cols=278 Identities=13% Similarity=0.042 Sum_probs=213.2
Q ss_pred CCHHHHHHHHhccCCC--Cc-chHHHHHHHHHhcCCchHHHHHHHHHHhCC--CCCChhhHHHHHHHHHccCCchHHHHH
Q 004938 298 GQVEDARLIFDQMVEK--DL-ICWSAMISGYAENNHPQEALKLFNEMQVCG--MKPDKVTMLSVISACAHLGVLDQAQRI 372 (722)
Q Consensus 298 g~~~~A~~~f~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~~~a~~i 372 (722)
=+..+|...|..++.. |+ .....+..+|...+++++|.++|+...+.. ..-+...|.+++.-+-+ +.+...
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 3567788888886544 33 334556788999999999999999987642 11155677777765432 122222
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 004938 373 HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR---NVISWTSMINAFAIHGDARNALIFFNKMKDESIDP 449 (722)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 449 (722)
+.+-+-.--+..+.+|.++.++|.-+++.+.|.+.|++..+- ...+|+.+..-+.....+|.|...|+..+. +.|
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 222222223556889999999999999999999999998863 456788888888889999999999998876 456
Q ss_pred CHH-HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 004938 450 NGV-TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLM 526 (722)
Q Consensus 450 ~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 526 (722)
... .|..+...|.+.++++.|.-.|+.+.+ --|.+.....++...+-+.|+.++|+++++++ -.+| |+..--.-.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 543 678888899999999999999999875 23345677788888999999999999999998 4444 443333455
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 527 AACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 527 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
..+...+++++|+..++++.++-|++...+.+++.+|.+.|+.+.|..-|.-+.+..
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 567778899999999999999999999999999999999999999998888776643
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5e-10 Score=113.60 Aligned_cols=263 Identities=13% Similarity=0.019 Sum_probs=209.4
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHH
Q 004938 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIID 393 (722)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 393 (722)
++........-+...+++.+.+++++...+.. ++....+..-|.++...|+..+-..+=..+++. .|....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 44444555566778899999999999988763 556666666666778888877777766667665 4666788889998
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004938 394 MYAKCGSLESAREVFERMRRRN---VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470 (722)
Q Consensus 394 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 470 (722)
-|.-.|+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-....+.-+..-|.+.+..+-|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 8988999999999999876533 368999999999999999999999887663 122223344555568889999999
Q ss_pred HHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC--C------CCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 004938 471 REIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM--P------FAP-NVVIWGSLMAACRVHGEIELAEFA 541 (722)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~------~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 541 (722)
.++|..+.. -.|.|+..++-+.-+....+.+.+|...|+.. + ..+ -..+|+.|.-+|++.+.+++|+..
T Consensus 400 e~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 400 EKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 999998875 44556778888888888889999999998875 1 111 245688889999999999999999
Q ss_pred HHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 542 AKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 542 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
+++++.+.|++..++..++-+|...|+++.|...|.+..-
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999987654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-10 Score=122.47 Aligned_cols=245 Identities=10% Similarity=0.074 Sum_probs=124.2
Q ss_pred HhcCCchHHHHHHHHHHhCCCCCChhhHH--HHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 004938 326 AENNHPQEALKLFNEMQVCGMKPDKVTML--SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLES 403 (722)
Q Consensus 326 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 403 (722)
.+.|+++.|.+.|.++.+. .|+..... .....+...|+++.|...++.+.+.. +.+..+...+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 4455555555555555442 33332221 11334445555555555555555443 3344455555555555555555
Q ss_pred HHHHHHhcCCCC---h--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004938 404 AREVFERMRRRN---V--------ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGRE 472 (722)
Q Consensus 404 A~~~~~~~~~~~---~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 472 (722)
|.+++..+.+.. . ..|..++.......+.+...++++.+.+. .+.+......+..++...|+.++|..
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 555555554311 1 12222233233333444444555544332 23344455556666666666666666
Q ss_pred HHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004938 473 IFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDP 550 (722)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 550 (722)
+++...+ .+|+... .++......++.+++++.+++. ...|+ ...+..+...|...+++++|.+.|+++++.+|
T Consensus 285 ~L~~~l~---~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P 359 (398)
T PRK10747 285 IILDGLK---RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred HHHHHHh---cCCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 6665554 1233211 1122222346666666666655 33343 34555666666666677777777777776666
Q ss_pred CCCchHHHHHHHhhhCCCcchHHHHHHHHH
Q 004938 551 DHDGALVLLSNIYAKDKRWQDVGELRKSMK 580 (722)
Q Consensus 551 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 580 (722)
++ ..+..++.++.+.|+.++|.+++++-.
T Consensus 360 ~~-~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 360 DA-YDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 64 345566666667777777766666543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.8e-09 Score=106.71 Aligned_cols=496 Identities=13% Similarity=0.115 Sum_probs=290.1
Q ss_pred HHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC-CCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 004938 70 ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNE-GLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGF 148 (722)
Q Consensus 70 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 148 (722)
+......|| +.|-.-+..+.++|+.......|++.+.. -+......|...++-..+.+-++.+..++++.++.
T Consensus 94 ~lv~mHkmp----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~-- 167 (835)
T KOG2047|consen 94 CLVFMHKMP----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV-- 167 (835)
T ss_pred HHHHHhcCC----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--
Confidence 344444554 36777778888888888888888886643 33345567888888788888888888888888764
Q ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHhcCCCC----------CcccHHHHHHHHHhCCChh---HHHHHHHHHHHCCCC
Q 004938 149 GSDPFVQTGLVGMYGACGKILDARLMFDKMSYR----------DIVPWSVMIDGYFQNGLFD---EVLNLFEEMKMSNVE 215 (722)
Q Consensus 149 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~----------~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~ 215 (722)
++..-+-.|..+++.+++++|.+.+...... +-..|+.+-...+++-+.- ....+++.+.. .-
T Consensus 168 --~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~--rf 243 (835)
T KOG2047|consen 168 --APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR--RF 243 (835)
T ss_pred --CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc--cC
Confidence 3334677788888888888888888777533 2233666655555543332 23334444432 23
Q ss_pred CCH--hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCh----------------------HH
Q 004938 216 PDE--MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCM----------------------DM 271 (722)
Q Consensus 216 p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~----------------------~~ 271 (722)
+|. ..|++|..-|.+.|.++.|..++++.+.. ...+.-++.+.+.|+..... +-
T Consensus 244 tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~ 321 (835)
T KOG2047|consen 244 TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLEL 321 (835)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHH
Confidence 443 35677777788888888888888777664 22334444445555432211 11
Q ss_pred HHHHHHhcccC---------------CchHHHHHHHHHHhcCCHHHHHHHHhccCCC---------CcchHHHHHHHHHh
Q 004938 272 AKGLFDKVLLK---------------NLVVSTAMVSGYSRAGQVEDARLIFDQMVEK---------DLICWSAMISGYAE 327 (722)
Q Consensus 272 A~~~~~~~~~~---------------~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---------~~~~~~~li~~~~~ 327 (722)
...-|+.+..+ ++..|..-+. +..|+..+-...+.+.... -...|..+...|-.
T Consensus 322 ~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~ 399 (835)
T KOG2047|consen 322 HMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYEN 399 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHh
Confidence 22222222211 1122222111 2233444444444443211 12357777777888
Q ss_pred cCCchHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHccCCchHHHHHHHHHHHcC-----------CCC------ChhH
Q 004938 328 NNHPQEALKLFNEMQVCGMKPD---KVTMLSVISACAHLGVLDQAQRIHLYIDKNA-----------FGG------DLRV 387 (722)
Q Consensus 328 ~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~-----------~~~------~~~~ 387 (722)
+|+.+.|..+|++..+-..+-- ..+|..-...=.+..+++.|..+.+.+.... .++ +..+
T Consensus 400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlki 479 (835)
T KOG2047|consen 400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKI 479 (835)
T ss_pred cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHH
Confidence 8888888888877765432111 1122222222234556677777666554321 111 2335
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHH---HHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHH-
Q 004938 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMI---NAFAIHGDARNALIFFNKMKDESIDPNGV-TFIGVLYACS- 462 (722)
Q Consensus 388 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~- 462 (722)
|..+++..-..|-++....+|+++.+--+.|=..++ .-+-.+.-++++.+.|++-+..=-.|+.. .|+..+.-+.
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ 559 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIK 559 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHH
Confidence 556667677778888888888887752222212222 12334556788888887766542234442 4555554333
Q ss_pred --hcCCHHHHHHHHHHhHhhcCCCCCcc--hHHHHHHHHHhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHHcCC
Q 004938 463 --HAGLVDEGREIFASMTNEYNIPPKYE--HYGCMVDLFGRANLLREALELVETM--PFAPN--VVIWGSLMAACRVHGE 534 (722)
Q Consensus 463 --~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~ll~~~~~~g~ 534 (722)
..-.++.|..+|+...+ +.||... .|-.....=.+-|....|++++++. +.++. ...|+..+.--...=-
T Consensus 560 rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yG 637 (835)
T KOG2047|consen 560 RYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYG 637 (835)
T ss_pred HhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhC
Confidence 23468889999999887 7776532 2222223334568888899999888 34443 2567777664443333
Q ss_pred HHHHHHHHHHHHccCCCCCch--HHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 535 IELAEFAAKQLLQLDPDHDGA--LVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 535 ~~~a~~~~~~~~~~~p~~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
+.....+|+++++.-|++..- ....+++-.+.|..+.|..++..--+
T Consensus 638 v~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 638 VPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred CcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 556678888888887775433 33557777888999999888876544
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-10 Score=121.98 Aligned_cols=202 Identities=10% Similarity=0.010 Sum_probs=133.7
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHH
Q 004938 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIID 393 (722)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 393 (722)
+......+...|.+.|++++|++++..+.+.+..++. .+..+-. ..|..++.
T Consensus 186 ~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~---------------------------~a~~~l~~ 237 (398)
T PRK10747 186 HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQ---------------------------QAWIGLMD 237 (398)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHH---------------------------HHHHHHHH
Confidence 4455666667777777777777777777766533211 1110000 01112222
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004938 394 MYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470 (722)
Q Consensus 394 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 470 (722)
......+.+...++++.+++ .++.....+...+...|+.++|.+.+++..+. .||... .++.+....++.+++
T Consensus 238 ~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~a 313 (398)
T PRK10747 238 QAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQL 313 (398)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHH
Confidence 22233344555555555543 46667777788888888888888888887773 444421 123333455888888
Q ss_pred HHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004938 471 REIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549 (722)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 549 (722)
.+..+...+ ..|.|...+.++..++.+.|++++|.+.|++. ...|+...+..|...+...|+.++|..++++.+.+-
T Consensus 314 l~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 314 EKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 888888876 44556677888888888888888888888887 677888888888888889999999999999887653
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-11 Score=126.80 Aligned_cols=244 Identities=16% Similarity=0.159 Sum_probs=193.0
Q ss_pred CchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcC--CCCChhHHHHHHHHHHhcCCHH-HHHH
Q 004938 330 HPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA--FGGDLRVNNAIIDMYAKCGSLE-SARE 406 (722)
Q Consensus 330 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~-~A~~ 406 (722)
+..+|+..|...... +.-+......+..+|...+++++++.+|+.+.+.. ...+..+|.+.+--+-+.=.+. -|..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 567899999985443 34445667778889999999999999999998742 1235667776664332221111 1222
Q ss_pred HHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCC
Q 004938 407 VFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDP-NGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPP 485 (722)
Q Consensus 407 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 485 (722)
+.+. ....+.+|-++.++|.-+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+.... .
T Consensus 413 Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----~ 484 (638)
T KOG1126|consen 413 LIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-----V 484 (638)
T ss_pred HHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----C
Confidence 2222 234678999999999999999999999999988 677 466888888888888999999999998764 4
Q ss_pred CcchHHH---HHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHH
Q 004938 486 KYEHYGC---MVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLS 560 (722)
Q Consensus 486 ~~~~~~~---li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 560 (722)
+..+|++ |.-.|.++++++.|+-.|+++ .+.|. .+....+...+.+.|+.|+|++++++++-++|.++-.-+.-+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 5556654 667899999999999999998 77785 566677778889999999999999999999999999999999
Q ss_pred HHhhhCCCcchHHHHHHHHHhC
Q 004938 561 NIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 561 ~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
.++...+++++|...++++++.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh
Confidence 9999999999999999999873
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.8e-10 Score=119.76 Aligned_cols=459 Identities=12% Similarity=0.067 Sum_probs=261.3
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCCCCc
Q 004938 104 VFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183 (722)
Q Consensus 104 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~ 183 (722)
++-.|...|+.|+..||..++.-|+..|+.+.|- +|..|.-...+....+++.++......++.+.+. +|..
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~a 83 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLA 83 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCch
Confidence 4455666777777777777777777777777766 7777766666666777777777777777665554 5566
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHH-HHH-------CCCCCCHhHHHHHHHHHHccCChHHH---------HHHHHHHHH
Q 004938 184 VPWSVMIDGYFQNGLFDEVLNLFEE-MKM-------SNVEPDEMVLSKILSACSRAGNLSYG---------EAVHEFIID 246 (722)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~-m~~-------~g~~p~~~t~~~ll~~~~~~g~~~~a---------~~~~~~~~~ 246 (722)
.+|+.|..+|.+.|+... ++..++ |.. .|+..-..-+-..+.+| .+.+..+ +.+++..++
T Consensus 84 Dtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~--p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCC--PHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred hHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccC--cccchhHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777654 222222 211 12111111111111111 1111111 112222222
Q ss_pred cC--CCCCHhHHHH--HHHHHHh-cCChHHHHHHHHhccc-CCchHHHHHHHHHHhcCCHHHHHHHHhccCCCC----cc
Q 004938 247 NN--VALDAHLQST--LITMYAN-CGCMDMAKGLFDKVLL-KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD----LI 316 (722)
Q Consensus 247 ~g--~~~~~~~~~~--li~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~----~~ 316 (722)
.+ .+........ .++-... ...+++-..+.....+ ++..++.+++..-.-+|+++.|..++.+|.++. ..
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 22 1111000000 1111111 1223333333333333 688888999999999999999999999997762 33
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHH-----------HHHHHHH-------
Q 004938 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR-----------IHLYIDK------- 378 (722)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~-----------i~~~~~~------- 378 (722)
-|..|+-+ .+....+..+++-|.+.|+.|++.|+...+..+...|....+.. +...+..
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~ 317 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKR 317 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHH
Confidence 34445444 78888888999999999999999999888877766443222211 1111100
Q ss_pred ------------------cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------CChHHHHHHHHHHHHcCC--
Q 004938 379 ------------------NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR-------RNVISWTSMINAFAIHGD-- 431 (722)
Q Consensus 379 ------------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~-- 431 (722)
.|+.....+|...+. ...+|.-++..++-..+.. .++..|..++.-|.+.-+
T Consensus 318 l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~ 396 (1088)
T KOG4318|consen 318 LRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERH 396 (1088)
T ss_pred HHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhh
Confidence 122222333332222 2235666666666666553 234455444444432111
Q ss_pred --------------------HHHHHHHHHHHHHcCCCCCH----------------------------HHHHHHHHHHHh
Q 004938 432 --------------------ARNALIFFNKMKDESIDPNG----------------------------VTFIGVLYACSH 463 (722)
Q Consensus 432 --------------------~~~A~~~~~~m~~~g~~p~~----------------------------~t~~~ll~a~~~ 463 (722)
..+..++... ..||. ..-+.++..|..
T Consensus 397 ~~~~i~~~~qgls~~l~se~tp~vsell~~-----lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~s 471 (1088)
T KOG4318|consen 397 ICSRIYYAGQGLSLNLNSEDTPRVSELLEN-----LRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNS 471 (1088)
T ss_pred HHHHHHHHHHHHHhhhchhhhHHHHHHHHH-----hCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHH
Confidence 1111111111 12222 112334444555
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCCHHHH
Q 004938 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP-----FAPNVVIWGSLMAACRVHGEIELA 538 (722)
Q Consensus 464 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a 538 (722)
.-+..+++..-+.... +.++ ..|..||+.+......++|..+.++.. +.-|...+..+.+...+++....+
T Consensus 472 e~n~lK~l~~~ekye~-~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl 547 (1088)
T KOG4318|consen 472 EYNKLKILCDEEKYED-LLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDL 547 (1088)
T ss_pred HHHHHHHHHHHHHHHH-HHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHH
Confidence 5455555544333332 1222 678999999999999999999999883 233455677788888899999999
Q ss_pred HHHHHHHHcc---CCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCCcc
Q 004938 539 EFAAKQLLQL---DPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILK 586 (722)
Q Consensus 539 ~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 586 (722)
..+++++.+. .|........+.+.-...|..+...+..+-+...|+.-
T Consensus 548 ~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 548 STILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 9988888763 34334555667777788899999999999998888765
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.1e-10 Score=119.39 Aligned_cols=142 Identities=8% Similarity=-0.018 Sum_probs=85.5
Q ss_pred HHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHH
Q 004938 402 ESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF---IGVLYACSHAGLVDEGREIFA 475 (722)
Q Consensus 402 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~ 475 (722)
+...+..+..++ .+...+..+...+...|+.++|.+.+++..+. .||.... ..........++.+.+.+.++
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 344444444443 46777777888888888888888888888774 4554321 111112233466666767666
Q ss_pred HhHhhcCCCCCc--chHHHHHHHHHhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004938 476 SMTNEYNIPPKY--EHYGCMVDLFGRANLLREALELVET--M-PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ 547 (722)
Q Consensus 476 ~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 547 (722)
...+. .|-+. ....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|..++++.+.
T Consensus 324 ~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 324 KQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66652 22233 4455666666667777777776663 2 4456666666666666666777777666666543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-12 Score=131.62 Aligned_cols=226 Identities=18% Similarity=0.252 Sum_probs=105.6
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHH
Q 004938 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIID 393 (722)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 393 (722)
|...|..+.......+++++|++.++++...+.. +...+..++.. ...+++++|.++.....+.. ++...+..++.
T Consensus 43 ~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~ 118 (280)
T PF13429_consen 43 DPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQ 118 (280)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred cccccccccccccccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccc--cccchhhHHHH
Confidence 4555666666666677788888888877765422 34445555554 57777888877776655432 45556667778
Q ss_pred HHHhcCCHHHHHHHHHhcC-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCH
Q 004938 394 MYAKCGSLESAREVFERMR-----RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLV 467 (722)
Q Consensus 394 ~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~ 467 (722)
.+.+.++++++.++++.+. ..+...|..+...+.+.|+.++|++.+++..+ ..|+ ......++..+...|+.
T Consensus 119 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~P~~~~~~~~l~~~li~~~~~ 196 (280)
T PF13429_consen 119 LYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE--LDPDDPDARNALAWLLIDMGDY 196 (280)
T ss_dssp -HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHCTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHCCCh
Confidence 8888888888888888754 25677888888889999999999999999988 4676 55677888888999999
Q ss_pred HHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004938 468 DEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQL 545 (722)
Q Consensus 468 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 545 (722)
+++.+++....+. .+.+...+..+..+|...|+.++|+..+++. ...| |..+...+..++...|+.++|..+.+++
T Consensus 197 ~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 197 DEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999888773 3667788889999999999999999999988 3345 6677788888999999999999998887
Q ss_pred Hc
Q 004938 546 LQ 547 (722)
Q Consensus 546 ~~ 547 (722)
++
T Consensus 275 ~~ 276 (280)
T PF13429_consen 275 LR 276 (280)
T ss_dssp --
T ss_pred cc
Confidence 65
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.2e-10 Score=118.03 Aligned_cols=285 Identities=13% Similarity=0.044 Sum_probs=168.6
Q ss_pred CCChhHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHH
Q 004938 196 NGLFDEVLNLFEEMKMSNVEPDE-MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKG 274 (722)
Q Consensus 196 ~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 274 (722)
.|+++.|.+.+.+..+. .|+. ..+.....+....|+.+.|.+.+..+.+....+...+.-.....+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 45555555555554433 2332 22223334444556666666666555543222222233333555555555555555
Q ss_pred HHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHH
Q 004938 275 LFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTML 354 (722)
Q Consensus 275 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 354 (722)
.++.+.+ ....+...+..+...+.+.|++++|.+++..+.+.++.+......
T Consensus 175 ~l~~l~~----------------------------~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~ 226 (409)
T TIGR00540 175 GVDKLLE----------------------------MAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFAD 226 (409)
T ss_pred HHHHHHH----------------------------hCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 5333211 111244556667777777777777777777777765432221111
Q ss_pred HHHHHH---HccCCchHHHHHHHHHHHcC---CCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChHH---HHHHH
Q 004938 355 SVISAC---AHLGVLDQAQRIHLYIDKNA---FGGDLRVNNAIIDMYAKCGSLESAREVFERMRR--RNVIS---WTSMI 423 (722)
Q Consensus 355 ~ll~~~---~~~g~~~~a~~i~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~---~~~li 423 (722)
.-..+. ...+..+.+.+.+..+.+.. .+.+...+..+...+...|+.++|.+++++..+ ||... +....
T Consensus 227 l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~ 306 (409)
T TIGR00540 227 LEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLP 306 (409)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHH
Confidence 111111 12222222233443333322 124777888888899999999999999988775 33321 12222
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhc
Q 004938 424 NAFAIHGDARNALIFFNKMKDESIDPNGV---TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRA 500 (722)
Q Consensus 424 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 500 (722)
......++.+.+++.+++..+. .|+.. ...++...|.+.|++++|.++|+.... +...|+.+.+..+...+.+.
T Consensus 307 ~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~~~~La~ll~~~ 383 (409)
T TIGR00540 307 IPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDANDLAMAADAFDQA 383 (409)
T ss_pred hhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHHHHHHHHHHHHc
Confidence 2233457788888888887773 56654 455778889999999999999995433 35578888888999999999
Q ss_pred CCHHHHHHHHHhC
Q 004938 501 NLLREALELVETM 513 (722)
Q Consensus 501 g~~~~A~~~~~~~ 513 (722)
|+.++|.+++++.
T Consensus 384 g~~~~A~~~~~~~ 396 (409)
T TIGR00540 384 GDKAEAAAMRQDS 396 (409)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999874
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-08 Score=102.10 Aligned_cols=413 Identities=11% Similarity=0.018 Sum_probs=255.2
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc-hhhHHHHHHHH
Q 004938 85 SNKFIRAISWSHRPKHALKVFLKMLNEGLTID-RFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSD-PFVQTGLVGMY 162 (722)
Q Consensus 85 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~ 162 (722)
+-..-+-|-++|.+++|++.|.+.++. .|| +.-|.....+|...|+++...+.-...++. .|+ +-.+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 344556678899999999999999884 577 566777777888899999888877766654 343 33455555677
Q ss_pred HhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHH---------HHC--CCCCCHhHHHHHHHHHHcc
Q 004938 163 GACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM---------KMS--NVEPDEMVLSKILSACSRA 231 (722)
Q Consensus 163 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~--g~~p~~~t~~~ll~~~~~~ 231 (722)
-..|++++|+.= +|-.++..++..+.-.-.+.+++... .+. .+.|+.....+....+...
T Consensus 194 E~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 194 EQLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred HhhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 777888877632 23333444443333333333333221 111 1234433333333322110
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc-CChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhcc
Q 004938 232 GNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANC-GCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM 310 (722)
Q Consensus 232 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~ 310 (722)
- . ..+...+-..|...-..+=..|... ..+..|...+.+- ...+...
T Consensus 265 ~--~------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~------------------------~~~~~~~ 312 (606)
T KOG0547|consen 265 P--K------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEE------------------------CLGSESS 312 (606)
T ss_pred c--c------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHH------------------------hhhhhhh
Confidence 0 0 0000000001111111111111110 0122222221110 0001111
Q ss_pred CCCC---------cchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCC
Q 004938 311 VEKD---------LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAF 381 (722)
Q Consensus 311 ~~~~---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~ 381 (722)
...+ ..+.......+.-.|+...|...|+..+.....++. .|.-+..+|....+.++..+.|+.+.+.+
T Consensus 313 ~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld- 390 (606)
T KOG0547|consen 313 LSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD- 390 (606)
T ss_pred ccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-
Confidence 1111 112222233445568888899999988876433333 27677778889999999999999998875
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004938 382 GGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458 (722)
Q Consensus 382 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 458 (722)
+.+..+|..=..++.-.+++++|..-|++... .++..|-.+.-+..+.+++++++..|++.+.. ++--...|+...
T Consensus 391 p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fA 469 (606)
T KOG0547|consen 391 PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFA 469 (606)
T ss_pred CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHH
Confidence 55677888788888888999999999998876 34556666666677888999999999999885 333356888888
Q ss_pred HHHHhcCCHHHHHHHHHHhHhhcCCCCC-------cchH--HHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 004938 459 YACSHAGLVDEGREIFASMTNEYNIPPK-------YEHY--GCMVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMA 527 (722)
Q Consensus 459 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~--~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~ 527 (722)
..+...+++++|.+.|+..++ +.|+ ...+ -.++-.-- .+++..|.+++++. .+.|. ...+.+|..
T Consensus 470 eiLtDqqqFd~A~k~YD~ai~---LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq 545 (606)
T KOG0547|consen 470 EILTDQQQFDKAVKQYDKAIE---LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQ 545 (606)
T ss_pred HHHhhHHhHHHHHHHHHHHHh---hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 999999999999999999875 3333 1111 12222222 38899999999988 77775 468899999
Q ss_pred HHHHcCCHHHHHHHHHHHHccC
Q 004938 528 ACRVHGEIELAEFAAKQLLQLD 549 (722)
Q Consensus 528 ~~~~~g~~~~a~~~~~~~~~~~ 549 (722)
.-.+.|++++|+++|++...+-
T Consensus 546 ~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 546 FELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred HHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999999999987654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.9e-08 Score=106.01 Aligned_cols=422 Identities=15% Similarity=0.082 Sum_probs=250.0
Q ss_pred CCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh-HHH
Q 004938 147 GFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY---RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEM-VLS 222 (722)
Q Consensus 147 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~ 222 (722)
.+..|..+|..|.-+...+|+++.+.+.|++... .....|+.+...|.-.|.-..|+.+++.-....-.|+.. .+-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4567889999999999999999999999987653 233459999999999999999999998876543335443 343
Q ss_pred HHHHHHH-ccCChHHHHHHHHHHHHc--CC--CCCHhHHHHHHHHHHhc----C-------ChHHHHHHHHhcccC---C
Q 004938 223 KILSACS-RAGNLSYGEAVHEFIIDN--NV--ALDAHLQSTLITMYANC----G-------CMDMAKGLFDKVLLK---N 283 (722)
Q Consensus 223 ~ll~~~~-~~g~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~----g-------~~~~A~~~~~~~~~~---~ 283 (722)
..-..|. +.+..+++..+-..+++. +. ......|-.+.-+|... . ...++.+.+++..+. |
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3444454 446677777666666652 11 11233344444444321 1 123344445544332 2
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHhccC----CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 004938 284 LVVSTAMVSGYSRAGQVEDARLIFDQMV----EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359 (722)
Q Consensus 284 ~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 359 (722)
..+.-.+.--|+..++++.|.+...+.. ..+...|..+.-.+...+++.+|+.+.+.....- .-|..-...-+..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHI 556 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhh
Confidence 2222233334555666666665555442 2245566666666666666666666666554320 1111111111222
Q ss_pred HHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCh-HHHHHHHHHHHHcCCHH
Q 004938 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR-----RNV-ISWTSMINAFAIHGDAR 433 (722)
Q Consensus 360 ~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~-~~~~~li~~~~~~g~~~ 433 (722)
-...++.+++......++.. |... ......|+-....+.+..+.- .+. .++..+.. ..+ -+..
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~--------we~~-~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~-l~a-~~~~ 625 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLAL--------WEAE-YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS-LVA-SQLK 625 (799)
T ss_pred hhhcccHHHHHHHHHHHHHH--------HHhh-hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH-HHH-hhhh
Confidence 22344555554444433321 0000 000011112222333333221 111 12222211 111 1111
Q ss_pred HHHHHHHHHHHcCCCCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHH
Q 004938 434 NALIFFNKMKDESIDPNG--------VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLRE 505 (722)
Q Consensus 434 ~A~~~~~~m~~~g~~p~~--------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 505 (722)
.+..-. .|...-+.|+. ..|......+...+..++|...+.+..+ ..+-....|......+...|.++|
T Consensus 626 ~~~se~-~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~E 702 (799)
T KOG4162|consen 626 SAGSEL-KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEE 702 (799)
T ss_pred hccccc-ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHH
Confidence 110000 02222222322 2345556678889999999988888775 445566778888889999999999
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 506 ALELVETM-PFAPN-VVIWGSLMAACRVHGEIELAEF--AAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 506 A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
|.+.|... .+.|+ +.+..++...+.+.|+...|.. ++..+++++|.++.+|..|+.++.+.|+.++|.+.|....+
T Consensus 703 A~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 703 AKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 99999887 67786 4688889999999998888888 99999999999999999999999999999999999998876
Q ss_pred CC
Q 004938 582 RG 583 (722)
Q Consensus 582 ~g 583 (722)
..
T Consensus 783 Le 784 (799)
T KOG4162|consen 783 LE 784 (799)
T ss_pred hc
Confidence 53
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.8e-10 Score=108.98 Aligned_cols=196 Identities=12% Similarity=0.062 Sum_probs=158.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004938 385 LRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYAC 461 (722)
Q Consensus 385 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 461 (722)
...+..+...|...|++++|.+.|++..+ .+...+..+...|...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 45667777888888888888888887653 345677888888889999999999999888752 33445677778888
Q ss_pred HhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 004938 462 SHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAE 539 (722)
Q Consensus 462 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 539 (722)
...|++++|.+.++.+......+.....+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 8999999999999998863222334556777888899999999999999887 4344 4567888888999999999999
Q ss_pred HHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 540 FAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 540 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
..++++++..|+++..+..++.++...|++++|..+.+.+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999888888888899999999999999998887755
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-08 Score=99.47 Aligned_cols=289 Identities=14% Similarity=0.112 Sum_probs=179.0
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 004938 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275 (722)
Q Consensus 196 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 275 (722)
.|++..|.++..+-.+.+-.| ...|..-..+.-..|+.+.+-..+.++.+..-.++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466777777666655554332 2344445555566677777777777776654455555666666666667777666666
Q ss_pred HHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHH
Q 004938 276 FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355 (722)
Q Consensus 276 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 355 (722)
.++ +.+|...++........+|.+.|++.+.+.++..|.+.|+--|...-
T Consensus 176 v~~----------------------------ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-- 225 (400)
T COG3071 176 VDQ----------------------------LLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-- 225 (400)
T ss_pred HHH----------------------------HHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH--
Confidence 443 34455556777777888888888888888888888887754443210
Q ss_pred HHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCH
Q 004938 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDA 432 (722)
Q Consensus 356 ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 432 (722)
++ ...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.
T Consensus 226 ---------------~l-----------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~ 279 (400)
T COG3071 226 ---------------RL-----------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDH 279 (400)
T ss_pred ---------------HH-----------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCCh
Confidence 00 011223333322222233333333344332 3455555566666677777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 004938 433 RNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVET 512 (722)
Q Consensus 433 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 512 (722)
++|.++.++..+.+..|+ ...+-.+.+.++.+.-++..+.-.+.++..| ..+.+|...|.+.+.|.+|.+.|+.
T Consensus 280 ~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~lea 353 (400)
T COG3071 280 DEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEA 353 (400)
T ss_pred HHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 777777777777666665 2223345566777666666666666444333 6677777777788888888877776
Q ss_pred C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004938 513 M-PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ 547 (722)
Q Consensus 513 ~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 547 (722)
. +..|+...|+-+..++.+.|+.++|.+..++.+.
T Consensus 354 Al~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 354 ALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6 6677777888788888888888888777777663
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.6e-12 Score=87.67 Aligned_cols=50 Identities=32% Similarity=0.707 Sum_probs=47.6
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHc
Q 004938 181 RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR 230 (722)
Q Consensus 181 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 230 (722)
||+++||++|++|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.5e-09 Score=98.47 Aligned_cols=247 Identities=15% Similarity=0.119 Sum_probs=187.5
Q ss_pred hcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCCHHH
Q 004938 327 ENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD---LRVNNAIIDMYAKCGSLES 403 (722)
Q Consensus 327 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~ 403 (722)
-+++.++|.++|-+|.+.. +-+..+-.++.+.|.+.|..|.|+.+|+.+.++.--+. ....-.|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3578999999999998742 22344556677788899999999999999887521111 2233467788999999999
Q ss_pred HHHHHHhcCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHH
Q 004938 404 AREVFERMRRRNV---ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV----TFIGVLYACSHAGLVDEGREIFAS 476 (722)
Q Consensus 404 A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~ 476 (722)
|+.+|..+.+.+. .....|+..|-+..++++|++.-+++...|-++..+ .|.-+........+++.|..++.+
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999999887333 466778899999999999999999999876565543 366666777778899999999999
Q ss_pred hHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCC
Q 004938 477 MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPNV--VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD 553 (722)
Q Consensus 477 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 553 (722)
..+ -.+..+..--.+.+.+...|+++.|.+.++.. ...|+. .+...|..+|...|+.+++...+.++.+..++..
T Consensus 206 Alq--a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 206 ALQ--ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HHh--hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 887 34455666667889999999999999999988 445663 5778889999999999999999999999888754
Q ss_pred chHHHHHHHhhhCCCcchHHHHHH
Q 004938 554 GALVLLSNIYAKDKRWQDVGELRK 577 (722)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~a~~~~~ 577 (722)
.-..+...-....-.+.|..+..
T Consensus 284 -~~l~l~~lie~~~G~~~Aq~~l~ 306 (389)
T COG2956 284 -AELMLADLIELQEGIDAAQAYLT 306 (389)
T ss_pred -HHHHHHHHHHHhhChHHHHHHHH
Confidence 44444554444444445554443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.1e-09 Score=110.60 Aligned_cols=230 Identities=14% Similarity=0.145 Sum_probs=171.7
Q ss_pred hhHHHHHHHHHccCCchHHHHHHHHHHHc-----CC-CCCh-hHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CC
Q 004938 351 VTMLSVISACAHLGVLDQAQRIHLYIDKN-----AF-GGDL-RVNNAIIDMYAKCGSLESAREVFERMRR--------RN 415 (722)
Q Consensus 351 ~t~~~ll~~~~~~g~~~~a~~i~~~~~~~-----~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~ 415 (722)
.|...+...|...|+++.|..++...++. |. .|.+ ...+.+...|...+++++|..+|+++.. .+
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45566777888888888888888877653 21 1222 2234567788889999999988888753 12
Q ss_pred ---hHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHhHhhcC--C
Q 004938 416 ---VISWTSMINAFAIHGDARNALIFFNKMKD-----ESIDPN-GV-TFIGVLYACSHAGLVDEGREIFASMTNEYN--I 483 (722)
Q Consensus 416 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~-~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~ 483 (722)
..+++.|...|...|++++|...+++..+ .|..+. .. -++.+...|...+.+++|..+++...+.+. .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 25777888889999999988888877544 222222 22 466777789999999999999988776543 2
Q ss_pred CCC----cchHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-
Q 004938 484 PPK----YEHYGCMVDLFGRANLLREALELVETM---------PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQL- 548 (722)
Q Consensus 484 ~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 548 (722)
.++ ..+|+.|...|...|+++||+++++++ +..+. ...++.|..+|.+.+++++|.++|.+...+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 357899999999999999999999886 12232 456778899999999999999999887653
Q ss_pred ---CCCC---CchHHHHHHHhhhCCCcchHHHHHHHHH
Q 004938 549 ---DPDH---DGALVLLSNIYAKDKRWQDVGELRKSMK 580 (722)
Q Consensus 549 ---~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 580 (722)
.|++ ..+|.+|+.+|...|++++|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4554 4577799999999999999999988875
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.3e-08 Score=96.84 Aligned_cols=274 Identities=11% Similarity=0.045 Sum_probs=189.4
Q ss_pred CCCHHHHHHHHhcCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHH
Q 004938 165 CGKILDARLMFDKMSYR---DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH 241 (722)
Q Consensus 165 ~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 241 (722)
.|++..|+++..+-.+. -+..|..-+.+--+.|+.+.+-.++.+.-+..-.++...+.+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 48899999888765432 333466666777888999999999988877544556666777777788889999999888
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCc-----------hHHHHHHHHHHhcCCHHHHHHHHhcc
Q 004938 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL-----------VVSTAMVSGYSRAGQVEDARLIFDQM 310 (722)
Q Consensus 242 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~f~~~ 310 (722)
+.+.+.+ +.++.+.......|.+.|++.....++.++.+.+. .+|+.+++-....+..+.-...++..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 8888876 44677888889999999999999999888865532 35666666655555555555566666
Q ss_pred CCC---CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhH
Q 004938 311 VEK---DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRV 387 (722)
Q Consensus 311 ~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~ 387 (722)
+.+ ++..-.+++.-+.+.|+.++|.++..+..+.+..|. ...+-.+.+.++.+.-.+..+...+. .+.++..
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L 330 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLL 330 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChhH
Confidence 443 556666677777788888888888888777765555 22223445666666666555555543 2334466
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004938 388 NNAIIDMYAKCGSLESAREVFERMRR--RNVISWTSMINAFAIHGDARNALIFFNKMKD 444 (722)
Q Consensus 388 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 444 (722)
+.+|...|.+.+.|.+|...|+...+ ++..+|+-+..++.+.|+..+|.+.+++...
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 66777777777777777777765542 6666777777777777777777666666544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.5e-07 Score=94.82 Aligned_cols=441 Identities=14% Similarity=0.120 Sum_probs=245.4
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHH--HHHHHH--
Q 004938 88 FIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTG--LVGMYG-- 163 (722)
Q Consensus 88 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~~-- 163 (722)
=++-+..+|++++|.....+++..+ +-|...+..-+-++.+.+.+++|..+.+. .+ -..+++. +=.+||
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~---~~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NG---ALLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cc---hhhhcchhhHHHHHHHH
Confidence 3555667888899999988888765 22445555556667778888888744432 21 1112222 234444
Q ss_pred hCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH-ccCChHHHHHHHH
Q 004938 164 ACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACS-RAGNLSYGEAVHE 242 (722)
Q Consensus 164 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~~~a~~~~~ 242 (722)
+.+..|+|+..++....-+...-..-...+-+.|++++|+++|+.+.+.+.. | +-..+.+-+ ..+. +... .
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a~~a---~l~~-~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLAVAA---ALQV-Q 162 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHHHHH---hhhH-H
Confidence 6788888888888555445445555667778888888888888888766432 2 211111110 0000 0111 0
Q ss_pred HHHHcCCCCCHhHHHH---HHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhcc-CCCC----
Q 004938 243 FIIDNNVALDAHLQST---LITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM-VEKD---- 314 (722)
Q Consensus 243 ~~~~~g~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~-~~~~---- 314 (722)
.+......| ..+|.. ..-.+...|++.+|+++++... ++-.+- .+.|
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~------------------------~~~~e~l~~~d~~eE 217 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKAL------------------------RICREKLEDEDTNEE 217 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHH------------------------HHHHHhhcccccchh
Confidence 111111122 222222 2344566777888877765441 111100 1110
Q ss_pred -c-----chHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHH---HHHccCCchH--HHHHHHH--------
Q 004938 315 -L-----ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVIS---ACAHLGVLDQ--AQRIHLY-------- 375 (722)
Q Consensus 315 -~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~---~~~~~g~~~~--a~~i~~~-------- 375 (722)
. ..--.|.-.+...|+-++|..++...+... .+|........+ +...-.++-. +...++.
T Consensus 218 eie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~ 296 (652)
T KOG2376|consen 218 EIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEF 296 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHH
Confidence 0 011223345566677777777777777654 344432222211 1111111111 1111110
Q ss_pred ---HHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-hHHHHHHHHH-HH-HcCCHHHHHHHHHHHHHcCCCC
Q 004938 376 ---IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN-VISWTSMINA-FA-IHGDARNALIFFNKMKDESIDP 449 (722)
Q Consensus 376 ---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~-~~-~~g~~~~A~~~~~~m~~~g~~p 449 (722)
............-+.++.+|. +..+.+.++-...+... ...+.+++.. +. +......|.+++...-+. .|
T Consensus 297 ~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p 372 (652)
T KOG2376|consen 297 LLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HP 372 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CC
Confidence 000000112222345666654 45567777777776532 3344444443 22 233577788888777664 44
Q ss_pred CH--HHHHHHHHHHHhcCCHHHHHHHHH--------HhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC------
Q 004938 450 NG--VTFIGVLYACSHAGLVDEGREIFA--------SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM------ 513 (722)
Q Consensus 450 ~~--~t~~~ll~a~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------ 513 (722)
.. +.....+......|+++.|.+++. .+.+ .+.. +.+...++.+|.+.+.-+-|.+++.+.
T Consensus 373 ~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~-~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~ 449 (652)
T KOG2376|consen 373 EKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE-AKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRK 449 (652)
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh-hccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHH
Confidence 44 345555667778999999999998 4443 2333 456678888998888876666666654
Q ss_pred --CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHH
Q 004938 514 --PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRK 577 (722)
Q Consensus 514 --~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 577 (722)
.-.+. ..+|.-+..--.++|+.++|...++++++.+|++......+..+|+... .+.|..+-+
T Consensus 450 ~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k 515 (652)
T KOG2376|consen 450 QQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSK 515 (652)
T ss_pred hcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhh
Confidence 11222 2344444445567899999999999999999999999999998887653 445555443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.3e-08 Score=94.89 Aligned_cols=158 Identities=11% Similarity=0.077 Sum_probs=73.4
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCC----hhHHHHHHHHHH
Q 004938 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD----LRVNNAIIDMYA 396 (722)
Q Consensus 321 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~----~~~~~~li~~~~ 396 (722)
|..-|...|-+|.|..+|..+.+.| .--......++..|-...++++|..+-..+.+.+-.+. ...|.-|...+.
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~ 191 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL 191 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh
Confidence 3344445555555555555554432 11222334444444444455555444444444332221 112333444444
Q ss_pred hcCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004938 397 KCGSLESAREVFERMRRR---NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473 (722)
Q Consensus 397 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 473 (722)
...+.+.|..++.+..+. .+..--.+.+.+...|+++.|++.++...+.+..--..+...|..+|.+.|+.+++...
T Consensus 192 ~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 192 ASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 445555555555554431 12222233344555666666666666665532111123445555566666666666666
Q ss_pred HHHhHh
Q 004938 474 FASMTN 479 (722)
Q Consensus 474 ~~~~~~ 479 (722)
+..+.+
T Consensus 272 L~~~~~ 277 (389)
T COG2956 272 LRRAME 277 (389)
T ss_pred HHHHHH
Confidence 655554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.20 E-value=5e-11 Score=84.02 Aligned_cols=50 Identities=22% Similarity=0.489 Sum_probs=47.8
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004938 414 RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463 (722)
Q Consensus 414 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 463 (722)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-06 Score=89.79 Aligned_cols=444 Identities=12% Similarity=0.100 Sum_probs=264.5
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHh-CCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhC
Q 004938 118 FSFPPILKAIARAEGLLEGMQVHGLGTKL-GFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQN 196 (722)
Q Consensus 118 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 196 (722)
..|..-+..+...+++..-+..|+..+.. .+.....+|...+......|-++-+.+++++-..-++..-+--|..+++.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKS 182 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 34666667777888888888888877664 23344567777888878888888899998888777777788888888999
Q ss_pred CChhHHHHHHHHHHHC------CCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCC--CCC--HhHHHHHHHHHHhc
Q 004938 197 GLFDEVLNLFEEMKMS------NVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV--ALD--AHLQSTLITMYANC 266 (722)
Q Consensus 197 g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~--~~~--~~~~~~li~~~~~~ 266 (722)
+++++|.+.+...... ..+.+...|.-+....++..+.-....+ +.+++.|+ -+| ...|++|.+-|.+.
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 9999998888776432 1233444566555555555443333322 22223332 223 35688888889999
Q ss_pred CChHHHHHHHHhcccC--CchHHHHHHHHHHhcCCHHHHHHHH-h---ccCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 004938 267 GCMDMAKGLFDKVLLK--NLVVSTAMVSGYSRAGQVEDARLIF-D---QMVEKDLICWSAMISGYAENNHPQEALKLFNE 340 (722)
Q Consensus 267 g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~f-~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 340 (722)
|.+++|..+|++.... .+.-++.+.+.|+.-..-.-+..+= . .-.+.+...+ +-.+..|+.
T Consensus 262 g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl-------------~~~~a~~e~ 328 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDL-------------ELHMARFES 328 (835)
T ss_pred hhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhH-------------HHHHHHHHH
Confidence 9999999888877554 3444555555554422211111110 0 0000111111 112222222
Q ss_pred HHhCC-----------CCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCC------ChhHHHHHHHHHHhcCCHHH
Q 004938 341 MQVCG-----------MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG------DLRVNNAIIDMYAKCGSLES 403 (722)
Q Consensus 341 m~~~g-----------~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~ 403 (722)
+...+ -+-+..++..-.. ...|+..+-...+.++++. +.| -...|..+.+.|-..|+++.
T Consensus 329 lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~ 405 (835)
T KOG2047|consen 329 LMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDD 405 (835)
T ss_pred HHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence 22211 0112223322222 2245556666667766654 122 23457778888888888888
Q ss_pred HHHHHHhcCCCC---h----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------C-C------HHHHHHHHH
Q 004938 404 AREVFERMRRRN---V----ISWTSMINAFAIHGDARNALIFFNKMKDESID----------P-N------GVTFIGVLY 459 (722)
Q Consensus 404 A~~~~~~~~~~~---~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----------p-~------~~t~~~ll~ 459 (722)
|+.+|++..+-+ + .+|-.-...-.++.+++.|+++.++.....-. | . ...|...+.
T Consensus 406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D 485 (835)
T KOG2047|consen 406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD 485 (835)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence 888888876522 2 34555555566778888888887776542111 1 1 112333344
Q ss_pred HHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-C-C-CCCH-HHHHHHHHHHHH---c
Q 004938 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-P-F-APNV-VIWGSLMAACRV---H 532 (722)
Q Consensus 460 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~-~p~~-~~~~~ll~~~~~---~ 532 (722)
.-...|-++....+++.+..-.-..|. ..-.....+.....++++.+.+++- + + -|++ ..|++.+.-+.+ .
T Consensus 486 leEs~gtfestk~vYdriidLriaTPq--ii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg 563 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIATPQ--IIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG 563 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC
Confidence 444567777778888888763222232 2222333445667788999999886 2 2 3454 588887776543 3
Q ss_pred CCHHHHHHHHHHHHccCCCCC--chHHHHHHHhhhCCCcchHHHHHHHHH
Q 004938 533 GEIELAEFAAKQLLQLDPDHD--GALVLLSNIYAKDKRWQDVGELRKSMK 580 (722)
Q Consensus 533 g~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~ 580 (722)
..+|.|..+|+++++.-|... ..|...+..-.+-|.-..|..++++..
T Consensus 564 ~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 564 TKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 378999999999999877422 234455555566688888888888754
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.7e-09 Score=116.52 Aligned_cols=244 Identities=12% Similarity=0.035 Sum_probs=179.4
Q ss_pred CchHHHHHHHHHHhCCCCCCh-hhHHHHHHHHH---------ccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 004938 330 HPQEALKLFNEMQVCGMKPDK-VTMLSVISACA---------HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399 (722)
Q Consensus 330 ~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~---------~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g 399 (722)
..++|+.+|++..+. .|+. ..+..+..++. ..+++++|...++.+++.+ +.+...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 457899999998875 4544 34444443332 2345789999999998874 456778888888999999
Q ss_pred CHHHHHHHHHhcCC--C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHH
Q 004938 400 SLESAREVFERMRR--R-NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV-TFIGVLYACSHAGLVDEGREIFA 475 (722)
Q Consensus 400 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 475 (722)
++++|...|++..+ | +...|..+...+...|++++|+..+++..+ +.|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998765 3 456788889999999999999999999988 466643 33344555667899999999999
Q ss_pred HhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 004938 476 SMTNEYNIPP-KYEHYGCMVDLFGRANLLREALELVETM-PFAPNV-VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552 (722)
Q Consensus 476 ~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 552 (722)
++.+. .+| +...+..+...|...|++++|...++++ +..|+. ..++.+...+...| +.|...++++++..-..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 98762 334 3456778889999999999999999987 455554 44555666667777 47888788777643222
Q ss_pred CchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 553 DGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 553 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
+.....+..+|.-.|+-+.+... +++.+.|
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 22333477788888888888777 7776654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.4e-08 Score=97.47 Aligned_cols=267 Identities=13% Similarity=0.075 Sum_probs=178.3
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCc---chHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCch
Q 004938 291 VSGYSRAGQVEDARLIFDQMVEKDL---ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLD 367 (722)
Q Consensus 291 i~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 367 (722)
..-+...+++.+..++++.+.+.|+ ..+..-|..+...|+..+-+.+=.+|.+. .+-...+|-++.--|...|+..
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~s 329 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYS 329 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcH
Confidence 3334445555555555666655443 34445566777777777766666666664 2335567777776677777777
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004938 368 QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR--R-NVISWTSMINAFAIHGDARNALIFFNKMKD 444 (722)
Q Consensus 368 ~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 444 (722)
+|++.+......+ +.-...|-.+...|+-.|.-|.|...+....+ + .-..+--+.--|.+.++...|.++|.+...
T Consensus 330 eARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a 408 (611)
T KOG1173|consen 330 EARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA 408 (611)
T ss_pred HHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 8877777665532 12244667777777777888877777665432 1 111122233456778888888888888776
Q ss_pred cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcC-C----CCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-C
Q 004938 445 ESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYN-I----PPKYEHYGCMVDLFGRANLLREALELVETM-PF-A 516 (722)
Q Consensus 445 ~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~ 516 (722)
+.|+ +...+-+.-...+.+.+.+|..+|+.....-. + .....+++.|..+|.+.+.+++|+..+++. .. +
T Consensus 409 --i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~ 486 (611)
T KOG1173|consen 409 --IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP 486 (611)
T ss_pred --cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 5665 44555555556667888888888887763100 0 112345788888999999999999999887 33 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHH
Q 004938 517 PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSN 561 (722)
Q Consensus 517 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 561 (722)
.|..++.++.-.+...|+++.|.+.|.+++.+.|++..+-..|..
T Consensus 487 k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 487 KDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred CchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 477888888888999999999999999999999998655555543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.7e-07 Score=91.76 Aligned_cols=267 Identities=11% Similarity=0.015 Sum_probs=169.3
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHH---HHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 004938 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAM---ISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359 (722)
Q Consensus 283 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 359 (722)
|+.....+.+.+...|+.++|...|++...-|+.+...| .-.+.+.|+.+..-.+...+.... .-...-|..-+..
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQL 309 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhh
Confidence 444555555555555555555555665543333222221 223345566666666555554321 1111111111222
Q ss_pred HHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHH
Q 004938 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNAL 436 (722)
Q Consensus 360 ~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 436 (722)
.....+++.|..+-+..++.+ +.+...+-.-...+...|+.++|.-.|..... -+..+|.-|+.+|...|...+|.
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 233455566665555555542 22333343334556677888888888876543 46778888888888888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC
Q 004938 437 IFFNKMKDESIDPNGVTFIGVL-YACS-HAGLVDEGREIFASMTNEYNIPPK-YEHYGCMVDLFGRANLLREALELVETM 513 (722)
Q Consensus 437 ~~~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 513 (722)
-+-+..... +..+..+...+. ..|. ....-++|..++++..+ +.|+ ....+.+...+.+.|..+++..++++.
T Consensus 389 ~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 389 ALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 877765553 233444444442 2332 33446789999887764 5665 355677888899999999999999987
Q ss_pred -CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCch
Q 004938 514 -PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGA 555 (722)
Q Consensus 514 -~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 555 (722)
...||....+.|...++..+.+++|...|..++.++|++..+
T Consensus 465 L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 465 LIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 677999999999999999999999999999999999998644
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-08 Score=99.16 Aligned_cols=199 Identities=15% Similarity=0.103 Sum_probs=105.5
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 004938 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395 (722)
Q Consensus 316 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 395 (722)
..+..+...+...|++++|++.+++..+.. +.+...+..+...+...|++++|.+.+....+.. +
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~------------- 96 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-P------------- 96 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C-------------
Confidence 345555566666666666666666655432 1123334444444444555555555554444432 1
Q ss_pred HhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 004938 396 AKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDP-NGVTFIGVLYACSHAGLVDEGREIF 474 (722)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~ 474 (722)
.+...+..+...+...|++++|++.|++.......| ....+..+..++...|++++|...+
T Consensus 97 ------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 97 ------------------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred ------------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 223344445555555555555555555555432112 1233444555566666666666666
Q ss_pred HHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004938 475 ASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549 (722)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 549 (722)
+...+ ..+.+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|+.+.|....+.+.+..
T Consensus 159 ~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 159 TRALQ--IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHH--hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 66654 22333445556666666666666666666655 2222 34455555666666777777777766665543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.7e-08 Score=100.73 Aligned_cols=245 Identities=16% Similarity=0.186 Sum_probs=138.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcc-hHHHHHHHHHhcCCch
Q 004938 254 HLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLI-CWSAMISGYAENNHPQ 332 (722)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~-~~~~li~~~~~~g~~~ 332 (722)
.+...|..+|...|+++.|..+++...+. ..+.+- +..+.+. ..+.+...|...++++
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~--------------------l~k~~G-~~hl~va~~l~~~a~~y~~~~k~~ 258 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRI--------------------LEKTSG-LKHLVVASMLNILALVYRSLGKYD 258 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHH--------------------HHHccC-ccCHHHHHHHHHHHHHHHHhccHH
Confidence 34445667777777777777777664322 000000 1111111 1224556677777777
Q ss_pred HHHHHHHHHHhC-----C-CCC-ChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 004938 333 EALKLFNEMQVC-----G-MKP-DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAR 405 (722)
Q Consensus 333 ~A~~~~~~m~~~-----g-~~p-~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 405 (722)
+|..+|+++..- | ..| -..+++.+..+|.+.|++++|...++.+.+
T Consensus 259 eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~--------------------------- 311 (508)
T KOG1840|consen 259 EAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALE--------------------------- 311 (508)
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH---------------------------
Confidence 777777776531 1 011 112333344445555555555544443322
Q ss_pred HHHHhcC---CCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCCH----HHHHHHHHHHHhcCCHHHHHHHH
Q 004938 406 EVFERMR---RRNV-ISWTSMINAFAIHGDARNALIFFNKMKD---ESIDPNG----VTFIGVLYACSHAGLVDEGREIF 474 (722)
Q Consensus 406 ~~~~~~~---~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~ 474 (722)
+++... .+.+ .-++.++..+...+++++|..++++..+ .-..++. .+++.+...+.+.|.+++|.++|
T Consensus 312 -I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~ 390 (508)
T KOG1840|consen 312 -IYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELY 390 (508)
T ss_pred -HHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 111100 0111 1234444555566666666666655433 1122332 36777777778888888888887
Q ss_pred HHhHhhc----C-CCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCH-HHHHHHHHHHHHcCCHHHHH
Q 004938 475 ASMTNEY----N-IPP-KYEHYGCMVDLFGRANLLREALELVETM--------PFAPNV-VIWGSLMAACRVHGEIELAE 539 (722)
Q Consensus 475 ~~~~~~~----~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~~~ll~~~~~~g~~~~a~ 539 (722)
++++... + ..+ ...+++.|...|.+.+..++|.++|.+. +..|+. .+|..|...|...|++|.|+
T Consensus 391 k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~ 470 (508)
T KOG1840|consen 391 KKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAE 470 (508)
T ss_pred HHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHH
Confidence 7776532 1 111 2345677788888888888887777764 344554 68999999999999999999
Q ss_pred HHHHHHHc
Q 004938 540 FAAKQLLQ 547 (722)
Q Consensus 540 ~~~~~~~~ 547 (722)
++.+++..
T Consensus 471 ~~~~~~~~ 478 (508)
T KOG1840|consen 471 ELEEKVLN 478 (508)
T ss_pred HHHHHHHH
Confidence 99998873
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.7e-09 Score=113.23 Aligned_cols=211 Identities=14% Similarity=0.076 Sum_probs=164.6
Q ss_pred CCchHHHHHHHHHHHcCCCCChhHHHHHHHHHH---------hcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCC
Q 004938 364 GVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA---------KCGSLESAREVFERMRR---RNVISWTSMINAFAIHGD 431 (722)
Q Consensus 364 g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 431 (722)
+++++|...++++++.. +.+...+..+..+|. ..+++++|...+++..+ .+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 34678999999998863 334555666665544 23458899999998875 466788888888999999
Q ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHH
Q 004938 432 ARNALIFFNKMKDESIDPNG-VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK-YEHYGCMVDLFGRANLLREALEL 509 (722)
Q Consensus 432 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~ 509 (722)
+++|+..|++..+ +.|+. ..+..+..++...|++++|...++.+.+ +.|+ ...+..+...+...|++++|.+.
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999998 46764 4677888899999999999999999986 3343 33344455567778999999999
Q ss_pred HHhC--CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 510 VETM--PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 510 ~~~~--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
+++. ...|+ ...+..+...+...|+.++|...++++....|++......++..|...| ++|...++.+.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 9887 22354 4556777778889999999999999998888988888888888888888 4888877777653
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.7e-09 Score=100.83 Aligned_cols=230 Identities=16% Similarity=0.133 Sum_probs=175.9
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 004938 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398 (722)
Q Consensus 319 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~ 398 (722)
+.|..+|.+.|.+.+|.+.|+..++. .|-..||..+-++|.+..+++.|..++.+-++. ++.++.........+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45778888888888888888887775 566677888888888888888888888877765 455665566677777778
Q ss_pred CCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004938 399 GSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475 (722)
Q Consensus 399 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 475 (722)
++.++|.++|+...+ .|+.+...+..+|.-.++++-|+.+|+++.+.|+. +...|..+.-+|...+++|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 888888888887765 45566666777788888888888888888888753 55677777777888888877777777
Q ss_pred HhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCch
Q 004938 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGA 555 (722)
Q Consensus 476 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 555 (722)
+.... --.|+ .-..+|-.|......-||+..|.+.|+-++..+|++..+
T Consensus 383 RAlst-at~~~------------------------------~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 383 RALST-ATQPG------------------------------QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HHHhh-ccCcc------------------------------hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 66541 11111 123567777777777888999999999999999999999
Q ss_pred HHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 556 LVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 556 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
+++|+-+-.+.|+.++|..++...+...
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 9999988889999999999988877643
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.6e-07 Score=93.95 Aligned_cols=192 Identities=18% Similarity=0.257 Sum_probs=106.5
Q ss_pred HHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHH
Q 004938 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436 (722)
Q Consensus 357 l~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 436 (722)
+.+......+.+|..++..+..... ....|..+.+-|+..|+++.|+++|.+.- .++--|..|.+.|+++.|.
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHH
Confidence 3344445566666666665554421 22334556666777777777777665532 2344456666777777666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 004938 437 IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFA 516 (722)
Q Consensus 437 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 516 (722)
++-.+... .......|..-..-+-+.|.+.+|.+++-.+- .|+ .-|.+|-+.|..++.++++++-.
T Consensus 812 kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~-----~aiqmydk~~~~ddmirlv~k~h-- 877 (1636)
T KOG3616|consen 812 KLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPD-----KAIQMYDKHGLDDDMIRLVEKHH-- 877 (1636)
T ss_pred HHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----Cch-----HHHHHHHhhCcchHHHHHHHHhC--
Confidence 66544321 22223345444455556666666666654332 133 23566667777777666666652
Q ss_pred CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHH
Q 004938 517 PN--VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRK 577 (722)
Q Consensus 517 p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 577 (722)
|+ ..|...+..-+-..|+++.|+..|-++ .-+..-.++|...+.|++|.++-+
T Consensus 878 ~d~l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 878 GDHLHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred hhhhhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 22 234445555566666666666665443 234455566666666666666544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=8e-08 Score=96.93 Aligned_cols=227 Identities=12% Similarity=0.006 Sum_probs=155.9
Q ss_pred cCCchHHHHHHHHHHhCC-CCCC--hhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 004938 328 NNHPQEALKLFNEMQVCG-MKPD--KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESA 404 (722)
Q Consensus 328 ~g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 404 (722)
.+..+.++.-+.+++... ..|+ ...|......+...|+.++|...+..+++.. +.+...|+.+...|...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 345677777777777532 2222 2346666667788899999998888888864 45678889999999999999999
Q ss_pred HHHHHhcCC--C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhc
Q 004938 405 REVFERMRR--R-NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481 (722)
Q Consensus 405 ~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 481 (722)
...|++..+ | +..+|..+...+...|++++|++.|++..+ ..|+..........+...++.++|.+.|.....
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~-- 193 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE-- 193 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--
Confidence 999998864 3 457888888889999999999999999887 466654322222334556789999999977654
Q ss_pred CCCCCcchHHHHHHHHHhcCCH--HHHHHHHHhC-C----CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-C
Q 004938 482 NIPPKYEHYGCMVDLFGRANLL--REALELVETM-P----FAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD-H 552 (722)
Q Consensus 482 ~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~~-~----~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-~ 552 (722)
..+|+... ..++..+ .|++ +++.+.+.+. . ..| ....|..+...+...|++++|+..|+++++.+|. .
T Consensus 194 ~~~~~~~~-~~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 194 KLDKEQWG-WNIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred hCCccccH-HHHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 33343322 2333333 3444 3334333322 1 122 2357889999999999999999999999999974 4
Q ss_pred CchHHHHHHH
Q 004938 553 DGALVLLSNI 562 (722)
Q Consensus 553 ~~~~~~l~~~ 562 (722)
...-..+..+
T Consensus 271 ~e~~~~~~e~ 280 (296)
T PRK11189 271 VEHRYALLEL 280 (296)
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.6e-09 Score=98.28 Aligned_cols=190 Identities=12% Similarity=0.104 Sum_probs=161.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcC
Q 004938 389 NAIIDMYAKCGSLESAREVFERMRR--RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFI-GVLYACSHAG 465 (722)
Q Consensus 389 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~g 465 (722)
+-+..+|.+.|-+.+|.+.|+.-.+ +-+.||-.|-..|.+..++..|+.+|.+-++ ..|-.+||. .....+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHHHHH
Confidence 5677889999999999999987653 7788999999999999999999999999888 477777764 5667888899
Q ss_pred CHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004938 466 LVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM---PFAPNVVIWGSLMAACRVHGEIELAEFAA 542 (722)
Q Consensus 466 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 542 (722)
+.++|.++++...+ ..+.+++...|+...|.-.++.+-|+.+++++ +. .+...|+.+.-.|.-.++++.++..+
T Consensus 305 ~~~~a~~lYk~vlk--~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLK--LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHh--cCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999987 55667888899999999999999999999986 53 36778888888899999999999999
Q ss_pred HHHHccC--CC-CCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 543 KQLLQLD--PD-HDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 543 ~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
++++..- |+ -...|++|+.+....|++.-|.+.|+.....+
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 9998753 33 34588899999999999999999998876543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.5e-06 Score=90.47 Aligned_cols=488 Identities=13% Similarity=0.138 Sum_probs=291.7
Q ss_pred HHHHhccCCCCCCCChHHHHHHhccCCC--CCcchHH----HHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHH
Q 004938 52 LLLTSFSLPTTTPSSLYYALSIFSQIPA--PPSRVSN----KFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125 (722)
Q Consensus 52 ~li~~~~~~~~~~g~~~~A~~~f~~~~~--~~~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 125 (722)
.+.+.|.+ . |-+..|+..+..+.. +.++.-+ --+-.|.-.-.++.+++.++.|...+++.|..+...+..
T Consensus 611 ~IAqLCEK--A--GL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvat 686 (1666)
T KOG0985|consen 611 EIAQLCEK--A--GLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVAT 686 (1666)
T ss_pred HHHHHHHh--c--chHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34444445 5 666666666654432 1111000 012233334456777777888877766666555544444
Q ss_pred HHHhcCChHHHHHHHHHHHHh-----------CCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCC---------------
Q 004938 126 AIARAEGLLEGMQVHGLGTKL-----------GFGSDPFVQTGLVGMYGACGKILDARLMFDKMS--------------- 179 (722)
Q Consensus 126 ~~~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--------------- 179 (722)
-|...-..+...++|+..... ++..|+.+.-..|.+-++.|++.+..++.++-.
T Consensus 687 ky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAk 766 (1666)
T KOG0985|consen 687 KYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAK 766 (1666)
T ss_pred HHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcc
Confidence 444433344444455443321 346677788888999999999999888866542
Q ss_pred CC----------------CcccH------HHHHHHHHhCCChhHHHHHHHHHH---------------HCCCCCCHhHHH
Q 004938 180 YR----------------DIVPW------SVMIDGYFQNGLFDEVLNLFEEMK---------------MSNVEPDEMVLS 222 (722)
Q Consensus 180 ~~----------------~~~~~------~~li~~~~~~g~~~~A~~~~~~m~---------------~~g~~p~~~t~~ 222 (722)
-. |.+.| --.|..|++.=++...-.+.-.+. -.|.- ...
T Consensus 767 L~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~----~~d 842 (1666)
T KOG0985|consen 767 LTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQF----PVD 842 (1666)
T ss_pred ccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccC----ChH
Confidence 00 11111 123455555433322222211111 12222 234
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHH-HHH--------HHHhc-ccCCc--------
Q 004938 223 KILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDM-AKG--------LFDKV-LLKNL-------- 284 (722)
Q Consensus 223 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~--------~~~~~-~~~~~-------- 284 (722)
-+..-+-+.+++..-...++..+..|.. |+.++|+|...|...++-.+ -++ +.-+. .++|+
T Consensus 843 eLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYe 921 (1666)
T KOG0985|consen 843 ELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYE 921 (1666)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeec
Confidence 4566677778888888888888888854 88888888887776543221 110 00011 11111
Q ss_pred ---------------hHHHHHHHHHHhcCCHHHHHHHHhcc-----------------CCCCcchHHHHHHHHHhcCCch
Q 004938 285 ---------------VVSTAMVSGYSRAGQVEDARLIFDQM-----------------VEKDLICWSAMISGYAENNHPQ 332 (722)
Q Consensus 285 ---------------~~~~~li~~~~~~g~~~~A~~~f~~~-----------------~~~~~~~~~~li~~~~~~g~~~ 332 (722)
..|....+-+.+..+.+--.+++.+- ...|+..-+.-+.++...+-+.
T Consensus 922 rGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~ 1001 (1666)
T KOG0985|consen 922 RGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPN 1001 (1666)
T ss_pred ccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcH
Confidence 11222333344455555444444221 1125556667788888889899
Q ss_pred HHHHHHHHHHhCCCCC--ChhhHHHHHH---------------------------HHHccCCchHHHHHHHHHHHcCCCC
Q 004938 333 EALKLFNEMQVCGMKP--DKVTMLSVIS---------------------------ACAHLGVLDQAQRIHLYIDKNAFGG 383 (722)
Q Consensus 333 ~A~~~~~~m~~~g~~p--~~~t~~~ll~---------------------------~~~~~g~~~~a~~i~~~~~~~~~~~ 383 (722)
+-++++++..-..-.- +...-+.++- .+...+-+++|..+|.. +..
T Consensus 1002 eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkk-----f~~ 1076 (1666)
T KOG0985|consen 1002 ELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKK-----FDM 1076 (1666)
T ss_pred HHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHH-----hcc
Confidence 9999988876432111 1111111211 11222233344444332 223
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004938 384 DLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463 (722)
Q Consensus 384 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 463 (722)
+....+.|++ .-+.++.|.+.-++..+ ...|..+..+-.+.|...+|++-|-+. -|...|..++..+++
T Consensus 1077 n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~ 1145 (1666)
T KOG0985|consen 1077 NVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASR 1145 (1666)
T ss_pred cHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHh
Confidence 3333333433 34566666666666554 457999999999999999999877542 356679999999999
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004938 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAK 543 (722)
Q Consensus 464 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 543 (722)
.|.+++-..++..++++ .-+|..+ +.|+-+|++.+++.|-++++. .||..-...+.+-|...|.++.|.-+|.
T Consensus 1146 ~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1146 TGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred cCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH
Confidence 99999999999988774 5556554 689999999999999888874 4788888889999999999999998886
Q ss_pred HHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHH
Q 004938 544 QLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSM 579 (722)
Q Consensus 544 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 579 (722)
.. +.|..|+..+...|.+..|...-++.
T Consensus 1219 ~v--------SN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1219 NV--------SNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred Hh--------hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 54 56778888888888888877655544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3e-06 Score=88.09 Aligned_cols=227 Identities=11% Similarity=0.016 Sum_probs=139.6
Q ss_pred hcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCCCC---cccHHHHHHHHHhCCChhHHHHH
Q 004938 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD---IVPWSVMIDGYFQNGLFDEVLNL 205 (722)
Q Consensus 129 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~ 205 (722)
..+.+..+++..+.+++ +.+....+.....-.+...|+-++|......-...| .+.|..+.-.+-...++++|+..
T Consensus 19 E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 34556666666666665 333333444333344556788888888877665544 45599888888888999999999
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhccc----
Q 004938 206 FEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL---- 281 (722)
Q Consensus 206 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---- 281 (722)
|+.....+ +-|...+.-+--.-++.++++..........+.. +.....|..++.++.-.|+...|..+.+...+
T Consensus 98 y~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99987753 2344455544444456777777777666666642 33456677788888888888888888766532
Q ss_pred -CCchHHHH------HHHHHHhcCCHHHHHHHHhccCCC--Ccc-hHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChh
Q 004938 282 -KNLVVSTA------MVSGYSRAGQVEDARLIFDQMVEK--DLI-CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKV 351 (722)
Q Consensus 282 -~~~~~~~~------li~~~~~~g~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 351 (722)
++...+.- ......+.|..++|.+.+...... |-. .-.+-...+.+.++.++|..++..++.. .||..
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~ 253 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNL 253 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhH
Confidence 22222221 122345666777777666654433 222 2233445566677777777777777664 46665
Q ss_pred hHHHHHHHH
Q 004938 352 TMLSVISAC 360 (722)
Q Consensus 352 t~~~ll~~~ 360 (722)
-|...+..+
T Consensus 254 ~Yy~~l~~~ 262 (700)
T KOG1156|consen 254 DYYEGLEKA 262 (700)
T ss_pred HHHHHHHHH
Confidence 555544433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.8e-08 Score=90.14 Aligned_cols=163 Identities=18% Similarity=0.145 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHH
Q 004938 418 SWTSMINAFAIHGDARNALIFFNKMKDESIDPNG-VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL 496 (722)
Q Consensus 418 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 496 (722)
+...+.-+|.+.|+...|..-+++.++ ..|+. .++..+...|.+.|..+.|.+.|+...+ --+.+..+.|.....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHH
Confidence 344566788888999999999988888 46665 4788888888999999999999998886 445567888888999
Q ss_pred HHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchH
Q 004938 497 FGRANLLREALELVETMPFAPN----VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDV 572 (722)
Q Consensus 497 ~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 572 (722)
++..|++++|...|++.-..|+ ..+|..+.....+.|+.+.|+..+++.++.+|+.+.....++....+.|++-+|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999988833333 467888887778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 004938 573 GELRKSMKERGI 584 (722)
Q Consensus 573 ~~~~~~m~~~g~ 584 (722)
...++.....+.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999998887664
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1e-06 Score=84.68 Aligned_cols=132 Identities=17% Similarity=0.167 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHH-HHHHH
Q 004938 418 SWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG-CMVDL 496 (722)
Q Consensus 418 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~li~~ 496 (722)
--.+|.+.+.-..++++.+-.++....- +.-|..--..+..+.+..|.+.+|.++|-.+.. -.+ .+..+|. .|...
T Consensus 361 GRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~-~~i-kn~~~Y~s~LArC 437 (557)
T KOG3785|consen 361 GRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISG-PEI-KNKILYKSMLARC 437 (557)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcC-hhh-hhhHHHHHHHHHH
Confidence 3445555555566677777776666553 222333333466777788888888888876653 122 2334443 45677
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHccCCCC
Q 004938 497 FGRANLLREALELVETMPFAPNVVIWGSLM-AACRVHGEIELAEFAAKQLLQLDPDH 552 (722)
Q Consensus 497 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~p~~ 552 (722)
|.+.|..+-|++++-++....+..+...++ +-|.+.+++--|-++|..+-.++|..
T Consensus 438 yi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 438 YIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 888888888888888875444555544444 45888888888888888888888764
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.8e-08 Score=100.25 Aligned_cols=212 Identities=12% Similarity=0.056 Sum_probs=154.5
Q ss_pred CCchHHHHHHHHHHHcC-CCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHH
Q 004938 364 GVLDQAQRIHLYIDKNA-FGG--DLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALI 437 (722)
Q Consensus 364 g~~~~a~~i~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 437 (722)
+..+.+..-+.+++... ..| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566666666676532 222 245677888889999999999999998764 467899999999999999999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC--C
Q 004938 438 FFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM--P 514 (722)
Q Consensus 438 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~ 514 (722)
.|++..+ +.|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.+++. .
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999998 5776 457888888899999999999999999863 343322222233345678899999999765 2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------ccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCC
Q 004938 515 FAPNVVIWGSLMAACRVHGEIELAEFAAKQLL-------QLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGI 584 (722)
Q Consensus 515 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 584 (722)
..|+...| .......|+...+ ..++.+. ++.|+.+.+|..++.+|...|++++|...+++..+.++
T Consensus 195 ~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 33333223 2222334554433 2333333 45566778999999999999999999999999987553
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.1e-06 Score=87.17 Aligned_cols=431 Identities=14% Similarity=0.039 Sum_probs=274.6
Q ss_pred HHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCC----CC
Q 004938 107 KMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY----RD 182 (722)
Q Consensus 107 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~~ 182 (722)
+++...++-|...|..+--++...|+++.+-+.|++....- ......|+.+-..|..+|.-..|..+.++-.. |+
T Consensus 313 k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps 391 (799)
T KOG4162|consen 313 KLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPS 391 (799)
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCC
Confidence 33344466678888888888999999999999999887643 34567789999999999999999999986543 33
Q ss_pred ccc-HHHHHHHHHh-CCChhHHHHHHHHHHHC------CCCCCHhHHHHHHHHHHcc----C-------ChHHHHHHHHH
Q 004938 183 IVP-WSVMIDGYFQ-NGLFDEVLNLFEEMKMS------NVEPDEMVLSKILSACSRA----G-------NLSYGEAVHEF 243 (722)
Q Consensus 183 ~~~-~~~li~~~~~-~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~----g-------~~~~a~~~~~~ 243 (722)
..+ +-..-..|.+ -+..+++++.-.+.... -+.| ..|..+--+|... . ...++.+.++.
T Consensus 392 ~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~--~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 392 DISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKP--RGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred cchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhh--hHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 233 3222233333 46677777776666541 1222 2333333333211 1 13456777788
Q ss_pred HHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhccc----CCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchH-
Q 004938 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL----KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW- 318 (722)
Q Consensus 244 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~- 318 (722)
.++.+. .|+.+.--+.--|+..++++.|.+..++... .+...|..+.-.+.-.+++.+|+.+.+...+.-..-+
T Consensus 470 av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~ 548 (799)
T KOG4162|consen 470 AVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV 548 (799)
T ss_pred HHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh
Confidence 777653 2444444455578888999999988877743 3678999999999999999999999887654422222
Q ss_pred --HHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHH--cCCCCChhHHHHHHHH
Q 004938 319 --SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK--NAFGGDLRVNNAIIDM 394 (722)
Q Consensus 319 --~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~--~~~~~~~~~~~~li~~ 394 (722)
..-+..-..-++.++|+.....+... --+...+. ..++-....+....+.- ......+.++..+...
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~--we~~~~~q-------~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLAL--WEAEYGVQ-------QTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHH--HHhhhhHh-------hhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 22233344568888888888877641 00000000 11111111111111100 0111112233322222
Q ss_pred HH---hcCCHHHHHHHHHhcCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhc
Q 004938 395 YA---KCGSLESAREVFERMRRRN------VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG-VTFIGVLYACSHA 464 (722)
Q Consensus 395 ~~---~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~ 464 (722)
.. +.-..+.....+...+.|+ ...|......+...++.++|...+.+... +.|-. ..|......+...
T Consensus 620 ~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~ 697 (799)
T KOG4162|consen 620 VASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVK 697 (799)
T ss_pred HHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHH
Confidence 21 1111122222222222333 23566777788889999999988888766 44543 3555555677788
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 004938 465 GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALE--LVETM-PFAP-NVVIWGSLMAACRVHGEIELAEF 540 (722)
Q Consensus 465 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 540 (722)
|..++|.+.|..... -.|.++....++..++.+.|+..-|.. ++..+ .+.| +...|..|...+.+.|+.+.|-+
T Consensus 698 ~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 698 GQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred HhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence 999999999988864 334456788899999999998776766 88777 6677 56899999999999999999999
Q ss_pred HHHHHHccCCCCCc
Q 004938 541 AAKQLLQLDPDHDG 554 (722)
Q Consensus 541 ~~~~~~~~~p~~~~ 554 (722)
.|..++++++.+|.
T Consensus 776 cf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 776 CFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHhhccCCCc
Confidence 99999999987763
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.2e-06 Score=78.60 Aligned_cols=213 Identities=14% Similarity=0.075 Sum_probs=136.4
Q ss_pred CchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC-------HHHHHH
Q 004938 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD-------ARNALI 437 (722)
Q Consensus 365 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~ 437 (722)
+-+.|.+++--+.+. -|. .--.|+-.|.+.+++++|..+.+++...++.-|-.-.-.++..|+ ..-|.+
T Consensus 269 ngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqq 344 (557)
T KOG3785|consen 269 NGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQ 344 (557)
T ss_pred CCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Confidence 345666666555442 222 223456668999999999999998875444433322223334443 334444
Q ss_pred HHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-C
Q 004938 438 FFNKMKDESIDPNGV-TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP-F 515 (722)
Q Consensus 438 ~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~ 515 (722)
.|+-.-..+..-|.+ --.++.+++.-.-++++.+-++..+.. |-...|...+ .+..+++..|.+.+|+++|-++. .
T Consensus 345 ffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 345 FFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred HHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh
Confidence 444433444443332 234455555666788999999998876 4444444444 57889999999999999998882 1
Q ss_pred C-CCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHccCCCCC-chHHHHHHHhhhCCCcchHHHHHHHHHhCCCc
Q 004938 516 A-PNVVIWGSLMAAC-RVHGEIELAEFAAKQLLQLDPDHD-GALVLLSNIYAKDKRWQDVGELRKSMKERGIL 585 (722)
Q Consensus 516 ~-p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 585 (722)
+ .|..+|.+++.-| ...|..+.|..++-+. ..|.+. .....+++.|.+++.+=-|.+.|+.+......
T Consensus 423 ~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 423 EIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred hhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 2 3567777766654 5688898888876443 223332 23447788899999999999999988765543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.3e-06 Score=86.89 Aligned_cols=369 Identities=15% Similarity=0.161 Sum_probs=225.7
Q ss_pred hCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHH
Q 004938 164 ACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEF 243 (722)
Q Consensus 164 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 243 (722)
..|+++.|..-|-+.. ..--.|.+......+.+|+.+++.++.... -.--|..+..-|+..|+++.|+++|-+
T Consensus 718 ~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e 790 (1636)
T KOG3616|consen 718 QIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTE 790 (1636)
T ss_pred HHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHh
Confidence 4455666655553321 112234556677888999999988876532 334577788889999999999998854
Q ss_pred HHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccC--CchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHH
Q 004938 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK--NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAM 321 (722)
Q Consensus 244 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l 321 (722)
. ..++--|+||.+.|++++|.++-.+...| ....|-+-..-+-+.|++.+|.+++-.+..|+. -
T Consensus 791 ~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----a 856 (1636)
T KOG3616|consen 791 A---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----A 856 (1636)
T ss_pred c---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----H
Confidence 2 34567789999999999999998888666 455677777778899999999999998888864 4
Q ss_pred HHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 004938 322 ISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSL 401 (722)
Q Consensus 322 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 401 (722)
|..|-+.|..+..+++..+-.... -..|-..+..-+...|++..|+.-|-... -|.+-+++|-..+-|
T Consensus 857 iqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw 924 (1636)
T KOG3616|consen 857 IQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELW 924 (1636)
T ss_pred HHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhH
Confidence 778889999999988877643221 12455566667778899999887765443 256778899999999
Q ss_pred HHHHHHHHhcCCCCh-----HHHHHH------HHHHHHcCCHHH-------------HHHHHHHHHHcCCCCCHHHHHHH
Q 004938 402 ESAREVFERMRRRNV-----ISWTSM------INAFAIHGDARN-------------ALIFFNKMKDESIDPNGVTFIGV 457 (722)
Q Consensus 402 ~~A~~~~~~~~~~~~-----~~~~~l------i~~~~~~g~~~~-------------A~~~~~~m~~~g~~p~~~t~~~l 457 (722)
++|.++-+.--..|. ..|.-- +..+-++|-.+. |..+-+-..+. -.|. ....+
T Consensus 925 ~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~-k~~~--vhlk~ 1001 (1636)
T KOG3616|consen 925 EDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD-KMGE--VHLKL 1001 (1636)
T ss_pred HHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc-cCcc--chhHH
Confidence 999988765432222 223211 112223333333 33322222211 1111 12223
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhhc--CC-----CCCcchH---------HHHHHHHHhcCCHHHHHHHHHhCCCCCCH--
Q 004938 458 LYACSHAGLVDEGREIFASMTNEY--NI-----PPKYEHY---------GCMVDLFGRANLLREALELVETMPFAPNV-- 519 (722)
Q Consensus 458 l~a~~~~g~~~~a~~~~~~~~~~~--~~-----~~~~~~~---------~~li~~~~~~g~~~~A~~~~~~~~~~p~~-- 519 (722)
..-+...|.+++|...+-+.++-. ++ .|+..-. ..-+.++.+.+++..|.++-+.- .||.
T Consensus 1002 a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h--~~~~l~ 1079 (1636)
T KOG3616|consen 1002 AMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAH--CEDLLA 1079 (1636)
T ss_pred hhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhh--ChhhhH
Confidence 334567888998887776665421 10 0110000 01233444555555555544433 2222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHH
Q 004938 520 VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKS 578 (722)
Q Consensus 520 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 578 (722)
.++..-..+....|++.+|+.++-++ ..|+ ...+-|...+.|.+|.++-+.
T Consensus 1080 dv~tgqar~aiee~d~~kae~fllra--nkp~------i~l~yf~e~~lw~dalri~kd 1130 (1636)
T KOG3616|consen 1080 DVLTGQARGAIEEGDFLKAEGFLLRA--NKPD------IALNYFIEAELWPDALRIAKD 1130 (1636)
T ss_pred HHHhhhhhccccccchhhhhhheeec--CCCc------hHHHHHHHhccChHHHHHHHh
Confidence 23333344445577777777665332 3454 234456778889988887654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.5e-08 Score=101.02 Aligned_cols=248 Identities=13% Similarity=0.076 Sum_probs=181.1
Q ss_pred HccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHH
Q 004938 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALI 437 (722)
Q Consensus 361 ~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 437 (722)
.+.|++.+|.-.|+..++.+ +.+...|.-|.......++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 45677777777777777764 45667777777777777777777777777665 456677777778888888888988
Q ss_pred HHHHHHHcCCC-----C---CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 004938 438 FFNKMKDESID-----P---NGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALEL 509 (722)
Q Consensus 438 ~~~~m~~~g~~-----p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 509 (722)
.++.-+....+ + +...-.. .............++|-.+....+..+|++++.+|.-+|--.|.+++|.+.
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 88887653210 0 0000000 122233344556677777776566668999999999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCCccC
Q 004938 510 VETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKE 587 (722)
Q Consensus 510 ~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 587 (722)
|+.+ ..+| |..+||-|...+....+.++|+.+|.+++++.|....+.++|+-.|...|.++||.+.+=......-+..
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~ 532 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSR 532 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhccc
Confidence 9988 6777 5689999999999999999999999999999999999999999999999999999998877654322100
Q ss_pred CcccEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHh
Q 004938 588 RACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELK 627 (722)
Q Consensus 588 ~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~ 627 (722)
. ..+..++ ...|++.|...+..|.
T Consensus 533 ~---------------~~~~~~~-se~iw~tLR~als~~~ 556 (579)
T KOG1125|consen 533 N---------------HNKAPMA-SENIWQTLRLALSAMN 556 (579)
T ss_pred c---------------cccCCcc-hHHHHHHHHHHHHHcC
Confidence 0 0011222 4678888876666654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-05 Score=79.52 Aligned_cols=261 Identities=13% Similarity=0.033 Sum_probs=188.7
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhH-HHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHH
Q 004938 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM-LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAII 392 (722)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li 392 (722)
|+.....+...+...|+.++|+..|++.+.. .|+..+- ....-.+.+.|+.+....+...+.... ..+..-|-.-.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 7788889999999999999999999988763 4543321 111122356777777777776665432 11222222223
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHH
Q 004938 393 DMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDP-NGVTFIGVLYACSHAGLVD 468 (722)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~ 468 (722)
......++++.|..+-++..+ +++..+-.-...+.+.|+.++|.-.|+..+. +.| +..+|..|+.+|...|.+.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHH
Confidence 334456788888888887765 4445555555678889999999999998887 565 4578999999999999999
Q ss_pred HHHHHHHHhHhhcCCCCCcchHHHHH-HHHHh-cCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 004938 469 EGREIFASMTNEYNIPPKYEHYGCMV-DLFGR-ANLLREALELVETM-PFAPNV-VIWGSLMAACRVHGEIELAEFAAKQ 544 (722)
Q Consensus 469 ~a~~~~~~~~~~~~~~~~~~~~~~li-~~~~~-~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~ 544 (722)
+|.-.-+...+ -++.+..+...+. +.+.- ...-++|.+++++. .++|+. ...+.+...|...|..+.+..++++
T Consensus 386 EA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 386 EANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 99888777766 3445555555542 33332 23346788888887 778875 4667777788999999999999999
Q ss_pred HHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 545 LLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 545 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
.+...|++ ..++.|++++...+.+.+|.+.|......
T Consensus 464 ~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 464 HLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 99999876 58889999999999999999998877654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.8e-06 Score=88.31 Aligned_cols=255 Identities=16% Similarity=0.142 Sum_probs=157.5
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 004938 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPD-KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395 (722)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 395 (722)
++..+...|-..|++++|++++++.++. .|+ ...|..-.+.+-+.|++.+|...++.+.+.. ..|..+-+..+..+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHH
Confidence 3455677888999999999999999886 565 4567777888999999999999999998875 46778888888999
Q ss_pred HhcCCHHHHHHHHHhcCCCCh----------HHH--HHHHHHHHHcCCHHHHHHHHHHHHHc--CC---CCC--------
Q 004938 396 AKCGSLESAREVFERMRRRNV----------ISW--TSMINAFAIHGDARNALIFFNKMKDE--SI---DPN-------- 450 (722)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~~~~----------~~~--~~li~~~~~~g~~~~A~~~~~~m~~~--g~---~p~-------- 450 (722)
.++|++++|.+++....+++. ..| ..-..+|.+.|++..|++.|....+. .+ +-|
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK 352 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRK 352 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhh
Confidence 999999999999988876541 133 33456788999999998877665441 11 122
Q ss_pred --HHHHHHHHHHHHhcC-------CHHHHHHHHHHhHhhcCCCCCcch-----------HHHHHHHH---HhcCCHHHHH
Q 004938 451 --GVTFIGVLYACSHAG-------LVDEGREIFASMTNEYNIPPKYEH-----------YGCMVDLF---GRANLLREAL 507 (722)
Q Consensus 451 --~~t~~~ll~a~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~-----------~~~li~~~---~~~g~~~~A~ 507 (722)
..+|..++...-+.. -...|.+++-.+-........... -..+-.-. .+...-+++.
T Consensus 353 ~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~ 432 (517)
T PF12569_consen 353 MTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAE 432 (517)
T ss_pred ccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHH
Confidence 223444443322211 112344444444321100000000 00000000 0111111111
Q ss_pred HHHH-----------hC------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcc
Q 004938 508 ELVE-----------TM------PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQ 570 (722)
Q Consensus 508 ~~~~-----------~~------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 570 (722)
..-. +. +..||+.- ..|+ ....=+++|.++++-+.+..|++..+|..--.+|.+.|++-
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G-ekL~---~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~L 508 (517)
T PF12569_consen 433 KAAKKEPKKQQNKSKKKEKVEPKKKDDDPLG-EKLL---KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYL 508 (517)
T ss_pred HHHhhhhhhhhccccccccccCCcCCCCccH-HHHh---cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHH
Confidence 1110 00 12222211 1111 22334788999999999999999999999999999999998
Q ss_pred hHHHHHHH
Q 004938 571 DVGELRKS 578 (722)
Q Consensus 571 ~a~~~~~~ 578 (722)
-|.+.++.
T Consensus 509 LaLqaL~k 516 (517)
T PF12569_consen 509 LALQALKK 516 (517)
T ss_pred HHHHHHHh
Confidence 88876653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.4e-05 Score=79.71 Aligned_cols=128 Identities=20% Similarity=0.222 Sum_probs=82.5
Q ss_pred CChHHHHH--HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchH
Q 004938 414 RNVISWTS--MINAFAIHGDARNALIFFNKMKDESIDPNGV-TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY 490 (722)
Q Consensus 414 ~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 490 (722)
|....|.. ++..|-..|+++.|..+.+..+. ..|+.+ -|..-.+.+.+.|++++|..++++..+ -..+|...-
T Consensus 367 PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e--lD~aDR~IN 442 (700)
T KOG1156|consen 367 PTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE--LDTADRAIN 442 (700)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh--ccchhHHHH
Confidence 34444544 45667788888888888888777 367654 455666778888888888888888875 444555444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC-CCC--------HHHHHHH--HHHHHHcCCHHHHHHHHHHH
Q 004938 491 GCMVDLFGRANLLREALELVETMPF-APN--------VVIWGSL--MAACRVHGEIELAEFAAKQL 545 (722)
Q Consensus 491 ~~li~~~~~~g~~~~A~~~~~~~~~-~p~--------~~~~~~l--l~~~~~~g~~~~a~~~~~~~ 545 (722)
+--+.-..|+.+.++|.++.....- .-+ ...|-.+ ..+|.+.|++.+|++-+..+
T Consensus 443 sKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 443 SKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 3555666788888888887766511 101 2345444 33567777777776544433
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.88 E-value=0.00012 Score=79.79 Aligned_cols=411 Identities=10% Similarity=0.100 Sum_probs=236.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCCC--C-----CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 004938 155 QTGLVGMYGACGKILDARLMFDKMSY--R-----DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSA 227 (722)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~f~~m~~--~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 227 (722)
+..+...|.+.|-...|++.+..+.. + +...-..++ .|.-.-.++++++.++.|...+++-|..+...+..-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv-~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLV-NYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHH-HHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44556677778888888877776653 1 111122222 344445678888888888888888888877777777
Q ss_pred HHccCChHHHHHHHHHHHHc-----------CCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccC--------------
Q 004938 228 CSRAGNLSYGEAVHEFIIDN-----------NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK-------------- 282 (722)
Q Consensus 228 ~~~~g~~~~a~~~~~~~~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------- 282 (722)
|...-..+.-.++|+..... ++.-|+.+.--.|.+.++.|++.+.+++.++-.--
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL 767 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL 767 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccc
Confidence 77666666667777665432 34556777777888888999998888886554111
Q ss_pred ----------CchHHHHHHHHHHhcCCHHHHHHHHhccCCC----------------------------CcchHHHHHHH
Q 004938 283 ----------NLVVSTAMVSGYSRAGQVEDARLIFDQMVEK----------------------------DLICWSAMISG 324 (722)
Q Consensus 283 ----------~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----------------------------~~~~~~~li~~ 324 (722)
|..-+..=+..|.-.++..+-.++|-+-..| ..+.-+-|..-
T Consensus 768 ~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~E 847 (1666)
T KOG0985|consen 768 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEE 847 (1666)
T ss_pred cccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHH
Confidence 1111111111122222222222222221111 11122333333
Q ss_pred HHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHH----------HHHHHHHHHc-----------C---
Q 004938 325 YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA----------QRIHLYIDKN-----------A--- 380 (722)
Q Consensus 325 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a----------~~i~~~~~~~-----------~--- 380 (722)
.-+.++..--+.+++.....|. -|..|++++...|...++-.+- ..+=....+. |
T Consensus 848 vEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD 926 (1666)
T KOG0985|consen 848 VEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCD 926 (1666)
T ss_pred HHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCc
Confidence 4455555556666777777774 4778888888777654432211 1111111111 0
Q ss_pred -----CCCChhHHHHHHHHHHhcCCHHHHHHHHHh-----------cC------CCChHHHHHHHHHHHHcCCHHHHHHH
Q 004938 381 -----FGGDLRVNNAIIDMYAKCGSLESAREVFER-----------MR------RRNVISWTSMINAFAIHGDARNALIF 438 (722)
Q Consensus 381 -----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----------~~------~~~~~~~~~li~~~~~~g~~~~A~~~ 438 (722)
+...-..|..+...+.+..+.+-=.+++.+ .. ..|+..-+.-+.++...+-+.+-+++
T Consensus 927 ~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIEL 1006 (1666)
T KOG0985|consen 927 LELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIEL 1006 (1666)
T ss_pred HHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHH
Confidence 011122333344444444444433333321 11 14555666677788888888888888
Q ss_pred HHHHHHcCCCCC-HHHHHH----------------------------HHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcch
Q 004938 439 FNKMKDESIDPN-GVTFIG----------------------------VLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489 (722)
Q Consensus 439 ~~~m~~~g~~p~-~~t~~~----------------------------ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 489 (722)
+++..-..-.-+ ...... +...+...+.+++|..+|+..-. +...
T Consensus 1007 LEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~------n~~A 1080 (1666)
T KOG0985|consen 1007 LEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDM------NVSA 1080 (1666)
T ss_pred HHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcc------cHHH
Confidence 888764211100 111111 11223344556666666654321 1222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCc
Q 004938 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRW 569 (722)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 569 (722)
.+.|+ ...+.++.|.++-++.. .+..|..+..+-.+.|.+.+|.+-|-++ ++++.|...+++..+.|+|
T Consensus 1081 ~~VLi---e~i~~ldRA~efAe~~n---~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~ 1149 (1666)
T KOG0985|consen 1081 IQVLI---ENIGSLDRAYEFAERCN---EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKY 1149 (1666)
T ss_pred HHHHH---HHhhhHHHHHHHHHhhC---ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcH
Confidence 22222 24566777777776653 5678999999999999999999988655 7788999999999999999
Q ss_pred chHHHHHHHHHhCCC
Q 004938 570 QDVGELRKSMKERGI 584 (722)
Q Consensus 570 ~~a~~~~~~m~~~g~ 584 (722)
++-.+++...+++.-
T Consensus 1150 edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1150 EDLVKYLLMARKKVR 1164 (1666)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999887777653
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=0.0001 Score=87.69 Aligned_cols=233 Identities=10% Similarity=-0.008 Sum_probs=142.6
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCCC---CC--ChhhHHHHHHHHHccCCchHHHHHHHHHHHc----CCCC---Ch
Q 004938 318 WSAMISGYAENNHPQEALKLFNEMQVCGM---KP--DKVTMLSVISACAHLGVLDQAQRIHLYIDKN----AFGG---DL 385 (722)
Q Consensus 318 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~----~~~~---~~ 385 (722)
++.+...+...|++++|...+++.....- .+ ...++..+...+...|+++.|...+...... +... ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 45555666777888888887777653211 11 1223444555667788888888877766542 2111 12
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC------C--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHH--
Q 004938 386 RVNNAIIDMYAKCGSLESAREVFERMRR------R--NVISWTSMINAFAIHGDARNALIFFNKMKDESID-PNGVTF-- 454 (722)
Q Consensus 386 ~~~~~li~~~~~~g~~~~A~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~-- 454 (722)
..+..+...+...|++++|...+.+... + ....+..+...+...|+.++|.+.+++.....-. .....+
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 2344555667777888888888776532 1 1234444556677889999999888887542111 111111
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcc----hHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-H
Q 004938 455 ---IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE----HYGCMVDLFGRANLLREALELVETM-------PFAPN-V 519 (722)
Q Consensus 455 ---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~ 519 (722)
...+..+...|+.+.|.+++...... ...... .+..+..++...|+.++|...+++. +..++ .
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a 731 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPKP--EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN 731 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCCC--CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 11123345578888988887765431 111111 1345667788889999998888776 22222 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 004938 520 VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552 (722)
Q Consensus 520 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 552 (722)
.+...+..++...|+.++|...+++++++....
T Consensus 732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 732 RNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 356666777889999999999999999876543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=6e-06 Score=77.66 Aligned_cols=407 Identities=13% Similarity=0.073 Sum_probs=212.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCCCCCc---ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHH-HHHHHHc
Q 004938 155 QTGLVGMYGACGKILDARLMFDKMSYRDI---VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSK-ILSACSR 230 (722)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~ 230 (722)
+++.+.-+.+-.++++|++++..-.+++. ...+.|..+|-...++..|-+.++++-.. .|...-|.. -...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 45566666677788888888776655444 34667777888888888888888887653 454444432 1233445
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH--HHhcCChHHHHHHHHhccc-CCchHHHHHHHHHHhcCCHHHHHHHH
Q 004938 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITM--YANCGCMDMAKGLFDKVLL-KNLVVSTAMVSGYSRAGQVEDARLIF 307 (722)
Q Consensus 231 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~f 307 (722)
.+.+..|..+...|.+. ++...-..-+.+ ....+++..++.+.++.+. .+..+.+...-...+.|+.+.|.+-|
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 56666777776665442 121111111122 2234566666666666653 34444444444455666666666666
Q ss_pred hccCCC----CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHH--HHHHHHccCCchHHHHHHHHHHHcCC
Q 004938 308 DQMVEK----DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS--VISACAHLGVLDQAQRIHLYIDKNAF 381 (722)
Q Consensus 308 ~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~--ll~~~~~~g~~~~a~~i~~~~~~~~~ 381 (722)
+...+- ...+||.-+ +..+.|+++.|+++..++++.|++-.+. +++ ...+- ....+..-..++...
T Consensus 168 qaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPE-lgIGm~tegi-DvrsvgNt~~lh~Sa----- 239 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPE-LGIGMTTEGI-DVRSVGNTLVLHQSA----- 239 (459)
T ss_pred HHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCc-cCccceeccC-chhcccchHHHHHHH-----
Confidence 655332 234454333 3334556666666666666666542111 000 00000 000000000011100
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004938 382 GGDLRVNNAIIDMYAKCGSLESAREVFERMRR-----RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456 (722)
Q Consensus 382 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 456 (722)
-+..+|.-...+.+.|+.+.|.+.+-.|+. -|++|...+.-.- ..+++.+..+-+.-+..... -...||..
T Consensus 240 --l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFAN 315 (459)
T KOG4340|consen 240 --LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFAN 315 (459)
T ss_pred --HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHH
Confidence 012233334456788999999999999984 4677766554322 24555555555555555322 23579999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHH-HhcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcC
Q 004938 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLF-GRANLLREALELVETMPFAPN--VVIWGSLMAACRVHG 533 (722)
Q Consensus 457 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~~~~~p~--~~~~~~ll~~~~~~g 533 (722)
++-.|++..-++-|-.++.+-....-.-.+...|+ |++++ ...-..++|++-++.+.-.-. ......-+.--+..+
T Consensus 316 lLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~ 394 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNR 394 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999988888764322000001222333 33333 334556666665554410000 000000011111111
Q ss_pred C---HHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 534 E---IELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 534 ~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
+ +..+.+-|++.+++.- .+....+++|++..++.-++++|..-.+.
T Consensus 395 dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 395 DDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred cHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 1 1223334444444321 24567788899999999999999876653
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.8e-07 Score=80.31 Aligned_cols=192 Identities=15% Similarity=0.040 Sum_probs=105.2
Q ss_pred HHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHH
Q 004938 359 ACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNA 435 (722)
Q Consensus 359 ~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 435 (722)
.|...|+...|+.-++.+++.. +.+..++..+...|.+.|+.+.|.+-|++... .+-...|....-+|..|++++|
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHH
Confidence 3444444444444444444432 22334444555555555555555555554432 3344555555555666666666
Q ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-
Q 004938 436 LIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM- 513 (722)
Q Consensus 436 ~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~- 513 (722)
...|++......-|. ..||..+.-+..+.|+.+.|..+|++..+ ..+........+.......|++..|..+++..
T Consensus 123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 666666555322222 23555555555666666666666666654 23333455556666666666666666666655
Q ss_pred -CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCC
Q 004938 514 -PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD 553 (722)
Q Consensus 514 -~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 553 (722)
...++..+.-..+..-...||-+.+-+.-.++....|...
T Consensus 201 ~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 201 QRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred hcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 2335555555555556667777777666666666666654
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.5e-05 Score=77.68 Aligned_cols=212 Identities=11% Similarity=0.023 Sum_probs=128.5
Q ss_pred HHhccCCCCCCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHH--
Q 004938 54 LTSFSLPTTTPSSLYYALSIFSQIP---APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA-- 128 (722)
Q Consensus 54 i~~~~~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-- 128 (722)
++.+.. . |.+++|.+..+.+- +.+...+..-+-++.+.+++++|+.+.+.-... ..+.+-+ +=++|+
T Consensus 19 ln~~~~--~--~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~--fEKAYc~Y 90 (652)
T KOG2376|consen 19 LNRHGK--N--GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFF--FEKAYCEY 90 (652)
T ss_pred HHHhcc--c--hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhh--HHHHHHHH
Confidence 355555 5 89999988776643 235556667777888999999999666542210 1111111 345555
Q ss_pred hcCChHHHHHHHHHHHHhCCCCch-hhHHHHHHHHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHH
Q 004938 129 RAEGLLEGMQVHGLGTKLGFGSDP-FVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFE 207 (722)
Q Consensus 129 ~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 207 (722)
+.+..++|...+. |..++. .+...-...+.+.|++++|..+++.+...+...+-..+.+-+..-- .+.. -+
T Consensus 91 rlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~--a~l~-~~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA--AALQ-VQ 162 (652)
T ss_pred HcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH--Hhhh-HH
Confidence 7899999998887 343333 3444455677799999999999999977666665554443221110 0111 11
Q ss_pred HHHHCCCCCCHhHHHHHHHH---HHccCChHHHHHHHHHHHHcCCC-------CCH-------hHHHHHHHHHHhcCChH
Q 004938 208 EMKMSNVEPDEMVLSKILSA---CSRAGNLSYGEAVHEFIIDNNVA-------LDA-------HLQSTLITMYANCGCMD 270 (722)
Q Consensus 208 ~m~~~g~~p~~~t~~~ll~~---~~~~g~~~~a~~~~~~~~~~g~~-------~~~-------~~~~~li~~~~~~g~~~ 270 (722)
.|......| ..||..+.+. +...|++..|+++++...+.+.+ .+. .+.--|.-.+-..|+.+
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 244444444 3466655553 35679999999999998443211 011 11223444566778888
Q ss_pred HHHHHHHhcccC
Q 004938 271 MAKGLFDKVLLK 282 (722)
Q Consensus 271 ~A~~~~~~~~~~ 282 (722)
+|..++...+..
T Consensus 242 ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 242 EASSIYVDIIKR 253 (652)
T ss_pred HHHHHHHHHHHh
Confidence 888887777544
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.1e-05 Score=87.90 Aligned_cols=525 Identities=10% Similarity=-0.002 Sum_probs=271.3
Q ss_pred hHHHHHHHhccCCCCCCCChHHHHHHhccC---CCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCC-CCcccHHHH
Q 004938 48 LLLKLLLTSFSLPTTTPSSLYYALSIFSQI---PAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLT-IDRFSFPPI 123 (722)
Q Consensus 48 ~~~~~li~~~~~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~l 123 (722)
..+..|=..|.. . -+...|.+.|+.. ..-+..+|......|++...++.|+.+.-.--+.... .-...|..+
T Consensus 493 paf~~LG~iYrd--~--~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~r 568 (1238)
T KOG1127|consen 493 PAFAFLGQIYRD--S--DDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQR 568 (1238)
T ss_pred HHHHHHHHHHHH--H--HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhc
Confidence 456666666655 4 4666778877754 3445667888889999999999988883332221100 001112222
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCCCCcccHHH---HHHHHHhCCChh
Q 004938 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV---MIDGYFQNGLFD 200 (722)
Q Consensus 124 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~---li~~~~~~g~~~ 200 (722)
--.+...++...+..-++...+.. +.|...|..|..+|.++|++..|.++|++...-++.+|-. ....-+..|.+.
T Consensus 569 G~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 569 GPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred cccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHH
Confidence 333455667777777777777665 5578889999999999999999999998876655554322 122345678889
Q ss_pred HHHHHHHHHHHC------CCCCCHhHHHHHHHHHHccCChHH-------HHHHHHHHHHcCCCCCHhHHHHHHHHHH---
Q 004938 201 EVLNLFEEMKMS------NVEPDEMVLSKILSACSRAGNLSY-------GEAVHEFIIDNNVALDAHLQSTLITMYA--- 264 (722)
Q Consensus 201 ~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~g~~~~-------a~~~~~~~~~~g~~~~~~~~~~li~~~~--- 264 (722)
+|+..+...... +..--..++..+...+...|-... +.+.+.-.+......+...|-.+-+++.
T Consensus 648 eald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~ 727 (1238)
T KOG1127|consen 648 EALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFS 727 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHH
Confidence 998888776432 111122333333333333333222 3333333333222222233322222211
Q ss_pred --------------------hcCCh---H---HHHHHHHhc--ccCCchHHHHHHHHHHh----c----CCHHHHHHHHh
Q 004938 265 --------------------NCGCM---D---MAKGLFDKV--LLKNLVVSTAMVSGYSR----A----GQVEDARLIFD 308 (722)
Q Consensus 265 --------------------~~g~~---~---~A~~~~~~~--~~~~~~~~~~li~~~~~----~----g~~~~A~~~f~ 308 (722)
+.+.. | -+.+.+-.- ...+..+|-.++..|.+ . .+...|...+.
T Consensus 728 q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~K 807 (1238)
T KOG1127|consen 728 QEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCK 807 (1238)
T ss_pred HhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHH
Confidence 11111 0 000000000 00123344444443322 1 11223444444
Q ss_pred ccC---CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCCh
Q 004938 309 QMV---EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDL 385 (722)
Q Consensus 309 ~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~ 385 (722)
... ..+...||.|.-. ...|.+.-|..-|-+-.... +-...+|..+.-.|....+++.|.+.+....... +.+.
T Consensus 808 kaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl 884 (1238)
T KOG1127|consen 808 KAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNL 884 (1238)
T ss_pred HHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhh
Confidence 332 2345556655444 33344444444444433321 2244455555555556667777777766665542 2233
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhc-----CC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------cCCC
Q 004938 386 RVNNAIIDMYAKCGSLESAREVFERM-----RR---RNVISWTSMINAFAIHGDARNALIFFNKMKD---------ESID 448 (722)
Q Consensus 386 ~~~~~li~~~~~~g~~~~A~~~~~~~-----~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---------~g~~ 448 (722)
.-|-...-.....|+.-++..+|..- .+ ++..-|-.-..-...+|+.++-+..-+++.. .|.+
T Consensus 885 ~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p 964 (1238)
T KOG1127|consen 885 VQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHP 964 (1238)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCc
Confidence 33333333334456666666666541 11 3444444444444556665554444333221 1233
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHH----HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 004938 449 PNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC----MVDLFGRANLLREALELVETMPFAPNVVIWGS 524 (722)
Q Consensus 449 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 524 (722)
-+...|........+.+.++.|.+...+.+.-...+-+...|+. ....+...|.++.|..-+...+..-|..+-.+
T Consensus 965 ~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt 1044 (1238)
T KOG1127|consen 965 QLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGT 1044 (1238)
T ss_pred chhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhh
Confidence 33456777777777777777777666655432122234444443 33445557777777766665544444444443
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCCchHH---HHHHHhhhCCCcchHHHHHHHHHh
Q 004938 525 LMAACRVHGEIELAEFAAKQLLQLDPDHDGALV---LLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 525 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
-+.. .-.++++++.+.|++++.+..++...-+ .++......+.-+.|...+-+...
T Consensus 1045 ~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1045 DLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred hHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 3333 4467899999999999987655444333 333334456666777665544443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.3e-06 Score=85.30 Aligned_cols=214 Identities=17% Similarity=0.110 Sum_probs=95.5
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh----------HHHHHHH
Q 004938 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV----------ISWTSMI 423 (722)
Q Consensus 354 ~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----------~~~~~li 423 (722)
..+.++..+..+++.+.+-+....... .+..-++....+|...|.+.+....-+...+..- .....+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 334445555556666666666665543 4445555566666666666555554444332111 1122233
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCc-chHHHHHHHHHhcCC
Q 004938 424 NAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY-EHYGCMVDLFGRANL 502 (722)
Q Consensus 424 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~ 502 (722)
.+|.+.++++.|+..|.+....-..||..+ +....+++....+... -+.|.. .-...=..-+.+.|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccC
Confidence 355556666677777666555433433211 1112222222222111 111111 000011333344445
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHH
Q 004938 503 LREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580 (722)
Q Consensus 503 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 580 (722)
+.+|...+.++ ...| |...|.....+|.+.|++..|+.-.+..++++|+....|..-+.++....+|++|.+.+.+..
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555444444 2223 234444444444445555555555555555555444444444444444445555554444443
Q ss_pred h
Q 004938 581 E 581 (722)
Q Consensus 581 ~ 581 (722)
+
T Consensus 454 e 454 (539)
T KOG0548|consen 454 E 454 (539)
T ss_pred h
Confidence 3
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.3e-05 Score=76.93 Aligned_cols=289 Identities=14% Similarity=0.119 Sum_probs=169.1
Q ss_pred HHHHHHHhcCChHHHHHHHHhcccCCchHHHHHH---HHHHhcCCHHHHHHHHhccCCCCcchHHHHH---HHHHhcCCc
Q 004938 258 TLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMV---SGYSRAGQVEDARLIFDQMVEKDLICWSAMI---SGYAENNHP 331 (722)
Q Consensus 258 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~ 331 (722)
-|...+...|++.+|+.-|...++-|+..|.++. ..|...|+-..|+.-|+++.+..+..+.+-| ..+.+.|++
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence 3445555566666666666666666666555543 2455566666666666665444333333333 345666777
Q ss_pred hHHHHHHHHHHhCCCCCChh----------------hHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 004938 332 QEALKLFNEMQVCGMKPDKV----------------TMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395 (722)
Q Consensus 332 ~~A~~~~~~m~~~g~~p~~~----------------t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 395 (722)
++|..-|+..++.. |+.. .....+..+...|+...++.....+++.. +-|...+..-..+|
T Consensus 123 e~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 123 EQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCY 199 (504)
T ss_pred HHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHH
Confidence 77777777766542 2111 12222333445567777777777666642 44566666667777
Q ss_pred HhcCCHHHHHHHHHhc---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-H---HHH---------HH
Q 004938 396 AKCGSLESAREVFERM---RRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT-F---IGV---------LY 459 (722)
Q Consensus 396 ~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~---~~l---------l~ 459 (722)
...|++..|+.-+... ...|....--+-..+...|+.+.++...++-++ +.||... | -.| +.
T Consensus 200 i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e 277 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAE 277 (504)
T ss_pred HhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 7777777776554443 345566666666667777777777777777666 5676532 1 111 01
Q ss_pred HHHhcCCHHHHHHHHHHhHhhcCCCCC-----cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHc
Q 004938 460 ACSHAGLVDEGREIFASMTNEYNIPPK-----YEHYGCMVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAACRVH 532 (722)
Q Consensus 460 a~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~ 532 (722)
.....+.+.++.+-.+...+. .|. ...+..+-..+...|++.+|+....+. .+.|| +.++.--..+|...
T Consensus 278 ~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~d 354 (504)
T KOG0624|consen 278 QAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGD 354 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhh
Confidence 223345566666665555542 222 222334445556667777777776665 55565 55666666777777
Q ss_pred CCHHHHHHHHHHHHccCCCCCc
Q 004938 533 GEIELAEFAAKQLLQLDPDHDG 554 (722)
Q Consensus 533 g~~~~a~~~~~~~~~~~p~~~~ 554 (722)
..++.|+.-|+++.+.+|++..
T Consensus 355 E~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 355 EMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred HHHHHHHHHHHHHHhcCcccHH
Confidence 7777777777777777777653
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-05 Score=87.81 Aligned_cols=421 Identities=13% Similarity=0.049 Sum_probs=232.3
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCCHhHHHHHHHHH
Q 004938 153 FVQTGLVGMYGACGKILDARLMFDKMSY---RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN-VEPDEMVLSKILSAC 228 (722)
Q Consensus 153 ~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~ 228 (722)
..|..|...|....+...|.+.|+..-+ .|..++......|++...+++|..+.-..-+.. ...-...|...--.+
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 3466677777766677777777766543 345556777777777777777776632221110 000111122222234
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHH---HHHHHHhcCCHHHHHH
Q 004938 229 SRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTA---MVSGYSRAGQVEDARL 305 (722)
Q Consensus 229 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~ 305 (722)
...++...+..-++...+.. +.|...|..|..+|..+|.+..|.++|++...-++..+-. .....+..|+..+|..
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 55666666666666666654 3366677777777777777777777776664443332221 1222345566666666
Q ss_pred HHhccCCC---------C-cchHHHHHHHHHhcCCchHHHHHHHH-------HHhCC--------------------CCC
Q 004938 306 IFDQMVEK---------D-LICWSAMISGYAENNHPQEALKLFNE-------MQVCG--------------------MKP 348 (722)
Q Consensus 306 ~f~~~~~~---------~-~~~~~~li~~~~~~g~~~~A~~~~~~-------m~~~g--------------------~~p 348 (722)
.+..+... + ..++-.+...+.-.|-..+|.+.|+. ..... +.|
T Consensus 652 ~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~ 731 (1238)
T KOG1127|consen 652 ALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEP 731 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcc
Confidence 55554211 0 11121122222222222222222221 11111 112
Q ss_pred C---hhhHHHHHHHHHccCCc---h---HHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cC----CHHHHHHHHHhc
Q 004938 349 D---KVTMLSVISACAHLGVL---D---QAQRIHLYIDKNAFGGDLRVNNAIIDMYAK----CG----SLESAREVFERM 411 (722)
Q Consensus 349 ~---~~t~~~ll~~~~~~g~~---~---~a~~i~~~~~~~~~~~~~~~~~~li~~~~~----~g----~~~~A~~~~~~~ 411 (722)
| ......+..-.-..+.. | .|.+.+-. ...+..+...|..|+.-|.+ +| +...|...+...
T Consensus 732 ~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~--hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~Kka 809 (1238)
T KOG1127|consen 732 SIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA--HLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKA 809 (1238)
T ss_pred cchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH--HHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHH
Confidence 2 11111111112222222 1 01111111 11112223344444333332 22 233566666654
Q ss_pred C---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcc
Q 004938 412 R---RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE 488 (722)
Q Consensus 412 ~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 488 (722)
. ..+...||+|.-. ...|++.-|...|-+-... .+-+..+|..+.-.|.+..+++.|...|..... -.|.+..
T Consensus 810 V~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS--LdP~nl~ 885 (1238)
T KOG1127|consen 810 VSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS--LDPLNLV 885 (1238)
T ss_pred HHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhh--cCchhhH
Confidence 4 3677888887665 5567777777777666553 233456788888888899999999999998864 4444556
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHH----------HHHHHHccCCC
Q 004938 489 HYGCMVDLFGRANLLREALELVETM-------PFAPNVVIWGSLMAACRVHGEIELAEF----------AAKQLLQLDPD 551 (722)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~~g~~~~a~~----------~~~~~~~~~p~ 551 (722)
.|--..-.....|+.-++..+|..- +-.|+...|.........+|+.++-+. ..++.++..|+
T Consensus 886 ~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~ 965 (1238)
T KOG1127|consen 886 QWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQ 965 (1238)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcc
Confidence 6655555556788888888888652 345666677666666677777665544 34555667899
Q ss_pred CCchHHHHHHHhhhCCCcchHHHHHHHHH
Q 004938 552 HDGALVLLSNIYAKDKRWQDVGELRKSMK 580 (722)
Q Consensus 552 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 580 (722)
...+|...+....+.+.+++|.+...+..
T Consensus 966 ~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 966 LCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888776653
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.76 E-value=5e-06 Score=88.83 Aligned_cols=126 Identities=17% Similarity=0.086 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 004938 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACR 530 (722)
Q Consensus 453 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 530 (722)
++..+...+.+.|++++|+++.+..+. .-|..++.|..-...|-+.|++++|.+.++.. ...+ |..+-+.....+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 344455566777888888888887775 23333677777777788888888888777776 3333 4444455556667
Q ss_pred HcCCHHHHHHHHHHHHccC--CCCC-------chHHHHHHHhhhCCCcchHHHHHHHHH
Q 004938 531 VHGEIELAEFAAKQLLQLD--PDHD-------GALVLLSNIYAKDKRWQDVGELRKSMK 580 (722)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~--p~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~m~ 580 (722)
+.|++++|..++......+ |... -...-.+.+|.+.|++..|.+-+..+.
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 7888888888777765544 2110 012355777888888888777666554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=0.00069 Score=72.68 Aligned_cols=117 Identities=15% Similarity=0.039 Sum_probs=74.7
Q ss_pred CCchhHHHHHHHh--ccCCCCCCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC-C--------
Q 004938 44 SQNSLLLKLLLTS--FSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNE-G-------- 112 (722)
Q Consensus 44 ~~~~~~~~~li~~--~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g-------- 112 (722)
..|+.+..++++. |.. . |+.+.|.+-...+.... .|..|.+.+++..+++-|.-.+-.|... |
T Consensus 723 ~Cd~~TRkaml~FSfyvt--i--G~MD~AfksI~~IkS~~--vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVT--I--GSMDAAFKSIQFIKSDS--VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred ccCHHHHHhhhceeEEEE--e--ccHHHHHHHHHHHhhhH--HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 6788888888873 444 5 99999988887776643 5899999999988888877766665421 1
Q ss_pred CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHHHHHh
Q 004938 113 LTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFD 176 (722)
Q Consensus 113 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 176 (722)
-.|+ .+=..+.-.....|.+++|+.+|.+-.+.. .|-..|-..|.+++|.++-+
T Consensus 797 q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE 850 (1416)
T KOG3617|consen 797 QNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAE 850 (1416)
T ss_pred hCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHh
Confidence 1122 222222223346778888888887766532 23344555566666665544
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.9e-07 Score=92.81 Aligned_cols=145 Identities=15% Similarity=0.120 Sum_probs=87.2
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHH----HhcCC
Q 004938 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLF----GRANL 502 (722)
Q Consensus 427 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~ 502 (722)
...|++++|++++.+- .+.......+..+.+.++++.|.+.++.|.+ ...| .+...+..++ .-...
T Consensus 113 ~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp CCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCc-HHHHHHHHHHHHHHhCchh
Confidence 3445566665555431 2334444455555666666666666666543 1222 2222232222 22235
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCc-chHHHHHHHH
Q 004938 503 LREALELVETM--PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRW-QDVGELRKSM 579 (722)
Q Consensus 503 ~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m 579 (722)
+.+|..+|+++ ...+++.+.+.+..++...|++++|+.+++++++.+|+++.+..+++-+....|+. +.+.+.+.++
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 67777777777 34466777777777888888888888888888888888888888888888888888 5566777776
Q ss_pred Hh
Q 004938 580 KE 581 (722)
Q Consensus 580 ~~ 581 (722)
+.
T Consensus 263 ~~ 264 (290)
T PF04733_consen 263 KQ 264 (290)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.5e-05 Score=79.30 Aligned_cols=412 Identities=14% Similarity=0.093 Sum_probs=235.6
Q ss_pred HHhccCCCCCcchHHHHHH--HHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHh---
Q 004938 72 SIFSQIPAPPSRVSNKFIR--AISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKL--- 146 (722)
Q Consensus 72 ~~f~~~~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 146 (722)
+-|-.+..=|..+-.+|+. .|+..|+.+.|++-.+.+. +...|..+.+.|.+.++++-|+-.+..|...
T Consensus 716 rdFvgle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRga 789 (1416)
T KOG3617|consen 716 RDFVGLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGA 789 (1416)
T ss_pred HHhcCccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhH
Confidence 3344445556666666665 4677899999988877655 3467889999999988888887777665432
Q ss_pred -----CCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHH
Q 004938 147 -----GFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVL 221 (722)
Q Consensus 147 -----g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 221 (722)
..+.+...-....-.-...|.+++|..++.+-.+ |..|=..|...|++++|+++-+.=..-.+ ..||
T Consensus 790 RAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Ty 861 (1416)
T KOG3617|consen 790 RALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTY 861 (1416)
T ss_pred HHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhH
Confidence 1111213333333344577999999999987654 44555677888999999998765432222 2455
Q ss_pred HHHHHHHHccCChHHHHHHHHHHH----------HcCC---------CCCHhHHHHHHHHHHhcCChHHHHHHHHhcccC
Q 004938 222 SKILSACSRAGNLSYGEAVHEFII----------DNNV---------ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK 282 (722)
Q Consensus 222 ~~ll~~~~~~g~~~~a~~~~~~~~----------~~g~---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 282 (722)
..-..-+-..+|.+.|.+.|+..- +..+ ..|...|.--..-+-..|++|.|+.+|...
T Consensus 862 y~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A--- 938 (1416)
T KOG3617|consen 862 YNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA--- 938 (1416)
T ss_pred HHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh---
Confidence 555555556677887777765431 1110 113333333333344467777777776543
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 004938 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362 (722)
Q Consensus 283 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 362 (722)
.-|-+++...|-.|+.++|-++-++-. |..+...+...|-..|++.+|...|.+.+. |...|+.|-.
T Consensus 939 --~D~fs~VrI~C~qGk~~kAa~iA~esg--d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKE 1005 (1416)
T KOG3617|consen 939 --KDYFSMVRIKCIQGKTDKAARIAEESG--DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKE 1005 (1416)
T ss_pred --hhhhhheeeEeeccCchHHHHHHHhcc--cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHh
Confidence 236666777777888888877776643 455666788888888999999888877653 3444444322
Q ss_pred cC---------------CchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------------
Q 004938 363 LG---------------VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR-------------- 413 (722)
Q Consensus 363 ~g---------------~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------- 413 (722)
.+ +.-.|...|++ .|. -....+..|-|.|.+.+|+++--+-.+
T Consensus 1006 nd~~d~L~nlal~s~~~d~v~aArYyEe---~g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~ 1077 (1416)
T KOG3617|consen 1006 NDMKDRLANLALMSGGSDLVSAARYYEE---LGG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG 1077 (1416)
T ss_pred cCHHHHHHHHHhhcCchhHHHHHHHHHH---cch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC
Confidence 22 11122222221 111 112234456677776666654322211
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC----cch
Q 004938 414 RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK----YEH 489 (722)
Q Consensus 414 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~ 489 (722)
.|+...+.-.+-+..+.++++|..++-...+ |...+..|...+ +.-..++-+.|.-...-.|+ ...
T Consensus 1078 sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~v 1147 (1416)
T KOG3617|consen 1078 SDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQV 1147 (1416)
T ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHH
Confidence 3445555555556667777777776655433 333444444332 22222222333211111122 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 004938 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIEL 537 (722)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 537 (722)
...+.+.+.++|.+.-|-+-|.+.+.+ ...+.++.+.||.++
T Consensus 1148 Leqvae~c~qQG~Yh~AtKKfTQAGdK------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1148 LEQVAELCLQQGAYHAATKKFTQAGDK------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred HHHHHHHHHhccchHHHHHHHhhhhhH------HHHHHHHHhcCCcce
Confidence 556667777888888887777776522 123445556666554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.3e-05 Score=80.03 Aligned_cols=256 Identities=9% Similarity=0.005 Sum_probs=135.1
Q ss_pred HHHhcCCchHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHc----cCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 004938 324 GYAENNHPQEALKLFNEMQVCGMKPDK-VTMLSVISACAH----LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398 (722)
Q Consensus 324 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~----~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~ 398 (722)
.+...|++++|.+.+++..+. .|+. ..+.. ...+.. .+..+.+.+.+... ....+........+...+...
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHc
Confidence 445567777777777776654 2332 22221 111212 23334444333331 111112223333455566777
Q ss_pred CCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCCHHHHHH
Q 004938 399 GSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESI-DPNG--VTFIGVLYACSHAGLVDEGRE 472 (722)
Q Consensus 399 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~ 472 (722)
|++++|.+.+++..+ .+...+..+...|...|++++|+..+++.....- .|+. ..|..+...+...|++++|..
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 777777777776654 3455666677777777777777777777665321 1222 234456666777777777777
Q ss_pred HHHHhHhhcCCCCCcchH-H--HHHHHHHhcCC------HHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004938 473 IFASMTNEYNIPPKYEHY-G--CMVDLFGRANL------LREALELVETM-PFAPNVVIWGSLMAACRVHGEIELAEFAA 542 (722)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~-~--~li~~~~~~g~------~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 542 (722)
+++.+.......+..... + .+...+...|. ++++....... +.............++...|+.+.|...+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 777764311111111111 1 22222233332 22222221111 11111122234555667788888888888
Q ss_pred HHHHccCCC---------CCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 543 KQLLQLDPD---------HDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 543 ~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
+.+....-. ........+.++...|++++|.+.+......+
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 877652211 23344567778889999999999998887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.66 E-value=7e-07 Score=88.74 Aligned_cols=226 Identities=15% Similarity=0.089 Sum_probs=143.0
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCC-CChhHHHHHHHHH
Q 004938 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG-GDLRVNNAIIDMY 395 (722)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~-~~~~~~~~li~~~ 395 (722)
....+..++...|+++.++. +..... .|.......+...+....+-+.+..-+......... .+..+......+|
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 34455677777777665443 332222 555555544444443323333333333322222222 2333333444567
Q ss_pred HhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 004938 396 AKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH----AGLVDEGR 471 (722)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~ 471 (722)
...|++++|.++++.. .+.......+..|.+.++++.|.+.++.|.+ +..|. +...+..++.. ...+.+|.
T Consensus 113 ~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp CCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchhHHHHH
Confidence 7789999998888765 5666777788889999999999999999987 34443 33344443332 34688999
Q ss_pred HHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH-HHHHHHHHHHHcc
Q 004938 472 EIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEI-ELAEFAAKQLLQL 548 (722)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~ 548 (722)
.+|+++.. ..++++.+.+.+.-+....|++++|.+++.+. ...| +..++..++-.....|+. +.+.+...++...
T Consensus 188 y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 188 YIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999877 45677888888999999999999999999886 4445 456677777777777777 7788899998889
Q ss_pred CCCCC
Q 004938 549 DPDHD 553 (722)
Q Consensus 549 ~p~~~ 553 (722)
.|+++
T Consensus 266 ~p~h~ 270 (290)
T PF04733_consen 266 NPNHP 270 (290)
T ss_dssp TTTSH
T ss_pred CCCCh
Confidence 99875
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.0001 Score=75.49 Aligned_cols=246 Identities=14% Similarity=0.069 Sum_probs=155.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCC------hhHHHHH
Q 004938 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD------LRVNNAI 391 (722)
Q Consensus 318 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~------~~~~~~l 391 (722)
...+..+.-+..+++.|++-+....... -+..-++....++...|...+....-...++.|...- ......+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3445555566666666776666665543 2333333444455555555555444444333321110 0111123
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHH
Q 004938 392 IDMYAKCGSLESAREVFERMRR--RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV-TFIGVLYACSHAGLVD 468 (722)
Q Consensus 392 i~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~ 468 (722)
..+|.+.++++.|...|++... ++... ..+....++++...+...- +.|+.. -...-.+.+.+.|++.
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~-------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDL-------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHH-------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHH
Confidence 4477788899999999988553 22211 2233445566655555444 445542 2223366788999999
Q ss_pred HHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004938 469 EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPNV-VIWGSLMAACRVHGEIELAEFAAKQLL 546 (722)
Q Consensus 469 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~ 546 (722)
.|...|.++++ ..|.|...|+...-+|.+.|.+.+|++-.+.. ...|+. ..|.-=..++....+++.|.+.|++.+
T Consensus 376 ~Av~~YteAIk--r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 376 EAVKHYTEAIK--RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHh--cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998 45778899999999999999999999877766 556653 455555566667789999999999999
Q ss_pred ccCCCCCchHHHHHHHhhhCCCcchHHHHH
Q 004938 547 QLDPDHDGALVLLSNIYAKDKRWQDVGELR 576 (722)
Q Consensus 547 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 576 (722)
+.+|++......+...+......+...++.
T Consensus 454 e~dp~~~e~~~~~~rc~~a~~~~~~~ee~~ 483 (539)
T KOG0548|consen 454 ELDPSNAEAIDGYRRCVEAQRGDETPEETK 483 (539)
T ss_pred hcCchhHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 999998877777776665433333333333
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.4e-05 Score=90.75 Aligned_cols=322 Identities=12% Similarity=0.031 Sum_probs=207.9
Q ss_pred HHHhcCChHHHHHHHHhccc----CCchHHHHHHHHHHhcCCHHHHHHHHhccCC----CC---c-----chHHHHHHHH
Q 004938 262 MYANCGCMDMAKGLFDKVLL----KNLVVSTAMVSGYSRAGQVEDARLIFDQMVE----KD---L-----ICWSAMISGY 325 (722)
Q Consensus 262 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~---~-----~~~~~li~~~ 325 (722)
.....|+++.+...++.+.. .+..........+...|++++|...++.... .+ . .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 44556788887777776632 1233333444455677888888887765421 11 1 1112233456
Q ss_pred HhcCCchHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHccCCchHHHHHHHHHHHcCC---CC--ChhHHHHHHHHHH
Q 004938 326 AENNHPQEALKLFNEMQVCGMKPDK----VTMLSVISACAHLGVLDQAQRIHLYIDKNAF---GG--DLRVNNAIIDMYA 396 (722)
Q Consensus 326 ~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~---~~--~~~~~~~li~~~~ 396 (722)
...|++++|...+++....-...+. ...+.+...+...|+++.|...+.......- .+ .......+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6889999999999998763111121 2334455566789999999999888765311 11 1234456677888
Q ss_pred hcCCHHHHHHHHHhcCC-------C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHH
Q 004938 397 KCGSLESAREVFERMRR-------R----NVISWTSMINAFAIHGDARNALIFFNKMKDE--SIDPN--GVTFIGVLYAC 461 (722)
Q Consensus 397 ~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~a~ 461 (722)
..|++++|...+++... + ....+..+...+...|++++|...+++.... ...+. ...+..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 99999999998876542 1 1223445556677789999999999887652 11222 22444556677
Q ss_pred HhcCCHHHHHHHHHHhHhhcCCCCCcchH-----HHHHHHHHhcCCHHHHHHHHHhCCC-C-CCH----HHHHHHHHHHH
Q 004938 462 SHAGLVDEGREIFASMTNEYNIPPKYEHY-----GCMVDLFGRANLLREALELVETMPF-A-PNV----VIWGSLMAACR 530 (722)
Q Consensus 462 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~-~-p~~----~~~~~ll~~~~ 530 (722)
...|+.++|.+.++.+............+ ......+...|+.++|...+..... . ... ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88999999999998876421111111111 1122445568999999999877621 1 111 12445666788
Q ss_pred HcCCHHHHHHHHHHHHccCC------CCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 531 VHGEIELAEFAAKQLLQLDP------DHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
..|+.++|...++++++... .....+..++.+|...|+.++|...+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 89999999999999987531 222356788999999999999999999988654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.8e-06 Score=83.05 Aligned_cols=180 Identities=14% Similarity=0.045 Sum_probs=117.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-h---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH----H
Q 004938 384 DLRVNNAIIDMYAKCGSLESAREVFERMRR--RN-V---ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV----T 453 (722)
Q Consensus 384 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t 453 (722)
....+..+...+.+.|++++|...|+++.. |+ . ..|..+...|...|++++|+..++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 445566677777778888888888877654 22 1 35666777777888888888888887763 44322 3
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 004938 454 FIGVLYACSHA--------GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSL 525 (722)
Q Consensus 454 ~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 525 (722)
+..+..++... |+.++|.+.|+.+... .+.+...+..+... +...... ......+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM----DYLRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH----HHHHHHH-----------HHHHHHH
Confidence 44444445443 6677777777777653 22222222222111 0011100 0011245
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCC---chHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 526 MAACRVHGEIELAEFAAKQLLQLDPDHD---GALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 526 l~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
...+...|++++|...++++++..|+++ ..+..++.+|...|++++|..+++.+..+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5668889999999999999999877654 68889999999999999999999988764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.8e-05 Score=77.68 Aligned_cols=148 Identities=15% Similarity=0.101 Sum_probs=77.3
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHH----ccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 004938 192 GYFQNGLFDEVLNLFEEMKMSNVEPD-EMVLSKILSACS----RAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANC 266 (722)
Q Consensus 192 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~----~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 266 (722)
.+...|++++|.+.+++..+. .|+ ...+.. ...+. ..+....+.+.+.. .....+........+...+...
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHc
Confidence 345566777777777666554 232 222221 11111 12333344443333 1111122233344455566677
Q ss_pred CChHHHHHHHHhcccC---CchHHHHHHHHHHhcCCHHHHHHHHhccCCC-----Cc--chHHHHHHHHHhcCCchHHHH
Q 004938 267 GCMDMAKGLFDKVLLK---NLVVSTAMVSGYSRAGQVEDARLIFDQMVEK-----DL--ICWSAMISGYAENNHPQEALK 336 (722)
Q Consensus 267 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-----~~--~~~~~li~~~~~~g~~~~A~~ 336 (722)
|++++|...+++..+. +...+..+...|...|++++|...+++.... +. ..|..+...+...|++++|+.
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 7777777777666432 3345555666666666666666666655332 11 234456667777777777777
Q ss_pred HHHHHHh
Q 004938 337 LFNEMQV 343 (722)
Q Consensus 337 ~~~~m~~ 343 (722)
+|++...
T Consensus 208 ~~~~~~~ 214 (355)
T cd05804 208 IYDTHIA 214 (355)
T ss_pred HHHHHhc
Confidence 7777643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.00093 Score=68.64 Aligned_cols=126 Identities=13% Similarity=0.108 Sum_probs=53.5
Q ss_pred hHHHHHHHHHccCCchHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hHHHHHHHHHHH
Q 004938 352 TMLSVISACAHLGVLDQAQRIHLYIDKNAFGG-DLRVNNAIIDMYAKCGSLESAREVFERMRR--RN-VISWTSMINAFA 427 (722)
Q Consensus 352 t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~ 427 (722)
+|...++...+..-++.|+.+|..+.+.+..+ ++.++++++..|| .++.+-|.++|+.-.+ +| ..--+..++-+.
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~ 446 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLS 446 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 34444444444444445555555554444333 4444444444443 2344444444443221 12 222233333344
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004938 428 IHGDARNALIFFNKMKDESIDPNG--VTFIGVLYACSHAGLVDEGREIFASMT 478 (722)
Q Consensus 428 ~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~ 478 (722)
..|+-..|..+|++....++.|+. ..|..+|.-=+.-|++..+.++-+++.
T Consensus 447 ~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 447 HLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 444444444444444444333332 234444444444444444444444433
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00045 Score=66.74 Aligned_cols=306 Identities=11% Similarity=0.056 Sum_probs=168.9
Q ss_pred HHHHHHHhCCCHHHHHHHHhcCCCCCcccHHHHH---HHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHH-HHHHHHccC
Q 004938 157 GLVGMYGACGKILDARLMFDKMSYRDIVPWSVMI---DGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSK-ILSACSRAG 232 (722)
Q Consensus 157 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~g 232 (722)
.|...+...|++.+|+.-|....+-|+..|.++. ..|...|+...|+.=|....+ ++||-..-.. --..+.+.|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcc
Confidence 3445555667777777777777776776666654 356666777777766666665 3565322110 011234556
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCC
Q 004938 233 NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312 (722)
Q Consensus 233 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~ 312 (722)
.++.|..=|+.+++.....+ ....++.+.-..++-..+
T Consensus 121 ele~A~~DF~~vl~~~~s~~-----~~~eaqskl~~~~e~~~l------------------------------------- 158 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNG-----LVLEAQSKLALIQEHWVL------------------------------------- 158 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcc-----hhHHHHHHHHhHHHHHHH-------------------------------------
Confidence 66666666666555432110 011111111111111111
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHH
Q 004938 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAII 392 (722)
Q Consensus 313 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li 392 (722)
-..+..+...|+...|+.....+++-. +.|...+..-..+|...|.+..|+.=+..+.+.. ..++...-.+-
T Consensus 159 ------~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis 230 (504)
T KOG0624|consen 159 ------VQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKIS 230 (504)
T ss_pred ------HHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHH
Confidence 112233344555555555555555431 2344444444555555555555555554444432 22233333444
Q ss_pred HHHHhcCCHHHHHHHHHhcCC--CCh----HHHHHH---------HHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHH--
Q 004938 393 DMYAKCGSLESAREVFERMRR--RNV----ISWTSM---------INAFAIHGDARNALIFFNKMKDESIDPN--GVT-- 453 (722)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l---------i~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t-- 453 (722)
..+.+.|+.+.++....+..+ ||- ..|-.+ +......+++.++++..+...+. .|. .++
T Consensus 231 ~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~ 308 (504)
T KOG0624|consen 231 QLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYN 308 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeee
Confidence 555555666555555555543 211 111111 12234577888888888887774 444 233
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 004938 454 -FIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN 518 (722)
Q Consensus 454 -~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 518 (722)
|..+-.++...|.+.+|++...++.. -.+.|+.++.--.++|.-...+++|+.-|+.. ...++
T Consensus 309 ~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 309 GFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred eeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 34444567788999999999998875 33445888988999999999999999999887 44443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.2e-06 Score=77.80 Aligned_cols=122 Identities=11% Similarity=0.041 Sum_probs=93.0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 004938 437 IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PF 515 (722)
Q Consensus 437 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 515 (722)
.+|++.++ +.|+. +.....++...|++++|...|+.+.. --+.+...|..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45555555 45654 44556677788888888888888775 34556777888888888888888888888887 44
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhh
Q 004938 516 AP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564 (722)
Q Consensus 516 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 564 (722)
.| +...|..+..++...|+.++|...+++++++.|+++..+...+.+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 55 56788888888888999999999999999999998888877776543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.3e-06 Score=93.17 Aligned_cols=200 Identities=16% Similarity=0.136 Sum_probs=167.6
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004938 382 GGDLRVNNAIIDMYAKCGSLESAREVFERMRR--------RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT 453 (722)
Q Consensus 382 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 453 (722)
+.....|-..+......+++++|++++++... .-...|.++++.....|.-+...++|+++.+- .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 44566777888888899999999999998764 12358999999888889888999999999873 223456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 004938 454 FIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN---VVIWGSLMAAC 529 (722)
Q Consensus 454 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~ 529 (722)
|..|...|.+.+..++|.++++.|.++++ .....|...++.+.+..+-+.|.+++.++ ..-|. .......+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88999999999999999999999999776 56788999999999999999999999887 33333 34455556667
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCCc
Q 004938 530 RVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGIL 585 (722)
Q Consensus 530 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 585 (722)
.++|+.+++..+|+-.+.-.|.-...|..+++.-.+.|..+.++.+|++....++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 78999999999999999999999999999999999999999999999999988765
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.5e-06 Score=79.05 Aligned_cols=146 Identities=13% Similarity=0.149 Sum_probs=107.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCH
Q 004938 424 NAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLL 503 (722)
Q Consensus 424 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 503 (722)
..|...|+++.+....+.+.. |. ..+...++.+++...++...+ .-+.+...|..+...|...|++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCH
Confidence 456777777665443322211 11 012235666777777777766 4566778888888888899999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHH
Q 004938 504 REALELVETM-PFAP-NVVIWGSLMAAC-RVHGE--IELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKS 578 (722)
Q Consensus 504 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 578 (722)
++|...+++. ...| +...+..+..++ ...|+ .++|..+++++++.+|+++.++..++..+...|++++|...+++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999988887 5556 466777777764 66676 58999999999999999999999999999999999999999999
Q ss_pred HHhCC
Q 004938 579 MKERG 583 (722)
Q Consensus 579 m~~~g 583 (722)
+.+..
T Consensus 170 aL~l~ 174 (198)
T PRK10370 170 VLDLN 174 (198)
T ss_pred HHhhC
Confidence 87754
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.1e-07 Score=59.93 Aligned_cols=33 Identities=27% Similarity=0.438 Sum_probs=26.8
Q ss_pred CCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCC
Q 004938 147 GFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179 (722)
Q Consensus 147 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 179 (722)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888774
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00021 Score=67.59 Aligned_cols=293 Identities=9% Similarity=0.014 Sum_probs=164.4
Q ss_pred CChHHHHHHhccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHH-HHHHHhcCChHHHHHHH
Q 004938 65 SSLYYALSIFSQIPA---PPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPI-LKAIARAEGLLEGMQVH 140 (722)
Q Consensus 65 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~~~~~~a~~~~ 140 (722)
.++++|.+++....+ ++....+.|-.+|-...++..|-+.|+++.... |...-|..- ...+-+.+.+..|.++.
T Consensus 24 ~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY~A~i~ADALrV~ 101 (459)
T KOG4340|consen 24 ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLYKACIYADALRVA 101 (459)
T ss_pred hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 567777776644322 244456666667777777777777777776543 333323221 23344566677777777
Q ss_pred HHHHHhCCCCchhhHHHHHH----HHHhCCCHHHHHHHHhcCC-CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 004938 141 GLGTKLGFGSDPFVQTGLVG----MYGACGKILDARLMFDKMS-YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE 215 (722)
Q Consensus 141 ~~~~~~g~~~~~~~~~~li~----~~~~~g~~~~A~~~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 215 (722)
..|... ....+..+. .....+++..++.+.++.+ +.+..+.+...-...+.|++++|++-|+...+-|--
T Consensus 102 ~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy 176 (459)
T KOG4340|consen 102 FLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY 176 (459)
T ss_pred HHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCC
Confidence 665431 122222211 1224567777777777777 355555555555566778888888888777654333
Q ss_pred CCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHH----HHHHHHHHhcCC-hHHHHHHHHhcccCCchHHHHH
Q 004938 216 PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ----STLITMYANCGC-MDMAKGLFDKVLLKNLVVSTAM 290 (722)
Q Consensus 216 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~----~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~l 290 (722)
-....|+..+. ..+.++...|.+...+++.+|+...+..- +-.+++-. .|+ ...+..- =+..+|.-
T Consensus 177 qpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrs-vgNt~~lh~Sa-------l~eAfNLK 247 (459)
T KOG4340|consen 177 QPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRS-VGNTLVLHQSA-------LVEAFNLK 247 (459)
T ss_pred CchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhc-ccchHHHHHHH-------HHHHhhhh
Confidence 33456665543 34557777788877777777654222110 00000000 000 0000000 01123334
Q ss_pred HHHHHhcCCHHHHHHHHhccCCC-----CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 004938 291 VSGYSRAGQVEDARLIFDQMVEK-----DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365 (722)
Q Consensus 291 i~~~~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 365 (722)
...+.+.|+.+.|.+.+-.|+.+ |++|...+.-.- ..+++.+..+-+.-++..+. -...||..++-.||+..-
T Consensus 248 aAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNey 325 (459)
T KOG4340|consen 248 AAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEY 325 (459)
T ss_pred hhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHH
Confidence 44457788888888888888765 666655443221 23455555555565655432 345688888888888888
Q ss_pred chHHHHHHHH
Q 004938 366 LDQAQRIHLY 375 (722)
Q Consensus 366 ~~~a~~i~~~ 375 (722)
++.|..++.+
T Consensus 326 f~lAADvLAE 335 (459)
T KOG4340|consen 326 FDLAADVLAE 335 (459)
T ss_pred HhHHHHHHhh
Confidence 8888777654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.5e-05 Score=87.99 Aligned_cols=218 Identities=14% Similarity=0.148 Sum_probs=174.1
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHhcccC--------CchHHHHHHHHHHhcCCHHHHHHHHhccCCC-C-cchHH
Q 004938 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK--------NLVVSTAMVSGYSRAGQVEDARLIFDQMVEK-D-LICWS 319 (722)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~-~~~~~ 319 (722)
+.+...|-..|......++.++|++++++.+.. -...|.++++.-..-|.-+...++|++..+- | ...|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 445677888888889999999999999888543 2357888888888888888889999998665 3 34688
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCC-CCChhHHHHHHHHHHhc
Q 004938 320 AMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAF-GGDLRVNNAIIDMYAKC 398 (722)
Q Consensus 320 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~-~~~~~~~~~li~~~~~~ 398 (722)
.|...|.+.+.+++|.++|+.|.+. ..-....|...+..+.+..+-+.|..++.++++.-. ...+......+.+-.++
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 8999999999999999999999875 334667788888899999999999999999887521 12456667778888899
Q ss_pred CCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHH
Q 004938 399 GSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV--TFIGVLYACSHAGLVD 468 (722)
Q Consensus 399 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~ 468 (722)
|+.+.++.+|+.... +-...|+..|+.-.++|+.+.+..+|++....++.|-.. .|.-.|..=...|+-+
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 999999999998875 356789999999999999999999999999988887653 4455554444444433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.9e-05 Score=77.42 Aligned_cols=162 Identities=15% Similarity=0.086 Sum_probs=93.7
Q ss_pred HHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 004938 401 LESAREVFERMRR---RNVISWTSMINAFAIHGDA--RNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIF 474 (722)
Q Consensus 401 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 474 (722)
+++++..++++.+ ++..+|+...-.+.+.|+. ++++.+++++++. .|. ..+|.....++.+.|+++++++.+
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4555555544432 2333444433333333432 4455555555552 332 345555555555666666666666
Q ss_pred HHhHhhcCCCCCcchHHHHHHHHHhc---CC----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc----CCHHHHHHH
Q 004938 475 ASMTNEYNIPPKYEHYGCMVDLFGRA---NL----LREALELVETM-PFAP-NVVIWGSLMAACRVH----GEIELAEFA 541 (722)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~li~~~~~~---g~----~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~ 541 (722)
+.+++ .-+.+...|+....++.+. |. .++++++..++ ...| |...|+.+...+... ++..+|...
T Consensus 166 ~~~I~--~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 166 HQLLE--EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHH--HCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 66655 2233444455444444332 22 24566666444 5555 457888888888773 345678888
Q ss_pred HHHHHccCCCCCchHHHHHHHhhhC
Q 004938 542 AKQLLQLDPDHDGALVLLSNIYAKD 566 (722)
Q Consensus 542 ~~~~~~~~p~~~~~~~~l~~~~~~~ 566 (722)
+.+++..+|+++.++..|+++|+..
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhh
Confidence 8888888999988889999999863
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1e-05 Score=75.59 Aligned_cols=134 Identities=17% Similarity=0.116 Sum_probs=100.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 004938 448 DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM--PFAPNVVIWGSL 525 (722)
Q Consensus 448 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 525 (722)
.|+......+-.++...|+-+....+...... ..+.|......++....+.|++.+|...+++. +-+||...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 44432225555666777777777777766543 34445556666788888888888888888887 344577888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 526 MAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 526 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
.-+|-+.|+++.|...|.+++++.|+++..+.+++..|.-.|++++|..++......+
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 8888888888888888888888888888888888888888888888888888776654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.6e-06 Score=74.63 Aligned_cols=107 Identities=11% Similarity=-0.063 Sum_probs=92.0
Q ss_pred HHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004938 472 EIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549 (722)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 549 (722)
.+++...+ +.|+ .+..+...+...|++++|.+.|+.. ...| +...|..+..++...|++++|...|+++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34555443 3344 4566788899999999999999987 5556 57899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 550 PDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 550 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
|+++.++..++.++...|++++|...++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987754
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.7e-07 Score=56.72 Aligned_cols=33 Identities=33% Similarity=0.582 Sum_probs=23.2
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 004938 380 AFGGDLRVNNAIIDMYAKCGSLESAREVFERMR 412 (722)
Q Consensus 380 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 412 (722)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777777663
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.7e-05 Score=72.14 Aligned_cols=155 Identities=11% Similarity=0.084 Sum_probs=113.4
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004938 392 IDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGR 471 (722)
Q Consensus 392 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 471 (722)
+-.|.+.|+++....-.+.+..+. ..+...++.++++..+++..+.. +.|...|..+...+...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777777777654443332221 01123566778888888777742 344567888888899999999999
Q ss_pred HHHHHhHhhcCCCCCcchHHHHHHHH-HhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004938 472 EIFASMTNEYNIPPKYEHYGCMVDLF-GRANL--LREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLL 546 (722)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 546 (722)
..|+...+ ..+.+...+..+..++ .+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..+++++
T Consensus 94 ~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99998886 4455678888888864 67777 58999999988 5556 56788888889999999999999999999
Q ss_pred ccCCCCCchHH
Q 004938 547 QLDPDHDGALV 557 (722)
Q Consensus 547 ~~~p~~~~~~~ 557 (722)
++.|.+..-+.
T Consensus 172 ~l~~~~~~r~~ 182 (198)
T PRK10370 172 DLNSPRVNRTQ 182 (198)
T ss_pred hhCCCCccHHH
Confidence 99987765443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.2e-06 Score=72.21 Aligned_cols=118 Identities=11% Similarity=0.066 Sum_probs=96.5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhh
Q 004938 487 YEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564 (722)
Q Consensus 487 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 564 (722)
.+..-.+...+...|++++|..+|+-. .+.| +..-|-.|...|...|++++|+..|.++..++|+++.++..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344445666677889999999999887 4556 46788999999999999999999999999999999999999999999
Q ss_pred hCCCcchHHHHHHHHHhCCCccCCcccEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHh
Q 004938 565 KDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELK 627 (722)
Q Consensus 565 ~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~ 627 (722)
..|+.+.|.+.|+...... ..+|+..++.++.+.....+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 9999999999999887642 135666677777766666554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.5e-05 Score=86.76 Aligned_cols=191 Identities=13% Similarity=0.074 Sum_probs=140.6
Q ss_pred hhHHHHHH-HHHccCCchHH-HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHH
Q 004938 351 VTMLSVIS-ACAHLGVLDQA-QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINA 425 (722)
Q Consensus 351 ~t~~~ll~-~~~~~g~~~~a-~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 425 (722)
.|...++. +.+..|..+++ .++++++.+ ++..........++..-...... .++..+-.|...
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i 95 (694)
T PRK15179 28 PTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARA 95 (694)
T ss_pred cHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHH
Confidence 34444444 45666766655 566666543 22322222222222222222111 457788888899
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHH
Q 004938 426 FAIHGDARNALIFFNKMKDESIDPNGV-TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR 504 (722)
Q Consensus 426 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 504 (722)
..+.|..++|+.+++...+ +.||.. ....+..++.+.+.+++|....+.... .-+.+......+..++.+.|+++
T Consensus 96 ~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~~ 171 (694)
T PRK15179 96 LEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEIGQSE 171 (694)
T ss_pred HHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcchH
Confidence 9999999999999999998 688865 677788899999999999999999987 55666788889999999999999
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHH
Q 004938 505 EALELVETM-PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALV 557 (722)
Q Consensus 505 ~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 557 (722)
+|.++|++. ...|+ ..+|..+..++...|+.++|...|+++++..-+-...|.
T Consensus 172 ~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 172 QADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 999999998 33454 678999999999999999999999999987655444444
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0066 Score=66.47 Aligned_cols=67 Identities=21% Similarity=0.185 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHcCCH---HHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCCccC
Q 004938 521 IWGSLMAACRVHGEI---ELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKE 587 (722)
Q Consensus 521 ~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 587 (722)
+-+.|+..|++.++. -+|+-+++..+..+|.|..+-..|+.+|.-.|-+..|.++++.+.-+.+..+
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhc
Confidence 446777888887764 4677788888889999988888999999999999999999999977666544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.6e-05 Score=71.27 Aligned_cols=155 Identities=14% Similarity=0.136 Sum_probs=97.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh
Q 004938 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR 499 (722)
Q Consensus 420 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 499 (722)
..+-..+...|+.+....+..+.... ..-|.......+....+.|++.+|...|.+... .-++|.+.|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 33444555566666666555554331 112222333456666667777777777776665 556667777777777777
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHH
Q 004938 500 ANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRK 577 (722)
Q Consensus 500 ~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 577 (722)
.|++++|..-|.+. .+.| +....+.|.-.+.-.|+.+.|+.++..+....+.++..-.+|+.+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 77777777666665 4444 345666677677777777777777777777666666666777777777777777766543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.1e-05 Score=75.67 Aligned_cols=181 Identities=17% Similarity=0.079 Sum_probs=129.0
Q ss_pred ChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hH---HH
Q 004938 349 DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD---LRVNNAIIDMYAKCGSLESAREVFERMRR--RN-VI---SW 419 (722)
Q Consensus 349 ~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~---~~ 419 (722)
....+......+...|+++.|...++.+.+.. +.+ ...+..+...|.+.|++++|...|+++.+ |+ .. .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 45567777788899999999999999998753 222 24667788999999999999999999864 22 22 45
Q ss_pred HHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchH
Q 004938 420 TSMINAFAIH--------GDARNALIFFNKMKDESIDPNGVT-FIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY 490 (722)
Q Consensus 420 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 490 (722)
..+..++... |+.++|++.|+++... .|+... ...+... .. .. .... ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~------~~~~---------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LR------NRLA---------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HH------HHHH---------HHH
Confidence 5566666654 7889999999999884 666532 2222111 00 00 0000 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004938 491 GCMVDLFGRANLLREALELVETM----PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551 (722)
Q Consensus 491 ~~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 551 (722)
..+.+.|.+.|++++|...+++. +-.| ....|..+..++...|++++|...++.+....|+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35677889999999999999887 2233 3468889999999999999999998888766653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.8e-05 Score=83.67 Aligned_cols=210 Identities=11% Similarity=0.015 Sum_probs=133.7
Q ss_pred HHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCCHH
Q 004938 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR--RNVISWTSMINAFAIHGDAR 433 (722)
Q Consensus 356 ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~ 433 (722)
+...+.+.|-...|..+++.+. .+.-+|.+|...|+..+|..+..+..+ ||...|..+.+......-++
T Consensus 404 laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHH
Confidence 3344455555666666655443 234455666666666666655544433 45555555555555555556
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 004938 434 NALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513 (722)
Q Consensus 434 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 513 (722)
+|.++++..... .-..+.......++++++.+.|+.-.+ -.+-...+|-.+.-+..+.++++.|.+.|...
T Consensus 475 kawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 475 KAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred HHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 666665543221 001111111225666777777766554 22233456667777777888888888888766
Q ss_pred -CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 514 -PFAPNV-VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 514 -~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
...||. ..||.+-.+|.+.|+-.+|...++++++-+-++...+.+..-+..+.|.|++|.+.+.++.+..
T Consensus 546 vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 546 VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 567764 6889988889888888899999998888887777777777777788899999998888886543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00016 Score=73.58 Aligned_cols=119 Identities=21% Similarity=0.166 Sum_probs=84.2
Q ss_pred HHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHH
Q 004938 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAACRVHGEIEL 537 (722)
Q Consensus 460 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~ 537 (722)
.....|..++|+..++.+.+ ..|.|+.......+.+.+.|+.++|.+.++++ ...|+ ...+-.+..++.+.|+.++
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 44556777777777777765 44555666666777777777777777777776 45565 4566677777777777777
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHH
Q 004938 538 AEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580 (722)
Q Consensus 538 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 580 (722)
|+..++.....+|+++..|..|+.+|...|+..++...+.++.
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 7777777777777777777777777777777766666665554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=9.5e-05 Score=82.29 Aligned_cols=191 Identities=8% Similarity=0.062 Sum_probs=140.8
Q ss_pred hHHHHHHHHHhcCCchHHH-HHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHH--cCCCCChhHHHHHHH
Q 004938 317 CWSAMISGYAENNHPQEAL-KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK--NAFGGDLRVNNAIID 393 (722)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~--~~~~~~~~~~~~li~ 393 (722)
..+.+=.+...-|..++|- ++..+..+ ++ .+.+.+..+..-+-++.. ..++.+...+-.|..
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~ 94 (694)
T PRK15179 30 ILDLLEAALAEPGESEEAGRELLQQARQ------------VL---ERHAAVHKPAAALPELLDYVRRYPHTELFQVLVAR 94 (694)
T ss_pred HHhHHHHHhcCcccchhHHHHHHHHHHH------------HH---HHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHH
Confidence 3444445566667777764 34443332 22 233444333333333322 245677888999999
Q ss_pred HHHhcCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHH
Q 004938 394 MYAKCGSLESAREVFERMRR--R-NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT-FIGVLYACSHAGLVDE 469 (722)
Q Consensus 394 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~ 469 (722)
.....|++++|..+++...+ | +...+..+...+.+.+++++|+..+++... ..|+..+ ...+..++.+.|.+++
T Consensus 95 i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~~~ 172 (694)
T PRK15179 95 ALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEIGQSEQ 172 (694)
T ss_pred HHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcchHH
Confidence 99999999999999999875 4 456788889999999999999999999998 4787765 5566678889999999
Q ss_pred HHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 004938 470 GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM--PFAPNVVIWGSLM 526 (722)
Q Consensus 470 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll 526 (722)
|..+|+++.. ..+.+...+..+...+...|+.++|...|++. ...|....|+.++
T Consensus 173 A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 173 ADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 9999999997 44455788999999999999999999999988 3445555555444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00021 Score=80.28 Aligned_cols=148 Identities=14% Similarity=0.181 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004938 387 VNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463 (722)
Q Consensus 387 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 463 (722)
.+-.|..+|-+.|+.++|..+++++.+ .|+...|.+...|+.. +.++|++++.+.+.. +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 444455555555555555555555543 3444555555555555 555555555554432 333
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004938 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAK 543 (722)
Q Consensus 464 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 543 (722)
..++.++.++|..+.. ..+.+...+-.+...... ..++.--..++.-+-.-|...++++++..+++
T Consensus 182 ~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~------------~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 182 KKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLG------------HREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred hhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHh------------hhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 3445555555555543 222222222222111111 11111223344445555666777777777777
Q ss_pred HHHccCCCCCchHHHHHHHhh
Q 004938 544 QLLQLDPDHDGALVLLSNIYA 564 (722)
Q Consensus 544 ~~~~~~p~~~~~~~~l~~~~~ 564 (722)
.+++.+|.|..+...++..|.
T Consensus 248 ~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 248 KILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHhcCCcchhhHHHHHHHHH
Confidence 777777777666666666664
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.3e-05 Score=81.79 Aligned_cols=189 Identities=17% Similarity=0.167 Sum_probs=159.2
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004938 380 AFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459 (722)
Q Consensus 380 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 459 (722)
+++|--..-..+.+.+.++|-...|..+|+++ ..|.-.|.+|...|+..+|..+..+-.+ -+||..-|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34555556677889999999999999999986 4678889999999999999999988887 4889999999999
Q ss_pred HHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 004938 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIEL 537 (722)
Q Consensus 460 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 537 (722)
......-+++|.++++....+ .-..+.....+.++++++.+.++.- .+.| ...+|-.+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 988888999999999877653 1112222234579999999999865 5555 45789888888889999999
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 538 AEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 538 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
|.+.|.....++|++...+++++.+|.+.|+..+|...+++..+-+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999988766
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.6e-05 Score=78.08 Aligned_cols=116 Identities=14% Similarity=0.121 Sum_probs=86.8
Q ss_pred HHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 004938 434 NALIFFNKMK-DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVET 512 (722)
Q Consensus 434 ~A~~~~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 512 (722)
...++|-++. ..+.++|......|.-.|.-.|.+++|...|+.+.. --|.|...||-|...++...+.+||+..|++
T Consensus 412 ~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~r 489 (579)
T KOG1125|consen 412 HIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNR 489 (579)
T ss_pred HHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHH
Confidence 3444444443 344345555666666667778889999999988876 3344678889999999988999999999888
Q ss_pred C-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004938 513 M-PFAPNV-VIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551 (722)
Q Consensus 513 ~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 551 (722)
. .++|.- .++..|.-.|...|.+++|...|-.++.+.+.
T Consensus 490 ALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 490 ALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 7 778874 57777888888999999999988888877554
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00079 Score=68.01 Aligned_cols=209 Identities=12% Similarity=0.109 Sum_probs=141.0
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChh-hHHHHHHHHHccC-CchHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 004938 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKV-TMLSVISACAHLG-VLDQAQRIHLYIDKNAFGGDLRVNNAIIDM 394 (722)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g-~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 394 (722)
++..+-..+...++.++|+.+..++++. .|+.. .++.--.++...| +++++...+..+++.+ +.+..+|+.-.-.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 3444555566677888888888888874 45444 3444444555566 5788888888888764 4455566655545
Q ss_pred HHhcCCH--HHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CC
Q 004938 395 YAKCGSL--ESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHA---GL 466 (722)
Q Consensus 395 ~~~~g~~--~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~---g~ 466 (722)
+.+.|+. +++..+++.+.+ +|..+|+...-.+...|+++++++.++++++.... |...|+.....+.+. |.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 5566653 667777777764 67788998888888899999999999999986422 344555555555444 22
Q ss_pred ----HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhc----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 004938 467 ----VDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRA----NLLREALELVETM-PFAP-NVVIWGSLMAACRV 531 (722)
Q Consensus 467 ----~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 531 (722)
.++..++...++. ..|-+...|+-+..+|... +...+|.+++.+. ...| +......|+..+..
T Consensus 195 ~~~~~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 3467777767765 4566778888888888773 4456688887775 4344 45677777777764
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.011 Score=61.09 Aligned_cols=210 Identities=12% Similarity=0.100 Sum_probs=144.4
Q ss_pred hHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhcCC----CChHHHHHHHHHHHHcCCHHHHHHHH
Q 004938 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG---SLESAREVFERMRR----RNVISWTSMINAFAIHGDARNALIFF 439 (722)
Q Consensus 367 ~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~ 439 (722)
+++..+++..+..-...+..+|.++.+.--..- ..+.....++++.. .-..+|-..++.-.+..-...|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 455566666555433334455554443222111 24444555555442 33457888888888888899999999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC---CC
Q 004938 440 NKMKDESIDP-NGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM---PF 515 (722)
Q Consensus 440 ~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~ 515 (722)
.+..+.+..+ +.....+++.-++ .++.+-|.++|+.-.+++|. +...-...++-+...++-..|..+|++. .+
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999988888 4556666666544 68889999999998885554 4455578889999999999999999998 24
Q ss_pred CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCC----chHHHHHHHhhhCCCcchHHHHHHHH
Q 004938 516 APN--VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD----GALVLLSNIYAKDKRWQDVGELRKSM 579 (722)
Q Consensus 516 ~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m 579 (722)
.|| ..+|..++.--..-|++..+.++-++....-|.+. ..-..+.+-|.-.+.+..-..-++.|
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 454 47999999999999999999999988887666221 12335556666666666555444444
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.018 Score=63.21 Aligned_cols=500 Identities=13% Similarity=0.044 Sum_probs=254.4
Q ss_pred CChHHHHHHhccCC--CCCcchHHHHHHHH--HhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHH
Q 004938 65 SSLYYALSIFSQIP--APPSRVSNKFIRAI--SWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVH 140 (722)
Q Consensus 65 g~~~~A~~~f~~~~--~~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 140 (722)
+++..|....+.+- .||. .|...+.++ .+.|+.++|..+++.....+.. |..|...+-..|...+..+++..+|
T Consensus 23 ~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHH
Confidence 56666666555442 2443 455555655 4788999999888877655544 7788888888888899999999999
Q ss_pred HHHHHhCCCCchhhHHHHHHHHHhCCCHH----HHHHHHhcCCCCCcccHHHHHHHHHhC-CCh---------hHHHHHH
Q 004938 141 GLGTKLGFGSDPFVQTGLVGMYGACGKIL----DARLMFDKMSYRDIVPWSVMIDGYFQN-GLF---------DEVLNLF 206 (722)
Q Consensus 141 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~----~A~~~f~~m~~~~~~~~~~li~~~~~~-g~~---------~~A~~~~ 206 (722)
++.... .|+......+..+|.+-+++. .|.+++...+.+--.-|+. ++.+.+. ... .-|.+.+
T Consensus 101 e~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 101 ERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhccCCcccccchhHHHHHHHH
Confidence 988775 456777778888888877654 4677777666544444554 3333332 222 2344555
Q ss_pred HHHHHCC-CCCCHhHHHHHHHHHHccCChHHHHHHHH-HHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCc
Q 004938 207 EEMKMSN-VEPDEMVLSKILSACSRAGNLSYGEAVHE-FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL 284 (722)
Q Consensus 207 ~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~-~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 284 (722)
+.+.+.+ ---+..-...-+......|..++|.+++. .....-...+...-+--++.+.+.+++.+-.++-.+...++.
T Consensus 178 ~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 178 QKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 5565543 11111122222334456788899988883 333333444566667788899999999888887777765533
Q ss_pred hHHHHHHHHH----------------HhcCCHHHHHHHHhccCCC-CcchHHHHHHH---HHhcCCchHHHHHHHHHHhC
Q 004938 285 VVSTAMVSGY----------------SRAGQVEDARLIFDQMVEK-DLICWSAMISG---YAENNHPQEALKLFNEMQVC 344 (722)
Q Consensus 285 ~~~~~li~~~----------------~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~ 344 (722)
.-|...+..+ ...+..+...+..++.... .-..|-+-+.. +-.-|+.++++..|-+- -
T Consensus 258 Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k--f 335 (932)
T KOG2053|consen 258 DDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKK--F 335 (932)
T ss_pred cchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHH--h
Confidence 3254444432 2222233322222222111 11223232333 33447777765444322 2
Q ss_pred CCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChh-------HHHHHHHHHHhcCC-----HHHHHHHH----
Q 004938 345 GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLR-------VNNAIIDMYAKCGS-----LESAREVF---- 408 (722)
Q Consensus 345 g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~-------~~~~li~~~~~~g~-----~~~A~~~~---- 408 (722)
|-+|- |..=+..|...=..++-..+........ ++.. .+...+..-.-.|. -+.-..++
T Consensus 336 g~kpc---c~~Dl~~yl~~l~~~q~~~l~~~l~~~~--~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~ 410 (932)
T KOG2053|consen 336 GDKPC---CAIDLNHYLGHLNIDQLKSLMSKLVLAD--DDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLK 410 (932)
T ss_pred CCCcH---hHhhHHHhhccCCHHHHHHHHHHhhccC--CcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHH
Confidence 22221 1111111111111111111221111110 0000 00111111111111 01111111
Q ss_pred HhcCC---------C------C---hHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 004938 409 ERMRR---------R------N---VISWTSMINAFAIHGDAR---NALIFFNKMKDESIDPNGVTFIGVLYACSHAGLV 467 (722)
Q Consensus 409 ~~~~~---------~------~---~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 467 (722)
-.... | + ..+-+.|++.+.+.++.. +|+-+++.-... -+-|..+-..++..|+-.|-.
T Consensus 411 ~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~ 489 (932)
T KOG2053|consen 411 LTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAF 489 (932)
T ss_pred HHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCC
Confidence 11111 1 1 124567788888887755 455555554442 123444566777888888988
Q ss_pred HHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 004938 468 DEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PF-APNV-VIWGSLMAACRVHGEIELAEFAAKQ 544 (722)
Q Consensus 468 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~ 544 (722)
..|.+.|..+--+ .+..|..-|- +...+.-.|++..+...++.. .+ ..+. .+-. ++..-.++|.+.+-.+...-
T Consensus 490 p~a~~~y~tLdIK-~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~e-yI~~AYr~g~ySkI~em~~f 566 (932)
T KOG2053|consen 490 PDAYELYKTLDIK-NIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPE-YIALAYRRGAYSKIPEMLAF 566 (932)
T ss_pred hhHHHHHHhcchH-HhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHH-HHHHHHHcCchhhhHHHHHH
Confidence 8888888887654 4555443322 223444566666666665543 10 1111 1111 22233456666655554322
Q ss_pred HHccCCCC----CchHHHHHHHhhhCCCcchHHHHHHHHH
Q 004938 545 LLQLDPDH----DGALVLLSNIYAKDKRWQDVGELRKSMK 580 (722)
Q Consensus 545 ~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 580 (722)
=-.+.-.. ..+-..+.......++.++-.+.+..|+
T Consensus 567 r~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 567 RDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 11121111 1122355666677788888777777776
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.9e-05 Score=69.48 Aligned_cols=95 Identities=21% Similarity=0.170 Sum_probs=68.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhh
Q 004938 488 EHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAK 565 (722)
Q Consensus 488 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 565 (722)
.....++..+...|++++|.+.++.. ...| +...|..+...+...|++++|...++++++.+|+++..+..++.+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 44555666666777777777777665 3334 456677777777777888888888888888888877777788888888
Q ss_pred CCCcchHHHHHHHHHhC
Q 004938 566 DKRWQDVGELRKSMKER 582 (722)
Q Consensus 566 ~g~~~~a~~~~~~m~~~ 582 (722)
.|++++|.+.++...+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 88888888887777664
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.6e-06 Score=53.46 Aligned_cols=35 Identities=40% Similarity=0.725 Sum_probs=32.1
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH
Q 004938 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218 (722)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 218 (722)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00011 Score=75.61 Aligned_cols=123 Identities=17% Similarity=0.087 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 004938 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACR 530 (722)
Q Consensus 453 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 530 (722)
...+++..+...+.+++|.++|+++.+. +++....|+..+...++-.+|.+++.+. ...| +...+.....-|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~-----~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER-----DPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc-----CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3455667777888999999999998873 2345667888888888888999998887 3334 5667776777788
Q ss_pred HcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHH
Q 004938 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580 (722)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 580 (722)
..++++.|+.+++++.++.|++..+|..|+.+|...|++++|.-.++.+-
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999988774
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00057 Score=69.67 Aligned_cols=140 Identities=14% Similarity=0.068 Sum_probs=108.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcC
Q 004938 423 INAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL-YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRAN 501 (722)
Q Consensus 423 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 501 (722)
.-.+...|++++|+..++.++.. .||...|..+. ..+...++.++|.+.++.+.. ..|......-.+.++|.+.|
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcC
Confidence 33455678889999999998874 67766655544 577888999999999998886 23333566777888999999
Q ss_pred CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHH
Q 004938 502 LLREALELVETM--PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSM 579 (722)
Q Consensus 502 ~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 579 (722)
+..+|..++++. ..+.|+..|..|..+|...|+..++.... +..|.-.|+|++|....+..
T Consensus 389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHHHHHHH
Confidence 999999998887 33346789999999999999888776654 44577889999999999888
Q ss_pred HhCC
Q 004938 580 KERG 583 (722)
Q Consensus 580 ~~~g 583 (722)
+++.
T Consensus 452 ~~~~ 455 (484)
T COG4783 452 SQQV 455 (484)
T ss_pred HHhc
Confidence 8764
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.06 E-value=6.3e-06 Score=52.80 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=32.2
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCc
Q 004938 83 RVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDR 117 (722)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 117 (722)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00054 Score=63.68 Aligned_cols=182 Identities=13% Similarity=0.202 Sum_probs=80.4
Q ss_pred CCchHHHHHHHHHHH---cC-CCCChh-HHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh---HHHHHHHHHHHHcCCHH
Q 004938 364 GVLDQAQRIHLYIDK---NA-FGGDLR-VNNAIIDMYAKCGSLESAREVFERMRR--RNV---ISWTSMINAFAIHGDAR 433 (722)
Q Consensus 364 g~~~~a~~i~~~~~~---~~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~li~~~~~~g~~~ 433 (722)
.+.++..+++..++. .| ..++.. +|..++-+...+|+.+.|...++.+.. |+. .-..+| -+-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchh
Confidence 345555555555542 22 333322 222333344445555555555555432 111 111111 122345555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 004938 434 NALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513 (722)
Q Consensus 434 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 513 (722)
+|+++++.+++.. +.|.+++..-+...-..|.--+|++-+....+ .+..|.+.|.-+.+.|...|++++|.-.++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 5555555555542 22334444444444444444455555544444 34445555555555555555555555555554
Q ss_pred -CCCC-CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHccCC
Q 004938 514 -PFAP-NVVIWGSLMAACRVHG---EIELAEFAAKQLLQLDP 550 (722)
Q Consensus 514 -~~~p-~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p 550 (722)
-+.| +...+..+...+...| +++.+...|.+++++.|
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 2223 2333333433332222 44445555555555555
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0038 Score=58.65 Aligned_cols=117 Identities=14% Similarity=0.087 Sum_probs=56.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cC
Q 004938 390 AIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH----AG 465 (722)
Q Consensus 390 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g 465 (722)
.-...|++.|++++|.+.......-..... =...+.+..+.+-|.+.+++|.+- -+..|.+.|..++.+ .+
T Consensus 113 ~aa~i~~~~~~~deAl~~~~~~~~lE~~Al--~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 113 LAAIIYMHDGDFDEALKALHLGENLEAAAL--NVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGE 187 (299)
T ss_pred HhhHHhhcCCChHHHHHHHhccchHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccch
Confidence 334456667777777776666322222222 223344555666667767766651 234455545444432 23
Q ss_pred CHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 004938 466 LVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513 (722)
Q Consensus 466 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 513 (722)
.+.+|.-+|++|.. ..+|+..+.+.+.-+....|++++|..++++.
T Consensus 188 k~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 188 KIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred hhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 34555555555544 23344444444444444444444444444443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00017 Score=63.44 Aligned_cols=114 Identities=13% Similarity=0.108 Sum_probs=88.1
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 004938 438 FFNKMKDESIDPNG-VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PF 515 (722)
Q Consensus 438 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 515 (722)
.|++... ..|+. .....+...+...|++++|.+.|+.+.. ..+.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455554 45544 3455666777888899999999888876 34556778888888898999999999888877 44
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCch
Q 004938 516 AP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGA 555 (722)
Q Consensus 516 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 555 (722)
.| +...|..+...+...|+.++|...++++++++|++...
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 45 46777778888999999999999999999999988653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00022 Score=73.44 Aligned_cols=125 Identities=13% Similarity=0.187 Sum_probs=97.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCH
Q 004938 389 NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDP-NGVTFIGVLYACSHAGLV 467 (722)
Q Consensus 389 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~ 467 (722)
.+|+..+...++++.|.++|+++.+.++..+..++..+...++..+|++++++.+.. .| +...+..-...|...+++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCH
Confidence 455666667788999999999988877777777888888888888999999888864 44 344455555667888899
Q ss_pred HHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 004938 468 DEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP 517 (722)
Q Consensus 468 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 517 (722)
+.|..+.+++.+ -.|.+..+|..|+..|.+.|++++|+..++.+|.-|
T Consensus 251 ~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 251 ELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 999999998886 445566788999999999999999999888887544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0019 Score=72.80 Aligned_cols=23 Identities=13% Similarity=-0.036 Sum_probs=12.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHh
Q 004938 457 VLYACSHAGLVDEGREIFASMTN 479 (722)
Q Consensus 457 ll~a~~~~g~~~~a~~~~~~~~~ 479 (722)
+-..|....+++++..+++.+.+
T Consensus 229 l~~~y~~~~~~~~~i~iLK~iL~ 251 (906)
T PRK14720 229 LYEPYKALEDWDEVIYILKKILE 251 (906)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHh
Confidence 33445555556666666666554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.5e-05 Score=50.62 Aligned_cols=34 Identities=29% Similarity=0.534 Sum_probs=29.1
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 004938 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP 216 (722)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 216 (722)
+.+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578888888888888888889998888888877
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=8.6e-05 Score=70.85 Aligned_cols=104 Identities=20% Similarity=0.177 Sum_probs=85.4
Q ss_pred HHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHH
Q 004938 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPNV-VIWGSLMAACRVHGEIEL 537 (722)
Q Consensus 460 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~ 537 (722)
-..+.+++++|+..|..+++ -.|.|...|..-..+|.+.|.++.|.+-.+.. .+.|.. .+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 35677888888888888886 45567777888888999999999998888776 677764 699999999999999999
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHhhh
Q 004938 538 AEFAAKQLLQLDPDHDGALVLLSNIYAK 565 (722)
Q Consensus 538 a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 565 (722)
|++.|+++++++|++..+...|..+-.+
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQK 195 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence 9999999999999998666666544333
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.7e-05 Score=50.37 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=30.3
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 004938 82 SRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI 115 (722)
Q Consensus 82 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 115 (722)
+.+||.+|.+|++.|+++.|+++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3589999999999999999999999999998887
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0007 Score=62.93 Aligned_cols=183 Identities=14% Similarity=0.139 Sum_probs=143.1
Q ss_pred cCCHHHHHHHHHhcCC--------CCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCH
Q 004938 398 CGSLESAREVFERMRR--------RNV-ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV-LYACSHAGLV 467 (722)
Q Consensus 398 ~g~~~~A~~~~~~~~~--------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~ 467 (722)
..+.++..+++.++.. ++. ..|..++-+....|+.+.|...++++... + |.+.-...+ ..-+...|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 4678899998888753 233 24555566677889999999999999886 3 665432222 2234567999
Q ss_pred HHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004938 468 DEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM--PFAPNVVIWGSLMAACRVHGEIELAEFAAKQL 545 (722)
Q Consensus 468 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 545 (722)
++|.++++.+.+ ..|.|..+|---+.+.-..|+--+|++-+.+. .+..|...|.-|...|...|++++|...++++
T Consensus 103 ~~A~e~y~~lL~--ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLE--DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhc--cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 999999999998 44667778877777777888888888877766 56679999999999999999999999999999
Q ss_pred HccCCCCCchHHHHHHHhhhCC---CcchHHHHHHHHHhCCC
Q 004938 546 LQLDPDHDGALVLLSNIYAKDK---RWQDVGELRKSMKERGI 584 (722)
Q Consensus 546 ~~~~p~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~g~ 584 (722)
+-..|-++-.+..+++++.-.| +.+-|.+++.+..+...
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 9999999999999999987766 55567777777766543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00021 Score=57.79 Aligned_cols=92 Identities=26% Similarity=0.239 Sum_probs=71.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCC
Q 004938 490 YGCMVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDK 567 (722)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 567 (722)
+..+...+...|++++|...+++. ...|+ ...|..+...+...|++++|...++++++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455666777788888888888776 33443 4667777777888888888888888888888888778888888888888
Q ss_pred CcchHHHHHHHHHh
Q 004938 568 RWQDVGELRKSMKE 581 (722)
Q Consensus 568 ~~~~a~~~~~~m~~ 581 (722)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888888877654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.75 E-value=6.8e-05 Score=56.91 Aligned_cols=64 Identities=22% Similarity=0.195 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCC-CcchHHHHHHHHHh
Q 004938 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDK-RWQDVGELRKSMKE 581 (722)
Q Consensus 518 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 581 (722)
++.+|..+...+...|++++|+..|+++++++|+++..+..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999 79999999988765
|
... |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0045 Score=58.18 Aligned_cols=120 Identities=15% Similarity=0.144 Sum_probs=57.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCC-cchHHHHHHHHHh----cCCc
Q 004938 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD-LICWSAMISGYAE----NNHP 331 (722)
Q Consensus 257 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~~----~g~~ 331 (722)
..-...|.+.|++++|++..... .+......-+..+.+..+++-|.+.+++|.+-| ..+.+.|..++.+ .+..
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLG--ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhh
Confidence 33344556666666666665441 122222222333444555555555555554442 2233333333322 2345
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHc
Q 004938 332 QEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKN 379 (722)
Q Consensus 332 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~ 379 (722)
.+|.-+|++|-+. ..|+..+.+....++...|++++|..+++.++..
T Consensus 190 qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 190 QDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 5555555555442 3455555555555555555555555555555443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.72 E-value=4.5e-05 Score=47.18 Aligned_cols=31 Identities=35% Similarity=0.800 Sum_probs=25.1
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 004938 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNV 214 (722)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 214 (722)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00035 Score=59.70 Aligned_cols=99 Identities=12% Similarity=0.084 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 004938 454 FIGVLYACSHAGLVDEGREIFASMTNEYNIPP-KYEHYGCMVDLFGRANLLREALELVETM-PFAPN----VVIWGSLMA 527 (722)
Q Consensus 454 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~ 527 (722)
+..+...+...|++++|...|..+...+.-.+ ....+..+...+.+.|++++|.+.++++ ...|+ ..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34444445555555555555555544211100 0123333444444555555555544443 11121 233444444
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCC
Q 004938 528 ACRVHGEIELAEFAAKQLLQLDPDH 552 (722)
Q Consensus 528 ~~~~~g~~~~a~~~~~~~~~~~p~~ 552 (722)
.+...|+.+.|...++++++..|++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCC
Confidence 4444444555555555544444444
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00048 Score=58.81 Aligned_cols=95 Identities=16% Similarity=0.025 Sum_probs=62.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---CchHHHHH
Q 004938 489 HYGCMVDLFGRANLLREALELVETM-PFAPN----VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH---DGALVLLS 560 (722)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 560 (722)
.+..++..+.+.|++++|.+.++++ ...|+ ...+..+...+...|+++.|...+++++...|++ +..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455666667777777777777666 22232 2345556666777777777777777777766664 34566677
Q ss_pred HHhhhCCCcchHHHHHHHHHhCC
Q 004938 561 NIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 561 ~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
.++.+.|++++|.+.++.+.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 77777777777777777776654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0008 Score=59.86 Aligned_cols=124 Identities=15% Similarity=0.143 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC--cchHH
Q 004938 418 SWTSMINAFAIHGDARNALIFFNKMKDESIDPNG----VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK--YEHYG 491 (722)
Q Consensus 418 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~ 491 (722)
.|..++..+ ..++...+...++++... .|+. .....+...+...|++++|...|+.+... ...|. .....
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l 89 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARL 89 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHH
Confidence 444455444 355666666666666553 2222 12233334555566666666666666552 11111 11222
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004938 492 CMVDLFGRANLLREALELVETMPFA-PNVVIWGSLMAACRVHGEIELAEFAAKQL 545 (722)
Q Consensus 492 ~li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 545 (722)
.|...+...|++++|+..++..+.. .....+..+...+...|+.++|...|+++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 3444555555555555555544211 12334444444555555555555555543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.70 E-value=3.6e-05 Score=61.13 Aligned_cols=78 Identities=19% Similarity=0.222 Sum_probs=53.6
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHH
Q 004938 500 ANLLREALELVETM-PFAP---NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGEL 575 (722)
Q Consensus 500 ~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 575 (722)
.|++++|+.+++++ ...| +...|..+...+.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45666677666666 2222 345566677778888888888888877 666776666677778888888888888887
Q ss_pred HHH
Q 004938 576 RKS 578 (722)
Q Consensus 576 ~~~ 578 (722)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0013 Score=58.58 Aligned_cols=114 Identities=16% Similarity=0.100 Sum_probs=59.3
Q ss_pred cCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHH
Q 004938 464 AGLVDEGREIFASMTNEYNIPP-KYEHYGCMVDLFGRANLLREALELVETM-PFAPNV----VIWGSLMAACRVHGEIEL 537 (722)
Q Consensus 464 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~ 537 (722)
.++...+...++.+.++++-.+ .....-.+...+...|++++|...|+.. ...||. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5556666666666665322211 1222334455666666666666666665 112332 233344555566666666
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHH
Q 004938 538 AEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKS 578 (722)
Q Consensus 538 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 578 (722)
|+..++.. .-.+-.+..+..++++|...|++++|...|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666442 22222334455666666666666666666654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0019 Score=69.92 Aligned_cols=140 Identities=11% Similarity=0.028 Sum_probs=78.7
Q ss_pred CCChHHHHHHHHHHHH--cC---CHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhc--------CCHHHHHHHHHHhH
Q 004938 413 RRNVISWTSMINAFAI--HG---DARNALIFFNKMKDESIDPNGV-TFIGVLYACSHA--------GLVDEGREIFASMT 478 (722)
Q Consensus 413 ~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~--------g~~~~a~~~~~~~~ 478 (722)
..|...|...+.+... .+ +...|+.+|++.++ ..|+.. .+..+..++... .++..+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3566777777776443 22 26688899999888 578753 343333222111 11223333333322
Q ss_pred hhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCc
Q 004938 479 NEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554 (722)
Q Consensus 479 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 554 (722)
.....+.+...|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|.+.+++++.++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 21112233455555555555566666666666666 45566666666666666666666666666666666666653
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.65 E-value=5.5e-05 Score=46.75 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=27.3
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 004938 83 RVSNKFIRAISWSHRPKHALKVFLKMLNEGL 113 (722)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 113 (722)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999988774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.11 Score=52.58 Aligned_cols=122 Identities=15% Similarity=0.185 Sum_probs=89.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 004938 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLV 467 (722)
Q Consensus 388 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 467 (722)
.+..+.-+...|+...|.++..+..-|+-..|-..+.+|+..+++++-.++... +-.++.|..++.+|...|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455667788899999998888889999999999999999999877765432 22347788889999999999
Q ss_pred HHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004938 468 DEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAAC 529 (722)
Q Consensus 468 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~ 529 (722)
.+|..+...+ .+..-+.+|.++|++.+|.+.--+.+ |...+..+..-|
T Consensus 254 ~eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~ 301 (319)
T PF04840_consen 254 KEASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence 9988887652 12567888999999999887765543 444444444333
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00083 Score=69.54 Aligned_cols=102 Identities=14% Similarity=0.063 Sum_probs=68.4
Q ss_pred HHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 004938 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIEL 537 (722)
Q Consensus 460 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 537 (722)
.+...|++++|++.|+.+++ ..+.+...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 34455666666666666665 23334555666666667777777777777666 4445 45667777777888888888
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHh
Q 004938 538 AEFAAKQLLQLDPDHDGALVLLSNIY 563 (722)
Q Consensus 538 a~~~~~~~~~~~p~~~~~~~~l~~~~ 563 (722)
|+..++++++++|+++.....+..+.
T Consensus 89 A~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 88888888888888877666655543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00017 Score=53.86 Aligned_cols=58 Identities=28% Similarity=0.284 Sum_probs=43.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 525 LMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 525 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
+...+...|++++|+..++++++.+|+++..+..++.++...|++++|...++.+.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455677788888888888888888887778888888888888888888887777653
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00042 Score=71.71 Aligned_cols=90 Identities=16% Similarity=0.101 Sum_probs=80.9
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcch
Q 004938 494 VDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQD 571 (722)
Q Consensus 494 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 571 (722)
...+...|++++|+++++++ ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|++++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 45667889999999999998 5555 467888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 004938 572 VGELRKSMKERG 583 (722)
Q Consensus 572 a~~~~~~m~~~g 583 (722)
|...++...+..
T Consensus 89 A~~~~~~al~l~ 100 (356)
T PLN03088 89 AKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHhC
Confidence 999999987754
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.13 Score=52.12 Aligned_cols=137 Identities=14% Similarity=0.118 Sum_probs=99.1
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHH
Q 004938 414 RNVISWTSMINAFAIHGDARNALIFFNKMKDES-IDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC 492 (722)
Q Consensus 414 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 492 (722)
+-...|-..++.-.+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+...|..+|+.-... ++.+...-..
T Consensus 395 k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~k 471 (660)
T COG5107 395 KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEK 471 (660)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHH
Confidence 445677777777777777888888888888877 5566667777776444 57777888888876653 3333333355
Q ss_pred HHHHHHhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCC
Q 004938 493 MVDLFGRANLLREALELVETM--PFAPN--VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD 553 (722)
Q Consensus 493 li~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 553 (722)
.++-+.+.++-+.|..+|+.. .+..+ -.+|..++.--...|++..+..+-+++.++-|+..
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen 536 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQEN 536 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHh
Confidence 667777888888888888855 22223 46788888888888998888888888888888763
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.001 Score=53.56 Aligned_cols=61 Identities=30% Similarity=0.278 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004938 490 YGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDP 550 (722)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 550 (722)
+..+...+...|++++|.+.+++. ...| +..+|..+...+...|+.+.|...++++++..|
T Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 37 YYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 333444444444444444444443 1122 224555555666666666666666666666555
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00071 Score=62.26 Aligned_cols=80 Identities=24% Similarity=0.128 Sum_probs=56.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHh
Q 004938 489 HYGCMVDLFGRANLLREALELVETM-PFAPN----VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIY 563 (722)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 563 (722)
.+..+...|.+.|++++|...+++. ...|+ ...|..+...+...|++++|...++++++..|++...+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3445555555566666666666554 21221 356777777888888888888888888888888888888888888
Q ss_pred hhCCC
Q 004938 564 AKDKR 568 (722)
Q Consensus 564 ~~~g~ 568 (722)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 77776
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00061 Score=62.43 Aligned_cols=93 Identities=15% Similarity=-0.094 Sum_probs=72.3
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHH
Q 004938 487 YEHYGCMVDLFGRANLLREALELVETM-PFAPN----VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSN 561 (722)
Q Consensus 487 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 561 (722)
...|..++..+...|++++|+..+++. ...|+ ..+|..+...+...|++++|+..+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 345566666777778888888887776 23232 3578888889999999999999999999999998888888888
Q ss_pred Hhh-------hCCCcchHHHHHHHH
Q 004938 562 IYA-------KDKRWQDVGELRKSM 579 (722)
Q Consensus 562 ~~~-------~~g~~~~a~~~~~~m 579 (722)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 778888666666544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0028 Score=63.20 Aligned_cols=143 Identities=17% Similarity=0.258 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 004938 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA-CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495 (722)
Q Consensus 417 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 495 (722)
.+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467888888888888999999999987532 2233445544444 33356777799999999984 5667788999999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHh
Q 004938 496 LFGRANLLREALELVETM-PFAPNV----VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIY 563 (722)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 563 (722)
.+.+.|+.+.|..+|++. ..-|.. ..|...+.--.+.|+.+....+.+++.+.-|++. ....+.+-|
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~-~~~~f~~ry 150 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN-SLELFSDRY 150 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS--HHHHHHCCT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh-HHHHHHHHh
Confidence 999999999999999987 323333 5999999999999999999999999999988854 333344433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00034 Score=66.91 Aligned_cols=89 Identities=22% Similarity=0.189 Sum_probs=80.0
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcch
Q 004938 494 VDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQD 571 (722)
Q Consensus 494 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 571 (722)
.+-+.+.+++++|+..|.++ .+.| |++.|..-..+|.+.|.++.|.+-.+.++.++|....+|..|+.+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 34567789999999999988 7777 567788888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 004938 572 VGELRKSMKER 582 (722)
Q Consensus 572 a~~~~~~m~~~ 582 (722)
|.+.|++..+.
T Consensus 168 A~~aykKaLel 178 (304)
T KOG0553|consen 168 AIEAYKKALEL 178 (304)
T ss_pred HHHHHHhhhcc
Confidence 99999887663
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0013 Score=63.37 Aligned_cols=106 Identities=18% Similarity=0.097 Sum_probs=89.5
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH---cCCHHHHHHHHHHHHccCCCCCchH
Q 004938 482 NIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRV---HGEIELAEFAAKQLLQLDPDHDGAL 556 (722)
Q Consensus 482 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~ 556 (722)
.-|-|.+.|-.|...|.+.|+++.|..-|.+. .+.| +...+..+..++.. .....++..++++++.++|.+..+.
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 34668899999999999999999999999988 4444 56677777777543 2356789999999999999999999
Q ss_pred HHHHHHhhhCCCcchHHHHHHHHHhCCCccC
Q 004938 557 VLLSNIYAKDKRWQDVGELRKSMKERGILKE 587 (722)
Q Consensus 557 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 587 (722)
..|+..+...|++.+|...++.|.+.....+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999998765433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0041 Score=57.20 Aligned_cols=131 Identities=14% Similarity=0.112 Sum_probs=84.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHH
Q 004938 415 NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN--GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC 492 (722)
Q Consensus 415 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 492 (722)
....+..+...+...|++++|+..|++.......|+ ...+..+...+.+.|++++|...+.+..+ ..+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHH
Confidence 345667777777788888888888888776432222 24566777777788888888888877775 22334455566
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCC
Q 004938 493 MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKR 568 (722)
Q Consensus 493 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 568 (722)
+..+|...|+...+..-++.. ...+++|.+.++++++.+|++ +..+...+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 666666666655544332221 112678889999999999986 4445555544443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0033 Score=62.68 Aligned_cols=153 Identities=15% Similarity=0.080 Sum_probs=109.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHhHhhcCCCCCcch-------------
Q 004938 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY--ACSHAGLVDEGREIFASMTNEYNIPPKYEH------------- 489 (722)
Q Consensus 425 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------------- 489 (722)
++.-.|++++|...--...+. .++. .+..+++ ++...++.+.|...|++..+ ..|+...
T Consensus 178 cl~~~~~~~~a~~ea~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhcccchhHHHHHHHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHH
Confidence 455677888887766665552 2222 1222222 34456777888888877653 3333221
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHh
Q 004938 490 YGCMVDLFGRANLLREALELVETM-PFAP-----NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIY 563 (722)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 563 (722)
+..-.+...+.|++.+|.+.+.+. .+.| ++..|.....+..+.|+.++|+.-.+.+++++|....+|..-++.+
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 112234457889999999999887 5444 4556666667778899999999999999999999988999999999
Q ss_pred hhCCCcchHHHHHHHHHhCC
Q 004938 564 AKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 564 ~~~g~~~~a~~~~~~m~~~g 583 (722)
...++|++|.+-+++..+..
T Consensus 332 l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999887643
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00081 Score=66.60 Aligned_cols=257 Identities=12% Similarity=0.022 Sum_probs=149.1
Q ss_pred HHHhcCCchHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHccCCchHHHHHHHHHHH----cCCC-CChhHHHHHHHH
Q 004938 324 GYAENNHPQEALKLFNEMQVCGMKPDK----VTMLSVISACAHLGVLDQAQRIHLYIDK----NAFG-GDLRVNNAIIDM 394 (722)
Q Consensus 324 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~i~~~~~~----~~~~-~~~~~~~~li~~ 394 (722)
-+++.|+....+.+|+..++.|. -|. ..|..+-++|.-.+++++|.++|..=+. .|-. ........|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 35667777777777777776652 232 2344455566666677777776543211 0100 011112223334
Q ss_pred HHhcCCHHHHHHHHHhcCC---------CChHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHH-
Q 004938 395 YAKCGSLESAREVFERMRR---------RNVISWTSMINAFAIHGD--------------------ARNALIFFNKMKD- 444 (722)
Q Consensus 395 ~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~- 444 (722)
+--.|.+++|.-.-.+-.. -....+-.+...|...|+ .+.|.++|.+-.+
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 4445666665543322111 112233344445543332 2334444443221
Q ss_pred ---cCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH---hHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC---
Q 004938 445 ---ESIDP-NGVTFIGVLYACSHAGLVDEGREIFAS---MTNEYNIPPK-YEHYGCMVDLFGRANLLREALELVETM--- 513 (722)
Q Consensus 445 ---~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~---~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~--- 513 (722)
.|-.. -...|..|.+.|.-.|+++.|+..++. +.+++|.... ...+..+.+.+.-.|+++.|.+.++..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 11111 123466666666777899998877654 2334554432 456788888999999999999888764
Q ss_pred ----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc----C--CCCCchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 514 ----PFA-PNVVIWGSLMAACRVHGEIELAEFAAKQLLQL----D--PDHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 514 ----~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
+-+ -..-+..+|.+.|....++++|+..+.+-+.+ + .....+++.|+++|...|..+.|....+.-.+
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 211 13446678888888888999999888776543 2 23445788999999999999999877766543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00066 Score=50.68 Aligned_cols=61 Identities=21% Similarity=0.224 Sum_probs=50.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCC
Q 004938 493 MVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD 553 (722)
Q Consensus 493 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 553 (722)
+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++.+|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778889999999999888 55564 57888899999999999999999999999999874
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.32 Score=52.17 Aligned_cols=321 Identities=16% Similarity=0.166 Sum_probs=141.7
Q ss_pred CCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC----HhHHHHHHHHHHccCChHHHHHHH
Q 004938 166 GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD----EMVLSKILSACSRAGNLSYGEAVH 241 (722)
Q Consensus 166 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~ 241 (722)
|++++|.+++-+|.++|.. |..+.+.|++-.+.++++.= |-..| ...++.+-..++....++.|.+.+
T Consensus 748 g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred cchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777666542 45555566665555554321 11111 224444444555555555555544
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHH
Q 004938 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAM 321 (722)
Q Consensus 242 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l 321 (722)
..--. ....+.+|.+..++++-+.+-+.++ .+......+..++.+.|--++|.+.|-+-..+. +-
T Consensus 820 ~~~~~---------~e~~~ecly~le~f~~LE~la~~Lp-e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aA 884 (1189)
T KOG2041|consen 820 SYCGD---------TENQIECLYRLELFGELEVLARTLP-EDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AA 884 (1189)
T ss_pred Hhccc---------hHhHHHHHHHHHhhhhHHHHHHhcC-cccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HH
Confidence 33211 1123444444444444433333222 233344455556666666666655554443332 23
Q ss_pred HHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 004938 322 ISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSL 401 (722)
Q Consensus 322 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 401 (722)
+..|...++|.+|.++-++.. -|...|+ +. ..|.++++.. + .---|..+-+.|+.
T Consensus 885 v~tCv~LnQW~~avelaq~~~----l~qv~tl---ia--------k~aaqll~~~---~-------~~eaIe~~Rka~~~ 939 (1189)
T KOG2041|consen 885 VHTCVELNQWGEAVELAQRFQ----LPQVQTL---IA--------KQAAQLLADA---N-------HMEAIEKDRKAGRH 939 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHhcc----chhHHHH---HH--------HHHHHHHhhc---c-------hHHHHHHhhhcccc
Confidence 344555566666665554432 1222221 11 0111111110 0 01234556677776
Q ss_pred HHHHHHHHhcCCCCh---HHHHHHHHHH----HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004938 402 ESAREVFERMRRRNV---ISWTSMINAF----AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIF 474 (722)
Q Consensus 402 ~~A~~~~~~~~~~~~---~~~~~li~~~----~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 474 (722)
-+|-+++.+|.++.. ..|..+=..| .-..+..++++-.++....|...+... +...|...++-++.
T Consensus 940 ~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~ 1012 (1189)
T KOG2041|consen 940 LDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRIL 1012 (1189)
T ss_pred hhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHH
Confidence 666666666653111 1111111111 111223344444444444443322211 22334444444554
Q ss_pred HHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004938 475 ASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM----PFAPNVVIWGSLMAACRVHGEIELAEFAAKQL 545 (722)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 545 (722)
+...+ | ....++-.|..--...|..+.|+..--.+ .+-|-..+|..|.-+-+....+...-++|-++
T Consensus 1013 ~n~Wr--g--AEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1013 ENTWR--G--AEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKL 1083 (1189)
T ss_pred Hhhhh--h--HHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 43332 1 22345555666666778888887654443 23344455554444333333333333333333
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0027 Score=55.81 Aligned_cols=88 Identities=13% Similarity=0.022 Sum_probs=75.1
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcch
Q 004938 494 VDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQD 571 (722)
Q Consensus 494 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 571 (722)
.--+...|++++|..+|+-+ -..| +..-|..|...|...+++++|...|..+..++++++..+...+..|...|+.+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 33445688888888888776 2223 556788888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 004938 572 VGELRKSMKE 581 (722)
Q Consensus 572 a~~~~~~m~~ 581 (722)
|...|....+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999998876
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0096 Score=54.47 Aligned_cols=110 Identities=15% Similarity=0.054 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHH
Q 004938 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPN--GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCM 493 (722)
Q Consensus 416 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 493 (722)
...|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|...++..... .+.....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 34666777777778888888888888776422221 236677777778888888888888777652 22233445555
Q ss_pred HHHHHhcC-------CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 004938 494 VDLFGRAN-------LLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552 (722)
Q Consensus 494 i~~~~~~g-------~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 552 (722)
...|...| ++++|+. .+++|...++++++.+|++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~-------------------------~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEA-------------------------WFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHH-------------------------HHHHHHHHHHHHHHhCccc
Confidence 55554322 2222221 2456777888888888865
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.042 Score=57.98 Aligned_cols=156 Identities=15% Similarity=0.143 Sum_probs=87.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHH---------HHHHCCCCCCcccHHHHHHHHHhcCChHHHHHH--HHHHHHhCCCCchh
Q 004938 85 SNKFIRAISWSHRPKHALKVFL---------KMLNEGLTIDRFSFPPILKAIARAEGLLEGMQV--HGLGTKLGFGSDPF 153 (722)
Q Consensus 85 ~~~li~~~~~~g~~~~a~~~~~---------~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~~~ 153 (722)
+.+-+-.|...|.+.+|.++-. .+-.. ..+...++..=++|.+.+++.--+-+ ++.+.+.|-.|+..
T Consensus 559 ~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i 636 (1081)
T KOG1538|consen 559 QSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDL 636 (1081)
T ss_pred ccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH
Confidence 3344445666677666655311 11000 11334455666777777766544433 45667777777766
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCC
Q 004938 154 VQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGN 233 (722)
Q Consensus 154 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 233 (722)
. +...++-.|++.+|.++|.+ +|.-..|+++|..|+-- -...-+...|+
T Consensus 637 L---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF----------D~aQE~~~~g~ 685 (1081)
T KOG1538|consen 637 L---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF----------DYAQEFLGSGD 685 (1081)
T ss_pred H---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH----------HHHHHHhhcCC
Confidence 5 44566778999999998864 67778888888877632 12334455566
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 004938 234 LSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275 (722)
Q Consensus 234 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 275 (722)
.++-+.+...-.+- ..|+.--.+...++...|+.++|..+
T Consensus 686 ~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i 725 (1081)
T KOG1538|consen 686 PKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEI 725 (1081)
T ss_pred hHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhh
Confidence 55544444332211 11111112445666677777777666
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.084 Score=52.88 Aligned_cols=100 Identities=14% Similarity=0.245 Sum_probs=49.4
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCC-----hh-hHHHHHHHHHccCCchHHHHHHHHHHHc--CCCCC--hh
Q 004938 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPD-----KV-TMLSVISACAHLGVLDQAQRIHLYIDKN--AFGGD--LR 386 (722)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~-t~~~ll~~~~~~g~~~~a~~i~~~~~~~--~~~~~--~~ 386 (722)
.+..+...+.+.|++++|+++|++....-...+ .. .|...+-++...|++..|...++..... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 345566677778888888888877765432211 11 1222233444556666666666665543 22222 23
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHhcCCCCh
Q 004938 387 VNNAIIDMYAK--CGSLESAREVFERMRRRNV 416 (722)
Q Consensus 387 ~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~ 416 (722)
+...|++++-. ...+++|..-|+.+.+-|.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 34445555543 2345556666666555443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00076 Score=51.73 Aligned_cols=58 Identities=17% Similarity=0.089 Sum_probs=48.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 526 MAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 526 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
...+.+.+++++|..+++++++++|+++..+...+.+|...|++++|.+.++...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3467788888888888888888888888888888888888888888888888887644
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00035 Score=52.75 Aligned_cols=53 Identities=25% Similarity=0.366 Sum_probs=39.6
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 530 RVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 530 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
...|++++|+..++++++.+|++......++.+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35677788888888888888887777778888888888888888777766553
|
... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00021 Score=44.98 Aligned_cols=34 Identities=21% Similarity=0.416 Sum_probs=31.3
Q ss_pred HHHHHHccCCCCCchHHHHHHHhhhCCCcchHHH
Q 004938 541 AAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGE 574 (722)
Q Consensus 541 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 574 (722)
+|+++++++|+++.+|..|+.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999863
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.22 Score=49.84 Aligned_cols=121 Identities=12% Similarity=0.261 Sum_probs=67.1
Q ss_pred HHHhc-CCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----CHH-HHHHH
Q 004938 394 MYAKC-GSLESAREVFERMRR-----RN----VISWTSMINAFAIHGDARNALIFFNKMKDESIDP-----NGV-TFIGV 457 (722)
Q Consensus 394 ~~~~~-g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~-t~~~l 457 (722)
.|.+. |++++|.+.|++..+ .. ...+..+...+.+.|++++|+++|++....-... +.. .|...
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 34444 555555555554432 11 1244556677888889999999998877643221 111 23344
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhhc-CCCCC--cchHHHHHHHHHh--cCCHHHHHHHHHhCC
Q 004938 458 LYACSHAGLVDEGREIFASMTNEY-NIPPK--YEHYGCMVDLFGR--ANLLREALELVETMP 514 (722)
Q Consensus 458 l~a~~~~g~~~~a~~~~~~~~~~~-~~~~~--~~~~~~li~~~~~--~g~~~~A~~~~~~~~ 514 (722)
+-++...|++..|.+.|+...... ++..+ ......|++++-. ...+++|..-|+.+.
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 446667788888888888876421 22222 2334455566543 456777777777773
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.38 Score=48.17 Aligned_cols=243 Identities=17% Similarity=0.158 Sum_probs=161.4
Q ss_pred HhcCCchHHHHHHHHHHhCCCCCChh--hHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 004938 326 AENNHPQEALKLFNEMQVCGMKPDKV--TMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLES 403 (722)
Q Consensus 326 ~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 403 (722)
.-.|+++.|.+-|+.|... |... -+..+.-.-.+.|+.+.|++.-+..-..- +.-...+.+.++..+..|+|+.
T Consensus 131 l~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred HhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHH
Confidence 3458888888888888752 2221 12233333457788888888777665542 2335677888999999999999
Q ss_pred HHHHHHhcC-----CCChH--HHHHHHHHHH---HcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHH
Q 004938 404 AREVFERMR-----RRNVI--SWTSMINAFA---IHGDARNALIFFNKMKDESIDPNGVT-FIGVLYACSHAGLVDEGRE 472 (722)
Q Consensus 404 A~~~~~~~~-----~~~~~--~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~ 472 (722)
|+++.+.-. ++++. .-..|+.+-. -..+...|...-.+..+ +.||.+. -..-..++.+.|++.++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhh
Confidence 999998654 34442 2223333221 23345566665555554 6888653 3445578899999999999
Q ss_pred HHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004938 473 IFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM----PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQ 547 (722)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 547 (722)
+++.+-+ ..|.+..+... .+.|.|+ .+++=+++. .++|| ..+..++..+-...|++..|..-.+.+..
T Consensus 285 ilE~aWK---~ePHP~ia~lY--~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r 357 (531)
T COG3898 285 ILETAWK---AEPHPDIALLY--VRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR 357 (531)
T ss_pred HHHHHHh---cCCChHHHHHH--HHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 9999976 34555443322 2345554 333333332 34565 56777788888899999999999999999
Q ss_pred cCCCCCchHHHHHHHhhhC-CCcchHHHHHHHHHhC
Q 004938 548 LDPDHDGALVLLSNIYAKD-KRWQDVGELRKSMKER 582 (722)
Q Consensus 548 ~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 582 (722)
..|.. +.|.+|+++-... |+-.++...+-+....
T Consensus 358 ~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 358 EAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 99976 5888899887554 8888877777665543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0011 Score=52.43 Aligned_cols=81 Identities=15% Similarity=0.241 Sum_probs=42.8
Q ss_pred cCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHH
Q 004938 429 HGDARNALIFFNKMKDESI-DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507 (722)
Q Consensus 429 ~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 507 (722)
.|+++.|+.+|+++.+... .|+...+..+..++.+.|++++|..+++. .+ .+. .+......+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~-~~~-~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK-LDP-SNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT-HHH-CHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC-CCC-CCHHHHHHHHHHHHHhCCHHHHH
Confidence 4667777777777766421 11333444466666777777777777665 21 011 11233334455566666666666
Q ss_pred HHHHh
Q 004938 508 ELVET 512 (722)
Q Consensus 508 ~~~~~ 512 (722)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66553
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.45 Score=48.70 Aligned_cols=71 Identities=21% Similarity=0.275 Sum_probs=45.7
Q ss_pred HHHHhCCCCC----CHHHHHHHHHH--HHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHH
Q 004938 508 ELVETMPFAP----NVVIWGSLMAA--CRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSM 579 (722)
Q Consensus 508 ~~~~~~~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 579 (722)
+++++.++.| +...-|.|.+| ...+|++.++.-...-+.+..| ++.+|..++-......++++|..++..+
T Consensus 445 ~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 445 DFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 3444444443 23344555555 4467777777777777777777 5667777777777777777777777655
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00077 Score=50.86 Aligned_cols=57 Identities=28% Similarity=0.255 Sum_probs=27.4
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchH
Q 004938 500 ANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL 556 (722)
Q Consensus 500 ~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 556 (722)
.|++++|+++++++ ...| +...+..+...|...|++++|...++++...+|+++..+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 44445555555444 2222 344444555555555555555555555555555544333
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.016 Score=62.85 Aligned_cols=135 Identities=12% Similarity=0.054 Sum_probs=99.2
Q ss_pred CCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhc--------CCHHHHHHHHH
Q 004938 446 SIDPNGVTFIGVLYACSHA-----GLVDEGREIFASMTNEYNIPPK-YEHYGCMVDLFGRA--------NLLREALELVE 511 (722)
Q Consensus 446 g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~--------g~~~~A~~~~~ 511 (722)
+...|...|...+.+.... +..++|..+|+++.+ ..|+ ...|..+..+|... ++++++.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3456677888888875543 337789999999986 3454 45566555444322 23445555555
Q ss_pred hC---C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCC
Q 004938 512 TM---P-FAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGI 584 (722)
Q Consensus 512 ~~---~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 584 (722)
+. + ...+...|..+.-.....|++++|...++++++++|+ ...|..++.+|...|+.++|.+.+++......
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 53 1 2335577888877777889999999999999999995 67999999999999999999999999877543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.015 Score=58.11 Aligned_cols=126 Identities=16% Similarity=0.141 Sum_probs=71.4
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHH-HHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 004938 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA-CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395 (722)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 395 (722)
+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..||+...+. ++.+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45566666666666666666666666432 1122233322222 22345555577777766665 455666666777777
Q ss_pred HhcCCHHHHHHHHHhcCC--C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004938 396 AKCGSLESAREVFERMRR--R----NVISWTSMINAFAIHGDARNALIFFNKMKD 444 (722)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 444 (722)
.+.|+.+.|+.+|++... + -...|...+.--.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777776654 1 223666666666666666666666666665
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.069 Score=47.57 Aligned_cols=131 Identities=13% Similarity=0.062 Sum_probs=96.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-C-----CCCCHH
Q 004938 447 IDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-P-----FAPNVV 520 (722)
Q Consensus 447 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-----~~p~~~ 520 (722)
+.|....-..|..+....|+..+|...|++... .-+.-|....-.+..+....+++.+|...+++. . ..||..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 466666667777888888888888888888776 233445666667777777788888888888776 1 234443
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 521 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
..+...+...|..+.|+..|+.++.-.|+. ..-...+..+.++|+.+++..-+..+.+
T Consensus 164 --Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 --LLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred --HHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 346677888999999999999999988864 4556677888899988888766655544
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.01 Score=48.24 Aligned_cols=80 Identities=15% Similarity=0.225 Sum_probs=66.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCCHhHHHHHHHHHHccC--------ChHHHHHHHHHHHHcCCCCCHhHH
Q 004938 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNV-EPDEMVLSKILSACSRAG--------NLSYGEAVHEFIIDNNVALDAHLQ 256 (722)
Q Consensus 186 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~~~~~~~~~g~~~~~~~~ 256 (722)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.++..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456667777999999999999999999 899999999999887653 234567889999999999999999
Q ss_pred HHHHHHHHh
Q 004938 257 STLITMYAN 265 (722)
Q Consensus 257 ~~li~~~~~ 265 (722)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999987765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0087 Score=48.59 Aligned_cols=81 Identities=16% Similarity=0.102 Sum_probs=67.2
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhCCC-CCChhhHHHHHHHHHccC--------CchHHHHHHHHHHHcCCCCChhH
Q 004938 317 CWSAMISGYAENNHPQEALKLFNEMQVCGM-KPDKVTMLSVISACAHLG--------VLDQAQRIHLYIDKNAFGGDLRV 387 (722)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~i~~~~~~~~~~~~~~~ 387 (722)
+-...|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+.++.. ++-....+++.++..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344567777778999999999999999999 999999999999887643 24456778889999899999999
Q ss_pred HHHHHHHHHh
Q 004938 388 NNAIIDMYAK 397 (722)
Q Consensus 388 ~~~li~~~~~ 397 (722)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9998887765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0013 Score=49.70 Aligned_cols=64 Identities=25% Similarity=0.254 Sum_probs=51.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcC-CHHHHHHHHHHHHccCC
Q 004938 487 YEHYGCMVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAACRVHG-EIELAEFAAKQLLQLDP 550 (722)
Q Consensus 487 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 550 (722)
...|..+...+.+.|++++|+..|++. ...|+ ...|..+..++...| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456777777888888888888888776 44564 568888888899999 79999999999999888
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.094 Score=46.72 Aligned_cols=97 Identities=15% Similarity=0.111 Sum_probs=45.4
Q ss_pred CChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChHHHHHH
Q 004938 348 PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR-----RNVISWTSM 422 (722)
Q Consensus 348 p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l 422 (722)
|+...-..+..+....|+..+|...|++...--+..|..+.-.+.++....++...|...++.+.+ +.+.+--.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 343333444445555555555555555554444444444444455555555555555555544432 112222333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 004938 423 INAFAIHGDARNALIFFNKMKD 444 (722)
Q Consensus 423 i~~~~~~g~~~~A~~~~~~m~~ 444 (722)
...|...|.+.+|...|+....
T Consensus 167 aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHH
Confidence 3444445555555555555444
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.011 Score=49.94 Aligned_cols=87 Identities=16% Similarity=0.021 Sum_probs=58.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC---CCchHHHHHHHhh
Q 004938 493 MVDLFGRANLLREALELVETM---PFAPN--VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD---HDGALVLLSNIYA 564 (722)
Q Consensus 493 li~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~ 564 (722)
+..++-..|+.++|+.++++. +.... ...+-.+.+.++..|++++|..++++.++..|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 344555666777777777665 22221 235556777788888888888888888877777 5555666777777
Q ss_pred hCCCcchHHHHHHHH
Q 004938 565 KDKRWQDVGELRKSM 579 (722)
Q Consensus 565 ~~g~~~~a~~~~~~m 579 (722)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 888888887766443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.022 Score=49.99 Aligned_cols=83 Identities=7% Similarity=-0.011 Sum_probs=34.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCH
Q 004938 425 AFAIHGDARNALIFFNKMKDESIDPNGV-TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLL 503 (722)
Q Consensus 425 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 503 (722)
-+...|++++|..+|+-+.. +.|... -|..|..+|...|++++|+..|..... --+.++..+-.+...|...|+.
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHcCCH
Confidence 33444444444444444443 233322 233344444444444444444444443 1122334444444444444444
Q ss_pred HHHHHHHH
Q 004938 504 REALELVE 511 (722)
Q Consensus 504 ~~A~~~~~ 511 (722)
++|.+.|+
T Consensus 120 ~~A~~aF~ 127 (157)
T PRK15363 120 CYAIKALK 127 (157)
T ss_pred HHHHHHHH
Confidence 44444443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.017 Score=60.08 Aligned_cols=119 Identities=13% Similarity=0.121 Sum_probs=78.6
Q ss_pred CCCChhhHHHHHHHHHccCCchHHHHHHHHHHHc--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChHHH
Q 004938 346 MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKN--AFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR----RNVISW 419 (722)
Q Consensus 346 ~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~ 419 (722)
.+.+...+..+++.+....+++.+..++-..... ....-..+..++|..|.+.|..+.+..+++.=.. ||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445666666777777777777777766666553 2222234445777777777777777777765443 677777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004938 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHA 464 (722)
Q Consensus 420 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 464 (722)
|.+++.+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777777666666666666666666554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.64 Score=47.06 Aligned_cols=109 Identities=21% Similarity=0.277 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 004938 286 VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365 (722)
Q Consensus 286 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 365 (722)
+.+..|.-+...|+...|.++-.+..-+|...|...+.+++..++|++-.++-.. +-.+.-|-.++.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3444566667777778888888888888888888889999999998876654321 2234778888899988888
Q ss_pred chHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004938 366 LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410 (722)
Q Consensus 366 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 410 (722)
..+|..+...+ .+..-+.+|.++|++.+|.+.--+
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 88887766551 125677889999999998776443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0064 Score=59.52 Aligned_cols=88 Identities=10% Similarity=0.046 Sum_probs=45.5
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---CchHHHHHHHhhh
Q 004938 494 VDLFGRANLLREALELVETM-PFAPN----VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH---DGALVLLSNIYAK 565 (722)
Q Consensus 494 i~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~ 565 (722)
+..+.+.|++++|...|+.+ ...|+ ...+.-+...+...|+++.|...|+++++..|++ +.++..++.+|..
T Consensus 150 ~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~ 229 (263)
T PRK10803 150 IALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD 229 (263)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH
Confidence 33333445555555555444 11222 1233345555566666666666666666555553 2334445555666
Q ss_pred CCCcchHHHHHHHHHh
Q 004938 566 DKRWQDVGELRKSMKE 581 (722)
Q Consensus 566 ~g~~~~a~~~~~~m~~ 581 (722)
.|++++|.++++.+.+
T Consensus 230 ~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 230 KGDTAKAKAVYQQVIK 245 (263)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666665554
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.014 Score=60.72 Aligned_cols=116 Identities=11% Similarity=0.086 Sum_probs=81.3
Q ss_pred chhhHHHHHHHHHhCCCHHHHHHHHhcCCC-C-----CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHH
Q 004938 151 DPFVQTGLVGMYGACGKILDARLMFDKMSY-R-----DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKI 224 (722)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 224 (722)
+......+++......+++++..++-+... + -..+.+++|+.|.+.|..+.+++++..=...|+=||.+|++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 334444455555555556666666555432 1 1234568888888888888888888888888888888888888
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 004938 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANC 266 (722)
Q Consensus 225 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 266 (722)
|..+.+.|++..|.++...|...+...+..++..-+..+.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888887777666666666555555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.004 Score=63.93 Aligned_cols=65 Identities=14% Similarity=0.021 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCch---HHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGA---LVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 518 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
+...|+.+..+|...|++++|+..|+++++++|++..+ |++++.+|...|+.++|...+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34566666666777777777777777777777766533 666777777777777777766666654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.14 Score=48.28 Aligned_cols=139 Identities=12% Similarity=0.073 Sum_probs=99.3
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHH-----H
Q 004938 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN-----A 390 (722)
Q Consensus 316 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~-----~ 390 (722)
...+.++..+.-.|++.-.+.++++.++...+.+..-...+.+.-.+.|+.+.|...++...+..-..+....+ .
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34566777777778888888888888887655677777778888888899999999998777643333333333 3
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004938 391 IIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456 (722)
Q Consensus 391 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 456 (722)
....|.-.+++..|...|+++.. .|++.-|.-.-+..-.|+..+|++..+.|.. ..|...+-++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es 324 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHES 324 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhh
Confidence 33456667888889999988875 4556666655555567899999999999988 4565554443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.2 Score=48.71 Aligned_cols=172 Identities=14% Similarity=0.106 Sum_probs=104.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--CCh-HH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHH
Q 004938 391 IIDMYAKCGSLESAREVFERMRR--RNV-IS---WTSMINAFAIHGDARNALIFFNKMKDESIDPNG--VTFIGVLYACS 462 (722)
Q Consensus 391 li~~~~~~g~~~~A~~~~~~~~~--~~~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~ 462 (722)
....+.+.|++++|.+.|+.+.. |+. .. .-.++.+|.+.+++++|+..|++.++. .|+. ..+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHh
Confidence 34445667888888888888764 322 11 234556778888888999888888874 4442 33444444433
Q ss_pred h--cC---------------C---HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH
Q 004938 463 H--AG---------------L---VDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIW 522 (722)
Q Consensus 463 ~--~g---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 522 (722)
. .+ + ..+|...|+.+++++ -...-..+|...+..+...--..-
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y----------------P~S~ya~~A~~rl~~l~~~la~~e- 178 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY----------------PNSQYTTDATKRLVFLKDRLAKYE- 178 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC----------------cCChhHHHHHHHHHHHHHHHHHHH-
Confidence 1 11 1 234445555555432 222233444443333310000000
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCC---chHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 523 GSLMAACRVHGEIELAEFAAKQLLQLDPDHD---GALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 523 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
-....-|.+.|.+.-|..-++.+++.-|+.+ .+...+..+|.+.|..++|.++...+..
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 1234457888999999999999999888765 4566888999999999999998876643
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0028 Score=42.75 Aligned_cols=42 Identities=33% Similarity=0.419 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHH
Q 004938 520 VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSN 561 (722)
Q Consensus 520 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 561 (722)
.+|..+..++...|++++|+++++++++.+|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367788999999999999999999999999999988877764
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.042 Score=46.40 Aligned_cols=106 Identities=12% Similarity=0.126 Sum_probs=65.4
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCC---ChhHHHHHHHH
Q 004938 320 AMISGYAENNHPQEALKLFNEMQVCGMKPD--KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG---DLRVNNAIIDM 394 (722)
Q Consensus 320 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~---~~~~~~~li~~ 394 (722)
.+..++-..|+.++|+.+|++....|...+ ...+..+.+++...|++++|..+++...... +. +..+...+.-+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHH
Confidence 345667778888888888888888776544 2345556667778888888888888776642 11 22222233345
Q ss_pred HHhcCCHHHHHHHHHhcCCCChHHHHHHHHHH
Q 004938 395 YAKCGSLESAREVFERMRRRNVISWTSMINAF 426 (722)
Q Consensus 395 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 426 (722)
+...|+.++|.+.+-....++...|.--|..|
T Consensus 85 L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777666554443333444333333
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0048 Score=47.22 Aligned_cols=63 Identities=24% Similarity=0.305 Sum_probs=51.5
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHH
Q 004938 495 DLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALV 557 (722)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 557 (722)
..|.+.+++++|.+.++++ ...| +...|......+...|++++|...++++++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 5677888899999988887 5555 4567778888899999999999999999999998765443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.23 Score=50.68 Aligned_cols=160 Identities=16% Similarity=0.087 Sum_probs=97.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC-------ChHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004938 390 AIIDMYAKCGSLESAREVFERMRRR-------NVISWTSMINAFAI---HGDARNALIFFNKMKDESIDPNGVTFIGVLY 459 (722)
Q Consensus 390 ~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 459 (722)
.++-.|-...+++...++++.+... ....-....-++-+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577777777777777777652 11122223334445 7788888888888665555667777766665
Q ss_pred HHHh---------cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHH----HHHHHH---Hh-----C--CCC
Q 004938 460 ACSH---------AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR----EALELV---ET-----M--PFA 516 (722)
Q Consensus 460 a~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~----~A~~~~---~~-----~--~~~ 516 (722)
.|-. ....++|...|.+.- .+.|+..+--.++.++...|.-. +..++- .. - .-.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 4432 224667777777553 44565544334444444444322 222222 11 1 122
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 004938 517 PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552 (722)
Q Consensus 517 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 552 (722)
.|.-.+.+++.++.-.|+.++|.+++++++.+.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 345566789999999999999999999999998764
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.81 Score=45.93 Aligned_cols=303 Identities=12% Similarity=0.031 Sum_probs=163.3
Q ss_pred HHHHHHhccCCCCCcchHHHHHHHHHh--CCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHH--hcCChHHHHHHHHHH
Q 004938 68 YYALSIFSQIPAPPSRVSNKFIRAISW--SHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA--RAEGLLEGMQVHGLG 143 (722)
Q Consensus 68 ~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~ 143 (722)
..+.+.|..-.+ -..|.+|-.++.. .|+-..|.++-.+-.+. +.-|...+..+|.+-. -.|+.+.|++-|+.|
T Consensus 70 ~t~~Ryfr~rKR--drgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAM 146 (531)
T COG3898 70 YTARRYFRERKR--DRGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAM 146 (531)
T ss_pred HHHHHHHHHHHh--hhHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 345555543221 2346666666654 45555666655543321 2334444555554332 457777777777777
Q ss_pred HHhCCCCchhhH--HHHHHHHHhCCCHHHHHHHHhcCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCC
Q 004938 144 TKLGFGSDPFVQ--TGLVGMYGACGKILDARLMFDKMSYR---DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN-VEPD 217 (722)
Q Consensus 144 ~~~g~~~~~~~~--~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~ 217 (722)
.. .|..... ..|.----+.|..+.|++.-+..-.. -...|.+.+...+..|+++.|+++++.-+... +.++
T Consensus 147 l~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~ 223 (531)
T COG3898 147 LD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKD 223 (531)
T ss_pred hc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchh
Confidence 64 2222111 11111223557777777766655432 22346677777888888888888877665432 3333
Q ss_pred Hh--HHHHHHHHHH---ccCChHHHHHHHHHHHHcCCCCCHhH-HHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHH
Q 004938 218 EM--VLSKILSACS---RAGNLSYGEAVHEFIIDNNVALDAHL-QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMV 291 (722)
Q Consensus 218 ~~--t~~~ll~~~~---~~g~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 291 (722)
.. .-..|+.+-. -..+...|+..-.+..+. .||..- --.-...|.+.|++.++-.+++.+-+.....--..+
T Consensus 224 ~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~l 301 (531)
T COG3898 224 VAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALL 301 (531)
T ss_pred hHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHH
Confidence 32 1222333222 123455555555555543 333222 223345677888888888887776444333333333
Q ss_pred HHHHhcCCHHHH----HHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHH-HccCCc
Q 004938 292 SGYSRAGQVEDA----RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC-AHLGVL 366 (722)
Q Consensus 292 ~~~~~~g~~~~A----~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~g~~ 366 (722)
..+.+.|+.... .+-+..|...|..+--.+..+-...|++..|..--+.... ..|....|..+...- +..|+-
T Consensus 302 Y~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDq 379 (531)
T COG3898 302 YVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQ 379 (531)
T ss_pred HHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCch
Confidence 344455543322 1235566666666666677777777777766655554443 356666666666554 344777
Q ss_pred hHHHHHHHHHHHcC
Q 004938 367 DQAQRIHLYIDKNA 380 (722)
Q Consensus 367 ~~a~~i~~~~~~~~ 380 (722)
.++++.+.+.++..
T Consensus 380 g~vR~wlAqav~AP 393 (531)
T COG3898 380 GKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHHHHHHhcCC
Confidence 77777777776653
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.015 Score=53.47 Aligned_cols=90 Identities=17% Similarity=0.213 Sum_probs=68.0
Q ss_pred CCCcccHHHHHHHHHh-----CCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccC----------------ChHHHH
Q 004938 180 YRDIVPWSVMIDGYFQ-----NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG----------------NLSYGE 238 (722)
Q Consensus 180 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----------------~~~~a~ 238 (722)
.+|-.+|..+|..|.+ .|..+=....+..|.+-|+.-|..+|+.||+.+=+.. +-+.|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4555566666666654 3566666677788888888888888888888764422 346788
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhcCCh
Q 004938 239 AVHEFIIDNNVALDAHLQSTLITMYANCGCM 269 (722)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 269 (722)
+++++|...|+-||..++..|++.+++.+..
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 9999999999999999999999998887753
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.54 E-value=1.2 Score=45.85 Aligned_cols=406 Identities=9% Similarity=0.072 Sum_probs=195.3
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCc------hhhHHHHHHHHHhCCCHHHHHHHHhcCCCCC-cccHHHHHHHH--HhCCC
Q 004938 128 ARAEGLLEGMQVHGLGTKLGFGSD------PFVQTGLVGMYGACGKILDARLMFDKMSYRD-IVPWSVMIDGY--FQNGL 198 (722)
Q Consensus 128 ~~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~--~~~g~ 198 (722)
-+.++..++..+|.++.+.. ..+ ....+.++++|.- .+++.-........+.. -..|-.+..++ -+.+.
T Consensus 17 qkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Confidence 36788899999998887653 222 2334566777754 34444444444443322 33466665543 35788
Q ss_pred hhHHHHHHHHHHHC--CCCCC-----------HhH-HHHHHHHHHccCChHHHHHHHHHHHHcCCC----CCHhHHHHHH
Q 004938 199 FDEVLNLFEEMKMS--NVEPD-----------EMV-LSKILSACSRAGNLSYGEAVHEFIIDNNVA----LDAHLQSTLI 260 (722)
Q Consensus 199 ~~~A~~~~~~m~~~--g~~p~-----------~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~----~~~~~~~~li 260 (722)
+++|++.+..-... +-+|. .+. =+..+......|.+.+|+.+++.++..=++ -+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 88888888777554 32221 111 133445566778888888777777654333 6777777777
Q ss_pred HHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhc--CCchHHHHHH
Q 004938 261 TMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN--NHPQEALKLF 338 (722)
Q Consensus 261 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~ 338 (722)
-++++.=-++.- +.+...=..-|--|+..|.+.=..-++.. +++.. |-......++....-. .+..--.+++
T Consensus 175 lmlsrSYfLEl~----e~~s~dl~pdyYemilfY~kki~~~d~~~-Y~k~~-peeeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 175 LMLSRSYFLELK----ESMSSDLYPDYYEMILFYLKKIHAFDQRP-YEKFI-PEEELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HHHhHHHHHHHH----HhcccccChHHHHHHHHHHHHHHHHhhch-HHhhC-cHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 776654222211 11111112234445555433211111100 00000 0001111111111111 1122222333
Q ss_pred HHHHhCCCCCChh-hHHHHHHHHHccCCchHHHHHHHHHHHcCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 004938 339 NEMQVCGMKPDKV-TMLSVISACAHLGVLDQAQRIHLYIDKNAFGG----DLRVNNAIIDMYAKCGSLESAREVFERMRR 413 (722)
Q Consensus 339 ~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 413 (722)
..-...-+.|+.. ....+...+.+ +.+++..+-+.+....+.+ -+..+..++....+.++...|.+.+.-+.-
T Consensus 249 ~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 249 ENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 3333344566543 23334444443 5666666655554432211 234566667777788888888888776653
Q ss_pred --CChH-------HHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHH-HHHH---HHHHhcCC-HHHHHHHHH
Q 004938 414 --RNVI-------SWTSMINAFAI----HGDARNALIFFNKMKDESIDPNGVTF-IGVL---YACSHAGL-VDEGREIFA 475 (722)
Q Consensus 414 --~~~~-------~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll---~a~~~~g~-~~~a~~~~~ 475 (722)
|+.. +-.++-+..+. ..+...=+.+|+..... ..|..-. ..++ .-+-+.|. -++|.++++
T Consensus 327 ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~--DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk 404 (549)
T PF07079_consen 327 LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSY--DIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLK 404 (549)
T ss_pred cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhh--cccHHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 4332 11222222221 11112223333333321 1111100 0011 11122222 233333322
Q ss_pred Hh----------------------------------------HhhcCCCCC----cchHHHHHHH--HHhcCCHHHHHHH
Q 004938 476 SM----------------------------------------TNEYNIPPK----YEHYGCMVDL--FGRANLLREALEL 509 (722)
Q Consensus 476 ~~----------------------------------------~~~~~~~~~----~~~~~~li~~--~~~~g~~~~A~~~ 509 (722)
.+ +++-|++|- .+.-|+|.++ +...|++.++.-.
T Consensus 405 ~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y 484 (549)
T PF07079_consen 405 LILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY 484 (549)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 22 222355553 2344555554 3456777776654
Q ss_pred HHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004938 510 VETM-PFAPNVVIWGSLMAACRVHGEIELAEFAAKQL 545 (722)
Q Consensus 510 ~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 545 (722)
-.-. .+.|++.+|..++-....+.++++|...+..+
T Consensus 485 s~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 485 SSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 3333 57899999988888888899999999887654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.48 E-value=1.7 Score=46.99 Aligned_cols=30 Identities=13% Similarity=-0.091 Sum_probs=18.1
Q ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHhcC
Q 004938 149 GSDPFVQTGLVGMYGACGKILDARLMFDKM 178 (722)
Q Consensus 149 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m 178 (722)
.|.+..|..|...-.+.-.++-|+..|-+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 566666666666555555666666655444
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.48 E-value=1.3 Score=45.46 Aligned_cols=144 Identities=17% Similarity=0.233 Sum_probs=95.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 004938 385 LRVNNAIIDMYAKCGSLESAREVFERMRR-----RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF-IGVL 458 (722)
Q Consensus 385 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll 458 (722)
..+|..+++.-.+..-++.|+.+|-+..+ +++..++++|.-++ .|+..-|..+|+--.. .-||...| .-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHHH
Confidence 45666677777777777777777777654 56667777777665 4666777777776444 24554433 3445
Q ss_pred HHHHhcCCHHHHHHHHHHhHhhcCCCCC--cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcC
Q 004938 459 YACSHAGLVDEGREIFASMTNEYNIPPK--YEHYGCMVDLFGRANLLREALELVETM-PFAPNVVIWGSLMAACRVHG 533 (722)
Q Consensus 459 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g 533 (722)
.-+...++-+.|..+|+.... .+..+ ...|..+++-=..-|++..+..+=+++ ..-|...+-....+-|....
T Consensus 474 ~fLi~inde~naraLFetsv~--r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik~ 549 (660)
T COG5107 474 LFLIRINDEENARALFETSVE--RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIKA 549 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHH--HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhhc
Confidence 556677888888888886665 23333 567888888888888988888877777 34455555555555565443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.46 E-value=1.6 Score=46.56 Aligned_cols=181 Identities=17% Similarity=0.137 Sum_probs=125.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004938 384 DLRVNNAIIDMYAKCGSLESAREVFERMRRR---NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460 (722)
Q Consensus 384 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 460 (722)
+..+|...++.-.+.|+.+.+.-+|++..-| -...|--.+.-....|+.+-|-.++....+--++-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4667888888889999999999999988754 3346666666666668888888777766553233223332222233
Q ss_pred HHhcCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH-----HHH
Q 004938 461 CSHAGLVDEGREIFASMTNEYNIPPK-YEHYGCMVDLFGRANLLREAL---ELVETM-PFAPNVVIWGSLMA-----ACR 530 (722)
Q Consensus 461 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~ll~-----~~~ 530 (722)
+-..|+.+.|..+++.+.+++ |+ ...-.--+.+..|.|..+.+. +++... +..-+..+...+.- -+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 567899999999999999853 44 344444566677889998888 555544 22222222222221 244
Q ss_pred HcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCC
Q 004938 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDK 567 (722)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 567 (722)
..++.+.|..++.++.+..|++...|..+.++....+
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 5789999999999999999999999998888876655
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.034 Score=54.53 Aligned_cols=92 Identities=12% Similarity=0.061 Sum_probs=57.1
Q ss_pred HhcCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCH
Q 004938 462 SHAGLVDEGREIFASMTNEYNIPP-KYEHYGCMVDLFGRANLLREALELVETM-PFAPN----VVIWGSLMAACRVHGEI 535 (722)
Q Consensus 462 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~ 535 (722)
.+.|++++|...|+.+.+.+.-.+ ....+--+...|...|++++|...|+.+ ...|+ ...|..+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 444566666666666655321111 0134445566666666666666666665 11122 34555566677789999
Q ss_pred HHHHHHHHHHHccCCCCC
Q 004938 536 ELAEFAAKQLLQLDPDHD 553 (722)
Q Consensus 536 ~~a~~~~~~~~~~~p~~~ 553 (722)
+.|...|+++++..|++.
T Consensus 234 ~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHHHHCcCCH
Confidence 999999999999999875
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.091 Score=49.49 Aligned_cols=135 Identities=13% Similarity=0.066 Sum_probs=97.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccC----CchHH-----HHH
Q 004938 220 VLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK----NLVVS-----TAM 290 (722)
Q Consensus 220 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~-----~~l 290 (722)
...+++......+.+.-...++..+++...+.++.....|+++-.+.||.+.|...|+++.+. |.... ..+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 445666666777888888888888888877788888999999999999999999999866432 22222 233
Q ss_pred HHHHHhcCCHHHHHHHHhccCCC---CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHH
Q 004938 291 VSGYSRAGQVEDARLIFDQMVEK---DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356 (722)
Q Consensus 291 i~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 356 (722)
...|.-++++.+|...|++++.. |++.-|.-.-...-.|+..+|++.++.|.+. .|...+-+++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 34466778888888888887665 4555665555566678889999999998875 4555444433
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.37 E-value=2.1 Score=46.87 Aligned_cols=109 Identities=16% Similarity=0.195 Sum_probs=80.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 004938 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLV 467 (722)
Q Consensus 388 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 467 (722)
.+--+.-+...|+..+|.++-.+..-||-..|---+.+++..+++++-+++-+.+. .+.-|.-...+|.+.|+.
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~ 760 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNK 760 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccH
Confidence 34444456677888899998888888888888888888888888887666655432 145566778888999999
Q ss_pred HHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 004938 468 DEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVET 512 (722)
Q Consensus 468 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 512 (722)
++|..++-+... . .-.+.+|.+.|++.+|.++--+
T Consensus 761 ~EA~KYiprv~~---l-------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 761 DEAKKYIPRVGG---L-------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHhhhhhccCC---h-------HHHHHHHHHhccHHHHHHHHHH
Confidence 998888765431 1 1567888888888888776544
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.029 Score=51.64 Aligned_cols=93 Identities=11% Similarity=0.195 Sum_probs=64.0
Q ss_pred Hhcc--CCCCcchHHHHHHHHHhc-----CCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc----------------
Q 004938 307 FDQM--VEKDLICWSAMISGYAEN-----NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHL---------------- 363 (722)
Q Consensus 307 f~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---------------- 363 (722)
|+.. ..+|..+|..++..|.+. |..+-....++.|.+-|+.-|..+|+.||+.+=+.
T Consensus 37 f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp 116 (228)
T PF06239_consen 37 FERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYP 116 (228)
T ss_pred HHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCc
Confidence 5554 445666777777766644 56666677778888888888888888888776432
Q ss_pred CCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 004938 364 GVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399 (722)
Q Consensus 364 g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g 399 (722)
.+-+-|..++++|...|+-||..++..|++.+++.+
T Consensus 117 ~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 117 RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 234556777777777777777777777777775544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.32 E-value=2.2 Score=46.66 Aligned_cols=335 Identities=9% Similarity=0.049 Sum_probs=177.2
Q ss_pred CCCCCCHhHHH-----HHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC---hHHHHHHHHhccc--
Q 004938 212 SNVEPDEMVLS-----KILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC---MDMAKGLFDKVLL-- 281 (722)
Q Consensus 212 ~g~~p~~~t~~-----~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~-- 281 (722)
-|+..+..-|. .+|.-+...+.+..|.++-..+...-... ..++.....-+.+..+ -+-+..+=+++..
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 45555554443 34555556666777777665553221111 4566666666665532 2233333333333
Q ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHhccCCC--------CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhH
Q 004938 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK--------DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353 (722)
Q Consensus 282 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 353 (722)
..-++|..+..---.+|+.+-|.++++.=+.. +..-+..-+.-..+.|+.+-...++-.+.+. .+...|
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l 581 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSL 581 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHH
Confidence 34456666666666777777777776543222 1222333444445555555555555444432 111111
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHH--HhcC-----CCChHHHHHHHHHH
Q 004938 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVF--ERMR-----RRNVISWTSMINAF 426 (722)
Q Consensus 354 ~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~--~~~~-----~~~~~~~~~li~~~ 426 (722)
...+ .+...|..+|.+..+..-. ..|-+.|-...+. .+...| +... +.-........+.+
T Consensus 582 ~~~l------~~~p~a~~lY~~~~r~~~~------~~l~d~y~q~dn~-~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~ 648 (829)
T KOG2280|consen 582 FMTL------RNQPLALSLYRQFMRHQDR------ATLYDFYNQDDNH-QALASFHLQASYAAETIEGRIPALKTAANAF 648 (829)
T ss_pred HHHH------HhchhhhHHHHHHHHhhch------hhhhhhhhcccch-hhhhhhhhhhhhhhhhhcccchhHHHHHHHH
Confidence 1111 1223344444444332100 1111222222222 221111 1100 01111122222333
Q ss_pred HHcCC---HH-------HHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 004938 427 AIHGD---AR-------NALIFFNKMKD-ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495 (722)
Q Consensus 427 ~~~g~---~~-------~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 495 (722)
.+... .+ +-+++.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.+ -||...|..-+.
T Consensus 649 a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~ 723 (829)
T KOG2280|consen 649 AKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLT 723 (829)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHH
Confidence 33322 11 22223333332 2333444566666777888999999988876553 378888888899
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHH
Q 004938 496 LFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGEL 575 (722)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 575 (722)
+++..+++++-+++-+++. .+.-|.-...+|.+.|+.++|...+-+.-.+ .-...+|.+.|++.+|.+.
T Consensus 724 aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 724 ALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHH
Confidence 9999999999998888773 1344556778999999999999887665322 2567889999999999877
Q ss_pred HHHH
Q 004938 576 RKSM 579 (722)
Q Consensus 576 ~~~m 579 (722)
--+-
T Consensus 793 A~~~ 796 (829)
T KOG2280|consen 793 AAEH 796 (829)
T ss_pred HHHh
Confidence 5443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.37 Score=46.89 Aligned_cols=177 Identities=13% Similarity=0.091 Sum_probs=81.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHh-HH---HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 004938 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEM-VL---SKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264 (722)
Q Consensus 189 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~---~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 264 (722)
....+.+.|++++|++.|++.... -|+.. +. -.+..++.+.++++.|...++..++.-+.....-+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 344455667777777777777664 23222 11 2344556677777777777777776543222222222222221
Q ss_pred h--cC---------------ChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 004938 265 N--CG---------------CMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAE 327 (722)
Q Consensus 265 ~--~g---------------~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 327 (722)
. .+ +...+.+.+ ..+..++.-|=.+.-..+|...+..+..+-...--.+...|.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~--------~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~ 187 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAF--------RDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTK 187 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHH--------HHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 10 111111110 1122333333333334444433333322211111133445666
Q ss_pred cCCchHHHHHHHHHHhC--CCCCChhhHHHHHHHHHccCCchHHHHHHHH
Q 004938 328 NNHPQEALKLFNEMQVC--GMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375 (722)
Q Consensus 328 ~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~ 375 (722)
.|.+..|+.-|+.+++. +.+........+..++...|..++|..+...
T Consensus 188 ~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 188 RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 77777777777766653 1112223444555555566666655554443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.15 Score=51.22 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=32.0
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHh----HHHHHHHHHHccCChHHHHHHHHH
Q 004938 192 GYFQNGLFDEVLNLFEEMKMSNVEPDEM----VLSKILSACSRAGNLSYGEAVHEF 243 (722)
Q Consensus 192 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~ 243 (722)
-+++.|+....+.+|+...+.|.. |.. .|..|-++|.-.+++++|.+.|..
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~h 80 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTH 80 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhh
Confidence 356777777777777777776632 333 344455566666677777776643
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.22 Score=52.88 Aligned_cols=81 Identities=11% Similarity=0.044 Sum_probs=52.6
Q ss_pred HHHHHHHHHhCCC--chHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHH
Q 004938 85 SNKFIRAISWSHR--PKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMY 162 (722)
Q Consensus 85 ~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 162 (722)
++.--.+|.+-.+ +-+.+.-+++|.++|-.|+.... ...|+-.|.+.+|.++|. +.|.+ |..+.+|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk---~~G~e------nRAlEmy 668 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFK---RSGHE------NRALEMY 668 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHH---HcCch------hhHHHHH
Confidence 4444455554433 34455566778888888887543 344666788888888875 44533 5567778
Q ss_pred HhCCCHHHHHHHHhc
Q 004938 163 GACGKILDARLMFDK 177 (722)
Q Consensus 163 ~~~g~~~~A~~~f~~ 177 (722)
-....+|.|.++...
T Consensus 669 TDlRMFD~aQE~~~~ 683 (1081)
T KOG1538|consen 669 TDLRMFDYAQEFLGS 683 (1081)
T ss_pred HHHHHHHHHHHHhhc
Confidence 777778888777654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.096 Score=46.50 Aligned_cols=107 Identities=20% Similarity=0.209 Sum_probs=71.3
Q ss_pred HHhcCCHHHHHHHHHHhHhhcCCC--CCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004938 461 CSHAGLVDEGREIFASMTNEYNIP--PKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538 (722)
Q Consensus 461 ~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 538 (722)
....|+.+.+.+.+..+..-+.-+ |+... ........+.+++. -......++..+...|+++.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHH
Confidence 345667777777777776543221 11111 11222222333322 123456677788899999999
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 539 EFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 539 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
...+++++..+|-+...|..+..+|...|+..+|.++++.+..
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998863
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.15 E-value=1.3 Score=42.23 Aligned_cols=196 Identities=21% Similarity=0.149 Sum_probs=112.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004938 385 LRVNNAIIDMYAKCGSLESAREVFERMR-----RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459 (722)
Q Consensus 385 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 459 (722)
..........+...+.+..+...+.... ......+..+...+...++...+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3445555556666666666666655543 23334555555556666666677777666665322221 11112222
Q ss_pred -HHHhcCCHHHHHHHHHHhHhhcCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHHcC
Q 004938 460 -ACSHAGLVDEGREIFASMTNEYNI--PPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN--VVIWGSLMAACRVHG 533 (722)
Q Consensus 460 -a~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~g 533 (722)
.+...|+++++...+..... ... ......+......+...++.++|...+.+. ...|+ ...+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 56667777777777776633 111 012223333333455667777777777666 33333 456666667777777
Q ss_pred CHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 534 EIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 534 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
+.+.+...+.++.+..|.....+..++..+...|.++++...+....+.
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777777777777777764455556666666666677777766666553
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.057 Score=54.40 Aligned_cols=63 Identities=16% Similarity=0.034 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 520 VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 520 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
.++..|...|.+.+++..|+....++++++|+|..+.+.-+.+|...|.++.|+..|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 456667777888999999999999999999999999999999999999999999999999874
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.0088 Score=46.46 Aligned_cols=62 Identities=16% Similarity=0.161 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcc----CCC---CCchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 520 VIWGSLMAACRVHGEIELAEFAAKQLLQL----DPD---HDGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 520 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
.+++.+...+...|++++|+..+++++++ +++ ...++..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46677777788888888888888887754 222 234666888888888888888888877643
|
... |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.93 E-value=1.6 Score=41.52 Aligned_cols=219 Identities=21% Similarity=0.152 Sum_probs=144.0
Q ss_pred CCchHHHHHHHHHHhCCCC-CChhhHHHHHHHHHccCCchHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCCHHHHHH
Q 004938 329 NHPQEALKLFNEMQVCGMK-PDKVTMLSVISACAHLGVLDQAQRIHLYIDKN-AFGGDLRVNNAIIDMYAKCGSLESARE 406 (722)
Q Consensus 329 g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~ 406 (722)
+....+...+......... .....+......+...+.+..+...+...... ........+..+...+...++++.+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444443211 12345555555666666666666666655542 233444555566666677777778877
Q ss_pred HHHhcCC--CCh-HHHHHHHH-HHHHcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004938 407 VFERMRR--RNV-ISWTSMIN-AFAIHGDARNALIFFNKMKDESIDP----NGVTFIGVLYACSHAGLVDEGREIFASMT 478 (722)
Q Consensus 407 ~~~~~~~--~~~-~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 478 (722)
.+..... ++. ........ .+...|+.+.|...|.+... ..| ....+......+...++.+++...+....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 7777664 221 22333333 67888999999999998855 344 23344444445677889999999999888
Q ss_pred hhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004938 479 NEYNIPP-KYEHYGCMVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551 (722)
Q Consensus 479 ~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 551 (722)
. ..+. ....+..+...+...+.+++|...+... ...|+ ...+..+...+...++.+.+...+.+..+..|.
T Consensus 195 ~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 K--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred h--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 6 3334 4677888888899999999999999887 44454 455555666666777899999999999999887
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.52 Score=39.60 Aligned_cols=140 Identities=17% Similarity=0.165 Sum_probs=85.3
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHH
Q 004938 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREA 506 (722)
Q Consensus 427 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 506 (722)
.-.|..++..++..+.... .+..-++.++--....-+-+-..+.++.+-+-+.+ ..+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHHH
Confidence 3467778888888877663 23444555554444445555556666665443222 234444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCCc
Q 004938 507 LELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGIL 585 (722)
Q Consensus 507 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 585 (722)
...+-.++ .+.......+++...+|+-+.-.+++..+.+.+..++.....++++|.+.|+..++.+++++.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44444443 133445566788889999999999999998766667789999999999999999999999999999975
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.012 Score=45.78 Aligned_cols=60 Identities=18% Similarity=0.177 Sum_probs=36.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004938 489 HYGCMVDLFGRANLLREALELVETM-------P-FAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQL 548 (722)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 548 (722)
.|+.+...|.+.|++++|++.+++. + ..|+ ..++..+...+...|++++|+..+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3444555555555555555555443 1 1122 456777788888888888888888887754
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.09 Score=51.06 Aligned_cols=30 Identities=20% Similarity=0.396 Sum_probs=15.9
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004938 415 NVISWTSMINAFAIHGDARNALIFFNKMKD 444 (722)
Q Consensus 415 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 444 (722)
|...|-.|...|...|+.+.|...|.+..+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 444555555555555555555555555544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.77 E-value=1.9 Score=43.75 Aligned_cols=51 Identities=12% Similarity=0.055 Sum_probs=22.9
Q ss_pred HHcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004938 427 AIHGDARNALIFFNKMKDE---SIDPNGVTFIGVLYACSHAGLVDEGREIFASM 477 (722)
Q Consensus 427 ~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 477 (722)
.+.|++..|.+.|.+.+.. ..+|+...|.....+..+.|+.++|+.--+..
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~A 313 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEA 313 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence 3455555555555554441 12222233444444444555555555444443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.99 Score=42.61 Aligned_cols=161 Identities=17% Similarity=0.152 Sum_probs=85.2
Q ss_pred HHHhcCCHHHHHHHHHhcCC--CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHh--
Q 004938 394 MYAKCGSLESAREVFERMRR--RN----VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG--VTFIGVLYACSH-- 463 (722)
Q Consensus 394 ~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~-- 463 (722)
.+...|++++|.+.|+.+.. |+ ....-.++.++.+.|++++|...|++.++. -|+. ..+...+.+.+.
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHHH
Confidence 34556677777777766653 21 234455666777777777777777777663 3332 122222222221
Q ss_pred -----------cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 004938 464 -----------AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH 532 (722)
Q Consensus 464 -----------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 532 (722)
.+...+|...|+.+++++ =......+|...+..+...--.. --.+..-|.+.
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~~~~li~~y----------------P~S~y~~~A~~~l~~l~~~la~~-e~~ia~~Y~~~ 154 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEEFEELIKRY----------------PNSEYAEEAKKRLAELRNRLAEH-ELYIARFYYKR 154 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHHHHHHHHH-----------------TTSTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHCT
T ss_pred hCccchhcccChHHHHHHHHHHHHHHHHC----------------cCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHc
Confidence 122334555555555432 22233334443333321000000 01234457788
Q ss_pred CCHHHHHHHHHHHHccCCCCCc---hHHHHHHHhhhCCCcchHH
Q 004938 533 GEIELAEFAAKQLLQLDPDHDG---ALVLLSNIYAKDKRWQDVG 573 (722)
Q Consensus 533 g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~ 573 (722)
|.+..|..-++.+++.-|+.+. +...++.+|.+.|..+.|.
T Consensus 155 ~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9999999999999999988653 4567888888888887444
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.058 Score=55.69 Aligned_cols=63 Identities=16% Similarity=0.026 Sum_probs=47.5
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004938 486 KYEHYGCMVDLFGRANLLREALELVETM-PFAPNV----VIWGSLMAACRVHGEIELAEFAAKQLLQL 548 (722)
Q Consensus 486 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 548 (722)
+...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556777777777888888888887775 566663 35788888888888888888888888876
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.12 Score=43.13 Aligned_cols=89 Identities=21% Similarity=0.154 Sum_probs=66.1
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-CCCC---chHHHHHHHhhhCCCc
Q 004938 496 LFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLD-PDHD---GALVLLSNIYAKDKRW 569 (722)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~---~~~~~l~~~~~~~g~~ 569 (722)
++...|+++.|++.|.+. .+-| ....||.-..+++-+|+.++|+.-+++++++. |... ..|+.-+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 456677778887777765 3333 56778888888888888888888888888874 3321 3567778888888888
Q ss_pred chHHHHHHHHHhCCC
Q 004938 570 QDVGELRKSMKERGI 584 (722)
Q Consensus 570 ~~a~~~~~~m~~~g~ 584 (722)
+.|..-|+..-+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 888888888777663
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.37 E-value=1.2 Score=42.15 Aligned_cols=143 Identities=17% Similarity=0.175 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHH
Q 004938 418 SWTSMINAFAIHGDARNALIFFNKMKDESIDPN----GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCM 493 (722)
Q Consensus 418 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 493 (722)
.+-.....+...|++.+|++.|+++... -|+ ......++.++.+.|++++|...++...+.+.-.|... +...
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y 83 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALY 83 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHH
Confidence 3334455567788888888888888774 232 23456677788888888888888888877554433321 1111
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCc-----------------hH
Q 004938 494 VDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG-----------------AL 556 (722)
Q Consensus 494 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----------------~~ 556 (722)
..+.+.-....... ......+...+|...++.+++..|+++- .-
T Consensus 84 ~~g~~~~~~~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e 144 (203)
T PF13525_consen 84 MLGLSYYKQIPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHE 144 (203)
T ss_dssp HHHHHHHHHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHH
Confidence 11111100000000 0112233456677777777777777552 22
Q ss_pred HHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 557 VLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 557 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
..++..|.+.|.+..|..-++.+.+.
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 35788899999999999999998774
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.4 Score=48.57 Aligned_cols=94 Identities=19% Similarity=0.210 Sum_probs=72.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhC
Q 004938 489 HYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKD 566 (722)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 566 (722)
.+..+.-.|.+.+.+.+|+...++. ..+| |.-..---..+|...|+++.|+..|+++++++|+|-.+...|+.+-.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 4566677777888888888777766 3344 5556666678899999999999999999999999988888888777666
Q ss_pred CCcchH-HHHHHHHHhC
Q 004938 567 KRWQDV-GELRKSMKER 582 (722)
Q Consensus 567 g~~~~a-~~~~~~m~~~ 582 (722)
...++. .++|..|-.+
T Consensus 339 ~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 655554 6788888654
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.44 Score=47.18 Aligned_cols=122 Identities=12% Similarity=0.061 Sum_probs=59.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhhcCCCC----CcchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHH-----
Q 004938 457 VLYACSHAGLVDEGREIFASMTNEYNIPP----KYEHYGCMVDLFGRANLLREALELVETM-------PFAPNVV----- 520 (722)
Q Consensus 457 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~----- 520 (722)
+..+....+.++++++.|+.+.+-..-.. ...+|..|...|++..++++|.-+..+. +++.-..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 33444445556666666666554111111 1345666666666666666655444332 2221111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccC--CCCC----chHHHHHHHhhhCCCcchHHHHHHH
Q 004938 521 IWGSLMAACRVHGEIELAEFAAKQLLQLD--PDHD----GALVLLSNIYAKDKRWQDVGELRKS 578 (722)
Q Consensus 521 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~ 578 (722)
+...+.-+++..|..-.|.+..+++.++. ..|. .....++++|...|+.+.|..-++.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 12223335566666666666666655432 1221 2233566666666666665554444
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.21 Score=42.66 Aligned_cols=50 Identities=14% Similarity=0.289 Sum_probs=35.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 004938 446 SIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495 (722)
Q Consensus 446 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 495 (722)
...|+..+..+++.+++..|++..|.++.+...+.|+++-+...|..|+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 35577777777777777777777777777777777776666666665554
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.12 Score=49.65 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=27.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCC---CchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 525 LMAACRVHGEIELAEFAAKQLLQLDPDH---DGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 525 ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
|+..+...|+++.|...|..+.+-.|++ +..+.-|+.+..+.|+.++|..+++++.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4444555555555555555555443332 23444555555555555555555555443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.7 Score=48.09 Aligned_cols=142 Identities=13% Similarity=0.130 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHH-cCCCCCHH-HHHHHHHHHHh---------cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhc
Q 004938 432 ARNALIFFNKMKD-ESIDPNGV-TFIGVLYACSH---------AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRA 500 (722)
Q Consensus 432 ~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~a~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 500 (722)
.+.|+.+|.+... ..+.|+.. .|..+..++.. .....+|.+.-+...+ --+.|......+..++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhh
Confidence 4577778888772 23567643 33333322211 2345566666666665 3344566666666666777
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHH--HHHHHhhhCCCcchHHHHH
Q 004938 501 NLLREALELVETM-PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALV--LLSNIYAKDKRWQDVGELR 576 (722)
Q Consensus 501 g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~a~~~~ 576 (722)
|+++.|...|++. ...|| ..+|......+.-.|+.++|.+.++++++++|.-..+-. ..+++|... ..++|.+++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHH
Confidence 7788888888887 56665 456666666677788888888888888888887554433 333345543 345555554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.12 E-value=7 Score=43.59 Aligned_cols=172 Identities=13% Similarity=0.097 Sum_probs=92.6
Q ss_pred HHHHHHHhCCCHHHHHHHHhcCCCCCcccHH----HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccC
Q 004938 157 GLVGMYGACGKILDARLMFDKMSYRDIVPWS----VMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG 232 (722)
Q Consensus 157 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 232 (722)
.-++++.+...++.|+.+-+.-.. |...-. .-.+-+.+.|++++|...|-+-... +.|. .++.-+....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq 411 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHH
Confidence 345555666666666666544322 111111 1223345678888887777665432 2332 2344444444
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCch--HHHHHHHHHHhcCCHHHHHHHHhcc
Q 004938 233 NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLV--VSTAMVSGYSRAGQVEDARLIFDQM 310 (722)
Q Consensus 233 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~~ 310 (722)
....--.+++.+.+.|+. +...-+.|+.+|.|.++.++-.+..++.. .+.. -....+..+-+.+-.++|..+-..-
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 445555566677777765 55566778888888888887777766654 2211 1233444444555555554443333
Q ss_pred CCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 004938 311 VEKDLICWSAMISGYAENNHPQEALKLFNEM 341 (722)
Q Consensus 311 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 341 (722)
.. +... +--.+-..+++++|++.+..|
T Consensus 490 ~~-he~v---l~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 490 KK-HEWV---LDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred cc-CHHH---HHHHHHHhcCHHHHHHHHhcC
Confidence 22 1222 222334557778888777665
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.25 Score=42.64 Aligned_cols=57 Identities=25% Similarity=0.288 Sum_probs=36.7
Q ss_pred HhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCc
Q 004938 498 GRANLLREALELVETM----PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554 (722)
Q Consensus 498 ~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 554 (722)
.+.|++++|.+.|+.+ |..| ..-.-..|+.++.+.+++++|...+++.+++.|.++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 4456666666666555 2222 1233445677788888888888888888888877654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.29 Score=50.83 Aligned_cols=117 Identities=12% Similarity=0.104 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHh---------cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 004938 466 LVDEGREIFASMTNEYNIPPK-YEHYGCMVDLFGR---------ANLLREALELVETM-PFAP-NVVIWGSLMAACRVHG 533 (722)
Q Consensus 466 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 533 (722)
..+.|..+|.+......+.|+ ...|..+...+.. .....+|.++.++. ...| |+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 356788888888744455565 3555555544322 23455677777666 4555 6677777777778888
Q ss_pred CHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 534 EIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 534 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
+++.|...|+++..++|+.+..+...+.+..-.|+.++|.+.+++..+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999999886554
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.97 E-value=7.4 Score=43.05 Aligned_cols=101 Identities=11% Similarity=0.082 Sum_probs=59.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCC---chhhHHHHHHHHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhH
Q 004938 125 KAIARAEGLLEGMQVHGLGTKLGFGS---DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDE 201 (722)
Q Consensus 125 ~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 201 (722)
+.+.+.+.+++|...-+... |..+ -..++..+|..+...|++++|-.+.-.|...+..-|-..+.-+...++...
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 34444555555555443322 2233 334566777777778888888888877777777777777777777766554
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHc
Q 004938 202 VLNLFEEMKMSNVEPDEMVLSKILSACSR 230 (722)
Q Consensus 202 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 230 (722)
...+ +....-+.+...|..+|..+..
T Consensus 442 Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 442 IAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 4333 2222222345566666666654
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.047 Score=34.18 Aligned_cols=33 Identities=30% Similarity=0.246 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 004938 520 VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552 (722)
Q Consensus 520 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 552 (722)
.+|..+...+...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 468888899999999999999999999999863
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.072 Score=33.24 Aligned_cols=33 Identities=30% Similarity=0.288 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 004938 520 VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552 (722)
Q Consensus 520 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 552 (722)
..|..+...+...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 457778888999999999999999999999875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.75 E-value=7.1 Score=42.18 Aligned_cols=172 Identities=17% Similarity=0.154 Sum_probs=112.0
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHh------HHHHHHHHHHh----cCChHH
Q 004938 202 VLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAH------LQSTLITMYAN----CGCMDM 271 (722)
Q Consensus 202 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~------~~~~li~~~~~----~g~~~~ 271 (722)
...+|.-+... ++| .+..++....-.||-+.+.+.+....+.+-...+. .|...+..++- ....+.
T Consensus 176 G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 176 GFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 34555555543 333 35566777777899999999888876643221222 23333333332 456788
Q ss_pred HHHHHHhccc--CCchHHHHH-HHHHHhcCCHHHHHHHHhccCCC-------CcchHHHHHHHHHhcCCchHHHHHHHHH
Q 004938 272 AKGLFDKVLL--KNLVVSTAM-VSGYSRAGQVEDARLIFDQMVEK-------DLICWSAMISGYAENNHPQEALKLFNEM 341 (722)
Q Consensus 272 A~~~~~~~~~--~~~~~~~~l-i~~~~~~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m 341 (722)
|.++++.+.. |+...|.-. ...+...|++++|.+.|++.... ....+--+.-.+.-.++|++|.+.|..+
T Consensus 252 a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 252 AEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 9999999876 666666543 34567789999999999975432 2234555666788889999999999999
Q ss_pred HhCCCCCChhhHHHHHHHH-HccCCc-------hHHHHHHHHHHH
Q 004938 342 QVCGMKPDKVTMLSVISAC-AHLGVL-------DQAQRIHLYIDK 378 (722)
Q Consensus 342 ~~~g~~p~~~t~~~ll~~~-~~~g~~-------~~a~~i~~~~~~ 378 (722)
.+.. ..+..+|.-+..+| ...|+. ++|..++..+..
T Consensus 332 ~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 332 LKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred Hhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 8754 44455555555544 456666 777777776643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.69 E-value=3.3 Score=39.65 Aligned_cols=142 Identities=15% Similarity=0.175 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHH
Q 004938 417 ISWTSMINAFAIHGDARNALIFFNKMKDES-IDP-NGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMV 494 (722)
Q Consensus 417 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 494 (722)
..|-.-+..-.+.|++++|.+.|+.+...- ..| ...+...++.+..+.+++++|....++..+.++-.|+.. |...+
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Yl 113 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYL 113 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHH
Confidence 334444444556778888888887777631 111 234566666677777777787777777777666666543 33333
Q ss_pred HHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCC-----------------chH
Q 004938 495 DLFGRANLLREALELVETMP-FAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD-----------------GAL 556 (722)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-----------------~~~ 556 (722)
.++. .|..++ ...|. .-...|...++.++..-|++. ..-
T Consensus 114 kgLs----------~~~~i~~~~rDq-------------~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~E 170 (254)
T COG4105 114 KGLS----------YFFQIDDVTRDQ-------------SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHE 170 (254)
T ss_pred HHHH----------HhccCCccccCH-------------HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 3333 111111 00011 112344455555555555543 223
Q ss_pred HHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 557 VLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 557 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
..+++.|.+.|.|..|..-++.|.+.
T Consensus 171 m~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 171 MAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 46788999999999999999999885
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.42 Score=40.85 Aligned_cols=79 Identities=20% Similarity=0.294 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhH--------------hhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC---
Q 004938 451 GVTFIGVLYACSHAGLVDEGREIFASMT--------------NEYNIPPKYEHYGCMVDLFGRANLLREALELVETM--- 513 (722)
Q Consensus 451 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~--------------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--- 513 (722)
..++..++.++++.|+++....+.+..- ......|+..+..+++.+|+..|++..|+++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3455555556666666555555554331 11233455555555555555555555555555544
Q ss_pred -CCCCCHHHHHHHHHHH
Q 004938 514 -PFAPNVVIWGSLMAAC 529 (722)
Q Consensus 514 -~~~p~~~~~~~ll~~~ 529 (722)
+++-+...|..|+.-+
T Consensus 82 Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWA 98 (126)
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 3333455555555443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.36 E-value=1.2 Score=43.87 Aligned_cols=112 Identities=9% Similarity=0.062 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH----HHHHHhcCCHHHHH
Q 004938 399 GSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV----LYACSHAGLVDEGR 471 (722)
Q Consensus 399 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l----l~a~~~~g~~~~a~ 471 (722)
|+..+|-..++++.+ .|..+|+--=.+|.-.|+.+.-...+++.... ..||...|..+ .-++...|-+++|.
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 444444444444432 34444554445555555555555555554432 23333222111 11233445555555
Q ss_pred HHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 004938 472 EIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513 (722)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 513 (722)
+.-++..+ --+.|.-.-.++...+...|+..|+.+++.+-
T Consensus 196 k~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 196 KQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 55444433 11112222223344444455555555555443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.36 E-value=1 Score=46.98 Aligned_cols=147 Identities=16% Similarity=0.122 Sum_probs=80.3
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHH---
Q 004938 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR--- 504 (722)
Q Consensus 428 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--- 504 (722)
+..+...-+++-++..+ +.||..+-..++ +--....+.++.++|++..+. +- . .|.+....+
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-gE----~-------~lg~s~~~~~~g 244 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-GE----A-------SLGKSQFLQHHG 244 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-HH----H-------hhchhhhhhccc
Confidence 45556666666666666 567665433333 223345577888888776652 10 0 001100000
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--CCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 505 EALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD--HDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 505 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
...+.+.+-...|-..+=..|...+++.|+.++|.+.++.+++..|. +-....+|++.+...+.+.++..++.+--+-
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 01111111111122223344555667788888888888888876664 3446667888888888888888887776443
Q ss_pred CCccCCc
Q 004938 583 GILKERA 589 (722)
Q Consensus 583 g~~~~~~ 589 (722)
...+...
T Consensus 325 ~lpkSAt 331 (539)
T PF04184_consen 325 SLPKSAT 331 (539)
T ss_pred cCCchHH
Confidence 3333333
|
The molecular function of this protein is uncertain. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.33 E-value=3.3 Score=36.21 Aligned_cols=85 Identities=15% Similarity=0.173 Sum_probs=44.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChh
Q 004938 121 PPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFD 200 (722)
Q Consensus 121 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 200 (722)
..++..+...+.......+++.+.+.+ ..+...+|.|+..|++.. ..+....++. ..+......+++.+.+.+.++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHH
Confidence 445555555555556666666665554 345556666666666543 2333344431 123333444555555555555
Q ss_pred HHHHHHHHH
Q 004938 201 EVLNLFEEM 209 (722)
Q Consensus 201 ~A~~~~~~m 209 (722)
++.-++..+
T Consensus 87 ~~~~l~~k~ 95 (140)
T smart00299 87 EAVELYKKD 95 (140)
T ss_pred HHHHHHHhh
Confidence 555555554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.32 E-value=3 Score=43.76 Aligned_cols=103 Identities=11% Similarity=0.162 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCC--HHHHHHHHHH
Q 004938 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP-F-APN--VVIWGSLMAA 528 (722)
Q Consensus 453 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-~p~--~~~~~~ll~~ 528 (722)
+-..+..++-+.|..++|.+.|.++.+++.......+...|+..|...+.+.++..++.+-. + -|. ...|+..+--
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 33456677788999999999999998754333345577789999999999999999998873 1 233 3566666555
Q ss_pred HHHcCC---------------HHHHHHHHHHHHccCCCCCch
Q 004938 529 CRVHGE---------------IELAEFAAKQLLQLDPDHDGA 555 (722)
Q Consensus 529 ~~~~g~---------------~~~a~~~~~~~~~~~p~~~~~ 555 (722)
.+..++ ...|.++..++.+.+|..+.+
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 554443 134568899999999886643
|
The molecular function of this protein is uncertain. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.30 E-value=14 Score=43.17 Aligned_cols=54 Identities=22% Similarity=0.182 Sum_probs=30.6
Q ss_pred cCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 004938 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA 361 (722)
Q Consensus 297 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 361 (722)
.+++++|+..+.++. ...|.-.+..--+.|.+.+|+.++ +|+...+..+..+|+
T Consensus 893 L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya 946 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYA 946 (1265)
T ss_pred HHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHH
Confidence 345556655555544 223444455555666666666664 577776666665553
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.67 Score=49.24 Aligned_cols=131 Identities=19% Similarity=0.213 Sum_probs=87.6
Q ss_pred HHHcCCHHHHHHHHH--HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCH
Q 004938 426 FAIHGDARNALIFFN--KMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLL 503 (722)
Q Consensus 426 ~~~~g~~~~A~~~~~--~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 503 (722)
....|+++++.++.+ ++.. .++ ..-...++.-+.+.|..+.|+++-..-.. -.++..+.|++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L 334 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNL 334 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-H
T ss_pred HHHcCChhhhhhhhhhhhhcc-cCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCH
Confidence 345677777766654 1111 111 33467777778888888888877554333 24566788999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 504 REALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 504 ~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
+.|.++.++.. +...|..|......+|+++.|+++|++. .-+..|.-+|...|+.+.-.++.+...++|
T Consensus 335 ~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99998887764 7789999999999999999999999885 356678888888999888777777776665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.26 E-value=1.2 Score=43.40 Aligned_cols=120 Identities=13% Similarity=0.070 Sum_probs=80.0
Q ss_pred HHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHHcCCHH
Q 004938 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGS---LMAACRVHGEIE 536 (722)
Q Consensus 460 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---ll~~~~~~g~~~ 536 (722)
.....|+..+|...|+.... -.+-+...-..|+..|...|+.++|..++..+|.+-...-|.. -+....+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 45567788888888887776 3344456667788888888888888888888864433333333 122222222222
Q ss_pred HHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 537 LAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 537 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
+.. .+++-+..+|++...-..++..|...|+.++|.+.+=.+..+
T Consensus 221 ~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222 233445678998888899999999999999999887766654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.25 E-value=1.2 Score=38.47 Aligned_cols=112 Identities=13% Similarity=0.079 Sum_probs=55.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcC
Q 004938 425 AFAIHGDARNALIFFNKMKDESIDPN---GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRAN 501 (722)
Q Consensus 425 ~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 501 (722)
...+.|++++|++.|+.+... .+.. ...-..++.++.+.+++++|...+++.++-+.-.|+ ..|.....+++.-.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHHH
Confidence 344566666666666666653 1111 234455566666666666666666666654333333 22333333332222
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCC
Q 004938 502 LLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD 553 (722)
Q Consensus 502 ~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 553 (722)
..+..+.-+- +.+ +..+....|...|++++..-|++.
T Consensus 97 ~~~~~~~~~~--~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 97 QDEGSLQSFF--RSD-------------RDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HhhhHHhhhc--ccc-------------cCcHHHHHHHHHHHHHHHHCcCCh
Confidence 1111111110 111 112235678888888888888864
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.23 E-value=2.3 Score=37.20 Aligned_cols=62 Identities=19% Similarity=0.256 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004938 455 IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRA-NLLREALELVETMPFAPNVVIWGSLMAAC 529 (722)
Q Consensus 455 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~p~~~~~~~ll~~~ 529 (722)
..++..|.+.+.++++..++..+.. |...++.+... ++.+.|.+++.+- .+...|..++..+
T Consensus 73 ~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~ 135 (140)
T smart00299 73 EKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKAL 135 (140)
T ss_pred HHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 3345555555555555555544321 22223333333 5555566655552 2444555555444
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.32 Score=46.43 Aligned_cols=100 Identities=15% Similarity=0.169 Sum_probs=78.6
Q ss_pred HHHHHHhcCC--CCCcccHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccC----------
Q 004938 170 DARLMFDKMS--YRDIVPWSVMIDGYFQN-----GLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG---------- 232 (722)
Q Consensus 170 ~A~~~f~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---------- 232 (722)
..++.|...+ ++|-.+|-+.+..+... +..+=....++.|.+-|+.-|..+|+.||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455666665 56777888888777654 556666677889999999999999999998775533
Q ss_pred ------ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCh
Q 004938 233 ------NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCM 269 (722)
Q Consensus 233 ------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 269 (722)
+-+-+..++++|...|+-||..+-..|++++.+.+-.
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2345788999999999999999999999999888764
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.13 E-value=5.7 Score=38.09 Aligned_cols=178 Identities=16% Similarity=0.147 Sum_probs=109.4
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHH
Q 004938 383 GDLRVNNAIIDMYAKCGSLESAREVFERMRRRN------VISWTSMINAFAIHGDARNALIFFNKMKDE-SIDPNGVTFI 455 (722)
Q Consensus 383 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~ 455 (722)
|-...|+.-+. -.+.|++++|.+.|+.+.... ..+.-.++-++.+.+++++|+..+++.... +-.|| .-|.
T Consensus 33 p~~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~ 110 (254)
T COG4105 33 PASELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYA 110 (254)
T ss_pred CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHH
Confidence 33445554444 457899999999999997522 234555667788999999999999998874 22333 3444
Q ss_pred HHHHHHHh---c----CCH---HHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH--H
Q 004938 456 GVLYACSH---A----GLV---DEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIW--G 523 (722)
Q Consensus 456 ~ll~a~~~---~----g~~---~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~--~ 523 (722)
..|.+++. . .+. .+|..-|+.++.++ |.+.. ..+|..-+..+. |.... .
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Y--------------a~dA~~~i~~~~---d~LA~~Em 171 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSRY--------------APDAKARIVKLN---DALAGHEM 171 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCcc--------------hhhHHHHHHHHH---HHHHHHHH
Confidence 44544442 1 222 33444444444432 21111 112222111110 11111 1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCCc---hHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 524 SLMAACRVHGEIELAEFAAKQLLQLDPDHDG---ALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 524 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
.+..-|.+.|.+.-|..-++.+++.-|+.+. .+..+..+|...|..++|.+.-+-+..
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 2445678899999999999999988776554 455778889999999999998877755
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.09 E-value=2.5 Score=44.96 Aligned_cols=101 Identities=16% Similarity=0.158 Sum_probs=38.6
Q ss_pred HHhCCChhHHHHHHH-HHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHH
Q 004938 193 YFQNGLFDEVLNLFE-EMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDM 271 (722)
Q Consensus 193 ~~~~g~~~~A~~~~~-~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 271 (722)
..-+++++++.+..+ .-.-..++ ..-...++..+-+.|..+.|.++-. |+. .-.+...++|+++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDI 336 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHH
T ss_pred HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHH
Confidence 344566666665554 11111111 2335555555556666665555422 221 12334455555555
Q ss_pred HHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhc
Q 004938 272 AKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309 (722)
Q Consensus 272 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 309 (722)
|.++.++.. +...|..|.....++|+++-|++.|.+
T Consensus 337 A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 337 ALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred HHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 555532221 222344444444444444444444433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.5 Score=41.87 Aligned_cols=56 Identities=14% Similarity=0.151 Sum_probs=26.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004938 421 SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASM 477 (722)
Q Consensus 421 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 477 (722)
.++..+...|++++|+.+.+++... -+-|...+..++.++...|+..+|.++|+.+
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444444555555555555555552 1223345555555555555555555555544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.53 Score=45.29 Aligned_cols=91 Identities=18% Similarity=0.205 Sum_probs=51.2
Q ss_pred hcCCHHHHHHHHHHhHhhcCCCCC---cchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCC
Q 004938 463 HAGLVDEGREIFASMTNEYNIPPK---YEHYGCMVDLFGRANLLREALELVETM----PFAPN-VVIWGSLMAACRVHGE 534 (722)
Q Consensus 463 ~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll~~~~~~g~ 534 (722)
..|++.+|.+.|...+++| |-+ ...+--|...+...|++++|...|..+ |..|. +..+--|.......|+
T Consensus 153 ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 3444555555555555422 221 223334555555566666655555544 22232 2455556666677778
Q ss_pred HHHHHHHHHHHHccCCCCCch
Q 004938 535 IELAEFAAKQLLQLDPDHDGA 555 (722)
Q Consensus 535 ~~~a~~~~~~~~~~~p~~~~~ 555 (722)
.++|...++++.+..|+.+.+
T Consensus 231 ~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 231 TDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHHHHHHHHCCCCHHH
Confidence 888888888888877776543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.37 Score=40.34 Aligned_cols=90 Identities=19% Similarity=0.139 Sum_probs=56.3
Q ss_pred HHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC-C-CH---HHHHHHHHHHHHcC
Q 004938 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFA-P-NV---VIWGSLMAACRVHG 533 (722)
Q Consensus 460 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p-~~---~~~~~ll~~~~~~g 533 (722)
+.+..|+++.|++.|..... -.|.....||.-..+|--+|+.++|++-+++. .+. | .. -.|..-...|+..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 45666777777777776664 44455667777777777777777777766665 111 1 11 23333344577788
Q ss_pred CHHHHHHHHHHHHccCCC
Q 004938 534 EIELAEFAAKQLLQLDPD 551 (722)
Q Consensus 534 ~~~~a~~~~~~~~~~~p~ 551 (722)
+.+.|..-|+.+-+++..
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 888888877777666543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.62 E-value=3.1 Score=40.55 Aligned_cols=47 Identities=23% Similarity=0.304 Sum_probs=27.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChHHHHHHHHHHHHcC
Q 004938 384 DLRVNNAIIDMYAKCGSLESAREVFERMRRR-----NVISWTSMINAFAIHG 430 (722)
Q Consensus 384 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g 430 (722)
|...-..+...|...|+.++|.+.+-.+.++ |...-..++..+..-|
T Consensus 235 d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 235 DVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 5556666777777777777777666555442 3334444444444444
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=93.60 E-value=5.2 Score=41.11 Aligned_cols=33 Identities=15% Similarity=0.119 Sum_probs=21.7
Q ss_pred cCCchHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 004938 328 NNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360 (722)
Q Consensus 328 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 360 (722)
.|+.++|++++..+....-.++..||..+...|
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 677777777777755555566666776666554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.50 E-value=2.9 Score=45.10 Aligned_cols=116 Identities=16% Similarity=0.026 Sum_probs=76.3
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-CC-----CCHHHHHHHHHHHHHcCCHHH
Q 004938 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP-FA-----PNVVIWGSLMAACRVHGEIEL 537 (722)
Q Consensus 464 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~-----p~~~~~~~ll~~~~~~g~~~~ 537 (722)
....+.+.++++.+.++ .|.+....-.-...+...|++++|++.|++.- .+ -....+--+...+....++++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45677888888888764 33333333333455667888888888888651 01 122334445666777889999
Q ss_pred HHHHHHHHHccCCCCCchHH-HHHHHhhhCCCc-------chHHHHHHHHHh
Q 004938 538 AEFAAKQLLQLDPDHDGALV-LLSNIYAKDKRW-------QDVGELRKSMKE 581 (722)
Q Consensus 538 a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~-------~~a~~~~~~m~~ 581 (722)
|...+.++.+.+.-....|. ..+-.|...|+. ++|.+++++...
T Consensus 324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99999999987665555554 455566778888 777777776644
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.34 E-value=6.8 Score=37.05 Aligned_cols=199 Identities=13% Similarity=0.127 Sum_probs=99.8
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--hHHHHHHHHHHHHcC
Q 004938 353 MLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN--VISWTSMINAFAIHG 430 (722)
Q Consensus 353 ~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g 430 (722)
|.-...+|....++++|..-+....+. .+.+...|.+ ...++.|.-+.+++.+-+ +..|+--...|..+|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 333444556666777776655554431 1222222211 122344444444444322 224455566777777
Q ss_pred CHHHHHHHHHHHHH--cCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHH
Q 004938 431 DARNALIFFNKMKD--ESIDPNGV--TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREA 506 (722)
Q Consensus 431 ~~~~A~~~~~~m~~--~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 506 (722)
.++-|-..+++.-+ .++.|+.. .|..-+......++...|. +.|......|.+..+++||
T Consensus 106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~----------------el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF----------------ELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH----------------HHHHHhhhHhhhhHHhhHH
Confidence 77766666555432 22444432 1222222222222222222 3344455567777777776
Q ss_pred HHHHHhCC-------CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcc----CCCCCchHHHHHHHhhhCCCcchHHH
Q 004938 507 LELVETMP-------FAPNV-VIWGSLMAACRVHGEIELAEFAAKQLLQL----DPDHDGALVLLSNIYAKDKRWQDVGE 574 (722)
Q Consensus 507 ~~~~~~~~-------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~a~~ 574 (722)
-..+.+-+ --|+. ..+-+.+-.+.-..++..|+..++.--+. .|++..+...|...| ..|+.+++.+
T Consensus 170 a~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~k 248 (308)
T KOG1585|consen 170 ATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKK 248 (308)
T ss_pred HHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHH
Confidence 66655431 11222 23444444555566788888888775543 456666666777665 4667666665
Q ss_pred HH
Q 004938 575 LR 576 (722)
Q Consensus 575 ~~ 576 (722)
+.
T Consensus 249 vl 250 (308)
T KOG1585|consen 249 VL 250 (308)
T ss_pred HH
Confidence 54
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=93.20 E-value=2.7 Score=37.33 Aligned_cols=83 Identities=14% Similarity=0.052 Sum_probs=42.1
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHH
Q 004938 427 AIHGDARNALIFFNKMKDESIDP-NGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLRE 505 (722)
Q Consensus 427 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 505 (722)
.+.|++++|..+|+-+... .| |..-+..|..+|-..+.+++|...|..... -.+.|+..+-.....|...|+.++
T Consensus 48 y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~--l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT--LLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cccCCCCccchHHHHHHHhCCHHH
Confidence 3556666666666555442 22 222344444445555666666666655443 112333334445555556666666
Q ss_pred HHHHHHhC
Q 004938 506 ALELVETM 513 (722)
Q Consensus 506 A~~~~~~~ 513 (722)
|+..|...
T Consensus 124 A~~~f~~a 131 (165)
T PRK15331 124 ARQCFELV 131 (165)
T ss_pred HHHHHHHH
Confidence 66655554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.20 E-value=9.9 Score=37.90 Aligned_cols=20 Identities=10% Similarity=-0.247 Sum_probs=15.1
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 004938 527 AACRVHGEIELAEFAAKQLL 546 (722)
Q Consensus 527 ~~~~~~g~~~~a~~~~~~~~ 546 (722)
..+.+.++++.|...|+-.+
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 34667888999998888654
|
It is also involved in sporulation []. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.44 Score=45.52 Aligned_cols=103 Identities=13% Similarity=0.045 Sum_probs=77.4
Q ss_pred CChHHHHHHhccCC--CCCcchHHHHHHHHHhC-----CCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC------
Q 004938 65 SSLYYALSIFSQIP--APPSRVSNKFIRAISWS-----HRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAE------ 131 (722)
Q Consensus 65 g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~------ 131 (722)
..+-.....|...+ .+|..+|-+++..+... +..+-....++.|.+.|+.-|..+|..||+.+-+..
T Consensus 48 K~Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nv 127 (406)
T KOG3941|consen 48 KSLVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNV 127 (406)
T ss_pred ccccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHH
Confidence 34555667787776 67888999988888653 556666777888999999999999999998775422
Q ss_pred ----------ChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCC
Q 004938 132 ----------GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGK 167 (722)
Q Consensus 132 ----------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 167 (722)
.-.-+..++++|...|+.||..+-..|++++++.+-
T Consensus 128 fQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 FQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 224466778888888888888888888888877654
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.52 Score=42.73 Aligned_cols=89 Identities=18% Similarity=0.145 Sum_probs=68.8
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCC
Q 004938 496 LFGRANLLREALELVETM-PFAPN------VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKR 568 (722)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~-~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 568 (722)
-+.+.|++++|..-|.++ ...|. .+.|..-..+..+.+..+.|+.-..++++++|....+...-+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 345667777777666655 22221 34555556677788999999999999999999888888888999999999
Q ss_pred cchHHHHHHHHHhCCC
Q 004938 569 WQDVGELRKSMKERGI 584 (722)
Q Consensus 569 ~~~a~~~~~~m~~~g~ 584 (722)
+++|.+-++++.+...
T Consensus 184 ~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 184 YEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999999988543
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.75 E-value=36 Score=43.15 Aligned_cols=64 Identities=8% Similarity=0.030 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCC
Q 004938 519 VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGI 584 (722)
Q Consensus 519 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 584 (722)
..+|-.....++..|.++.|....-++.+..+ +..+.-.+......|+-..|..++++..+...
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 46899999999999999999999888888774 46888999999999999999999999886543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.50 E-value=12 Score=37.18 Aligned_cols=80 Identities=13% Similarity=-0.031 Sum_probs=34.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004938 384 DLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHG-DARNALIFFNKMKDESIDPNGVTFIGVLYACS 462 (722)
Q Consensus 384 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 462 (722)
+..+-...+.++++.|+.+....+..-+..+|...-..-+.++.+.+ ....+...+..+.. .+|...-...+.++.
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg 217 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLA 217 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHH
Confidence 44444455555555554332222233333344433333333443332 12344444444443 334444444555555
Q ss_pred hcCC
Q 004938 463 HAGL 466 (722)
Q Consensus 463 ~~g~ 466 (722)
+.|+
T Consensus 218 ~~~~ 221 (280)
T PRK09687 218 LRKD 221 (280)
T ss_pred ccCC
Confidence 5554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.35 E-value=5.5 Score=44.40 Aligned_cols=114 Identities=12% Similarity=0.117 Sum_probs=48.3
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004938 393 DMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGRE 472 (722)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 472 (722)
+-+.+.|++++|...|-+...--.. ..+|.-|....+..+-..+++.+.+.|+.-. .--..|+++|.+.++.++-.+
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~-dhttlLLncYiKlkd~~kL~e 452 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQRIKNLTSYLEALHKKGLANS-DHTTLLLNCYIKLKDVEKLTE 452 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHHHHHHHHHHHHHHHHcccccc-hhHHHHHHHHHHhcchHHHHH
Confidence 3344555666655555443220000 1123334444444445555555555554322 222345555555555555544
Q ss_pred HHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 004938 473 IFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513 (722)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 513 (722)
+.+...+ |.- ..-....+..+.+.+-+++|.-+-.+.
T Consensus 453 fI~~~~~--g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 453 FISKCDK--GEW--FFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHhcCCC--cce--eeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 4432221 110 001223344444555555555554444
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=91.92 E-value=17 Score=37.56 Aligned_cols=149 Identities=10% Similarity=-0.038 Sum_probs=81.9
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhh-cCCCCCcch
Q 004938 414 RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDP---NGVTFIGVLYACSHAGLVDEGREIFASMTNE-YNIPPKYEH 489 (722)
Q Consensus 414 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ 489 (722)
....+|..+...+.+.|+++.|...+.++...+..+ +......-+...-..|+.++|...++...+. ..-..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 445678888888888999999988888887643221 2334444555667778888888888777762 111111111
Q ss_pred HHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHccCCCCCchHHHHHHH
Q 004938 490 YGCMVDLFGRANLLREALEL-VETMPFAPNVVIWGSLMAACRVH------GEIELAEFAAKQLLQLDPDHDGALVLLSNI 562 (722)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 562 (722)
...+...+.. ..+..... ........-...+..+..-+... ++.+.+...|+++.++.|+....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 00000000112333333333344 788999999999999999888777777766
Q ss_pred hh
Q 004938 563 YA 564 (722)
Q Consensus 563 ~~ 564 (722)
+.
T Consensus 302 ~~ 303 (352)
T PF02259_consen 302 ND 303 (352)
T ss_pred HH
Confidence 54
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.75 E-value=0.28 Score=30.52 Aligned_cols=32 Identities=25% Similarity=0.214 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004938 520 VIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551 (722)
Q Consensus 520 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 551 (722)
.+|..+...+...|++++|...++++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35677778888889999999999999888884
|
... |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.67 E-value=1.4 Score=43.34 Aligned_cols=159 Identities=8% Similarity=-0.003 Sum_probs=118.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHH----HHhcCCH
Q 004938 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL----FGRANLL 503 (722)
Q Consensus 428 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~----~~~~g~~ 503 (722)
-.|+..+|...++++.+. .+.|...+.-.=.+|...|+.+.-...++++.. ...++...|.-+=.+ +..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 578889999999999886 566677777778899999999999999998876 445666555544443 4579999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC----CCchHHHHHHHhhhCCCcchHHHHHH
Q 004938 504 REALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD----HDGALVLLSNIYAKDKRWQDVGELRK 577 (722)
Q Consensus 504 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 577 (722)
++|++.-++. .+.| |.-.-.++......+|++.++.+..++--..-.+ -...|...+-.+...+.++.|.++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999987 5554 4445566666777899999999987765432221 12345567777788899999999999
Q ss_pred HHHhCCCccCCc
Q 004938 578 SMKERGILKERA 589 (722)
Q Consensus 578 ~m~~~g~~~~~~ 589 (722)
.-.-+.+.++-+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 876555555544
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.56 E-value=23 Score=38.27 Aligned_cols=129 Identities=10% Similarity=0.056 Sum_probs=75.0
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccH-HHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHH
Q 004938 81 PSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSF-PPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLV 159 (722)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 159 (722)
+...|+.+|.---.....+.+..++..++.. -|..+-| .....-=.+.|..+.+.++|++-+. |++-++..|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 3445777766554444555566666666543 2332221 1111222356777777788877665 3556666666665
Q ss_pred HHHHh-CCCHHHHHHHHhcCCC---C---CcccHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 004938 160 GMYGA-CGKILDARLMFDKMSY---R---DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS 212 (722)
Q Consensus 160 ~~~~~-~g~~~~A~~~f~~m~~---~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 212 (722)
..... .|+.+..+..|+.... . ...-|-..|.--..++++.....+|++.++-
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 54443 4666677777766542 1 2223777777777777778888888777653
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.30 E-value=0.32 Score=30.87 Aligned_cols=26 Identities=27% Similarity=0.151 Sum_probs=16.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004938 522 WGSLMAACRVHGEIELAEFAAKQLLQ 547 (722)
Q Consensus 522 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 547 (722)
|..|...|...|++++|+.+|+++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666666666777777777666443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.22 E-value=0.32 Score=47.66 Aligned_cols=114 Identities=14% Similarity=0.054 Sum_probs=80.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 004938 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGE 534 (722)
Q Consensus 457 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 534 (722)
-.+-|.+.|.+++|+..|...+. -.+-+..++..-..+|.+...+..|+.-.... .+.. -...|.--+.+-...|+
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 35568889999999999998775 33448888888999999999998887666554 2211 12344444555556789
Q ss_pred HHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHH
Q 004938 535 IELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELR 576 (722)
Q Consensus 535 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 576 (722)
.++|.+-++.+++++|++. -|-..|.......++.-+.
T Consensus 181 ~~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~I~~ 218 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNI----ELKKSLARINSLRERKIAT 218 (536)
T ss_pred HHHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhhHHh
Confidence 9999999999999999965 3444455555555554443
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.74 E-value=25 Score=37.17 Aligned_cols=102 Identities=18% Similarity=0.224 Sum_probs=69.0
Q ss_pred CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHH---HhcCCHHHHHHHHHhC--CCCCCHH
Q 004938 447 IDPNGVTF-IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLF---GRANLLREALELVETM--PFAPNVV 520 (722)
Q Consensus 447 ~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~~--~~~p~~~ 520 (722)
..|+..|+ +.++.-+.+.|-+.+|...+..+.. .-||+...|..+|..= ..+| +..+.++++.| .+..|+.
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~ 531 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSD 531 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChH
Confidence 46666665 3456666777888888888888775 5566777777777643 2344 77777777777 3336777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHc-cCCC
Q 004938 521 IWGSLMAACRVHGEIELAEFAAKQLLQ-LDPD 551 (722)
Q Consensus 521 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~ 551 (722)
.|...+.--..+|..+.+-.++.++++ ++|.
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 787777776777777777777766654 4444
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.62 E-value=10 Score=35.22 Aligned_cols=159 Identities=13% Similarity=0.074 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 004938 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495 (722)
Q Consensus 417 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 495 (722)
..||-+.--+...|+++.|.+.|+...+ +.|. ..++..-.-++.-.|++.-|.+=|...-+ -.|+. .|.+|.-
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ---~D~~D-PfR~LWL 173 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ---DDPND-PFRSLWL 173 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHh---cCCCC-hHHHHHH
Confidence 4566666666777777777777777666 3443 12222222234456666666655554433 12221 1222221
Q ss_pred -HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-------CchHHHHHHHhhhCC
Q 004938 496 -LFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH-------DGALVLLSNIYAKDK 567 (722)
Q Consensus 496 -~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g 567 (722)
.-.+.-+..+|..-+.+--...|..-|+..+-.+.--.--+ +.+++++.+-..++ ..+|.-|+.-|...|
T Consensus 174 Yl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 174 YLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred HHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 11233345555544433211335555655544432211111 12333333322222 257888999999999
Q ss_pred CcchHHHHHHHHHhCC
Q 004938 568 RWQDVGELRKSMKERG 583 (722)
Q Consensus 568 ~~~~a~~~~~~m~~~g 583 (722)
..++|..+|+.....+
T Consensus 252 ~~~~A~~LfKLaiann 267 (297)
T COG4785 252 DLDEATALFKLAVANN 267 (297)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 9999999999876644
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=90.58 E-value=9.8 Score=32.32 Aligned_cols=81 Identities=15% Similarity=0.258 Sum_probs=47.1
Q ss_pred cCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004938 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASM 477 (722)
Q Consensus 398 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 477 (722)
||++......+-.+. .+......-++.+...|+-+.-.+++.++... -+|+......+..||.+.|+..++.+++..+
T Consensus 69 C~NlKrVi~C~~~~n-~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 69 CGNLKRVIECYAKRN-KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEA 146 (161)
T ss_dssp -S-THHHHHHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hcchHHHHHHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 444444443333322 22334455566777888888888888877652 3677777788888888888888888888887
Q ss_pred Hhh
Q 004938 478 TNE 480 (722)
Q Consensus 478 ~~~ 480 (722)
-++
T Consensus 147 Cek 149 (161)
T PF09205_consen 147 CEK 149 (161)
T ss_dssp HHT
T ss_pred HHh
Confidence 763
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.57 E-value=8.4 Score=38.60 Aligned_cols=132 Identities=13% Similarity=0.186 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHCCCCCCcccHHHHHHHHHh--c----CChHHHHHHHHHHHHhCC---CCchhhHHHHHHHHHhCCCHH
Q 004938 99 KHALKVFLKMLNEGLTIDRFSFPPILKAIAR--A----EGLLEGMQVHGLGTKLGF---GSDPFVQTGLVGMYGACGKIL 169 (722)
Q Consensus 99 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~----~~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~ 169 (722)
.+.+++++.|.+.|++-+.++|.+..-.... . .....++.+|+.|.+... .++...+..|+.. ...+++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4456677888888888777776654433332 1 134556667777766542 3333444444332 112111
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh--HHHHHHHHHHccCC--hHHHHHHHHHHH
Q 004938 170 DARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEM--VLSKILSACSRAGN--LSYGEAVHEFII 245 (722)
Q Consensus 170 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~--~~~a~~~~~~~~ 245 (722)
. + .+.+..+|+.+.+.|+..+.. ..+.++..+..... ...+..+++.+.
T Consensus 157 ~---l------------------------~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~ 209 (297)
T PF13170_consen 157 E---L------------------------AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALK 209 (297)
T ss_pred H---H------------------------HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 1 1 134455556665555554322 23333333322222 235566666666
Q ss_pred HcCCCCCHhHHHHH
Q 004938 246 DNNVALDAHLQSTL 259 (722)
Q Consensus 246 ~~g~~~~~~~~~~l 259 (722)
+.|+++....|..+
T Consensus 210 ~~~~kik~~~yp~l 223 (297)
T PF13170_consen 210 KNGVKIKYMHYPTL 223 (297)
T ss_pred HcCCccccccccHH
Confidence 66666655555443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.17 E-value=14 Score=33.30 Aligned_cols=33 Identities=12% Similarity=0.249 Sum_probs=21.3
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHccCChHH
Q 004938 204 NLFEEMKMSNVEPDEMVLSKILSACSRAGNLSY 236 (722)
Q Consensus 204 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 236 (722)
+.++.+.+.|+.|+...+..++..+.+.|.+..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 445555566677777777777777777766543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.05 E-value=19 Score=37.25 Aligned_cols=66 Identities=15% Similarity=0.199 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC----CCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD----HDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 518 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
...+|..+...+++.|+++.|...+.++...++. .+.....-+......|+..+|...++...+..
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999886522 45667778899999999999999998887733
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.92 E-value=10 Score=35.74 Aligned_cols=62 Identities=10% Similarity=0.020 Sum_probs=34.3
Q ss_pred HHHHHHHhc-CCHHHHHHHHHhC-----CCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHccCCCCC
Q 004938 492 CMVDLFGRA-NLLREALELVETM-----PFAPNVVIWGSLMAA---CRVHGEIELAEFAAKQLLQLDPDHD 553 (722)
Q Consensus 492 ~li~~~~~~-g~~~~A~~~~~~~-----~~~p~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~p~~~ 553 (722)
.+.+.|... .++++|+..++.. +-+.+...-..++.. -...+++.+|+.+|+++....-+++
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 344444433 5556666666655 112222222233332 3457889999999999887655554
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.87 E-value=0.48 Score=30.09 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=22.4
Q ss_pred hHHHHHHHhhhCCCcchHHHHHHHHH
Q 004938 555 ALVLLSNIYAKDKRWQDVGELRKSMK 580 (722)
Q Consensus 555 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 580 (722)
++..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999999854
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.55 E-value=12 Score=33.30 Aligned_cols=89 Identities=18% Similarity=0.094 Sum_probs=53.4
Q ss_pred HHHhcCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHH
Q 004938 460 ACSHAGLVDEGREIFASMTNEYNIPPK-YEHYGCMVDLFGRANLLREALELVETM-PFAPNVVIWGSLMAACRVHGEIEL 537 (722)
Q Consensus 460 a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~ 537 (722)
.-...++.+++..+++.+.- +.|. .+.-..-...+.+.|++.+|+.+|+++ .-.|....-..|+..|....+-..
T Consensus 19 ~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 34456677777777777653 3443 333334455567788888888888887 233444445566666665444444
Q ss_pred HHHHHHHHHccCCC
Q 004938 538 AEFAAKQLLQLDPD 551 (722)
Q Consensus 538 a~~~~~~~~~~~p~ 551 (722)
=....+++++.+|+
T Consensus 96 Wr~~A~evle~~~d 109 (160)
T PF09613_consen 96 WRRYADEVLESGAD 109 (160)
T ss_pred HHHHHHHHHhcCCC
Confidence 44555666666654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=89.40 E-value=51 Score=38.81 Aligned_cols=24 Identities=13% Similarity=0.123 Sum_probs=12.6
Q ss_pred HHHHHHHHHhCC--CHHHHHHHHhcC
Q 004938 155 QTGLVGMYGACG--KILDARLMFDKM 178 (722)
Q Consensus 155 ~~~li~~~~~~g--~~~~A~~~f~~m 178 (722)
.-.+|..|.+.+ .++.|+....+.
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l 818 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKEL 818 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 345556666655 455555544443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.37 E-value=0.13 Score=45.53 Aligned_cols=47 Identities=11% Similarity=0.121 Sum_probs=19.3
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 004938 230 RAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF 276 (722)
Q Consensus 230 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 276 (722)
+.+.++....+++.+.+.+...+....+.++..|++.+..++..+++
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 19 ERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp TTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred hCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 33344444444444444333334444444444444444444444443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.99 E-value=2.9 Score=40.96 Aligned_cols=76 Identities=16% Similarity=0.288 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 004938 385 LRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKD-----ESIDPNGVTFIG 456 (722)
Q Consensus 385 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 456 (722)
..++..++..+..+|+.+.+.+.++++.. -+...|..++.+|.+.|+...|+..|+++.. .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34567788899999999999999998875 4667999999999999999999999998765 577777665544
Q ss_pred HHHH
Q 004938 457 VLYA 460 (722)
Q Consensus 457 ll~a 460 (722)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.90 E-value=22 Score=33.86 Aligned_cols=20 Identities=15% Similarity=0.208 Sum_probs=9.7
Q ss_pred HHHHHHhcCCHHHHHHHHHh
Q 004938 391 IIDMYAKCGSLESAREVFER 410 (722)
Q Consensus 391 li~~~~~~g~~~~A~~~~~~ 410 (722)
.|-.|.-..++..|.+.++.
T Consensus 196 ~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 196 AILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred HHHHHhhHHHHHHHHHHhcc
Confidence 33334444455555555554
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.39 E-value=7.7 Score=34.62 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=49.2
Q ss_pred hCCCHHHHHHHHhcCCCCCcccHHHHH-----HHHHhCCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHH--HHccCChH
Q 004938 164 ACGKILDARLMFDKMSYRDIVPWSVMI-----DGYFQNGLFDEVLNLFEEMKMSNVEPDEM-VLSKILSA--CSRAGNLS 235 (722)
Q Consensus 164 ~~g~~~~A~~~f~~m~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~--~~~~g~~~ 235 (722)
..+..++|+.-|..+..-+.-+|-.|. ....+.|+...|+..|++.-...-.|-.. -...|=.+ +...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 334455555555555444444443332 23344555555555555554332223222 11111111 22344444
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhc
Q 004938 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV 279 (722)
Q Consensus 236 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 279 (722)
......+-+-..+-+.-...-.+|.-+-.|.|++.+|.+.|..+
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 44443333333332333333444444555555555555555444
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.21 E-value=19 Score=32.38 Aligned_cols=133 Identities=11% Similarity=0.107 Sum_probs=86.9
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcC--CHHHHHHHHhccCCCCcc
Q 004938 239 AVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAG--QVEDARLIFDQMVEKDLI 316 (722)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~f~~~~~~~~~ 316 (722)
+....+.+.+++++...+..+++.+.+.|++..-..++.--.-+|.......+-.+.... -..-|.+.+.++. .
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----~ 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----T 90 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----h
Confidence 445556678899999999999999999999998888876655555444443333222211 1334455555544 2
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHc
Q 004938 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKN 379 (722)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~ 379 (722)
.+..++..+...|++-+|+++.+.... .+......++.+..+.++...--.+++...+.
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466677888899999999998877532 22233455666766677666666666655543
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.14 E-value=26 Score=33.76 Aligned_cols=218 Identities=11% Similarity=0.186 Sum_probs=117.0
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHh---CCCC--CChhhHHHHHHHHHccCCchHHHHHHHHHHHc-----CCCCChhHHH
Q 004938 320 AMISGYAENNHPQEALKLFNEMQV---CGMK--PDKVTMLSVISACAHLGVLDQAQRIHLYIDKN-----AFGGDLRVNN 389 (722)
Q Consensus 320 ~li~~~~~~g~~~~A~~~~~~m~~---~g~~--p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~-----~~~~~~~~~~ 389 (722)
.+|..+.+.|++++.+..|.+|+. ..+. -+..+.++++.-.+...+.+.-..+++.-++. +-..-..+-+
T Consensus 70 QmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNt 149 (440)
T KOG1464|consen 70 QMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNT 149 (440)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccc
Confidence 345555666666666666665532 1111 12345566665555555555555555433221 1111122334
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC--------C-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004938 390 AIIDMYAKCGSLESAREVFERMRR--------R-------NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454 (722)
Q Consensus 390 ~li~~~~~~g~~~~A~~~~~~~~~--------~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 454 (722)
.|...|...|++..-.+++.++.. . =...|..-|..|....+-.....+|++.+.-.-.......
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 566777777777777777776642 1 1246777788888888877778888877653222222334
Q ss_pred HHHHHHHH-----hcCCHHHHHHHHHHhHhhcCCCCCcc-----hHHHHHHHHHhcCCHHHHHHHHHh--C-CC--CCCH
Q 004938 455 IGVLYACS-----HAGLVDEGREIFASMTNEYNIPPKYE-----HYGCMVDLFGRANLLREALELVET--M-PF--APNV 519 (722)
Q Consensus 455 ~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~--~-~~--~p~~ 519 (722)
..+++-|. +.|.+++|..-|-++.+.|.-.-++. -|-.|.+++.+.|- .-|+. + |. .|..
T Consensus 230 mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~i-----NPFDsQEAKPyKNdPEI 304 (440)
T KOG1464|consen 230 MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKPYKNDPEI 304 (440)
T ss_pred HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCC-----CCCcccccCCCCCCHHH
Confidence 45555553 56888887755544444343322222 24556667766651 11111 1 33 3445
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 004938 520 VIWGSLMAACRVHGEIELAEFAAK 543 (722)
Q Consensus 520 ~~~~~ll~~~~~~g~~~~a~~~~~ 543 (722)
.....|+.+|..+ ++.+-+++++
T Consensus 305 lAMTnlv~aYQ~N-dI~eFE~Il~ 327 (440)
T KOG1464|consen 305 LAMTNLVAAYQNN-DIIEFERILK 327 (440)
T ss_pred HHHHHHHHHHhcc-cHHHHHHHHH
Confidence 6778888888654 4444444433
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.81 E-value=50 Score=36.71 Aligned_cols=246 Identities=11% Similarity=0.074 Sum_probs=114.1
Q ss_pred hcCCchHHHHHHHHHHh-------CCCCCChhhHHHHHHHHHccC-----CchHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 004938 327 ENNHPQEALKLFNEMQV-------CGMKPDKVTMLSVISACAHLG-----VLDQAQRIHLYIDKNAFGGDLRVNNAIIDM 394 (722)
Q Consensus 327 ~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~~~~~~g-----~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 394 (722)
...+.+.|+.+|+.+.+ .| +......+..+|.+.. +.+.|..++....+.|. |+....-..+..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYE 336 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 34455555555555544 33 2223344444444432 34446666666555552 222222111111
Q ss_pred HHh-cCCHHHHHHHHHhcCC-CChHHHHHHHHHHH----HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 004938 395 YAK-CGSLESAREVFERMRR-RNVISWTSMINAFA----IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVD 468 (722)
Q Consensus 395 ~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 468 (722)
... ..+...|.+.|....+ -.+.+.-.+...|. ...+...|..++++..+.| .|-..--...+..+.. +.++
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~ 414 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYD 414 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cccc
Confidence 111 1245566666665543 22222222222221 2235666777777666665 3332222222233333 4444
Q ss_pred HHHHHHHHhHhhcCCCCCcchHHHHHHHH-----Hh--cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHH
Q 004938 469 EGREIFASMTNEYNIPPKYEHYGCMVDLF-----GR--ANLLREALELVETMPFAPNVVIWGSLMAACRV----HGEIEL 537 (722)
Q Consensus 469 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~-----~~--~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~ 537 (722)
.+.-.+..+.. .+.+.....-..+.+.. .+ ....+.+..++.+....-+......|...|.. ..+.+.
T Consensus 415 ~~~~~~~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~ 493 (552)
T KOG1550|consen 415 TALALYLYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEK 493 (552)
T ss_pred HHHHHHHHHHH-hhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHH
Confidence 44444444333 12221111111111111 01 22455566666666444455555555554433 236788
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHhhhC-C--CcchHHHHHHHHHhC
Q 004938 538 AEFAAKQLLQLDPDHDGALVLLSNIYAKD-K--RWQDVGELRKSMKER 582 (722)
Q Consensus 538 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~a~~~~~~m~~~ 582 (722)
|...|.++.+.. .....+++.++..- | .+..|.++++...+.
T Consensus 494 a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 494 AAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 888888877666 55667777776542 1 257777777776654
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=86.74 E-value=38 Score=34.23 Aligned_cols=162 Identities=12% Similarity=0.035 Sum_probs=83.4
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHh-CCCCC---ChhhHHHHHHHHHccCCchHHHHHHHHHHHcC-----CCCChhH
Q 004938 317 CWSAMISGYAENNHPQEALKLFNEMQV-CGMKP---DKVTMLSVISACAHLGVLDQAQRIHLYIDKNA-----FGGDLRV 387 (722)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p---~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~-----~~~~~~~ 387 (722)
+|-.+..++-+..++.+++.+-.--.. .|..| -.....++..+....+.++++.+.|+.+.+.. -.....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344455555555555555554333221 12222 11223345556666667777777777665421 1123567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC-------CChH------HHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCC
Q 004938 388 NNAIIDMYAKCGSLESAREVFERMRR-------RNVI------SWTSMINAFAIHGDARNALIFFNKMKD----ESIDPN 450 (722)
Q Consensus 388 ~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~ 450 (722)
+.+|...|.+..++++|.-+..+..+ .|.. +.-.|.-++...|....|.+.-++..+ .|-+|-
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 77788888888777776654433221 2221 222334456666766666666665433 332222
Q ss_pred H-HHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004938 451 G-VTFIGVLYACSHAGLVDEGREIFASMT 478 (722)
Q Consensus 451 ~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 478 (722)
. .....+...|...|+.+.|+.-|+.+.
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 1 234445556666777777666665543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.72 E-value=1.6 Score=26.99 Aligned_cols=32 Identities=25% Similarity=0.521 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 004938 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPN 450 (722)
Q Consensus 417 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 450 (722)
.+|..+...|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3566777777777777777777777776 3443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.72 E-value=2.3 Score=28.37 Aligned_cols=32 Identities=19% Similarity=0.431 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 004938 418 SWTSMINAFAIHGDARNALIFFNKMKDESIDPNG 451 (722)
Q Consensus 418 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 451 (722)
+|..+...|...|++++|+++|++.++. .|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL--DPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCC
Confidence 4556666666677777777777766663 4543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=86.63 E-value=36 Score=33.88 Aligned_cols=23 Identities=13% Similarity=-0.045 Sum_probs=17.5
Q ss_pred HHHHHhhhCCCcchHHHHHHHHH
Q 004938 558 LLSNIYAKDKRWQDVGELRKSMK 580 (722)
Q Consensus 558 ~l~~~~~~~g~~~~a~~~~~~m~ 580 (722)
.-+....+.++|++|.+.++...
T Consensus 251 ~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 251 NKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHH
Confidence 44666778899999999887543
|
It is also involved in sporulation []. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=86.39 E-value=37 Score=33.79 Aligned_cols=118 Identities=11% Similarity=0.083 Sum_probs=46.5
Q ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCCh----hHHHHHHHHHHHCCCCCCHhHHHHHH
Q 004938 150 SDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLF----DEVLNLFEEMKMSNVEPDEMVLSKIL 225 (722)
Q Consensus 150 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll 225 (722)
+|..+....+..+...|..+-...+..-+..+|...-...+.++.+-|+. .+++..+..+... .|+...-...+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 34444444444444444322222222222233444444444555555542 3455555554222 23444444444
Q ss_pred HHHHccCChHH--HHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCh
Q 004938 226 SACSRAGNLSY--GEAVHEFIIDNNVALDAHLQSTLITMYANCGCM 269 (722)
Q Consensus 226 ~~~~~~g~~~~--a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 269 (722)
.++...+.... ...+...+...-..++..+-...+.++.+.|+.
T Consensus 113 ~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~ 158 (280)
T PRK09687 113 NATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDE 158 (280)
T ss_pred HHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH
Confidence 44443321110 011112221211233555555555556555553
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=85.85 E-value=3.8 Score=36.26 Aligned_cols=52 Identities=21% Similarity=0.236 Sum_probs=30.6
Q ss_pred HcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
..++.+.++.++.-+.-+.|+.+..-..-+.++...|+|.+|..+++.+.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 4455666666666666666665555555555666666666666666665444
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.80 E-value=32 Score=32.53 Aligned_cols=90 Identities=13% Similarity=0.282 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHHhHhhcCCC-CCcchHHHHHH---HHHhcCCHHHHHHHHHhC---CCCCCHHHHHH---HHHH--HHH-
Q 004938 465 GLVDEGREIFASMTNEYNIP-PKYEHYGCMVD---LFGRANLLREALELVETM---PFAPNVVIWGS---LMAA--CRV- 531 (722)
Q Consensus 465 g~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~---~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~---ll~~--~~~- 531 (722)
.++++|+..|+..-+-|... .+...-.|++. .-+..+++.+|+++|++. ....+..-|.. ++.+ |.-
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 45566666666655432222 22222223333 335678899999998887 23333333422 2222 332
Q ss_pred cCCHHHHHHHHHHHHccCCCCCc
Q 004938 532 HGEIELAEFAAKQLLQLDPDHDG 554 (722)
Q Consensus 532 ~g~~~~a~~~~~~~~~~~p~~~~ 554 (722)
..+.-.+...+++..+++|.-..
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred cccHHHHHHHHHHHHhcCCcccc
Confidence 36777788899999999997544
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=85.67 E-value=69 Score=36.18 Aligned_cols=150 Identities=15% Similarity=0.056 Sum_probs=71.3
Q ss_pred hcCChHHHHHHHHHHHHhCCCCchh-----hHHHHHHHHHhCCCHHHHHHHHhcCCC----CCcccHHHH-----HHHHH
Q 004938 129 RAEGLLEGMQVHGLGTKLGFGSDPF-----VQTGLVGMYGACGKILDARLMFDKMSY----RDIVPWSVM-----IDGYF 194 (722)
Q Consensus 129 ~~~~~~~a~~~~~~~~~~g~~~~~~-----~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~l-----i~~~~ 194 (722)
...+++.|+..+++.....-.++.. ....++..|.+.+... |.+..++..+ .....|... +..+.
T Consensus 72 eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~ 150 (608)
T PF10345_consen 72 ETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLAL 150 (608)
T ss_pred HcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 4456666666666543332121111 1223445555554444 6655554321 111222222 22222
Q ss_pred hCCChhHHHHHHHHHHHCC---CCCCHhHHHHHHHHHH--ccCChHHHHHHHHHHHHcCC---------CCCHhHHHHHH
Q 004938 195 QNGLFDEVLNLFEEMKMSN---VEPDEMVLSKILSACS--RAGNLSYGEAVHEFIIDNNV---------ALDAHLQSTLI 260 (722)
Q Consensus 195 ~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~~~~--~~g~~~~a~~~~~~~~~~g~---------~~~~~~~~~li 260 (722)
..+++..|++.++.....- ..|-...+..++.+.. ..+..+.+.+....+..... .|...++..++
T Consensus 151 ~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll 230 (608)
T PF10345_consen 151 QHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLL 230 (608)
T ss_pred hcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHH
Confidence 3367777888777764322 2333444455555543 33545555555555533211 23445566665
Q ss_pred HHH--HhcCChHHHHHHHHhc
Q 004938 261 TMY--ANCGCMDMAKGLFDKV 279 (722)
Q Consensus 261 ~~~--~~~g~~~~A~~~~~~~ 279 (722)
+.+ ...|+++.+...++++
T Consensus 231 ~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 231 DLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 544 4566766666665554
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.57 E-value=3 Score=41.23 Aligned_cols=86 Identities=19% Similarity=0.141 Sum_probs=61.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcC
Q 004938 423 INAFAIHGDARNALIFFNKMKDESIDP-NGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRAN 501 (722)
Q Consensus 423 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 501 (722)
.+-|.++|.+++|+..|.+.+. +.| |.+++..-..+|.+...+..|..=...+.. .-...+.+|.|.|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---------Ld~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---------LDKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---------hhHHHHHHHHHHH
Confidence 5779999999999999998877 567 889999999999999888877766665543 1123456666655
Q ss_pred C-------HHHHHHHHHhC-CCCCCH
Q 004938 502 L-------LREALELVETM-PFAPNV 519 (722)
Q Consensus 502 ~-------~~~A~~~~~~~-~~~p~~ 519 (722)
. ..||.+-++.. .++|+.
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 4 44444444443 466763
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.22 E-value=31 Score=31.75 Aligned_cols=91 Identities=14% Similarity=0.074 Sum_probs=62.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHH-----HHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHH
Q 004938 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC-----MVDLFGRANLLREALELVETMPFAP-NVVIWGSLMAACRV 531 (722)
Q Consensus 458 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-----li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~ 531 (722)
...+...+++++|...++.... .|..+.+.. |.......|.+++|+..++...-+. ....-..-.+++..
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~ 171 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHH
Confidence 3467778888888888876653 133334443 3455677899999999998763111 12223344567889
Q ss_pred cCCHHHHHHHHHHHHccCCCC
Q 004938 532 HGEIELAEFAAKQLLQLDPDH 552 (722)
Q Consensus 532 ~g~~~~a~~~~~~~~~~~p~~ 552 (722)
.|+-++|+..|+++++.++++
T Consensus 172 kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 172 KGDKQEARAAYEKALESDASP 192 (207)
T ss_pred cCchHHHHHHHHHHHHccCCh
Confidence 999999999999999887543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=84.96 E-value=4.4 Score=35.26 Aligned_cols=54 Identities=7% Similarity=0.028 Sum_probs=42.9
Q ss_pred HcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCC
Q 004938 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGI 584 (722)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 584 (722)
..++.+.++.++..+.-+.|+.+..-..-+.++...|+|.||.++++.+.+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 477888888888888888888887777778888888888888888888776653
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.50 E-value=9.2 Score=37.60 Aligned_cols=97 Identities=10% Similarity=0.179 Sum_probs=72.2
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-C--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 004938 380 AFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR-R--------NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN 450 (722)
Q Consensus 380 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 450 (722)
|.+....+...++..-....+++++...+-++.. + ...+|-.++.. -++++++.++..=+.-|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk----y~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK----YDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc----cChHHHHHHHhCcchhccccc
Confidence 4445555566666666667788888887777653 2 23444444433 367799999988889999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHhh
Q 004938 451 GVTFIGVLYACSHAGLVDEGREIFASMTNE 480 (722)
Q Consensus 451 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 480 (722)
..++..++..+.+.+++.+|.++.-.|...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999998887777653
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=84.40 E-value=61 Score=34.49 Aligned_cols=167 Identities=11% Similarity=0.085 Sum_probs=103.4
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004938 382 GGDLRVNNAIIDMYAKCGSLESAREVFERMRR--RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459 (722)
Q Consensus 382 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 459 (722)
..|....-++++.++..-.++-.+.+..+|.. .+-..|-.++..|..+ ..+.-..+|+++.+ ..-|.+.+..-+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve--~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE--YDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH--hcchhHHHHHHHH
Confidence 34445556677777777777777777777764 5566777888888877 55677788888777 3455555555555
Q ss_pred HHHhcCCHHHHHHHHHHhHhhcCCCCC------cchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 004938 460 ACSHAGLVDEGREIFASMTNEYNIPPK------YEHYGCMVDLFGRANLLREALELVETM----PFAPNVVIWGSLMAAC 529 (722)
Q Consensus 460 a~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~ 529 (722)
-+...++.+.+..+|..+..+ +-|. .+.|..|+..- ..+.+..+.+..++ +...-.+.+.-+-.-|
T Consensus 140 ~~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 555557788888888877753 3331 12344444322 23444445554444 2222344555555666
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCCch
Q 004938 530 RVHGEIELAEFAAKQLLQLDPDHDGA 555 (722)
Q Consensus 530 ~~~g~~~~a~~~~~~~~~~~p~~~~~ 555 (722)
....|+++|++++..+++.+..+.-+
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~a 241 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWA 241 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhH
Confidence 77778888888888887776655433
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=84.16 E-value=45 Score=33.49 Aligned_cols=117 Identities=11% Similarity=0.170 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHhHhhcCCCCC--cchHHHHHHHHHhcCCH
Q 004938 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSH--A----GLVDEGREIFASMTNEYNIPPK--YEHYGCMVDLFGRANLL 503 (722)
Q Consensus 432 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~----g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~ 503 (722)
.++.+.+++.|.+.|++-+..+|.+....... . .....+..+|+.|++++.+-.. ...+..|+.. +.+..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556788889999999888777664433332 2 2356788999999997765433 3344444322 44443
Q ss_pred HH----HHHHHHhC---CCCC-CHHHHHHHHHHHHHc-CC--HHHHHHHHHHHHccCC
Q 004938 504 RE----ALELVETM---PFAP-NVVIWGSLMAACRVH-GE--IELAEFAAKQLLQLDP 550 (722)
Q Consensus 504 ~~----A~~~~~~~---~~~p-~~~~~~~ll~~~~~~-g~--~~~a~~~~~~~~~~~p 550 (722)
++ ++.+++.+ ++.. |..-+.+-+-++... .+ +.++..+++.+.+.+-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~ 213 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGV 213 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCC
Confidence 33 33344333 4443 333333333333221 11 4466666776666543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.12 E-value=31 Score=30.97 Aligned_cols=122 Identities=15% Similarity=0.107 Sum_probs=79.6
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHH--HHHHHhcCC
Q 004938 426 FAIHGDARNALIFFNKMKDESIDPNGV-TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCM--VDLFGRANL 502 (722)
Q Consensus 426 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~g~ 502 (722)
+++.+..++|+.-|.++.+.|...-.+ ............|+...|...|+++-.+..+|.-..-..-| .-++...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 356777888888888888776543322 22333445677888888888888887653333222111222 223456888
Q ss_pred HHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004938 503 LREALELVETMPFAPN---VVIWGSLMAACRVHGEIELAEFAAKQLLQ 547 (722)
Q Consensus 503 ~~~A~~~~~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 547 (722)
+++...-++.+..+.+ ...-..|.-+-.+.|++..|...|+++..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8888888877732222 23456677777889999999999998876
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=83.79 E-value=21 Score=32.67 Aligned_cols=55 Identities=24% Similarity=0.326 Sum_probs=24.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004938 388 NNAIIDMYAKCGSLESAREVFERMRRRN------VISWTSMINAFAIHGDARNALIFFNKM 442 (722)
Q Consensus 388 ~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m 442 (722)
+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......+++..+.....+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444455555555555555555444321 123333444444444444444444433
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.78 E-value=4.5 Score=39.68 Aligned_cols=63 Identities=19% Similarity=0.199 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 520 VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 520 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
.++..++..+...|+++.+...++++++.+|-+...|..+..+|.+.|+...|+..++.+.+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 345556667777778888888888888888888788888888888888888888888877653
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=83.75 E-value=59 Score=36.61 Aligned_cols=40 Identities=13% Similarity=0.163 Sum_probs=21.6
Q ss_pred HHHHHHHhCCCHHHHHHHHhcCC---CCCcccHHHHHHHHHhC
Q 004938 157 GLVGMYGACGKILDARLMFDKMS---YRDIVPWSVMIDGYFQN 196 (722)
Q Consensus 157 ~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~ 196 (722)
++|-.+.|+|++++|.++..+.. .+....+-..+..|+.+
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 45566667777777777773322 22334455555665554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=83.44 E-value=25 Score=30.70 Aligned_cols=43 Identities=14% Similarity=0.082 Sum_probs=22.2
Q ss_pred HHHhCCCHHHHHHHHhcCCCCC-cccHHHHHHHHHhCCChhHHH
Q 004938 161 MYGACGKILDARLMFDKMSYRD-IVPWSVMIDGYFQNGLFDEVL 203 (722)
Q Consensus 161 ~~~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~g~~~~A~ 203 (722)
.+...|++++|.++|+++.+.. ..+|..-+.++|-.-.-+..+
T Consensus 53 l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~W 96 (153)
T TIGR02561 53 LLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEW 96 (153)
T ss_pred HHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHH
Confidence 3445666666666666666543 224554444444443333333
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.42 E-value=2.6 Score=27.39 Aligned_cols=28 Identities=25% Similarity=0.210 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004938 520 VIWGSLMAACRVHGEIELAEFAAKQLLQ 547 (722)
Q Consensus 520 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 547 (722)
.+++.|...|...|++++|+.+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455666666666666666666666654
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=83.40 E-value=2 Score=26.19 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=18.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004938 525 LMAACRVHGEIELAEFAAKQLLQLDPD 551 (722)
Q Consensus 525 ll~~~~~~g~~~~a~~~~~~~~~~~p~ 551 (722)
+...+...|+.++|...++++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 445566667777777777777776665
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.32 E-value=48 Score=32.51 Aligned_cols=59 Identities=19% Similarity=0.013 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 523 GSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 523 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
+.....|...|.+.+|..+.++++.++|-+...+..|..+|+..|+--.|.+-++.+.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 33445788999999999999999999999999999999999999999999988888854
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=83.19 E-value=87 Score=35.37 Aligned_cols=195 Identities=11% Similarity=0.041 Sum_probs=107.1
Q ss_pred CCchhHHHHHHHhccCCCCCCCChHHHHHHhccCCCCCcchHHHHHHHHH-hCCCchHHHHHHHHHHHCCCCCCcc----
Q 004938 44 SQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAIS-WSHRPKHALKVFLKMLNEGLTIDRF---- 118 (722)
Q Consensus 44 ~~~~~~~~~li~~~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~g~~p~~~---- 118 (722)
+....-|..||.+-.+ | ++.+.+-+.-.|.....++-.+...+. ...++++|...+++....--+++-.
T Consensus 27 ~~~l~~Y~kLI~~ai~--C----L~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~ 100 (608)
T PF10345_consen 27 EEQLKQYYKLIATAIK--C----LEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKF 100 (608)
T ss_pred hhhHHHHHHHHHHHHH--H----HHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHH
Confidence 4566777788876555 4 333332222122234455666666665 6778999999998775433222221
Q ss_pred -cHHHHHHHHHhcCChHHHHHHHHHHHHhC----CCCchhhHHHH-HHHHHhCCCHHHHHHHHhcCCC-----CCc--cc
Q 004938 119 -SFPPILKAIARAEGLLEGMQVHGLGTKLG----FGSDPFVQTGL-VGMYGACGKILDARLMFDKMSY-----RDI--VP 185 (722)
Q Consensus 119 -~~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~~~~~~~~~l-i~~~~~~g~~~~A~~~f~~m~~-----~~~--~~ 185 (722)
.-..+++.+.+.+... |+...+..++.- ..+-...+.-+ +..+...++...|.+.++.+.. .|. ..
T Consensus 101 ~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v 179 (608)
T PF10345_consen 101 RCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFV 179 (608)
T ss_pred HHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHH
Confidence 1123345455555444 888877766542 12223333333 3333334788889888877642 122 22
Q ss_pred HHHHHHHH--HhCCChhHHHHHHHHHHHCCC---------CCCHhHHHHHHHHHH--ccCChHHHHHHHHHHH
Q 004938 186 WSVMIDGY--FQNGLFDEVLNLFEEMKMSNV---------EPDEMVLSKILSACS--RAGNLSYGEAVHEFII 245 (722)
Q Consensus 186 ~~~li~~~--~~~g~~~~A~~~~~~m~~~g~---------~p~~~t~~~ll~~~~--~~g~~~~a~~~~~~~~ 245 (722)
.-.++.+. .+.+..+++++.++++..... .|-..+|..++..++ ..|+++.+.+.+..+.
T Consensus 180 ~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 180 LASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333333 345667788888877733221 345567777777665 5577667666655543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=82.80 E-value=17 Score=29.13 Aligned_cols=60 Identities=18% Similarity=0.217 Sum_probs=38.8
Q ss_pred HHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHH
Q 004938 292 SGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTML 354 (722)
Q Consensus 292 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 354 (722)
..+...|++++|..+.+.+.-||...|-+|.. .+.|..+++...+.+|..+| .|...+|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 34555666667766677777777777766654 35666676777777777666 45444443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=82.77 E-value=13 Score=33.98 Aligned_cols=97 Identities=13% Similarity=0.143 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHH--H
Q 004938 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV--TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG--C 492 (722)
Q Consensus 417 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~ 492 (722)
..+..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...+++..+.....++..-.....|...-+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 466778888999999999999999988876566554 577788888888999888888877765211111111111 1
Q ss_pred HHH--HHHhcCCHHHHHHHHHhC
Q 004938 493 MVD--LFGRANLLREALELVETM 513 (722)
Q Consensus 493 li~--~~~~~g~~~~A~~~~~~~ 513 (722)
... .+...|++.+|-+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 111 224578899988888776
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.44 E-value=5.4 Score=39.24 Aligned_cols=62 Identities=26% Similarity=0.165 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 521 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
..+.|-.+|.+.++++.|..+.+.++.+.|+++.-+.--+-+|.+.|.+..|..-++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 45677778999999999999999999999999988888999999999999999988888764
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=82.32 E-value=18 Score=29.10 Aligned_cols=61 Identities=16% Similarity=0.237 Sum_probs=45.8
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004938 393 DMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456 (722)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 456 (722)
..+...|++++|..+.+.+.-||...|-++-.. +.|..+++..-+.+|...| .|....|..
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 456678999999999998888999999887653 6677777777777777765 555555543
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=81.96 E-value=3.4 Score=25.31 Aligned_cols=27 Identities=22% Similarity=0.476 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004938 418 SWTSMINAFAIHGDARNALIFFNKMKD 444 (722)
Q Consensus 418 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 444 (722)
.|..+...|...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666777777777777777665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=81.49 E-value=3.4 Score=24.21 Aligned_cols=31 Identities=26% Similarity=0.187 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004938 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551 (722)
Q Consensus 521 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 551 (722)
.|..+...+...|+++.|...+++.++..|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555666677777777777777777777664
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=81.18 E-value=3.4 Score=28.97 Aligned_cols=33 Identities=30% Similarity=0.323 Sum_probs=26.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCCchH
Q 004938 524 SLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL 556 (722)
Q Consensus 524 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 556 (722)
.+.-++.+.|++++|....+.+++.+|++..+.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 355678999999999999999999999986443
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.86 E-value=33 Score=33.06 Aligned_cols=176 Identities=8% Similarity=0.101 Sum_probs=100.1
Q ss_pred CCHHHHHHHHHhcCC----C---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCC--CCHHHHHHHHHHHHhcCC
Q 004938 399 GSLESAREVFERMRR----R---NVISWTSMINAFAIHGDARNALIFFNKMKD---ESID--PNGVTFIGVLYACSHAGL 466 (722)
Q Consensus 399 g~~~~A~~~~~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~--p~~~t~~~ll~a~~~~g~ 466 (722)
.++++|..-|++..+ + .......||..+.+.|++++.++.|.+|.. ..+. -+..+.++++...+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 456677777766543 1 223455667777788888888888877754 1122 234466777776666655
Q ss_pred HHHHHHHHHHhHhhcC----CCCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CC-----CCC-------HHHHHHHHHH
Q 004938 467 VDEGREIFASMTNEYN----IPPKYEHYGCMVDLFGRANLLREALELVETM--PF-----APN-------VVIWGSLMAA 528 (722)
Q Consensus 467 ~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~-----~p~-------~~~~~~ll~~ 528 (722)
.+--.++++.-..... -..-..+-..|...|...|.+.+-.++++++ .. ..| ..+|..-+..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 5555555443332111 1112233356777777777777777777665 00 111 2355555666
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCCchH-HHH-----HHHhhhCCCcchHHH
Q 004938 529 CRVHGEIELAEFAAKQLLQLDPDHDGAL-VLL-----SNIYAKDKRWQDVGE 574 (722)
Q Consensus 529 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~-~~l-----~~~~~~~g~~~~a~~ 574 (722)
|-.+++-..-..+|++++....--|... ... +.+..+.|.|++|..
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 7777777888888888876543222111 111 234456677887764
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=80.65 E-value=24 Score=36.91 Aligned_cols=127 Identities=17% Similarity=0.218 Sum_probs=75.9
Q ss_pred HHHHHcCCHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCC
Q 004938 424 NAFAIHGDARNALI-FFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL 502 (722)
Q Consensus 424 ~~~~~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 502 (722)
.--...|+...|-+ ++.-+....-.|+.+-..+.+ ..+.|+++.+.+.+..... -+.....+..+++....+.|+
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhh
Confidence 33345667665544 444444443455554444433 5677888888777776654 344555666777777777788
Q ss_pred HHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCc
Q 004938 503 LREALELVETM-PFA-PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554 (722)
Q Consensus 503 ~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 554 (722)
+++|..+-..| +.+ -++.+...........|-++++.-.+++++.++|....
T Consensus 373 ~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~ 426 (831)
T PRK15180 373 WREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQS 426 (831)
T ss_pred HHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcc
Confidence 88887777766 211 13333333344455667777777777777777765443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=80.50 E-value=1.2 Score=39.27 Aligned_cols=84 Identities=13% Similarity=0.131 Sum_probs=55.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHH
Q 004938 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEV 202 (722)
Q Consensus 123 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 202 (722)
+++.+.+.+.+.....+++.+.+.+...+....+.|+..|++.++.+...++++.... .....++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4556666677777777777777766566777888888888888777777777763322 3345566666666766666
Q ss_pred HHHHHHH
Q 004938 203 LNLFEEM 209 (722)
Q Consensus 203 ~~~~~~m 209 (722)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 6666654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 71.4 bits (173), Expect = 7e-13
Identities = 23/221 (10%), Positives = 66/221 (29%), Gaps = 8/221 (3%)
Query: 322 ISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI-HLYIDKNA 380
+ + + + +L+ C L A + ++ +
Sbjct: 99 LQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQ 158
Query: 381 FGG--DLRVNNAIIDMYAKCGSLESAREVFERMRRR----NVISWTSMINAFAIHG-DAR 433
L + NA++ +A+ G+ + V ++ +++S+ + + DA
Sbjct: 159 KRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAG 218
Query: 434 NALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCM 493
+M E + + +L A ++ ++ + + +PP +
Sbjct: 219 TIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLL 278
Query: 494 VDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
D++ + + + + A RV
Sbjct: 279 RDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVV 319
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 68.3 bits (165), Expect = 5e-12
Identities = 23/195 (11%), Positives = 58/195 (29%), Gaps = 7/195 (3%)
Query: 332 QEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI 391
Q A L + + P + + ++ LD Q + G + A
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 392 IDMYAKCGSLESAREVFERMRRR-------NVISWTSMINAFAIHGDARNALIFFNKMKD 444
L A + + + + +++ +A G + + +KD
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 445 ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR 504
+ P+ +++ L E ++ + + ++ RA +L+
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253
Query: 505 EALELVETMPFAPNV 519
++ T P +
Sbjct: 254 AVHKVKPTFSLPPQL 268
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 50.2 bits (118), Expect = 3e-06
Identities = 14/132 (10%), Positives = 41/132 (31%), Gaps = 8/132 (6%)
Query: 289 AMVSGYSRAGQVEDARLIFDQMVEK-------DLICWSAMISGYAENNHPQEALKLFNEM 341
A Q+ A + + L ++A++ G+A +E + + +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 342 QVCGMKPDKVTMLSVISACAHLGVLDQA-QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
+ G+ PD ++ + + +R + + ++ +
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV 251
Query: 401 LESAREVFERMR 412
L++ +V
Sbjct: 252 LKAVHKVKPTFS 263
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 46.3 bits (108), Expect = 4e-05
Identities = 23/231 (9%), Positives = 63/231 (27%), Gaps = 8/231 (3%)
Query: 119 SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM 178
+L+ L G ++ ++ A +
Sbjct: 94 QLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVH 153
Query: 179 SYR-------DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRA 231
+ + ++ ++ G+ + G F E++ + +K + + PD + + L R
Sbjct: 154 HGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQ 213
Query: 232 GNLS-YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
+ E E + + L A + L++ + + L +
Sbjct: 214 DQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVN 273
Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM 341
S R +D R+ + ++ + + +
Sbjct: 274 TSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKP 324
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.0 bits (165), Expect = 8e-12
Identities = 82/604 (13%), Positives = 187/604 (30%), Gaps = 148/604 (24%)
Query: 177 KMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNL-- 234
+ Y+DI+ V D + N +V ++ + + +S E D +++SK A S L
Sbjct: 15 QYQYKDILS--VFEDAFVDNFDCKDVQDMPKSI-LSKEEIDHIIMSK--DAVSGTLRLFW 69
Query: 235 ---SYGE-AVHEFIID----------NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
S E V +F+ + + + + S + MY D++
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ---------RDRLY 120
Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMI-SGYAENNHPQEALK--- 336
N V + VS R R ++ + ++ SG K
Sbjct: 121 NDNQVFAKYNVS---RLQPYLKLRQALLELRPAKNVLIDGVLGSG-----------KTWV 166
Query: 337 ----LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAII 392
+ C M K+ L++ + + VL+ Q++ ID N +N +
Sbjct: 167 ALDVCLSYKVQCKM-DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 393 DMYAKCGSLESAREVFERMRR-----------RNVISWTS-MINAFAIH-------GDAR 433
+ S + R+ + NV + NAF + +
Sbjct: 226 R-------IHSIQAELRRLLKSKPYENCLLVLLNV--QNAKAWNAFNLSCKILLTTRFKQ 276
Query: 434 NA-LIFFNKMKDESIDPNGVTF-----IGVLYACSHAGLVDEGRE-----------IFAS 476
+ S+D + +T +L D RE I S
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 477 MTNEYNIPPKYEHYGC-----MVDLFGRA---NLLREALELVETMPFAPNV--------V 520
+ + ++H C +++ R+ + + P P+ +
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP--PSAHIPTILLSL 394
Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPD------HDGALVLLSNIYAKDKRWQDVGE 574
IW ++ + + + + L++ P L L + ++
Sbjct: 395 IWFDVIKSDV---MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL-------ENEYA 444
Query: 575 LRKSMKERGILKERAC----SRIEMNNEVYEFL-----TADRSHKQTD--QIYEKLNEVI 623
L +S+ + + + ++ Y + + + T ++ +
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504
Query: 624 SELKPAGYVPDIHSALVD-LEDEEK-REVILWHSEKLALCYGLISSKKDSCIRIVKNLRV 681
+++ + ++++ L+ + + I + K L+++ D +I +NL
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE---RLVNAILDFLPKIEENLIC 561
Query: 682 CEDC 685
+
Sbjct: 562 SKYT 565
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 4e-10
Identities = 62/486 (12%), Positives = 140/486 (28%), Gaps = 130/486 (26%)
Query: 64 PSSLYYALSIFSQIPAPPSRVSNKFIRAI-----SW--------SHRPKHALKVFLKMLN 110
++ L +F + + + KF+ + + +P +++++ +
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 111 EGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKL-GFGSDPFVQTGLVGMYGACGK-I 168
L D F ++R + L L V + G+ G GK
Sbjct: 118 R-LYNDNQVFAK--YNVSRLQ------PYLKLRQALLELRPAKNV--LIDGVLG-SGKTW 165
Query: 169 LDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSAC 228
+ + +F + + N E VL +
Sbjct: 166 VAL------DVCLSYK-----VQCKMDFKIF--------WLNLKNCNSPETVLEMLQKLL 206
Query: 229 SRA-GNLSYGEAVHEFIIDNNVALDAHLQSTLIT-MYANC----------GCMDMAKGLF 276
+ N + I ++ A L+ L + Y NC + F
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA----F 262
Query: 277 D---KVLL--KNLVVSTAMVSGYSRAGQVEDARLIFD-----QMVEKDLICWSAMISGYA 326
+ K+LL + V+ + + + ++ + ++ K L C +
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 327 ENNHPQEALKLFNEMQVCGMKPDKVT-----------MLSVISACAHLGVLDQAQRIHLY 375
+P+ L + E ++ T + ++I + L VL+ A+ ++
Sbjct: 323 LTTNPR-RLSIIAES----IRDGLATWDNWKHVNCDKLTTIIESS--LNVLEPAEYRKMF 375
Query: 376 IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN------AFAIH 429
+ F + ++ + V ++ + S++ +I
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY------SLVEKQPKESTISIP 429
Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
+ K+K E+ YA H +VD YNIP ++
Sbjct: 430 S-----IYLELKVKLEN-----------EYAL-HRSIVD-----------HYNIPKTFDS 461
Query: 490 YGCMVD 495
+
Sbjct: 462 DDLIPP 467
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 6e-05
Identities = 35/186 (18%), Positives = 66/186 (35%), Gaps = 49/186 (26%)
Query: 548 LDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADR 607
L ++ L+S I + ++ SM R +++R R+ +N+V+ R
Sbjct: 87 LRINYK---FLMSPIKTEQRQ--------PSMMTRMYIEQR--DRLYNDNQVFAKYNVSR 133
Query: 608 SHKQTDQIYEKLNEVISELKPAGYVPDIH-------SALV-----DLEDEEKREV-ILW- 653
Y KL + + EL+PA V I + + + + K + I W
Sbjct: 134 LQP-----YLKLRQALLELRPAKNVL-IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 654 -----HSEKL------ALCYGLISSKKDSCIRIVKNLRV-CEDCHNFIK--LVSKVYARE 699
+S + L Y I S N+++ ++ L SK Y
Sbjct: 188 NLKNCNSPETVLEMLQKLLY-QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 700 -IVIRD 704
+V+ +
Sbjct: 247 LLVLLN 252
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 3e-04
Identities = 42/305 (13%), Positives = 90/305 (29%), Gaps = 78/305 (25%)
Query: 3 TLSQPTKPLTLPTSTAI------SSCSSLTH-MKQTHAQILKL------SHSHHSQNSL- 48
+L + LT ++ L + T+ + L + N
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 49 -----LLKLLLTSF-SLPTTTPSSLYYALSIF---SQIPAPPSRVSNKFIRAISWSHRPK 99
L ++ +S L ++ LS+F + IP + ++ W K
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI--------LLSLIWFDVIK 401
Query: 100 HALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLV 159
+ V + L++ +++ + + + +L + L
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTI-------------SIPSIYLEL--------KVKLE 440
Query: 160 GMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQN---------------GLFDEV-L 203
Y I+D + D++P +D YF + LF V L
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIP--PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498
Query: 204 NL-FEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITM 262
+ F E K+ + IL+ + Y +I DN+ + + + ++
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKF--YK----PYICDNDPKYERLV-NAILDF 551
Query: 263 YANCG 267
Sbjct: 552 LPKIE 556
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 3e-04
Identities = 27/205 (13%), Positives = 65/205 (31%), Gaps = 20/205 (9%)
Query: 255 LQSTLITMYANCGCMDMAKGLFDK----VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM 310
L + M D A ++++ +L KN+++ A + E I++++
Sbjct: 66 LLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL 125
Query: 311 VEKD----LICWSAMISGYAENNHPQEALKLFNE-MQVCGMKPDKVTMLSVISACAHLGV 365
+ + + + + + +F + + + +++
Sbjct: 126 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCS-KD 184
Query: 366 LDQAQRI-HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
A +I L + K +G A ID + + R +FER+ +
Sbjct: 185 KSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 242
Query: 425 AFAI-------HGDARNALIFFNKM 442
+A GD + L +
Sbjct: 243 IWARFLAFESNIGDLASILKVEKRR 267
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 8e-04
Identities = 42/280 (15%), Positives = 82/280 (29%), Gaps = 33/280 (11%)
Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC-AHLGVLDQAQ 370
EK + + L + ++ + P + + + A G ++
Sbjct: 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILE--IDPYNLDVYPLHLASLHESGEKNKL- 358
Query: 371 RIHLYIDKNAFGGDLRVNNAII-----DMYAKCGSLESAREVFER---MRRRNVISWTSM 422
+ + D A+ Y + AR F + M + +W
Sbjct: 359 -YLIS--NDLV--DRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGF 413
Query: 423 INAFAIHGDARNALIFFNKMKDESIDPNGVT---FIGVLYACSHAGLVDEGREIF--ASM 477
++FAI G+ A+ + + F+G+ + G + E +
Sbjct: 414 AHSFAIEGEHDQAISAYTTAA--RLFQGTHLPYLFLGMQH--MQLGNILLANEYLQSSYA 469
Query: 478 TNEYNIPPKYEHYGCMVDLFGR----ANLLREALELVETMPFAP--NVVIWGSLMAACRV 531
+Y+ P G + N + AL LV+ W +L A R
Sbjct: 470 LFQYD-PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528
Query: 532 HGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQD 571
+ A A Q L L + ++ +Y K
Sbjct: 529 LKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGL 568
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 722 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.89 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.83 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.82 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.8 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.8 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.78 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.78 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.77 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.76 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.76 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.73 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.71 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.71 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.7 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.7 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.68 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.65 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.65 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.65 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.62 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.61 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.6 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.58 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.58 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.57 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.5 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.49 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.49 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.49 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.48 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.48 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.47 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.47 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.47 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.47 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.46 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.46 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.45 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.45 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.44 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.43 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.43 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.42 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.42 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.42 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.42 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.41 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.37 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.35 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.35 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.33 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.33 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.3 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.3 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.29 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.27 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.25 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.25 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.25 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.24 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.23 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.22 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.21 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.2 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.16 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.13 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.11 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.08 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.06 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.04 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.02 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.99 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.98 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.97 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.93 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.91 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.91 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.91 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.91 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.9 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.9 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.87 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.83 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.8 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.79 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.78 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.78 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.77 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.76 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.75 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.74 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.73 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.73 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.72 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.71 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.67 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.67 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.67 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.66 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.64 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.63 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.61 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.61 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.6 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.6 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.59 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.58 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.56 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.56 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.55 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.55 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.54 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.53 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.5 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.48 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.46 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.45 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.44 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.44 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.4 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.39 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.39 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.38 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.37 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.37 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.35 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.35 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.34 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.31 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.31 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.31 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.31 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.31 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.28 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.27 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.27 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.27 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.26 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.26 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.25 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.23 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.23 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.22 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.21 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.21 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.21 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.21 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.19 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.17 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.15 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.15 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.11 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.11 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.11 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.09 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.08 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.08 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.07 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.06 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.06 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.05 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.04 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.03 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.02 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.01 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.99 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.98 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.95 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.95 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.94 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.93 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.92 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.87 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.86 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.84 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.81 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.79 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.76 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.69 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.68 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.68 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.67 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.6 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.58 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.56 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.55 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.44 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.35 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.34 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.31 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.3 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.22 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.15 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.08 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.06 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.94 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.89 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.79 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.65 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.61 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.61 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.59 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.46 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.37 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.36 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.26 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.25 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.1 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.08 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.06 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.65 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.61 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.37 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.35 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.85 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.71 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 92.64 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.26 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.99 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 91.85 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 91.65 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.48 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 91.42 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 89.51 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 89.01 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 88.96 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 88.22 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 86.65 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 86.5 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 84.88 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 84.86 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 84.47 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 84.0 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 83.96 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 83.25 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 82.17 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 82.03 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 80.96 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 80.07 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=398.62 Aligned_cols=491 Identities=9% Similarity=-0.018 Sum_probs=343.3
Q ss_pred CChHHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHH
Q 004938 65 SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGT 144 (722)
Q Consensus 65 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 144 (722)
|.+..++..|+.++.++...|+.++..|.+.|++++|+.+|++|.. ..|+..++..++.+|.+.|++++|..+++.+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 144 (597)
T 2xpi_A 67 GSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKED 144 (597)
T ss_dssp ---------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTC
T ss_pred CccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHh
Confidence 8888899999999989999999999999999999999999999985 45788899999999999999999999999886
Q ss_pred HhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCCC-------------------CcccHHHHHHHHHhCCChhHHHHH
Q 004938 145 KLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR-------------------DIVPWSVMIDGYFQNGLFDEVLNL 205 (722)
Q Consensus 145 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-------------------~~~~~~~li~~~~~~g~~~~A~~~ 205 (722)
.. +++..+++.++.+|.++|++++|+++|+++... ++.+|+.++.+|.+.|++++|+++
T Consensus 145 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 222 (597)
T 2xpi_A 145 LY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKEC 222 (597)
T ss_dssp GG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 54 678999999999999999999999999965433 367899999999999999999999
Q ss_pred HHHHHHCCCCCC-HhHHHHHHHHHHccCChHHH--HHH-HHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhccc
Q 004938 206 FEEMKMSNVEPD-EMVLSKILSACSRAGNLSYG--EAV-HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL 281 (722)
Q Consensus 206 ~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a--~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 281 (722)
|++|.+.+ |+ ...+..+...+...+..+.+ ..+ +..+...+..+...+++.++.+|.+.|++++|.++|+++..
T Consensus 223 ~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 300 (597)
T 2xpi_A 223 YKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING 300 (597)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTT
T ss_pred HHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhc
Confidence 99998753 43 34444444433322222111 111 34444444445556677777888888888888888877765
Q ss_pred --CCchHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHH
Q 004938 282 --KNLVVSTAMVSGYSRAGQVEDARLIFDQMVE---KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356 (722)
Q Consensus 282 --~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 356 (722)
++..+|+.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+.+|+++.+.. +.+..++..+
T Consensus 301 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 379 (597)
T 2xpi_A 301 LEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAV 379 (597)
T ss_dssp GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHH
Confidence 5677777777777777777777777777632 256677777777777777777777777776542 3456666777
Q ss_pred HHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHH
Q 004938 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDAR 433 (722)
Q Consensus 357 l~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 433 (722)
...|.+.|++++|.++++.+.+.. +.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|+++
T Consensus 380 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 458 (597)
T 2xpi_A 380 GIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNIL 458 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHH
Confidence 777777777777777777776642 33456677777777777777777777776542 35667777777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhc---CCCCC--cchHHHHHHHHHhcCCHHHHHH
Q 004938 434 NALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY---NIPPK--YEHYGCMVDLFGRANLLREALE 508 (722)
Q Consensus 434 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~~~li~~~~~~g~~~~A~~ 508 (722)
+|+++|+++.+.. +.+..+|..++..+.+.|++++|.++|+.+.+.. +..|+ ..+|..++.+|.+.|++++|.+
T Consensus 459 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 537 (597)
T 2xpi_A 459 LANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537 (597)
T ss_dssp HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 7777777776642 2345667777777777777777777777766532 44555 4567777777777777777777
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhh
Q 004938 509 LVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564 (722)
Q Consensus 509 ~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 564 (722)
.++++ ...| +..+|..+..+|...|++++|...++++++++|+++..+..++++|.
T Consensus 538 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 538 ALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 77665 2233 56677777777777777777777777777777777777777766664
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=364.32 Aligned_cols=479 Identities=10% Similarity=-0.032 Sum_probs=401.8
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHH
Q 004938 93 SWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDAR 172 (722)
Q Consensus 93 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 172 (722)
...|.+..+...+..+. .++...|+.++..+.+.|++++|..+++.+.+. .|+..++..++.+|.+.|++++|+
T Consensus 64 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHH
Confidence 34555556666665543 357788999999999999999999999999864 567789999999999999999999
Q ss_pred HHHhcC--CCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHC---------------CCCCCHhHHHHHHHHHHccCChH
Q 004938 173 LMFDKM--SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS---------------NVEPDEMVLSKILSACSRAGNLS 235 (722)
Q Consensus 173 ~~f~~m--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------g~~p~~~t~~~ll~~~~~~g~~~ 235 (722)
.+|+++ ..+++.+|+.++.+|.+.|++++|+++|+++... |..++..+|+.++.+|.+.|+++
T Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 138 CLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 999998 4678889999999999999999999999954222 33456889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHH--H-HHhcccC----CchHHHHHHHHHHhcCCHHHHHHHHh
Q 004938 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKG--L-FDKVLLK----NLVVSTAMVSGYSRAGQVEDARLIFD 308 (722)
Q Consensus 236 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~--~-~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~f~ 308 (722)
+|.++|+.+++.+. .+...+..+...+...+..+.+.. + +..+... ...+|+.++..|.+.|++++|.++|+
T Consensus 218 ~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 218 RAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 99999999998753 356666666665544433322221 1 3333332 23456677889999999999999999
Q ss_pred ccCC--CCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChh
Q 004938 309 QMVE--KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLR 386 (722)
Q Consensus 309 ~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~ 386 (722)
++.+ ++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++.+.|++++|..++..+.+.. +.+..
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 374 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAV 374 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHH
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHH
Confidence 9987 689999999999999999999999999999865 4477889999999999999999999999998753 56788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004938 387 VNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463 (722)
Q Consensus 387 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 463 (722)
+++.++.+|.++|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +++..++..++.+|.+
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQ 453 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 999999999999999999999998763 568899999999999999999999999999853 4467899999999999
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHcCC
Q 004938 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-------PFAPN--VVIWGSLMAACRVHGE 534 (722)
Q Consensus 464 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~ll~~~~~~g~ 534 (722)
.|++++|.++|+.+.+. .+.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|+
T Consensus 454 ~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 454 LGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp HTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999873 4557889999999999999999999999988 45787 7899999999999999
Q ss_pred HHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 535 IELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 535 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
+++|...++++++.+|+++.++..++.+|.+.|++++|.+.++++.+..
T Consensus 532 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999998753
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-25 Score=236.07 Aligned_cols=369 Identities=14% Similarity=0.115 Sum_probs=283.7
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCh
Q 004938 191 DGYFQNGLFDEVLNLFEEMKMSNVEPD-EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCM 269 (722)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 269 (722)
..+.+.|++++|++.+.++.+. .|+ ...+..+...+...|+++.|...+..+++.. +.+...+..+...|.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 4455566677777766666543 233 3344444555566677777777766666653 34566677777777777777
Q ss_pred HHHHHHHHhccc--C-CchHHHHHHHHHHhcCCHHHHHHHHhccCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 004938 270 DMAKGLFDKVLL--K-NLVVSTAMVSGYSRAGQVEDARLIFDQMVE--K-DLICWSAMISGYAENNHPQEALKLFNEMQV 343 (722)
Q Consensus 270 ~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 343 (722)
++|...|+++.. | +..+|..+...+.+.|++++|.+.|+++.+ | +...+..+...+...|++++|++.|+++.+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 777777766642 2 334566677777777777777777776632 2 445677777888888888888888888877
Q ss_pred CCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHH
Q 004938 344 CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWT 420 (722)
Q Consensus 344 ~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 420 (722)
.. +.+..++..+...+...|++++|...++.+++.+ +.+...+..+...+...|++++|...|++..+ .+..+|.
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence 53 2346678888888888888888888888888764 44567788888889999999999999887653 4578899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh
Q 004938 421 SMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR 499 (722)
Q Consensus 421 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 499 (722)
.+...|...|++++|+..|+++.+. .|+ ..++..+..++.+.|++++|.+.|+.+.+ ..+.+...+..++..+.+
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHH
Confidence 9999999999999999999999884 554 56788899999999999999999999987 356678889999999999
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCC
Q 004938 500 ANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKR 568 (722)
Q Consensus 500 ~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 568 (722)
.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++++|+++..+..++.++...|+
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999987 5555 467899999999999999999999999999999999999999998877663
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-24 Score=229.25 Aligned_cols=350 Identities=13% Similarity=0.106 Sum_probs=307.7
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccC---CchHHHHHHHHHHhcCCHH
Q 004938 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK---NLVVSTAMVSGYSRAGQVE 301 (722)
Q Consensus 225 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~ 301 (722)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+.+.|++++|...++..... +..+|..+...|.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 445677899999999999998874 446777888889999999999999999887543 5678999999999999999
Q ss_pred HHHHHHhccCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHccCCchHHHHHHHHHH
Q 004938 302 DARLIFDQMVE--K-DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK-VTMLSVISACAHLGVLDQAQRIHLYID 377 (722)
Q Consensus 302 ~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~i~~~~~ 377 (722)
+|...|+++.. | +..+|..+...+.+.|++++|++.|+++.+. .|+. ..+..+...+...|++++|.+.+..++
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999998843 3 4567999999999999999999999999885 4554 456667778888999999999999998
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHH
Q 004938 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVT 453 (722)
Q Consensus 378 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t 453 (722)
+.. +.+..+++.+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++.... .|+ ..+
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 239 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVV 239 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHH
Confidence 864 45678899999999999999999999999864 45678999999999999999999999999884 565 678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHH
Q 004938 454 FIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PF-APNVVIWGSLMAACRV 531 (722)
Q Consensus 454 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~ 531 (722)
+..+..++...|++++|.+.|+.+.+ ..+.+...|..++..|.+.|++++|.+.++++ .. +++..+|..+...+..
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 88999999999999999999999987 34455788999999999999999999999998 33 3467899999999999
Q ss_pred cCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 532 HGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 532 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
.|++++|...++++++..|++...+..++.+|.+.|++++|.+.++++.+.
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999763
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-27 Score=254.09 Aligned_cols=183 Identities=13% Similarity=0.144 Sum_probs=163.4
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC---------chHHHHHHHHHHHcCCCCChh
Q 004938 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV---------LDQAQRIHLYIDKNAFGGDLR 386 (722)
Q Consensus 316 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~---------~~~a~~i~~~~~~~~~~~~~~ 386 (722)
..++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|++.+. ++.|.++|+.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45788899999999999999999999999999999999999999987654 578889999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004938 387 VNNAIIDMYAKCGSLESAREVFERMRR----RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS 462 (722)
Q Consensus 387 ~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 462 (722)
+||+||.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||++|+.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999998863 7899999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh
Q 004938 463 HAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR 499 (722)
Q Consensus 463 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 499 (722)
+.|++++|.++|++|.+ .+..|+..+|+.+++.|..
T Consensus 187 ~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhc
Confidence 99999999999999987 4899999999999888865
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-27 Score=253.97 Aligned_cols=185 Identities=14% Similarity=0.093 Sum_probs=172.2
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC---------hHHHHHHHHHHHHhCCCCch
Q 004938 82 SRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG---------LLEGMQVHGLGTKLGFGSDP 152 (722)
Q Consensus 82 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~ 152 (722)
...++.+|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.+. ++.|.++|+.|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 346889999999999999999999999999999999999999999987654 68899999999999999999
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHhcCC----CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 004938 153 FVQTGLVGMYGACGKILDARLMFDKMS----YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSAC 228 (722)
Q Consensus 153 ~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 228 (722)
.+||+||.+|++.|++++|.++|++|. .||..+||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999986 4788999999999999999999999999999999999999999999999
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 004938 229 SRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANC 266 (722)
Q Consensus 229 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 266 (722)
++.|++++|.+++++|.+.|..|+..||+.++..|...
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999988764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-22 Score=221.32 Aligned_cols=446 Identities=12% Similarity=0.018 Sum_probs=295.5
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHH
Q 004938 83 RVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMY 162 (722)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 162 (722)
..|......+.+.|++++|+..|+++.+.. |+..++..+..++.+.|++++|...++.+++.. +.+...+..+..+|
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 346667778888999999999999988764 678888888888888999999999998888875 45667788888888
Q ss_pred HhCCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHH
Q 004938 163 GACGKILDARLMFDKMSY---RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239 (722)
Q Consensus 163 ~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 239 (722)
.+.|++++|+..|+++.. .+......++..+........+.+.+..+...+..|+...+..-...............
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 888888888888887643 23333444454444443344444444333333222322222111110111111111111
Q ss_pred HHHHHHHcCC---------CCCHhHHHHHHHHHHh---cCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHH
Q 004938 240 VHEFIIDNNV---------ALDAHLQSTLITMYAN---CGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIF 307 (722)
Q Consensus 240 ~~~~~~~~g~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f 307 (722)
+...+..... +.+...+..+...+.. .|++++|...|+++.. .+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------------~~ 219 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR------------------------LF 219 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHH------------------------HH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH------------------------Hh
Confidence 1111111000 1112233333333332 4555555555443321 01
Q ss_pred hccC----------CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHH
Q 004938 308 DQMV----------EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377 (722)
Q Consensus 308 ~~~~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~ 377 (722)
+... ..+..+|..+...+...|++++|+..|+++.+.. |+..++..+..++...|++++|...+..+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 297 (514)
T 2gw1_A 220 EEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKAL 297 (514)
T ss_dssp HHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHH
T ss_pred hhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 0001 1134567778888888888888888888887754 446677777888888888888888888887
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004938 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454 (722)
Q Consensus 378 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 454 (722)
+.. +.+..++..+...|...|++++|...|++..+ .+...|..+...|...|++++|+..|+++.+.. +.+..++
T Consensus 298 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 375 (514)
T 2gw1_A 298 KLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVP 375 (514)
T ss_dssp TTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHH
T ss_pred hcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHH
Confidence 753 44567788888888889999999888887653 456788888888999999999999999988742 2345678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHh---cCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 004938 455 IGVLYACSHAGLVDEGREIFASMTNEYNIPPK----YEHYGCMVDLFGR---ANLLREALELVETM-PFAP-NVVIWGSL 525 (722)
Q Consensus 455 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~l 525 (722)
..+...+...|++++|...++.+.+...-.++ ...+..+...|.+ .|++++|.+.++++ ...| +..+|..+
T Consensus 376 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 455 (514)
T 2gw1_A 376 NFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGL 455 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 88888899999999999999988764222222 3378889999999 99999999999887 3334 56788889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHH
Q 004938 526 MAACRVHGEIELAEFAAKQLLQLDPDHDGALVLL 559 (722)
Q Consensus 526 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 559 (722)
...+...|++++|...++++++++|+++..+..+
T Consensus 456 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 456 AQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 9999999999999999999999999887766655
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-22 Score=220.81 Aligned_cols=262 Identities=11% Similarity=-0.027 Sum_probs=224.2
Q ss_pred chHHHHHHHHHh---cCCchHHHHHHHHHHh-----CCCCC--------ChhhHHHHHHHHHccCCchHHHHHHHHHHHc
Q 004938 316 ICWSAMISGYAE---NNHPQEALKLFNEMQV-----CGMKP--------DKVTMLSVISACAHLGVLDQAQRIHLYIDKN 379 (722)
Q Consensus 316 ~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~ 379 (722)
..+......+.. .|++++|+..|+++.+ ..-.| +..++..+...+...|++++|...+..+.+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 266 (514)
T 2gw1_A 187 DKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL 266 (514)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 344444554554 8999999999999987 31122 3456777888899999999999999999987
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHH
Q 004938 380 AFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDP-NGVTFI 455 (722)
Q Consensus 380 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~ 455 (722)
... ...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++... .| +..++.
T Consensus 267 ~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 342 (514)
T 2gw1_A 267 FPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--DPENIFPYI 342 (514)
T ss_dssp CCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT--CSSCSHHHH
T ss_pred Ccc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ChhhHHHHH
Confidence 533 88889999999999999999999998765 46788999999999999999999999999985 44 456888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHH
Q 004938 456 GVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM----PFAPN----VVIWGSLMA 527 (722)
Q Consensus 456 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~ 527 (722)
.+...+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++ +..|+ ...|..+..
T Consensus 343 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 420 (514)
T 2gw1_A 343 QLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKAT 420 (514)
T ss_dssp HHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 8999999999999999999999873 4556788999999999999999999999887 22233 448899999
Q ss_pred HHHH---cCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 528 ACRV---HGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 528 ~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
.+.. .|++++|...++++++.+|+++..+..++.+|...|++++|.+.+++..+..
T Consensus 421 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 421 LLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 9999 9999999999999999999999999999999999999999999999998754
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-21 Score=209.46 Aligned_cols=319 Identities=12% Similarity=0.068 Sum_probs=238.7
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHhccc---CCchHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHH
Q 004938 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLL---KNLVVSTAMVSGYSRAGQVEDARLIFDQMVE---KDLICWSAMISGY 325 (722)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 325 (722)
+...+..+...|.+.|++++|..+|+++.. .+..+|..+...|.+.|++++|...|+++.+ .+..+|..+...|
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 444555555555555555555555555532 2344555555555555555555555655532 2455677777777
Q ss_pred HhcCCchHHHHHHHHHHhCCCCCCh----hhHHHH------------HHHHHccCCchHHHHHHHHHHHcCCCCChhHHH
Q 004938 326 AENNHPQEALKLFNEMQVCGMKPDK----VTMLSV------------ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN 389 (722)
Q Consensus 326 ~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l------------l~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~ 389 (722)
.+.|++++|+..|+++.+. .|+. ..+..+ ...+...|++++|...+..+.+.. +.+..++.
T Consensus 105 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 181 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRE 181 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 7777777777777777664 3433 333333 344778899999999999888764 45678888
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HHHH--------
Q 004938 390 AIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT-FIGV-------- 457 (722)
Q Consensus 390 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~l-------- 457 (722)
.+..+|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|+++.. ..|+... +..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHH
Confidence 999999999999999999998764 5788999999999999999999999999987 4566543 3333
Q ss_pred ----HHHHHhcCCHHHHHHHHHHhHhhcCCCCC-----cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 004938 458 ----LYACSHAGLVDEGREIFASMTNEYNIPPK-----YEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLM 526 (722)
Q Consensus 458 ----l~a~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 526 (722)
...+.+.|++++|..+|+.+.+. .|+ ..+|..++.++.+.|++++|++.++++ ...| +..+|..+.
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 336 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRA 336 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 78899999999999999999873 343 347899999999999999999999987 4445 678999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHH------------HHhhhCC-----CcchHHHHHHH
Q 004938 527 AACRVHGEIELAEFAAKQLLQLDPDHDGALVLLS------------NIYAKDK-----RWQDVGELRKS 578 (722)
Q Consensus 527 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~~~a~~~~~~ 578 (722)
.+|...|++++|...++++++++|+++..+..++ +.|...| +.+++.+.+++
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999998 5577777 34445555554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=9.5e-21 Score=204.24 Aligned_cols=360 Identities=12% Similarity=0.028 Sum_probs=197.8
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 004938 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264 (722)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 264 (722)
.|..+...|.+.|++++|+.+|+++.+. .+.+..++..+..++...|+++.|...++.+++.+ +.+..++..+..+|.
T Consensus 28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 28 KHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 3555555555555666666665555543 12345555555556666666666666666665553 234556666666666
Q ss_pred hcCChHHHHHHHHhcccCCc------hHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 004938 265 NCGCMDMAKGLFDKVLLKNL------VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338 (722)
Q Consensus 265 ~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 338 (722)
+.|++++|...|+++...+. ..|..++..+... .+..+...+...|++++|+..|
T Consensus 106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666666666644322 3333333321110 1112222344444444444444
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CC
Q 004938 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RN 415 (722)
Q Consensus 339 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~ 415 (722)
+++.+.. +.+..++..+..++...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+
T Consensus 167 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 244 (450)
T 2y4t_A 167 DKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH 244 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh
Confidence 4444331 2233444444444444555555555544444432 23344455555555555555555555554432 12
Q ss_pred hHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004938 416 VISWTSM------------INAFAIHGDARNALIFFNKMKDESIDPN-----GVTFIGVLYACSHAGLVDEGREIFASMT 478 (722)
Q Consensus 416 ~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 478 (722)
...+..+ ...+...|++++|+..|+++.. +.|+ ...+..+..++.+.|++++|...++.+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 322 (450)
T 2y4t_A 245 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2233322 6667777777777777777776 3454 2356666777777777777777777776
Q ss_pred hhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHHcC-----CHHHHH
Q 004938 479 NEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAA------------CRVHG-----EIELAE 539 (722)
Q Consensus 479 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~------------~~~~g-----~~~~a~ 539 (722)
+. .+.+...|..+..+|...|++++|.+.++++ ...|+ ...|..+..+ |...| +.+++.
T Consensus 323 ~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~ 400 (450)
T 2y4t_A 323 QM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEII 400 (450)
T ss_dssp HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHH
T ss_pred Hh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHH
Confidence 52 3445677777777777777888777777776 55554 4455555432 22233 567778
Q ss_pred HHHHH-HHccCCCCCc----------hHHHHHHHhhhCCCcch
Q 004938 540 FAAKQ-LLQLDPDHDG----------ALVLLSNIYAKDKRWQD 571 (722)
Q Consensus 540 ~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 571 (722)
+.|++ +++..|++.. .+..+..+|...|+.+.
T Consensus 401 ~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 401 KAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 88886 7778887532 33455555555555544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-20 Score=208.55 Aligned_cols=418 Identities=11% Similarity=0.039 Sum_probs=323.2
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 004938 152 PFVQTGLVGMYGACGKILDARLMFDKMSY---RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSAC 228 (722)
Q Consensus 152 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 228 (722)
...+..+...|.+.|++++|++.|+++.. .+...|..+...|.+.|++++|++.|+++.+.. +.+..++..+...+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 45677788889999999999999988753 366678889999999999999999999988753 33567888888888
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccC------CchHHHHHHHHHHhcCCHHH
Q 004938 229 SRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK------NLVVSTAMVSGYSRAGQVED 302 (722)
Q Consensus 229 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~ 302 (722)
...|+++.|...++ .+.. .|+ .....+..+...+....|...++++... ........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 99999999999886 4332 222 2233355666667778888888888653 22334566667777888888
Q ss_pred HHHHHhccCCCCcc---hHHHHHHHHHh--------cCCchHHHHHHHHHHhCCCCCC--------hhhHHHHHHHHHcc
Q 004938 303 ARLIFDQMVEKDLI---CWSAMISGYAE--------NNHPQEALKLFNEMQVCGMKPD--------KVTMLSVISACAHL 363 (722)
Q Consensus 303 A~~~f~~~~~~~~~---~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~--------~~t~~~ll~~~~~~ 363 (722)
+...+......+.. .+..+...+.. .|++++|+.+|+++.+. .|+ ..++..+...+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhc
Confidence 88777777665543 33333333222 25789999999999875 344 22466666778889
Q ss_pred CCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHH
Q 004938 364 GVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFN 440 (722)
Q Consensus 364 g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 440 (722)
|++++|...+..+.+.. |+...+..+...|...|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|+
T Consensus 257 ~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999999864 5578888899999999999999999998763 567889999999999999999999999
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC----CC
Q 004938 441 KMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM----PF 515 (722)
Q Consensus 441 ~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~ 515 (722)
++... .|+ ...+..+...+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++ +.
T Consensus 335 ~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 335 KAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 99885 444 567888999999999999999999999873 4556778999999999999999999999886 11
Q ss_pred CC----CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 516 AP----NVVIWGSLMAACRVH----------GEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 516 ~p----~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
.+ ....+..+...+... |++++|...++++++.+|+++..+..++.+|...|++++|.+.+++..+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11 223344555667777 9999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 004938 582 RG 583 (722)
Q Consensus 582 ~g 583 (722)
..
T Consensus 491 ~~ 492 (537)
T 3fp2_A 491 LA 492 (537)
T ss_dssp HC
T ss_pred hC
Confidence 54
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-20 Score=207.36 Aligned_cols=438 Identities=11% Similarity=0.024 Sum_probs=308.0
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHH
Q 004938 82 SRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGM 161 (722)
Q Consensus 82 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 161 (722)
...|..+...+.+.|++++|++.|+++.+..+ .+..++..+..++.+.|++++|...++.+++.. +.+...+..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 34677888899999999999999999988643 266778888888899999999999999998876 4567788888888
Q ss_pred HHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHC------CCCCCHhHHHHHHHHHHccCChH
Q 004938 162 YGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS------NVEPDEMVLSKILSACSRAGNLS 235 (722)
Q Consensus 162 ~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~g~~~ 235 (722)
|...|++++|+..|+.+ ..+....+..+..+...+...+|+..++++... ...|+..... .+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA----SFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHH----HHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHH----HHHHhcChH
Confidence 99999999999988644 223333334455556666667888888887543 1223333222 222333333
Q ss_pred HHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhcC-ChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCC
Q 004938 236 YGEAVHEFIIDNNVALD-AHLQSTLITMYANCG-CMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK 313 (722)
Q Consensus 236 ~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~ 313 (722)
.+...+..... ..+. ......+...+...+ ++. ...|++++|...|+++.+.
T Consensus 178 ~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~------------------------~a~~~~~~A~~~~~~~l~~ 231 (537)
T 3fp2_A 178 LEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYL------------------------VANDLLTKSTDMYHSLLSA 231 (537)
T ss_dssp HHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHH------------------------HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhH------------------------HHHHHHHHHHHHHHHHHHH
Confidence 32222111110 0111 112222222222111 000 1113455555556665443
Q ss_pred C----------cchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCC
Q 004938 314 D----------LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG 383 (722)
Q Consensus 314 ~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~ 383 (722)
+ ..+|..+...+...|++++|+..|+++.+. .|+..++..+...+...|++++|...+..+.+.. +.
T Consensus 232 ~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 308 (537)
T 3fp2_A 232 NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PE 308 (537)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TT
T ss_pred CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CC
Confidence 2 124666777888999999999999999885 5667788888888999999999999999998864 45
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 004938 384 DLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLY 459 (722)
Q Consensus 384 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 459 (722)
+..++..+...|...|++++|.+.|++..+ .+...|..+...|...|++++|+..|+++.+. .|+ ...+..+..
T Consensus 309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 386 (537)
T 3fp2_A 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAE 386 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 678899999999999999999999998763 45778999999999999999999999999885 444 568888899
Q ss_pred HHHhcCCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhc----------CCHHHHHHHHHhC-CCCC-CHHHHH
Q 004938 460 ACSHAGLVDEGREIFASMTNEYNIPPK----YEHYGCMVDLFGRA----------NLLREALELVETM-PFAP-NVVIWG 523 (722)
Q Consensus 460 a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~ 523 (722)
.+...|++++|...|+.+.+.....++ ...+..+...|.+. |++++|...++++ ...| +..+|.
T Consensus 387 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 466 (537)
T 3fp2_A 387 ILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKI 466 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999998764211111 11234456777777 9999999999988 3344 578899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHH
Q 004938 524 SLMAACRVHGEIELAEFAAKQLLQLDPDHDGALV 557 (722)
Q Consensus 524 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 557 (722)
.+...+...|++++|...+++++++.|+++....
T Consensus 467 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 467 GLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 9999999999999999999999999998875544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.5e-18 Score=175.13 Aligned_cols=303 Identities=12% Similarity=0.051 Sum_probs=185.7
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHhcccC---CchHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHH
Q 004938 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLK---NLVVSTAMVSGYSRAGQVEDARLIFDQMVE---KDLICWSAMISGY 325 (722)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 325 (722)
|+..+..+...+.+.|++++|...|+++... +..+|..+...+...|++++|...|+++.+ .+...|..+...+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4556777788888888888888888777432 455666677777777777777777766532 2445666677777
Q ss_pred HhcCCchHHHHHHHHHHhCCCCC---C-hhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 004938 326 AENNHPQEALKLFNEMQVCGMKP---D-KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSL 401 (722)
Q Consensus 326 ~~~g~~~~A~~~~~~m~~~g~~p---~-~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 401 (722)
...|++++|+..|+++.+. .| + ...+..+.... . ...+..+...+...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCH
Confidence 7777777777777776654 33 2 22222221000 0 00111224555566666
Q ss_pred HHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004938 402 ESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMT 478 (722)
Q Consensus 402 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 478 (722)
++|.+.|+++.+ .+...|..+...+...|++++|+..++++.... +.+..++..+...+...|++++|...|+.+.
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666666665542 344556666666666666666666666666531 2234455566666666666666666666665
Q ss_pred hhcCCCCCcchHH------------HHHHHHHhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHHcCCHHHHHH
Q 004938 479 NEYNIPPKYEHYG------------CMVDLFGRANLLREALELVETM-PFAPN-V----VIWGSLMAACRVHGEIELAEF 540 (722)
Q Consensus 479 ~~~~~~~~~~~~~------------~li~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~ll~~~~~~g~~~~a~~ 540 (722)
+. .+.+...+. .+...+.+.|++++|.+.++++ ...|+ . ..|..+...+...|++++|..
T Consensus 216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 42 122222222 2255577777777777777766 22333 2 234456667777888888888
Q ss_pred HHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 541 AAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 541 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
.++++++.+|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 888888888877777778888888888888888888777663
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.2e-18 Score=174.83 Aligned_cols=320 Identities=13% Similarity=0.041 Sum_probs=238.0
Q ss_pred CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhccc--C-CchHHHHHHHH
Q 004938 217 DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL--K-NLVVSTAMVSG 293 (722)
Q Consensus 217 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~ 293 (722)
|...+..+...+...|+++.|...++.+++.. +.+..++..+...|...|++++|...|+++.. | +...|..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 35567788888999999999999999999875 44788999999999999999999999999854 2 56789999999
Q ss_pred HHhcCCHHHHHHHHhccCCCCc------chHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCch
Q 004938 294 YSRAGQVEDARLIFDQMVEKDL------ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLD 367 (722)
Q Consensus 294 ~~~~g~~~~A~~~f~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 367 (722)
|.+.|++++|...|++..+.++ ..+..+...+ . ...+......+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCHH
Confidence 9999999999999999866544 2233331110 0 011222334455666666
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004938 368 QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKD 444 (722)
Q Consensus 368 ~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 444 (722)
+|...+..+.+.. +.+..++..+...|...|++++|...|++..+ .+...|..+...|...|++++|+..|++..+
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666665543 34456666677777777777777777776653 4566777777777788888888888887776
Q ss_pred cCCCCCHH-HHH------------HHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCc----chHHHHHHHHHhcCCHHHHH
Q 004938 445 ESIDPNGV-TFI------------GVLYACSHAGLVDEGREIFASMTNEYNIPPKY----EHYGCMVDLFGRANLLREAL 507 (722)
Q Consensus 445 ~g~~p~~~-t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~ 507 (722)
. .|+.. .+. .+...+...|++++|...++.+.+.. +.+. ..+..+...|.+.|++++|.
T Consensus 217 ~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 217 L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred h--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 3 34432 222 23556888899999999999888732 2222 23556788899999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhh
Q 004938 508 ELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAK 565 (722)
Q Consensus 508 ~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 565 (722)
+.+++. ...| +..+|..+...+...|++++|...++++++++|++......+..++..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 999887 3345 678999999999999999999999999999999998888887776543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.80 E-value=4.4e-15 Score=169.01 Aligned_cols=485 Identities=10% Similarity=0.065 Sum_probs=337.2
Q ss_pred hhHHHHHHHHHHHhcCCCCCCchhHHHHHHHhccCCCCCCCChHHHHHHhccCCCCCcchHH-HHHHHHHhCCCchHHHH
Q 004938 25 LTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSN-KFIRAISWSHRPKHALK 103 (722)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~-~li~~~~~~g~~~~a~~ 103 (722)
+.......+.-+..| ..++.++|+|...|.. . .++++. .+.+-+- |. ..+.-|+...++..|.-
T Consensus 855 Lkll~p~LE~~~~~g----~~~~~~hnalakiyid--~-n~npe~---fL~~n~~-----yd~~~vgkyce~rDp~la~i 919 (1630)
T 1xi4_A 855 LKLLLPWLEARIHEG----CEEPATHNALAKIYID--S-NNNPER---FLRENPY-----YDSRVVGKYCEKRDPHLACV 919 (1630)
T ss_pred HHHHHHHHHHHHhCC----CCCHHHHHHHHHHHhc--c-CCCHHH---HhhccCc-----ccHHHHHHHHHhcCcchHHH
Confidence 344444455555556 4789999999999987 2 144443 2222111 21 23334444444444444
Q ss_pred HHHHHHHC----CC----------------CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCC--CCchhhHHHHHHH
Q 004938 104 VFLKMLNE----GL----------------TIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGF--GSDPFVQTGLVGM 161 (722)
Q Consensus 104 ~~~~m~~~----g~----------------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~ 161 (722)
.|++-.-. .+ +-|...|..++. .+-+-=+++.++.....+ ..++.-....+..
T Consensus 920 ay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~-----~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKa 994 (1630)
T 1xi4_A 920 AYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLL-----ESNPYRRPLIDQVVQTALSETQDPEEVSVTVKA 994 (1630)
T ss_pred HhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhc-----CCcHHHHHHHHHHHHhhcccccCHHHhHHHHHH
Confidence 44320000 00 013334444441 111112234444333332 2233444567788
Q ss_pred HHhCCCHHHHHHHHhcCC-CCC-----cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChH
Q 004938 162 YGACGKILDARLMFDKMS-YRD-----IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLS 235 (722)
Q Consensus 162 ~~~~g~~~~A~~~f~~m~-~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 235 (722)
|...|.+.+|+++++++. +++ ...-|.++....+. +..+..+...+.... + ...+...+...|.++
T Consensus 995 f~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyE 1066 (1630)
T 1xi4_A 995 FMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFE 1066 (1630)
T ss_pred HHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHH
Confidence 889999999999999876 222 23366677777776 556666666655421 1 333667788899999
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCc
Q 004938 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315 (722)
Q Consensus 236 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~ 315 (722)
+|.++++... ......+.+ +-..|++++|.++.++. .+..+|..+..++.+.|++++|.+.|.+. .|.
T Consensus 1067 EAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~ 1134 (1630)
T 1xi4_A 1067 EAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDP 1134 (1630)
T ss_pred HHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CCh
Confidence 9999998752 112222333 23788999999998877 44778999999999999999999999774 677
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 004938 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395 (722)
Q Consensus 316 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 395 (722)
..|..++..+.+.|++++|++.|...++.. ++....+.++.+|++.+++++...+. + .++...+..+.+.|
T Consensus 1135 say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~l 1205 (1630)
T 1xi4_A 1135 SSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRC 1205 (1630)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHH
Confidence 888999999999999999999999877754 44433445888999998888644442 2 34556677899999
Q ss_pred HhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004938 396 AKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475 (722)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 475 (722)
...|++++|...|... ..|..+...|.+.|++++|++.+++. -+..+|..+-.+|...|++..|.....
T Consensus 1206 e~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl 1274 (1630)
T 1xi4_A 1206 YDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGL 1274 (1630)
T ss_pred HhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 9999999999999985 58999999999999999999999876 356889999999999999999988765
Q ss_pred HhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHH--cCCHHHHHHHHHHHHccCC-
Q 004938 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAACRV--HGEIELAEFAAKQLLQLDP- 550 (722)
Q Consensus 476 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~p- 550 (722)
.+ ..+.+.+..++..|.+.|.+++|+.+++.. +.+|. ...|.-|...+.+ -++..++.+.|..-..+.|
T Consensus 1275 ~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~ 1348 (1630)
T 1xi4_A 1275 HI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKV 1348 (1630)
T ss_pred hh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchH
Confidence 43 345667789999999999999999999876 66554 3567666666665 4566777777777766666
Q ss_pred ----CCCchHHHHHHHhhhCCCcchHHHH
Q 004938 551 ----DHDGALVLLSNIYAKDKRWQDVGEL 575 (722)
Q Consensus 551 ----~~~~~~~~l~~~~~~~g~~~~a~~~ 575 (722)
++...|..+..+|.+.|+|+.|...
T Consensus 1349 ~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1349 LRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred hHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 6677888999999999999999853
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.7e-17 Score=167.04 Aligned_cols=289 Identities=13% Similarity=0.048 Sum_probs=192.0
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 004938 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENN 329 (722)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 329 (722)
+.+..++..+...+...|++++|.++|+++... ...+...+..++..+...|
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----------------------------~p~~~~~~~~~~~~~~~~~ 70 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK----------------------------DPFHASCLPVHIGTLVELN 70 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------CTTCTTTHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------------------CCCChhhHHHHHHHHHHhh
Confidence 344455555666666666666666665544221 1113344445555555666
Q ss_pred CchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC-CchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 004938 330 HPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG-VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVF 408 (722)
Q Consensus 330 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 408 (722)
++++|+.+++++.+.. +.+...+..+...+...| ++++|...+..+.+.. +.+...+..+...|...|++++|.+.|
T Consensus 71 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 148 (330)
T 3hym_B 71 KANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAY 148 (330)
T ss_dssp CHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 6666666666665532 223445555555566666 6666666666665543 334555666677777777777777777
Q ss_pred HhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcC--
Q 004938 409 ERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDP-NGVTFIGVLYACSHAGLVDEGREIFASMTNEYN-- 482 (722)
Q Consensus 409 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-- 482 (722)
++..+ .+...|..+...|...|++++|+..|++..+. .| +...+..+...+...|++++|...++.+.+...
T Consensus 149 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 226 (330)
T 3hym_B 149 FTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAI 226 (330)
T ss_dssp HHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhc
Confidence 66543 34556666777777778888888888777764 33 345677777777888888888888877765321
Q ss_pred -----CCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCch
Q 004938 483 -----IPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGA 555 (722)
Q Consensus 483 -----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 555 (722)
.+.....+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++++|+++..
T Consensus 227 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 306 (330)
T 3hym_B 227 GNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS 306 (330)
T ss_dssp SCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHH
T ss_pred cccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHH
Confidence 1344568888888899999999999888887 3333 56788889999999999999999999999999999989
Q ss_pred HHHHHHHh-hhCCCcc
Q 004938 556 LVLLSNIY-AKDKRWQ 570 (722)
Q Consensus 556 ~~~l~~~~-~~~g~~~ 570 (722)
+..++.++ ...|+.+
T Consensus 307 ~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 307 VTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHhCchh
Confidence 99999888 4555543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.79 E-value=6e-16 Score=170.29 Aligned_cols=407 Identities=11% Similarity=0.061 Sum_probs=225.3
Q ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHhcCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 004938 150 SDPFVQTGLVGMYGACGKILDARLMFDKMSYR---DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILS 226 (722)
Q Consensus 150 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 226 (722)
.+...|..++. +.+.|++++|+.+|+++... +...|..++..+.+.|++++|..+|++.... .|+...|...+.
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~ 87 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLS 87 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHH
Confidence 34555555555 35556666666666665432 2223666666666666666666666666553 245444444443
Q ss_pred HH-HccCChHHHHH----HHHHHHHc-CCCC-CHhHHHHHHHHHHh---------cCChHHHHHHHHhcccCCc----hH
Q 004938 227 AC-SRAGNLSYGEA----VHEFIIDN-NVAL-DAHLQSTLITMYAN---------CGCMDMAKGLFDKVLLKNL----VV 286 (722)
Q Consensus 227 ~~-~~~g~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~----~~ 286 (722)
.. ...|+.+.|.+ +++.+++. |..| +..+|...+....+ .|+++.|..+|++.+.... ..
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 22 23344444443 45444432 3332 34555555555443 5666777777766654211 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH------HhCC---CCCCh-------
Q 004938 287 STAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM------QVCG---MKPDK------- 350 (722)
Q Consensus 287 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~g---~~p~~------- 350 (722)
|..........|. ..+..++.+ ..+++++|..++++. .+.. ++|+.
T Consensus 168 ~~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 229 (530)
T 2ooe_A 168 WRDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQ 229 (530)
T ss_dssp HHHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHH
T ss_pred HHHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHH
Confidence 2221110000000 001111110 122334444444331 1111 12221
Q ss_pred -hhHHHHHHHHHc----cCCc----hHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-------cCCHH-------HHHHH
Q 004938 351 -VTMLSVISACAH----LGVL----DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK-------CGSLE-------SAREV 407 (722)
Q Consensus 351 -~t~~~ll~~~~~----~g~~----~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~ 407 (722)
..|...+..... .++. +.+..+++++++. .+.+..+|..++..+.+ .|+++ +|..+
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 223333322111 1222 2556667766665 24456677777766664 57765 77788
Q ss_pred HHhcCC---C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhHhhc
Q 004938 408 FERMRR---R-NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG--VTFIGVLYACSHAGLVDEGREIFASMTNEY 481 (722)
Q Consensus 408 ~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 481 (722)
|++..+ | +...|..++..+.+.|++++|..+|+++++ +.|+. ..|...+..+.+.|++++|.++|+...+.
T Consensus 309 ~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~- 385 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED- 385 (530)
T ss_dssp HHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 877653 2 466777777777788888888888888777 45543 36777777777778888888888877752
Q ss_pred CCCCCcchHHHHHHH-HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCc----
Q 004938 482 NIPPKYEHYGCMVDL-FGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG---- 554 (722)
Q Consensus 482 ~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---- 554 (722)
.+.+...|...+.+ +...|+.++|..+|++. ...| +...|..++..+...|+.++|..+|+++++..|.++.
T Consensus 386 -~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~ 464 (530)
T 2ooe_A 386 -ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 464 (530)
T ss_dssp -TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHH
T ss_pred -cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHH
Confidence 22223333332222 23578888888888766 3334 4677777777777788888888888888877665544
Q ss_pred hHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 555 ALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 555 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
.+...+......|+.+.+.++.+++.+.
T Consensus 465 lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 465 IWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5556666677778888888887777654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=6.9e-18 Score=173.07 Aligned_cols=320 Identities=15% Similarity=0.157 Sum_probs=115.1
Q ss_pred hCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHH
Q 004938 164 ACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEF 243 (722)
Q Consensus 164 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 243 (722)
+.|++++|.+.++++..|+ .|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6788999999999996664 8999999999999999999999653 5778999999999999999999998888
Q ss_pred HHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHH
Q 004938 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323 (722)
Q Consensus 244 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~ 323 (722)
..+. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.++..|...|++++|...|..+ ..|..++.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 7774 45678899999999999999998888643 45556666666666666666666666655 35666666
Q ss_pred HHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 004938 324 GYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLES 403 (722)
Q Consensus 324 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 403 (722)
++.+.|++++|.+.++++ .+..||..++.+|...|+++.|.
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~--------------------------------- 197 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQ--------------------------------- 197 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHH---------------------------------
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHH---------------------------------
Confidence 666666666666666665 14556666666666666666653
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH--hcCCHHHHHHHHHHhHhh
Q 004938 404 AREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACS--HAGLVDEGREIFASMTNE 480 (722)
Q Consensus 404 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~--~~g~~~~a~~~~~~~~~~ 480 (722)
.....+. .++.....++..|.+.|++++|+.+++.... ..+. ...|+.+.-+++ +.+.+.+.++.|. ++
T Consensus 198 --~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~--le~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ 269 (449)
T 1b89_A 198 --MCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFW---SR 269 (449)
T ss_dssp --HTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TT
T ss_pred --HHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HH
Confidence 3222222 1222222355566666666666666666554 2232 223333333333 3344444444443 22
Q ss_pred cCCCC------CcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004938 481 YNIPP------KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDP 550 (722)
Q Consensus 481 ~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 550 (722)
-.++| +..+|.-++-.|...++++.|...+-+-+ |+..--........+-.+.|.--++..-.++..|
T Consensus 270 ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p 343 (449)
T 1b89_A 270 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP 343 (449)
T ss_dssp SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH
Confidence 34444 46778889999999999998887766552 2211122233334445554444444444444333
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-17 Score=174.18 Aligned_cols=276 Identities=12% Similarity=-0.004 Sum_probs=208.2
Q ss_pred cCCHHHHHH-HHhccCCC-------CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchH
Q 004938 297 AGQVEDARL-IFDQMVEK-------DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368 (722)
Q Consensus 297 ~g~~~~A~~-~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 368 (722)
.|++++|.. .|++.... +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 345555555 55543211 24557777777777788888888887777653 3355667777777777788888
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChHHHHH---------------HHHHHHHcC
Q 004938 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR--R-NVISWTS---------------MINAFAIHG 430 (722)
Q Consensus 369 a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~~~~g 430 (722)
|...+..+++.. +.+..++..+...|...|++++|.+.|+++.+ | +...+.. .+..+...|
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 888777777764 44566777777788888888888888777653 1 2222211 133344889
Q ss_pred CHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHH
Q 004938 431 DARNALIFFNKMKDESIDPN---GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507 (722)
Q Consensus 431 ~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 507 (722)
++++|+..|+++.+. .|+ ..++..+...+...|++++|...|+.+.+. .+.+...+..++..|.+.|++++|.
T Consensus 196 ~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 196 LFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999884 454 678889999999999999999999999873 4456788999999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-----------CchHHHHHHHhhhCCCcchHHH
Q 004938 508 ELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH-----------DGALVLLSNIYAKDKRWQDVGE 574 (722)
Q Consensus 508 ~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~ 574 (722)
+.++++ ...| +..+|..+...+...|++++|...+++++++.|++ ...+..++.+|...|++++|..
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 999987 3344 57889999999999999999999999999999887 7789999999999999999999
Q ss_pred HHHH
Q 004938 575 LRKS 578 (722)
Q Consensus 575 ~~~~ 578 (722)
++++
T Consensus 352 ~~~~ 355 (368)
T 1fch_A 352 ADAR 355 (368)
T ss_dssp HHTT
T ss_pred hHHH
Confidence 8763
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=5.5e-18 Score=173.79 Aligned_cols=217 Identities=12% Similarity=0.123 Sum_probs=68.8
Q ss_pred CChHHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHH
Q 004938 65 SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGT 144 (722)
Q Consensus 65 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 144 (722)
|++++|..++++++.|+ +|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+....
T Consensus 17 ~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 17 GNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 89999999999997775 8999999999999999999999763 578899999999999999999999888877
Q ss_pred HhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHH
Q 004938 145 KLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKI 224 (722)
Q Consensus 145 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 224 (722)
+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|..+
T Consensus 89 k~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~L 154 (449)
T 1b89_A 89 KK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRL 154 (449)
T ss_dssp ----------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHH
T ss_pred Hh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHH
Confidence 74 55688899999999999999999988864 67778999999999999999999999876 257777
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHH
Q 004938 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304 (722)
Q Consensus 225 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 304 (722)
..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.|++++|.
T Consensus 155 A~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai 227 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELI 227 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHH
Confidence 77777777777777776665 256677777777777777777755543322 22222223444444444444444
Q ss_pred HHHhcc
Q 004938 305 LIFDQM 310 (722)
Q Consensus 305 ~~f~~~ 310 (722)
.+++..
T Consensus 228 ~lLe~a 233 (449)
T 1b89_A 228 TMLEAA 233 (449)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.6e-17 Score=165.95 Aligned_cols=265 Identities=11% Similarity=-0.002 Sum_probs=230.8
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHH
Q 004938 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAII 392 (722)
Q Consensus 313 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li 392 (722)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|++++|...+..+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 366778888999999999999999999998764 3455667778888899999999999999999864 45678889999
Q ss_pred HHHHhcC-CHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 004938 393 DMYAKCG-SLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVD 468 (722)
Q Consensus 393 ~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 468 (722)
..|...| ++++|.+.|++..+ .+...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998764 456789999999999999999999999999852 223567777889999999999
Q ss_pred HHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHHcCCHHH
Q 004938 469 EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PF----------APNVVIWGSLMAACRVHGEIEL 537 (722)
Q Consensus 469 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~ll~~~~~~g~~~~ 537 (722)
+|...++.+.+ ..+.+...+..+...|.+.|++++|.+.++++ .. ..+..+|..+...+...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999987 44556788999999999999999999999876 11 3345789999999999999999
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 538 AEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 538 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
|...++++++..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999987653
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-15 Score=165.63 Aligned_cols=319 Identities=9% Similarity=-0.015 Sum_probs=219.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCChHHHHHHHHhcccC-CchHHHHHHHHHHh----cCCHH
Q 004938 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYAN----CGCMDMAKGLFDKVLLK-NLVVSTAMVSGYSR----AGQVE 301 (722)
Q Consensus 231 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~ 301 (722)
.++.+.|...+....+.| +...+..|..+|.. .+++++|...|++.... +...+..+...|.. .++.+
T Consensus 92 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~ 168 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYV 168 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHH
Confidence 344444444444444432 33333444444444 44444444444444333 23334444444443 44555
Q ss_pred HHHHHHhccCC-CCcchHHHHHHHHHh----cCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCCchHHHHH
Q 004938 302 DARLIFDQMVE-KDLICWSAMISGYAE----NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH----LGVLDQAQRI 372 (722)
Q Consensus 302 ~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~i 372 (722)
+|.+.|++..+ .+..++..+...|.. .++.++|+++|++..+.| +...+..+...+.. .++.++|...
T Consensus 169 ~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 245 (490)
T 2xm6_A 169 MAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVL 245 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 55555555433 255667777777776 778888888888877754 44556666666654 6788888888
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChHHHHHHHHHHHHc-----CCHHHHHHHHHHH
Q 004938 373 HLYIDKNAFGGDLRVNNAIIDMYAK----CGSLESAREVFERMRR-RNVISWTSMINAFAIH-----GDARNALIFFNKM 442 (722)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m 442 (722)
+....+.+ +...+..+..+|.. .++.++|.+.|++..+ .+...+..+...|... ++.++|+..|++.
T Consensus 246 ~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a 322 (490)
T 2xm6_A 246 FSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS 322 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 88877754 45566677777777 7889999999988765 4667788888888877 8999999999998
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHhCCC
Q 004938 443 KDESIDPNGVTFIGVLYACSHAG---LVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR----ANLLREALELVETMPF 515 (722)
Q Consensus 443 ~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~ 515 (722)
.+.| +...+..+...+...| +.++|.++|+...+. .+...+..|..+|.. .+++++|.+.+++.-.
T Consensus 323 ~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 323 AEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 8864 4456666777777656 789999999998873 456788889999988 8999999999998732
Q ss_pred CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCC---CCchHHHHHHHhhh
Q 004938 516 APNVVIWGSLMAACRV----HGEIELAEFAAKQLLQLDPD---HDGALVLLSNIYAK 565 (722)
Q Consensus 516 ~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 565 (722)
..+...+..|...|.. .++.++|...|+++.+.+|+ ++.....++.++..
T Consensus 396 ~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 396 QGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 3467788888888888 89999999999999999854 66666677666553
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-15 Score=166.40 Aligned_cols=410 Identities=11% Similarity=0.057 Sum_probs=269.0
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004938 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLIT 261 (722)
Q Consensus 182 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 261 (722)
|...|..++. +.+.|++++|..+|+++.+. .+-+...|...+..+.+.|+++.|..+++.+++.. |+...|..++.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 5667888887 47788999999999998865 34456678888888888899999999999888764 57777777665
Q ss_pred HH-HhcCChHHHHH----HHHhccc------CCchHHHHHHHHHHh---------cCCHHHHHHHHhccCCCCcchHHHH
Q 004938 262 MY-ANCGCMDMAKG----LFDKVLL------KNLVVSTAMVSGYSR---------AGQVEDARLIFDQMVEKDLICWSAM 321 (722)
Q Consensus 262 ~~-~~~g~~~~A~~----~~~~~~~------~~~~~~~~li~~~~~---------~g~~~~A~~~f~~~~~~~~~~~~~l 321 (722)
.. ...|+++.|.+ +|++... .+...|...+....+ .|+++.|..+|++..+........+
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 33 34577766655 5554421 234556665554433 4556666666665543211101111
Q ss_pred HHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHH------HHcC---CCCC--------
Q 004938 322 ISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI------DKNA---FGGD-------- 384 (722)
Q Consensus 322 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~------~~~~---~~~~-------- 384 (722)
-..|.. +++.. +..+...++. ...++++.|..++... .+.. ++|+
T Consensus 168 ~~~~~~---~e~~~-------------~~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 229 (530)
T 2ooe_A 168 WRDYNK---YEEGI-------------NIHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQ 229 (530)
T ss_dssp HHHHHH---HHHHH-------------CHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHH
T ss_pred HHHHHH---HHHhh-------------chhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHH
Confidence 111110 00000 0000001110 1234566777766653 2221 2333
Q ss_pred hhHHHHHHHHHHhc----CCH----HHHHHHHHhcCC---CChHHHHHHHHHHHH-------cCCHH-------HHHHHH
Q 004938 385 LRVNNAIIDMYAKC----GSL----ESAREVFERMRR---RNVISWTSMINAFAI-------HGDAR-------NALIFF 439 (722)
Q Consensus 385 ~~~~~~li~~~~~~----g~~----~~A~~~~~~~~~---~~~~~~~~li~~~~~-------~g~~~-------~A~~~~ 439 (722)
...|...+...... ++. +.|..+|++... .+...|..++..+.+ .|+.+ +|..+|
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 24666666544332 232 477788887764 467889988888876 69977 899999
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCc--chHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 004938 440 NKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY--EHYGCMVDLFGRANLLREALELVETM-PF 515 (722)
Q Consensus 440 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 515 (722)
++..+. +.|+ ...+..++..+.+.|++++|..+|+.+.+ .+|+. ..|..++..+.+.|++++|.++|++. ..
T Consensus 310 ~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 310 ERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp HHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 998863 3565 56788888999999999999999999987 34542 47899999999999999999999988 44
Q ss_pred CCC-HHHHHHHHHH-HHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCCc-cC-Cccc
Q 004938 516 APN-VVIWGSLMAA-CRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGIL-KE-RACS 591 (722)
Q Consensus 516 ~p~-~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~-~~-~~~s 591 (722)
.|+ ...|...... +...|+.++|..+|+++++..|+++..+..++.++.+.|+.++|..++++..+.+.. ++ ...-
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~l 465 (530)
T 2ooe_A 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 465 (530)
T ss_dssp TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHH
T ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHH
Confidence 443 3333332222 346899999999999999999999999999999999999999999999999887432 21 1112
Q ss_pred E---EEeCCEEEEEEeCCCCCcchHHHHHHHHHHHH
Q 004938 592 R---IEMNNEVYEFLTADRSHKQTDQIYEKLNEVIS 624 (722)
Q Consensus 592 ~---~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~ 624 (722)
| +.. ............+..++.+.+.
T Consensus 466 w~~~~~~-------e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 466 WARFLAF-------ESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHH-------HHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHH-------HHHcCCHHHHHHHHHHHHHHCc
Confidence 3 322 1111234456777777777764
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.5e-15 Score=158.98 Aligned_cols=361 Identities=11% Similarity=0.023 Sum_probs=299.6
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCChHHHHH
Q 004938 203 LNLFEEMKMSNVEPDEMVLSKILSACSR----AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYAN----CGCMDMAKG 274 (722)
Q Consensus 203 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~ 274 (722)
++.+....+.| +...+..+-..+.. .++++.|...+....+.| +...+..|...|.. .+++++|.+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 44455444433 55666666666666 789999999999988875 67788889999998 899999999
Q ss_pred HHHhcccC-CchHHHHHHHHHHh----cCCHHHHHHHHhccCCC-CcchHHHHHHHHHh----cCCchHHHHHHHHHHhC
Q 004938 275 LFDKVLLK-NLVVSTAMVSGYSR----AGQVEDARLIFDQMVEK-DLICWSAMISGYAE----NNHPQEALKLFNEMQVC 344 (722)
Q Consensus 275 ~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 344 (722)
.|++..+. +...+..+...|.. .++.++|.+.|++..+. +..++..|...|.. .+++++|+++|++..+.
T Consensus 101 ~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 101 WYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ 180 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 99998765 56778888888888 89999999999987655 56788888888887 78999999999999886
Q ss_pred CCCCChhhHHHHHHHHHc----cCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CC
Q 004938 345 GMKPDKVTMLSVISACAH----LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK----CGSLESAREVFERMRR-RN 415 (722)
Q Consensus 345 g~~p~~~t~~~ll~~~~~----~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~ 415 (722)
| +...+..+...+.. .++.++|...+....+.+ +...+..+..+|.. .+++++|.+.|++..+ .+
T Consensus 181 ~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 254 (490)
T 2xm6_A 181 G---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN 254 (490)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC
T ss_pred C---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 5 56777777778877 899999999999998865 56678888888886 8899999999998765 56
Q ss_pred hHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHhHhhcCCCCC
Q 004938 416 VISWTSMINAFAI----HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHA-----GLVDEGREIFASMTNEYNIPPK 486 (722)
Q Consensus 416 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~~~ 486 (722)
...+..+...|.. .++.++|+..|++..+.| +...+..+...+... ++.++|..+|+...+. + +
T Consensus 255 ~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~ 327 (490)
T 2xm6_A 255 SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---D 327 (490)
T ss_dssp HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---C
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---C
Confidence 7788888888887 899999999999998754 455667777777777 8999999999999873 2 4
Q ss_pred cchHHHHHHHHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCCchHHHH
Q 004938 487 YEHYGCMVDLFGRAN---LLREALELVETMPFAPNVVIWGSLMAACRV----HGEIELAEFAAKQLLQLDPDHDGALVLL 559 (722)
Q Consensus 487 ~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l 559 (722)
...+..|..+|.+.| ++++|.+.+++.-...+...+..|...|.. .+++++|...++++.+.+ ++.++..|
T Consensus 328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~L 405 (490)
T 2xm6_A 328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQL 405 (490)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHH
Confidence 567788888888767 789999999988323578889999999988 899999999999998864 56789999
Q ss_pred HHHhhh----CCCcchHHHHHHHHHhCCC
Q 004938 560 SNIYAK----DKRWQDVGELRKSMKERGI 584 (722)
Q Consensus 560 ~~~~~~----~g~~~~a~~~~~~m~~~g~ 584 (722)
+.+|.. .+++++|.+.+++..+.+.
T Consensus 406 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 406 GEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 999998 8999999999999998763
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.5e-14 Score=159.51 Aligned_cols=349 Identities=14% Similarity=0.123 Sum_probs=271.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCC--CCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 004938 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNV--EPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMY 263 (722)
Q Consensus 186 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 263 (722)
-...+.+|...|.+.+|++++++..-.+- .-+...-+.++.+..+. +...+.+.....-+ .....+...+
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Ia 1059 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIA 1059 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHH
Confidence 34567788889999999999998873321 11223444455555555 55666655554432 1234477788
Q ss_pred HhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 004938 264 ANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV 343 (722)
Q Consensus 264 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 343 (722)
...|.+++|..+|++.. ......+.+ +-..+++++|.++.++.. +..+|..+..++.+.|++++|++.|.+.
T Consensus 1060 i~lglyEEAf~IYkKa~-~~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA-- 1131 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-VNTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA-- 1131 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-CHHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc--
Confidence 88999999999999974 222222333 237889999999998774 4678999999999999999999999663
Q ss_pred CCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHH
Q 004938 344 CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMI 423 (722)
Q Consensus 344 ~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 423 (722)
-|...|..++.+|.+.|+++++.+.+...++.. ++..+.+.++.+|++.+++++..... ..++...|..+.
T Consensus 1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVG 1202 (1630)
T ss_pred ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHH
Confidence 467788889999999999999999999988864 44444556999999999999655443 456777888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCH
Q 004938 424 NAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLL 503 (722)
Q Consensus 424 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 503 (722)
..|...|++++|..+|... ..|..+..++.+.|++++|.+.+++.. +..+|..+..++...|++
T Consensus 1203 d~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef 1266 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEF 1266 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHH
Confidence 9999999999999999985 379999999999999999999998763 357888899999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhC--CCcchHHHHHH
Q 004938 504 REALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKD--KRWQDVGELRK 577 (722)
Q Consensus 504 ~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 577 (722)
..|....... .-++..+..++..|...|.+++|+.++++.++++|.+.+.+..|+.+|++- ++..++.+.|.
T Consensus 1267 ~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1267 RLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999988754 335556668899999999999999999999999999999998888888764 56666666655
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.1e-17 Score=171.38 Aligned_cols=259 Identities=10% Similarity=-0.026 Sum_probs=209.5
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHH
Q 004938 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIID 393 (722)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 393 (722)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...+..+++.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888888889999999999999888753 3466778888888888999999999998888864 455778888899
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC-------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHH
Q 004938 394 MYAKCGSLESAREVFERMRRRN-------------VISWTSMINAFAIHGDARNALIFFNKMKDESIDP---NGVTFIGV 457 (722)
Q Consensus 394 ~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~l 457 (722)
.|.+.|++++|.+.|+++.+.+ ...+..+...+...|++++|+..|+++... .| +..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHH
Confidence 9999999999999998876411 223344578889999999999999999985 44 46788999
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH
Q 004938 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEI 535 (722)
Q Consensus 458 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 535 (722)
...+...|++++|...|+.+.+ ..+.+...|..+..+|.+.|++++|++.++++ ...| +..+|..+...+...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALT--VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 9999999999999999999987 34556789999999999999999999999987 4445 478999999999999999
Q ss_pred HHHHHHHHHHHccCCC------------CCchHHHHHHHhhhCCCcchHHHHHHH
Q 004938 536 ELAEFAAKQLLQLDPD------------HDGALVLLSNIYAKDKRWQDVGELRKS 578 (722)
Q Consensus 536 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 578 (722)
++|...+++++++.|+ +...+..++.++...|+.+.+.++.+.
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999877 356788999999999999988877654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.3e-16 Score=154.82 Aligned_cols=268 Identities=9% Similarity=-0.025 Sum_probs=206.1
Q ss_pred HHhcCCHHHHHHHHhccCCCCc----chHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHH
Q 004938 294 YSRAGQVEDARLIFDQMVEKDL----ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369 (722)
Q Consensus 294 ~~~~g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 369 (722)
....|++..|+..++.....++ .....+..+|...|++++|+..++.. -+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHH
Confidence 3445666777766776654432 23455677888888888888766441 355667777788888888888888
Q ss_pred HHHHHHHHHcCC-CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 004938 370 QRIHLYIDKNAF-GGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448 (722)
Q Consensus 370 ~~i~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 448 (722)
.+.++.++..+. +.+...+..+...|...|++++|.+.|++ ..+...+..++..|.+.|+.++|++.|+++.+. .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 888888887664 34566677788899999999999999998 567889999999999999999999999999985 5
Q ss_pred CCHHHH---HHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 004938 449 PNGVTF---IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWG 523 (722)
Q Consensus 449 p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 523 (722)
|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.++++ ...| +..+|.
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 765321 12334444568999999999999984 5677889999999999999999999999997 4455 577899
Q ss_pred HHHHHHHHcCCHHH-HHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHH
Q 004938 524 SLMAACRVHGEIEL-AEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGEL 575 (722)
Q Consensus 524 ~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 575 (722)
.++..+...|+.++ +..+++++++++|+++.. .+...+.+.++++..-
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHH
Confidence 99999999998865 678999999999998743 3445555666655543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-14 Score=157.40 Aligned_cols=328 Identities=13% Similarity=0.031 Sum_probs=205.8
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHhccc-------C----CchHHHHHHHHHHhc--CCHHHHHHHHhccCC--C-Cc
Q 004938 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLL-------K----NLVVSTAMVSGYSRA--GQVEDARLIFDQMVE--K-DL 315 (722)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~--g~~~~A~~~f~~~~~--~-~~ 315 (722)
...+|+.+..+|...|++++|...+++... + ...++..+..++.+. +++++|...|++..+ | ++
T Consensus 93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~ 172 (472)
T 4g1t_A 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP 172 (472)
T ss_dssp THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH
Confidence 456788888999999999999988877632 1 234555555555554 468899999988743 2 44
Q ss_pred chHHHHHHH---HHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCCchHHHHHHHHHHHcCCCCChhHH
Q 004938 316 ICWSAMISG---YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH----LGVLDQAQRIHLYIDKNAFGGDLRVN 388 (722)
Q Consensus 316 ~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~i~~~~~~~~~~~~~~~~ 388 (722)
..+..+... +...++.++|++.|++..+.. +.+..++..+...+.. .++.++|.+.++.+.+.. +.+..++
T Consensus 173 ~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~ 250 (472)
T 4g1t_A 173 EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVL 250 (472)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHH
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHH
Confidence 555555444 345677888999988887753 2244455555444443 467788888888887764 4566778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHHcC
Q 004938 389 NAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIH-------------------GDARNALIFFNKMKDES 446 (722)
Q Consensus 389 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-------------------g~~~~A~~~~~~m~~~g 446 (722)
..+...|.+.|++++|...|++..+ .+..+|..+...|... +..++|+..|++....
T Consensus 251 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~- 329 (472)
T 4g1t_A 251 RSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA- 329 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc-
Confidence 8888899999999999999988764 4556777777776532 2356677777777663
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCc--chHHHHHHH-HHhcCCHHHHHHHHHhC-CCCCCHHH
Q 004938 447 IDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY--EHYGCMVDL-FGRANLLREALELVETM-PFAPNVVI 521 (722)
Q Consensus 447 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~-~~~~g~~~~A~~~~~~~-~~~p~~~~ 521 (722)
.|+ ..++..+...+...|++++|...|+++.+. ...+.. ..+..+... +...|++++|++.+++. .+.|+...
T Consensus 330 -~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~ 407 (472)
T 4g1t_A 330 -NDNLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSRE 407 (472)
T ss_dssp -CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHH
T ss_pred -CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH
Confidence 343 446777778888888888888888887762 211111 122333322 34678888888888776 55666443
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCCccCCcccEE
Q 004938 522 WGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRI 593 (722)
Q Consensus 522 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~ 593 (722)
+... .+.+..++++.++.+|+++.++..|+.+|...|++++|.+.+++..+.+-......+|+
T Consensus 408 ~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 408 KEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 3222 34456677788888999999999999999999999999999999988775544455553
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.71 E-value=8.6e-16 Score=160.39 Aligned_cols=127 Identities=15% Similarity=0.067 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHH
Q 004938 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMV 494 (722)
Q Consensus 416 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 494 (722)
..+|..+...|...|++++|+..|+++... .|+ ..++..+...+...|++++|...|+.+.+. .+.+...+..+.
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~ 292 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLG 292 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHH
Confidence 334444444444444444444444444442 222 334444444445555555555555544431 222334444555
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004938 495 DLFGRANLLREALELVETM-PFAP------------NVVIWGSLMAACRVHGEIELAEFAAKQLL 546 (722)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~~-~~~p------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 546 (722)
.+|.+.|++++|.+.++++ ...| ...+|..+..++...|+.++|..++++.+
T Consensus 293 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 293 ISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 5555555555555555443 1111 14566666666666666666666655443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.70 E-value=5.4e-16 Score=158.86 Aligned_cols=260 Identities=10% Similarity=-0.052 Sum_probs=197.5
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 004938 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDM 394 (722)
Q Consensus 315 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 394 (722)
...|..+...+...|++++|+.+|+++.+.. +.+..++..+..++...|++++|...+..+.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3455666667777777777777777776643 2345566666667777777777777777776653 3456666777777
Q ss_pred HHhcCCHHHHHHHHHhcCC---CChHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004938 395 YAKCGSLESAREVFERMRR---RNVISWTSM--------------IN-AFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456 (722)
Q Consensus 395 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 456 (722)
|...|++++|.+.|+++.+ .+...+..+ .. .+...|++++|+..++++.+.. +.+...+..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 7777777777777776643 122222222 22 3667888999999999998852 335678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 004938 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGE 534 (722)
Q Consensus 457 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 534 (722)
+...+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 889999999999999999999873 4456788999999999999999999999987 3334 57889999999999999
Q ss_pred HHHHHHHHHHHHccCCC------------CCchHHHHHHHhhhCCCcchHHHHHHHH
Q 004938 535 IELAEFAAKQLLQLDPD------------HDGALVLLSNIYAKDKRWQDVGELRKSM 579 (722)
Q Consensus 535 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 579 (722)
+++|...++++++..|+ ++..+..++.+|...|++++|..++++.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999999 6788999999999999999999988754
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=3e-16 Score=163.87 Aligned_cols=231 Identities=11% Similarity=0.018 Sum_probs=196.7
Q ss_pred ChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHH
Q 004938 349 DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINA 425 (722)
Q Consensus 349 ~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 425 (722)
+...+..+...+.+.|++++|...++.+++.. +.+..++..+...|.+.|++++|.+.|+++.+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44568888899999999999999999999874 55788999999999999999999999998764 567899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHH-----------HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHH
Q 004938 426 FAIHGDARNALIFFNKMKDESIDPNGV-----------TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMV 494 (722)
Q Consensus 426 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-----------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 494 (722)
|...|++++|+..|+++.+. .|+.. .+..+...+...|++++|.++|+.+.+.....++...+..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999883 44432 233457788999999999999999998532222678899999
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchH
Q 004938 495 DLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDV 572 (722)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 572 (722)
..|.+.|++++|++.++++ ...| +..+|..+...+...|++++|+..+++++++.|+++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999987 3344 5789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 004938 573 GELRKSMKER 582 (722)
Q Consensus 573 ~~~~~~m~~~ 582 (722)
.+.++++.+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999874
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-15 Score=151.03 Aligned_cols=247 Identities=12% Similarity=0.078 Sum_probs=202.3
Q ss_pred HHHHHhcCCchHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 004938 322 ISGYAENNHPQEALKLFNEMQVCGMKPDK--VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399 (722)
Q Consensus 322 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g 399 (722)
|.-....|++.+|+..+++.... .|+. .....+..++...|+++.|...++. .-+|+...+..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34566789999999999876543 4443 3556678899999999999875543 24567788889999999999
Q ss_pred CHHHHHHHHHhcC----CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004938 400 SLESAREVFERMR----RR-NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIF 474 (722)
Q Consensus 400 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 474 (722)
+.++|.+.++++. .| +...+..+...|.+.|++++|++.+++ ..+...+..+...+.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999874 23 566777888999999999999999987 456778888999999999999999999
Q ss_pred HHhHhhcCCCCCcchH---HHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004938 475 ASMTNEYNIPPKYEHY---GCMVDLFGRANLLREALELVETM--PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549 (722)
Q Consensus 475 ~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 549 (722)
+.+.+. .|+.... ..++..+...|++++|..+|+++ ..+++...|+.+..++...|++++|+..++++++++
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999874 3553211 23345555669999999999998 334578899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHhhhCCCcch-HHHHHHHHHhCC
Q 004938 550 PDHDGALVLLSNIYAKDKRWQD-VGELRKSMKERG 583 (722)
Q Consensus 550 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~g 583 (722)
|+++.++..++.++...|++++ +.++++++.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987 568888887743
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.5e-14 Score=153.75 Aligned_cols=377 Identities=10% Similarity=0.026 Sum_probs=188.6
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHhcCC-----------CC-CcccHHHHHHHHHhCCChhHHHHHHHHHHHC-----C-C
Q 004938 153 FVQTGLVGMYGACGKILDARLMFDKMS-----------YR-DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS-----N-V 214 (722)
Q Consensus 153 ~~~~~li~~~~~~g~~~~A~~~f~~m~-----------~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~ 214 (722)
..||.|...|...|+.++|++.|++.. .+ ..++|+.+...|...|++++|...+++..+. + .
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 345555555555555555555554321 11 2334556666666666666666666554321 0 1
Q ss_pred CC-CHhHHHHHHHHHH--ccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH---HHhcCChHHHHHHHHhccc--C-Cch
Q 004938 215 EP-DEMVLSKILSACS--RAGNLSYGEAVHEFIIDNNVALDAHLQSTLITM---YANCGCMDMAKGLFDKVLL--K-NLV 285 (722)
Q Consensus 215 ~p-~~~t~~~ll~~~~--~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~--~-~~~ 285 (722)
.+ ...++...-.++. ..+++++|...|+.+++..+ .++..+..+... +...++.++|.+.|++..+ | +..
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~ 210 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence 11 1233433333332 23456667777776666532 234444444433 2334555666666655432 1 233
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHhccC---CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCC-hhhHHHHH
Q 004938 286 VSTAMVSGYSR----AGQVEDARLIFDQMV---EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD-KVTMLSVI 357 (722)
Q Consensus 286 ~~~~li~~~~~----~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll 357 (722)
++..+...+.. .|+.++|.+.+++.. ..+..++..+...|...|++++|+..|++..+. .|+ ..++..+.
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg 288 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHH
Confidence 34433333332 345556666666542 234556777777777888888888888777764 343 33344443
Q ss_pred HHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHH
Q 004938 358 SACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARN 434 (722)
Q Consensus 358 ~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 434 (722)
.++...+.. ..... ...........+..+.|...|+...+ .+..+|..+...|...|++++
T Consensus 289 ~~y~~~~~~---------~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~ 352 (472)
T 4g1t_A 289 CCYRAKVFQ---------VMNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEE 352 (472)
T ss_dssp HHHHHHHHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHH---------hhhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHH
Confidence 333211100 00000 00000111112335677777776543 456788889999999999999
Q ss_pred HHHHHHHHHHcCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 004938 435 ALIFFNKMKDESIDPNGV--TFIGVLY-ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVE 511 (722)
Q Consensus 435 A~~~~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 511 (722)
|+..|++..+....|... .+..+.. ...+.|+.++|+..|.+..+ +.|+...... ..+.+..+++
T Consensus 353 A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~---------~~~~l~~~~~ 420 (472)
T 4g1t_A 353 AEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEK---------MKDKLQKIAK 420 (472)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHH---------HHHHHHHHHH
Confidence 999999998853332221 2233322 34578999999999998876 3454332222 2233334444
Q ss_pred hC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHH
Q 004938 512 TM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLS 560 (722)
Q Consensus 512 ~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 560 (722)
+. ...| +..+|..|...+...|++++|++.|+++++++|.+|.+..-++
T Consensus 421 ~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 421 MRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 33 2233 5678999999999999999999999999999998887665544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.8e-15 Score=153.45 Aligned_cols=270 Identities=10% Similarity=0.030 Sum_probs=156.8
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHhcccC---CchHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHH
Q 004938 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLK---NLVVSTAMVSGYSRAGQVEDARLIFDQMVE---KDLICWSAMISGYA 326 (722)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~ 326 (722)
...+..+...+.+.|++++|..+|+++... +...|..+...+.+.|++++|...|+++.+ .+..+|..+...+.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 344556666777777777777777665322 334455555555555555555555555422 13344555555555
Q ss_pred hcCCchHHHHHHHHHHhCCCCCChh-hHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHH-HH-HHHhcCCHHH
Q 004938 327 ENNHPQEALKLFNEMQVCGMKPDKV-TMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI-ID-MYAKCGSLES 403 (722)
Q Consensus 327 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~~ 403 (722)
..|++++|++.|+++.... |+.. .+..+...+ ++......+ .. .+...|++++
T Consensus 101 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQ--PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTS--TTTTTC------------------------------------------CCTTSHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHH
Confidence 5555555555555555432 2211 111110000 000000011 11 2555666677
Q ss_pred HHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 004938 404 AREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDP-NGVTFIGVLYACSHAGLVDEGREIFASMTN 479 (722)
Q Consensus 404 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 479 (722)
|.+.++++.+ .+...|..+...|...|++++|+..++++.+. .| +..++..+...+...|++++|...|+.+.+
T Consensus 157 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 157 CRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777666542 35566777777777777777777777777664 33 345667777777777777777777777765
Q ss_pred hcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004938 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN-------------VVIWGSLMAACRVHGEIELAEFAAKQL 545 (722)
Q Consensus 480 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~ 545 (722)
. .+.+...+..+...|.+.|++++|.+.++++ ...|+ ..+|..+..++...|+.++|...++++
T Consensus 235 ~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 235 I--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred c--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2 3345566777777777777777777777765 22233 567778888888888888888887766
Q ss_pred HccCC
Q 004938 546 LQLDP 550 (722)
Q Consensus 546 ~~~~p 550 (722)
++..|
T Consensus 313 l~~~~ 317 (327)
T 3cv0_A 313 VEPFA 317 (327)
T ss_dssp SHHHH
T ss_pred HHhcc
Confidence 65443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.4e-17 Score=177.18 Aligned_cols=131 Identities=11% Similarity=0.123 Sum_probs=115.2
Q ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHhcCC-------CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHH
Q 004938 149 GSDPFVQTGLVGMYGACGKILDARLMFDKMS-------YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVL 221 (722)
Q Consensus 149 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 221 (722)
..-..+||+||++||++|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 4445789999999999999999999997763 589999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCh-HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhc
Q 004938 222 SKILSACSRAGNL-SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV 279 (722)
Q Consensus 222 ~~ll~~~~~~g~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 279 (722)
+++|.++++.|+. +.|.+++++|.+.|+.||..+|+.++..+.+.+-++...++...+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 9999999999985 789999999999999999999999998877766555555554333
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-16 Score=173.25 Aligned_cols=151 Identities=10% Similarity=0.119 Sum_probs=97.6
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHh---CCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHH
Q 004938 316 ICWSAMISGYAENNHPQEALKLFNEMQV---CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAII 392 (722)
Q Consensus 316 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li 392 (722)
.+||+||.+|++.|+.++|.++|++|.+ .|+.||.+|||++|.+|++.|++++|.++|..|.+.|+.|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P--------- 198 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP--------- 198 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC---------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---------
Confidence 4666666666666666666666665542 3556666666666666666666666666666665555555
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004938 393 DMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD-ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGR 471 (722)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 471 (722)
|++|||+||.++++.|+ .++|.++|++|.+.|+.||.+||++++.++.+.+-++..
T Consensus 199 ----------------------DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~V- 255 (1134)
T 3spa_A 199 ----------------------DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV- 255 (1134)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHH-
T ss_pred ----------------------cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHH-
Confidence 55555556666666666 467889999999999999999999998877665444443
Q ss_pred HHHHHhHhhcCCC----CCcchHHHHHHHHHhcC
Q 004938 472 EIFASMTNEYNIP----PKYEHYGCMVDLFGRAN 501 (722)
Q Consensus 472 ~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g 501 (722)
+.+..++..+ |...+...|.+.|.+.+
T Consensus 256 ---rkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 256 ---HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp ---GGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred ---HHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 3333222221 22455667888888766
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.7e-14 Score=138.83 Aligned_cols=214 Identities=14% Similarity=0.051 Sum_probs=143.9
Q ss_pred HHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C----C----hHHHHHHHHH
Q 004938 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR--R----N----VISWTSMINA 425 (722)
Q Consensus 356 ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~li~~ 425 (722)
+...+...|++++|...+..+++.. .+..++..+...|...|++++|.+.|++..+ | + ...|..+...
T Consensus 11 ~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 88 (258)
T 3uq3_A 11 EGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNA 88 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHH
Confidence 3333444444444444444444433 3344444445555555555555555544432 1 1 4566677777
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHH
Q 004938 426 FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLRE 505 (722)
Q Consensus 426 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 505 (722)
|...|++++|+..|++.... .|+. ..+...|++++|...++.+.. ..+.+...+..+...+...|++++
T Consensus 89 ~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 89 YHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHH
Confidence 77777777777777777763 4553 235556777888888877765 233345677778888888888888
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 506 ALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 506 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
|.+.++++ ...| +..+|..+...+...|++++|...++++++.+|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 158 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 158 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 88888776 3233 56788888888888889999999999998888888888888889999999999998888887664
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.1e-14 Score=135.53 Aligned_cols=194 Identities=10% Similarity=-0.007 Sum_probs=154.8
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 004938 382 GGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGV 457 (722)
Q Consensus 382 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 457 (722)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 45667778888888899999999999988764 45678888889999999999999999998884 565 4577888
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 004938 458 LYACSHA-----------GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPNVVIWGSL 525 (722)
Q Consensus 458 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 525 (722)
..++... |++++|...|+...+ ..|.+...+..+..+|...|++++|++.+++. ....+...|..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 8888888 999999999999987 33445788899999999999999999999987 222678899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHH
Q 004938 526 MAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSM 579 (722)
Q Consensus 526 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 579 (722)
...+...|++++|+..++++++++|+++..+..++.++...|++++|.+.+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988765
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=7.3e-14 Score=139.05 Aligned_cols=241 Identities=10% Similarity=-0.052 Sum_probs=190.8
Q ss_pred hcCCchHHHHHHHHHHhCCC--C-CChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 004938 327 ENNHPQEALKLFNEMQVCGM--K-PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLES 403 (722)
Q Consensus 327 ~~g~~~~A~~~~~~m~~~g~--~-p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 403 (722)
..|++++|+..|+++.+... . .+..++..+..++...|++++|...+..+++.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34778888888888887532 1 135567777888888899999999998888864 4567888889999999999999
Q ss_pred HHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhh
Q 004938 404 AREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480 (722)
Q Consensus 404 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 480 (722)
|.+.|++..+ .+...|..+...|...|++++|+..|+++.+ ..|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999998764 4678899999999999999999999999998 4677665555666667889999999999888773
Q ss_pred cCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCc
Q 004938 481 YNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN-----VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554 (722)
Q Consensus 481 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 554 (722)
.+++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++.+|++..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 44554444 4777788888999999999887 33332 578889999999999999999999999999998754
Q ss_pred hHHHHHHHhhhCCCcchHHHHH
Q 004938 555 ALVLLSNIYAKDKRWQDVGELR 576 (722)
Q Consensus 555 ~~~~l~~~~~~~g~~~~a~~~~ 576 (722)
. .+.++...|++++|.+.+
T Consensus 251 ~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 E---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHHhhHHHH
Confidence 3 356778889998887765
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.4e-14 Score=138.38 Aligned_cols=234 Identities=13% Similarity=0.006 Sum_probs=184.8
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCC--CC----hhHHH
Q 004938 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG--GD----LRVNN 389 (722)
Q Consensus 316 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~--~~----~~~~~ 389 (722)
..|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...+..+++.... ++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456677778888888888888888887765 67777788888888888888888888877764211 11 46778
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 004938 390 AIIDMYAKCGSLESAREVFERMRR--RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGL 466 (722)
Q Consensus 390 ~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 466 (722)
.+...|.+.|++++|.+.|++..+ ++. ..+...|++++|+..++++... .|+ ...+..+...+...|+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcC
Confidence 888888889999999888888764 442 3456678889999999998883 454 3467788888999999
Q ss_pred HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004938 467 VDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQ 544 (722)
Q Consensus 467 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 544 (722)
+++|...|+.+.+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999998873 4556788899999999999999999999887 3344 478899999999999999999999999
Q ss_pred HHccC------CCCCchHHHHHHH
Q 004938 545 LLQLD------PDHDGALVLLSNI 562 (722)
Q Consensus 545 ~~~~~------p~~~~~~~~l~~~ 562 (722)
+++++ |++...+..+..+
T Consensus 233 a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 233 ARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHhChhhcCCCchHHHHHHHHHh
Confidence 99998 8776666655543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-13 Score=137.89 Aligned_cols=243 Identities=13% Similarity=-0.001 Sum_probs=120.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCC---CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHc
Q 004938 288 TAMVSGYSRAGQVEDARLIFDQMVEK---DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK--VTMLSVISACAH 362 (722)
Q Consensus 288 ~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~ 362 (722)
......+.+.|++++|...|++..+. +...|..+...|...|++++|+..|++..+.+-.|+. .++..+...+..
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 33444555555555555555554221 3334555555555555555555555555542211111 114444444555
Q ss_pred cCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004938 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM 442 (722)
Q Consensus 363 ~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 442 (722)
.|++++|...+..+.+.. +.+..++..+...|...|++++|.+.|+ +.
T Consensus 87 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~-------------------------------~a 134 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYME-------------------------------KQ 134 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHG-------------------------------GG
T ss_pred cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHH-------------------------------HH
Confidence 555555555555554432 2233444444444444555555554444 44
Q ss_pred HHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCC---HHHHHHHHHhC----C
Q 004938 443 KDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL---LREALELVETM----P 514 (722)
Q Consensus 443 ~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~----~ 514 (722)
.+. .|+ ...+..+...+...+++++|.+.|+.+.+. .+.+...+..+...+...|+ +++|...++++ .
T Consensus 135 l~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 210 (272)
T 3u4t_A 135 IRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA 210 (272)
T ss_dssp CCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred hhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence 432 222 222333331222333555555555544441 22223344444444444444 43444444333 1
Q ss_pred CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhC
Q 004938 515 FAPN------VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKD 566 (722)
Q Consensus 515 ~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 566 (722)
..|+ ..+|..+...+...|++++|...++++++++|+++.+...+..+....
T Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 211 PGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp GGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 1122 256777888899999999999999999999999987777766655443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.3e-13 Score=141.52 Aligned_cols=377 Identities=8% Similarity=-0.012 Sum_probs=174.7
Q ss_pred HHHHHHhCCCHHHHHHHHhcCCCC-CcccHHHHHHHHHhCCCh---hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccC-
Q 004938 158 LVGMYGACGKILDARLMFDKMSYR-DIVPWSVMIDGYFQNGLF---DEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG- 232 (722)
Q Consensus 158 li~~~~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g- 232 (722)
+...+.+.|++++|.++|++..++ +...+..|...|...|+. ++|++.|++..+. +...+..+-..+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 445556667777777777665432 444555566666666666 6777777666543 3333444444333333
Q ss_pred ----ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHh
Q 004938 233 ----NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308 (722)
Q Consensus 233 ----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 308 (722)
+.++|...++...+.|.. ..+..|..+|...+..+.+.+.++. +.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~----------------------------~~ 133 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQ----------------------------IS 133 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHH----------------------------HH
T ss_pred CCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHH----------------------------HH
Confidence 556677777776665532 2555566666555443332222111 11
Q ss_pred ccC-CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC---CchHHHHHHHHHHHcCCCCC
Q 004938 309 QMV-EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG---VLDQAQRIHLYIDKNAFGGD 384 (722)
Q Consensus 309 ~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~a~~i~~~~~~~~~~~~ 384 (722)
... ..+...+..+...|...+.++++........+.-...+...+..+...+...| +.++|...+....+.| +++
T Consensus 134 ~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~ 212 (452)
T 3e4b_A 134 QWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVT 212 (452)
T ss_dssp HHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSC
T ss_pred HHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHH
Confidence 111 11233444444444444433333332222211111112223444444444444 4445555555544443 222
Q ss_pred hhHHHHHHHHHHhc----CCHHHHHHHHHhcCCCChHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004938 385 LRVNNAIIDMYAKC----GSLESAREVFERMRRRNVISWTSMINA-F--AIHGDARNALIFFNKMKDESIDPNGVTFIGV 457 (722)
Q Consensus 385 ~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 457 (722)
...+..|..+|... +++++|.+.|++....+...+..+... | ...++.++|++.|++..+.| +...+..+
T Consensus 213 a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~L 289 (452)
T 3e4b_A 213 AQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLL 289 (452)
T ss_dssp HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 22223444444333 456666666655553344455555554 2 34666777777777766654 44445555
Q ss_pred HHHHHhcC-----CHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004938 458 LYACSHAG-----LVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR----ANLLREALELVETMPFAPNVVIWGSLMAA 528 (722)
Q Consensus 458 l~a~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~ 528 (722)
...|. .| ++++|.++|+... +-+...+..|..+|.. ..++++|...|++.-...+......|...
T Consensus 290 g~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~ 363 (452)
T 3e4b_A 290 GKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQL 363 (452)
T ss_dssp HHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred HHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 55454 34 6777777776554 2344555666666654 33777777777766212233344445555
Q ss_pred HHH----cCCHHHHHHHHHHHHccCCCCCchHHHHHHHh--hhCCCcchHHHHHHHHHh
Q 004938 529 CRV----HGEIELAEFAAKQLLQLDPDHDGALVLLSNIY--AKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 529 ~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~~~~m~~ 581 (722)
|.. ..+.++|...++++.+.++.. ....+..+. ...+..++|.++.++-++
T Consensus 364 y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 364 FSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 543 457888888888887766543 333333333 233455566666555443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3.1e-12 Score=125.47 Aligned_cols=166 Identities=13% Similarity=0.015 Sum_probs=91.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 004938 388 NNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSH 463 (722)
Q Consensus 388 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~ 463 (722)
+..+...|.+.|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++...+..|+ ...+..+...+..
T Consensus 74 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 153 (252)
T 2ho1_A 74 HAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ 153 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH
Confidence 33344444444444444444443321 2344455555555555666666666655554223343 2345555556666
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 004938 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFA 541 (722)
Q Consensus 464 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 541 (722)
.|++++|..+|+.+.+. .+.+...+..++..|.+.|++++|.+.++++ ...| +...|..+...+...|+.++|...
T Consensus 154 ~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 231 (252)
T 2ho1_A 154 MKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASY 231 (252)
T ss_dssp TTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 66666666666666542 2333455566666666666666666666655 2223 445566666666777777777777
Q ss_pred HHHHHccCCCCCch
Q 004938 542 AKQLLQLDPDHDGA 555 (722)
Q Consensus 542 ~~~~~~~~p~~~~~ 555 (722)
++++++..|+++..
T Consensus 232 ~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 232 GLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHHCTTSHHH
T ss_pred HHHHHHHCCCCHHH
Confidence 77777777766543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.9e-12 Score=137.22 Aligned_cols=342 Identities=10% Similarity=0.006 Sum_probs=221.6
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCh---HHHHHHHHhcccCCchHHHHHHHHHHhcC----
Q 004938 226 SACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCM---DMAKGLFDKVLLKNLVVSTAMVSGYSRAG---- 298 (722)
Q Consensus 226 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g---- 298 (722)
..+.+.|++++|.+.+..+.+.| +...+..|..+|...|+. ++|...|++..+.+...+..+...+...+
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Confidence 33445566666666666665554 223334445555555655 66666666665555555555555444443
Q ss_pred -CHHHHHHHHhccCCC-CcchHHHHHHHHHhcCCch---HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHH
Q 004938 299 -QVEDARLIFDQMVEK-DLICWSAMISGYAENNHPQ---EALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIH 373 (722)
Q Consensus 299 -~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~ 373 (722)
+.++|...|++..++ +..++..|...|...+..+ ++++.+......| +......+...+...+.++++....
T Consensus 88 ~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a 164 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDV 164 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHH
Confidence 566777777776544 5567788888887766543 4566666665544 3445666667777777665555443
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhcCC---CChHHHHHHHHHHHHc----CCHHHHHHHHHHHH
Q 004938 374 LYIDKNAFGGDLRVNNAIIDMYAKCG---SLESAREVFERMRR---RNVISWTSMINAFAIH----GDARNALIFFNKMK 443 (722)
Q Consensus 374 ~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~ 443 (722)
....+.-...+...+..|..+|.+.| +.++|.+.|++..+ ++...+..+...|... +++++|+..|++..
T Consensus 165 ~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 165 ERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 33333323344458889999999999 99999999988764 3444456777777554 68999999999987
Q ss_pred HcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcC-----CHHHHHHHHHhCCC
Q 004938 444 DESIDPNGVTFIGVLYA-C--SHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRAN-----LLREALELVETMPF 515 (722)
Q Consensus 444 ~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~ 515 (722)
.| +...+..+... + ...++.++|.++|+...+. | +...+..|..+|. .| ++++|.+.|++.-
T Consensus 245 -~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa- 314 (452)
T 3e4b_A 245 -PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV- 314 (452)
T ss_dssp -GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-
T ss_pred -CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-
Confidence 33 33445555554 3 4689999999999998873 3 5667788888887 55 9999999999998
Q ss_pred CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhh----CCCcchHHHHHHHHHhCCCc
Q 004938 516 APNVVIWGSLMAACRV----HGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAK----DKRWQDVGELRKSMKERGIL 585 (722)
Q Consensus 516 ~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~ 585 (722)
..+...+..|...|.. ..++++|...|+++.+. .++.....|+.+|.. ..+.++|...++...+.|..
T Consensus 315 ~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 315 GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 5677888888877765 34999999999999874 556789999999975 45899999999999888753
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-12 Score=135.22 Aligned_cols=243 Identities=10% Similarity=0.037 Sum_probs=199.6
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCC-chHHHHHHHHHHHcCCCCChhHHHHHH
Q 004938 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKP-DKVTMLSVISACAHLGV-LDQAQRIHLYIDKNAFGGDLRVNNAII 392 (722)
Q Consensus 315 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~-~~~a~~i~~~~~~~~~~~~~~~~~~li 392 (722)
...|+.+...+.+.|++++|+..|++.+.. .| +...|..+..++...|+ +++|...++.+++.. +.+..+|+.+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 356888888899999999999999999875 44 45677788888888996 999999999998875 45678889999
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh-cCCH
Q 004938 393 DMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSH-AGLV 467 (722)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~-~g~~ 467 (722)
.+|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|+++++. .|+ ...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999998764 57789999999999999999999999999984 565 5678888888888 6665
Q ss_pred HHH-----HHHHHHhHhhcCCCCCcchHHHHHHHHHhcC--CHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcC------
Q 004938 468 DEG-----REIFASMTNEYNIPPKYEHYGCMVDLFGRAN--LLREALELVETMPFAPN-VVIWGSLMAACRVHG------ 533 (722)
Q Consensus 468 ~~a-----~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g------ 533 (722)
++| ++.|+.+++ ..+.+...|..+..+|.+.| ++++|++.++++...|+ ...+..+...+...|
T Consensus 252 ~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp SHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred hHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 777 588888876 33445678888999999888 68999999988855554 578888888888764
Q ss_pred --C-HHHHHHHHHHH-HccCCCCCchHHHHHHHhh
Q 004938 534 --E-IELAEFAAKQL-LQLDPDHDGALVLLSNIYA 564 (722)
Q Consensus 534 --~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~ 564 (722)
+ +++|+.+++++ .+++|.....|..++..+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 2 58999999999 9999999888888777654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=5.1e-13 Score=130.10 Aligned_cols=172 Identities=13% Similarity=0.065 Sum_probs=92.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004938 388 NNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHA 464 (722)
Q Consensus 388 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 464 (722)
+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...
T Consensus 60 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 138 (243)
T 2q7f_A 60 YINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKL 138 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence 33333444444444444444443321 234445555555555555555655555555531 22344455555555566
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 004938 465 GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAA 542 (722)
Q Consensus 465 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 542 (722)
|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...+
T Consensus 139 ~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 216 (243)
T 2q7f_A 139 EQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEML 216 (243)
T ss_dssp SCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred ccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 6666666666655542 2334445555666666666666666666554 2222 3556666666677777777777777
Q ss_pred HHHHccCCCCCchHHHHHHH
Q 004938 543 KQLLQLDPDHDGALVLLSNI 562 (722)
Q Consensus 543 ~~~~~~~p~~~~~~~~l~~~ 562 (722)
+++++++|+++..+..++.+
T Consensus 217 ~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 217 DKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHccCcchHHHHHHHHHH
Confidence 77777777766555554443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.48 E-value=8e-11 Score=130.40 Aligned_cols=435 Identities=9% Similarity=0.048 Sum_probs=284.8
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCC---HHH
Q 004938 94 WSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGK---ILD 170 (722)
Q Consensus 94 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~ 170 (722)
+.....+.+..|++.+...+ -|..+|..++..+.+.+.++.++.+|+.++.. ++.....|...+..-.+.|+ .+.
T Consensus 44 ~~~~~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~ 121 (679)
T 4e6h_A 44 RVRDESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAV 121 (679)
T ss_dssp --CCCSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHH
T ss_pred cccCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHH
Confidence 33445666767777766654 37888999999888888999999999998887 46677788888888888888 999
Q ss_pred HHHHHhcCCC-----CCcccHHHHHHHHHhCCCh--------hHHHHHHHHHH-HCCC-CCC-HhHHHHHHHHHHc----
Q 004938 171 ARLMFDKMSY-----RDIVPWSVMIDGYFQNGLF--------DEVLNLFEEMK-MSNV-EPD-EMVLSKILSACSR---- 230 (722)
Q Consensus 171 A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~-~~g~-~p~-~~t~~~ll~~~~~---- 230 (722)
+..+|++... +++..|..-+....+.++. +...++|+... ..|. .|+ ...|...+.....
T Consensus 122 v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~ 201 (679)
T 4e6h_A 122 IEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPV 201 (679)
T ss_dssp HHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcccc
Confidence 9999987653 5555677766655554443 23346666654 3465 554 3455555544322
Q ss_pred -----cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHH
Q 004938 231 -----AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305 (722)
Q Consensus 231 -----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 305 (722)
.++++.+..+|..++......-..+|......-...+. ..+.+++.+. ..+++.|..
T Consensus 202 ~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~-----------------~~~y~~Ar~ 263 (679)
T 4e6h_A 202 NKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL-----------------SAQYMNARS 263 (679)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH-----------------HHHHHHHHH
T ss_pred CcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh-----------------hHHHHHHHH
Confidence 23456677777777753222122333322221111111 1122221110 011222222
Q ss_pred HHhc-------cCC--------------C--C------cchHHHHHHHHHhcCC-------chHHHHHHHHHHhCCCCCC
Q 004938 306 IFDQ-------MVE--------------K--D------LICWSAMISGYAENNH-------PQEALKLFNEMQVCGMKPD 349 (722)
Q Consensus 306 ~f~~-------~~~--------------~--~------~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~ 349 (722)
.+.+ +.. | + ...|...+.---.++. .+.+..+|++.+.. .+-+
T Consensus 264 ~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~ 342 (679)
T 4e6h_A 264 LYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFA 342 (679)
T ss_dssp HHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTC
T ss_pred HHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCC
Confidence 2221 100 0 0 1346555554433331 23355678887765 2335
Q ss_pred hhhHHHHHHHHHccCCchHHH-HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------------CC
Q 004938 350 KVTMLSVISACAHLGVLDQAQ-RIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR-------------RN 415 (722)
Q Consensus 350 ~~t~~~ll~~~~~~g~~~~a~-~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------~~ 415 (722)
...|...+.-+...|+.+.|. .+++..+.. ++.+...+-.++....+.|+++.|.++|+++.. |+
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 667777777777889999996 999999875 456677788899999999999999999998763 21
Q ss_pred ------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhHhhc
Q 004938 416 ------------VISWTSMINAFAIHGDARNALIFFNKMKDE-SIDPNGVTFIGVLYACSHA-GLVDEGREIFASMTNEY 481 (722)
Q Consensus 416 ------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~ 481 (722)
...|-..+....+.|+.+.|..+|.+..+. +. +....|...+..-.+. ++.+.|..+|+...+.
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~- 499 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY- 499 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-
Confidence 236888888888899999999999999875 21 1223343332222333 5589999999999985
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCC
Q 004938 482 NIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP----NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD 553 (722)
Q Consensus 482 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 553 (722)
.+.+...+...++.....|+.+.|..+|++. ...| ....|...+.--..+|+.+.+..+.+++.+..|+++
T Consensus 500 -~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 500 -FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp -HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred -CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 4455667788899889999999999999987 3333 246899999999999999999999999999999875
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.3e-12 Score=126.39 Aligned_cols=197 Identities=10% Similarity=-0.041 Sum_probs=171.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004938 385 LRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYAC 461 (722)
Q Consensus 385 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 461 (722)
...+..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45667788888899999999999988753 467889999999999999999999999998852 33567888889999
Q ss_pred HhcCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 004938 462 SHAGLVDEGREIFASMTNEYNIPP-KYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELA 538 (722)
Q Consensus 462 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 538 (722)
...|++++|.++++.+.+ .+..| +...+..++..|.+.|++++|.+.++++ ...| +...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999886 23444 4677888999999999999999999987 3334 578899999999999999999
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 539 EFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 539 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
...++++++..|++...+..++.+|...|++++|.+.++.+.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999998754
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-11 Score=122.29 Aligned_cols=224 Identities=11% Similarity=-0.024 Sum_probs=132.0
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCCchHHHHHHHHHHHcCCCCChhHHH
Q 004938 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH----LGVLDQAQRIHLYIDKNAFGGDLRVNN 389 (722)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~i~~~~~~~~~~~~~~~~~ 389 (722)
+..++..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|...+....+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 34455555555666666666666666655521 23334444444444 455555555554444432
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--
Q 004938 390 AIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI----HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH-- 463 (722)
Q Consensus 390 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-- 463 (722)
+...+..+...|.. .+++++|+..|++..+.+ +...+..+...+..
T Consensus 73 -------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 73 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred -------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 34444555555555 555566666665555542 44455555555555
Q ss_pred --cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cC
Q 004938 464 --AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR----ANLLREALELVETMPFAPNVVIWGSLMAACRV----HG 533 (722)
Q Consensus 464 --~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g 533 (722)
.+++++|..+|+...+. + +...+..+...|.. .+++++|.+.+++.-...+...+..+...+.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 56666666666665542 2 33445555556655 66666666666655111245666667777777 77
Q ss_pred CHHHHHHHHHHHHccCCCCCchHHHHHHHhhh----CCCcchHHHHHHHHHhCC
Q 004938 534 EIELAEFAAKQLLQLDPDHDGALVLLSNIYAK----DKRWQDVGELRKSMKERG 583 (722)
Q Consensus 534 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g 583 (722)
++++|...++++++.+| +..+..++.+|.. .+++++|.+.+++..+.|
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 88888888888877765 4567777888877 788888888888777665
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=9.8e-13 Score=128.09 Aligned_cols=197 Identities=13% Similarity=0.146 Sum_probs=156.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004938 384 DLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460 (722)
Q Consensus 384 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 460 (722)
....+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 455667777888889999999999988764 467889999999999999999999999998852 3356788888999
Q ss_pred HHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 004938 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELA 538 (722)
Q Consensus 461 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 538 (722)
+...|++++|.++++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999873 4556788999999999999999999999987 3333 678899999999999999999
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 539 EFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 539 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
...++++++..|+++..+..++.+|...|++++|.+.++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999998754
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.6e-12 Score=122.93 Aligned_cols=194 Identities=14% Similarity=0.029 Sum_probs=106.4
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHH
Q 004938 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIID 393 (722)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 393 (722)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...++.+++.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34456666666666666666666666666542 2244555555566666666666666666666553 334455556666
Q ss_pred HHHhc-----------CCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004938 394 MYAKC-----------GSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459 (722)
Q Consensus 394 ~~~~~-----------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 459 (722)
.|.+. |++++|...|++..+ .+...|..+...|...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 66665 666666666665542 234556666666666666666666666666644 45555666666
Q ss_pred HHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 004938 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513 (722)
Q Consensus 460 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 513 (722)
++...|++++|...|+.+.+ ..|.+...+..+..++.+.|++++|.+.+++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALE--QAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666666666666666655 22334455555666666666666666655543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.7e-12 Score=122.19 Aligned_cols=195 Identities=11% Similarity=0.018 Sum_probs=110.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004938 385 LRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYAC 461 (722)
Q Consensus 385 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 461 (722)
..++..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++.... +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 33444555555555555555555554432 234455555555666666666666666655531 22344555555556
Q ss_pred Hhc-CCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 004938 462 SHA-GLVDEGREIFASMTNEYNIPP-KYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIEL 537 (722)
Q Consensus 462 ~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 537 (722)
... |++++|..+++.+.+ .+..| +...+..+...+...|++++|.+.++++ ...| +...|..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 666 666666666666554 12222 2345555666666666666666666555 2223 35556666666666666666
Q ss_pred HHHHHHHHHccCC-CCCchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 538 AEFAAKQLLQLDP-DHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 538 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
|...++++++..| ++...+..++.++...|+.++|..+++.+.+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666666666666 6666666666666666666666666666554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.46 E-value=6e-12 Score=120.68 Aligned_cols=203 Identities=10% Similarity=-0.046 Sum_probs=134.7
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHc-
Q 004938 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIH- 429 (722)
Q Consensus 354 ~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~- 429 (722)
..+...+...|++++|.+.+..+.+.. +.+...+..+...|...|++++|.+.|++..+ .+..+|..+...|...
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 90 (225)
T 2vq2_A 12 TQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRL 90 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc
Confidence 333334444444444444444444332 22344455555556666666666666655432 3455667777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 004938 430 GDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALE 508 (722)
Q Consensus 430 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 508 (722)
|++++|+..|+++.+.+..|+ ...+..+..++...|++++|...|+.+.+. .+.+...+..++..|.+.|++++|.+
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~ 168 (225)
T 2vq2_A 91 NRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADY 168 (225)
T ss_dssp CCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 778888888877776333344 346677777788888888888888887762 33456777788888888888888888
Q ss_pred HHHhC-CCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHH
Q 004938 509 LVETM-PFA--PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLL 559 (722)
Q Consensus 509 ~~~~~-~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 559 (722)
.++++ ... .+...|..+...+...|+.+.+...++.+.+..|+++.....+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 169 YFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 88876 222 3566777777778899999999999999999999987655443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-11 Score=122.89 Aligned_cols=229 Identities=9% Similarity=-0.045 Sum_probs=155.4
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHhccCCC-CcchHHHHHHHHHh----cCCchHHHHHHHHHHhCCCCCChhhHHHHH
Q 004938 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEK-DLICWSAMISGYAE----NNHPQEALKLFNEMQVCGMKPDKVTMLSVI 357 (722)
Q Consensus 283 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 357 (722)
+..++..+...|...|++++|...|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 5667888999999999999999999988665 56788889999999 999999999999999875 666777777
Q ss_pred HHHHc----cCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHH
Q 004938 358 SACAH----LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDAR 433 (722)
Q Consensus 358 ~~~~~----~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 433 (722)
..+.. .+++++|...++...+.+ +...+..+...|.... ...++++
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~---------------------------~~~~~~~ 131 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK---------------------------VVTRDFK 131 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS---------------------------SSCCCHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC---------------------------CcccCHH
Confidence 77777 778888887777776653 4445555555555400 0044455
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh----cCCHHH
Q 004938 434 NALIFFNKMKDESIDPNGVTFIGVLYACSH----AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR----ANLLRE 505 (722)
Q Consensus 434 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~ 505 (722)
+|+..|++..+.+ +...+..+...+.. .+++++|..+|+...+. .+...+..+..+|.. .+++++
T Consensus 132 ~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~ 204 (273)
T 1ouv_A 132 KAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKE 204 (273)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred HHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 5555555544432 23334444444444 55555555555555542 123445555666666 666666
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCC
Q 004938 506 ALELVETM-PFAPNVVIWGSLMAACRV----HGEIELAEFAAKQLLQLDPDH 552 (722)
Q Consensus 506 A~~~~~~~-~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~ 552 (722)
|++.+++. ... +...+..+...+.. .+++++|...++++++++|++
T Consensus 205 A~~~~~~a~~~~-~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 205 ALARYSKACELE-NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 66666655 222 35566677777777 888889999999998888864
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.45 E-value=8.6e-12 Score=123.77 Aligned_cols=224 Identities=9% Similarity=-0.022 Sum_probs=162.0
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHhcccC---CchHHHHHHHHHHhcCCHHHHHHHHhccCC--CCcc----hHHHHHH
Q 004938 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLK---NLVVSTAMVSGYSRAGQVEDARLIFDQMVE--KDLI----CWSAMIS 323 (722)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~----~~~~li~ 323 (722)
...+......+.+.|++++|...|++..+. +...|..+...|.+.|++++|...|++..+ .+.. +|..+..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 445667788899999999999999998543 456899999999999999999999998755 2322 4889999
Q ss_pred HHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHH-HHHHhcCCHH
Q 004938 324 GYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAII-DMYAKCGSLE 402 (722)
Q Consensus 324 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~ 402 (722)
.+...|++++|+..|++..+.. +.+..++..+...+...|++++|...+..+++.. +.+...+..+. ..|. .++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHHHH
Confidence 9999999999999999998863 3356788899999999999999999999988762 44556666666 4443 44777
Q ss_pred HHHHHHHhcCC---CChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcC-CCCCH------HHHHHHHHHHHhcCCHHH
Q 004938 403 SAREVFERMRR---RNVISWTSMINAFAIHGD---ARNALIFFNKMKDES-IDPNG------VTFIGVLYACSHAGLVDE 469 (722)
Q Consensus 403 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~~------~t~~~ll~a~~~~g~~~~ 469 (722)
+|.+.|++..+ .+...|..+...+...|+ .++|+..|++..+.. -.|+. .+|..+...+...|++++
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 77777776653 335566666666666666 666777666665521 11321 244455555556666666
Q ss_pred HHHHHHHhHh
Q 004938 470 GREIFASMTN 479 (722)
Q Consensus 470 a~~~~~~~~~ 479 (722)
|.+.|+.+.+
T Consensus 240 A~~~~~~al~ 249 (272)
T 3u4t_A 240 ADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666666554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.4e-13 Score=141.44 Aligned_cols=263 Identities=11% Similarity=-0.021 Sum_probs=178.2
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCCCCCCh-----hhHHHHHHHHHccCCchHHHHHHHHHHHc----C-CCCChhH
Q 004938 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDK-----VTMLSVISACAHLGVLDQAQRIHLYIDKN----A-FGGDLRV 387 (722)
Q Consensus 318 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~g~~~~a~~i~~~~~~~----~-~~~~~~~ 387 (722)
+..+...+...|++++|+..|+++.+.+ |+. ..+..+...+...|++++|...+..+++. + .+....+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3344555666666666666666666542 221 24555556666667777776666665542 1 1123445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---------CChHHHHHHHHHHHHcCC-----------------HHHHHHHHHH
Q 004938 388 NNAIIDMYAKCGSLESAREVFERMRR---------RNVISWTSMINAFAIHGD-----------------ARNALIFFNK 441 (722)
Q Consensus 388 ~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~ 441 (722)
+..+...|...|++++|...|++..+ ....+|..+...|...|+ +++|++.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 66677777777777777777766542 123467777777888888 8888888777
Q ss_pred HHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHh
Q 004938 442 MKDE----SIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK----YEHYGCMVDLFGRANLLREALELVET 512 (722)
Q Consensus 442 m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~ 512 (722)
..+. +..|. ..++..+...+...|++++|..+++...+...-.++ ...+..+...|...|++++|.+.+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 6541 11122 236677777888888888888888887653211111 22677888888999999999888877
Q ss_pred C----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------CchHHHHHHHhhhCCCcchHHHHHHH
Q 004938 513 M----PFAPN----VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH------DGALVLLSNIYAKDKRWQDVGELRKS 578 (722)
Q Consensus 513 ~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~ 578 (722)
. +...+ ..+|..+...+...|++++|...+++++++.++. ...+..++.+|...|++++|.+.+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6 11111 4677888888999999999999999998875443 33778899999999999999999998
Q ss_pred HHhC
Q 004938 579 MKER 582 (722)
Q Consensus 579 m~~~ 582 (722)
..+.
T Consensus 369 al~~ 372 (411)
T 4a1s_A 369 HLQL 372 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8663
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-12 Score=135.60 Aligned_cols=263 Identities=11% Similarity=0.015 Sum_probs=171.2
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHccCCchHHHHHHHHHHHc----CCC-CChh
Q 004938 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPD-----KVTMLSVISACAHLGVLDQAQRIHLYIDKN----AFG-GDLR 386 (722)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~----~~~-~~~~ 386 (722)
.+......+...|++++|+..|++..+.+ |+ ...+..+...+...|++++|...+..+.+. +.. ....
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 34455556666666666666666666542 22 134555556666666777776666655432 111 1234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHHcCC--------------------HHHHHH
Q 004938 387 VNNAIIDMYAKCGSLESAREVFERMRR-----RN----VISWTSMINAFAIHGD--------------------ARNALI 437 (722)
Q Consensus 387 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 437 (722)
++..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|+.
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 556666777777777777777766543 12 3366777777777777 778877
Q ss_pred HHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCCHHHHHH
Q 004938 438 FFNKMKDE----SIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK----YEHYGCMVDLFGRANLLREALE 508 (722)
Q Consensus 438 ~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~ 508 (722)
.+++.... +..|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 77765441 11121 235667777788888888888888877653211122 2367777888888888888888
Q ss_pred HHHhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------CchHHHHHHHhhhCCCcchHHH
Q 004938 509 LVETM----PFAPN----VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH------DGALVLLSNIYAKDKRWQDVGE 574 (722)
Q Consensus 509 ~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~ 574 (722)
.+++. +..++ ..++..+...+...|++++|...+++++++.+.. ...+..++.+|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88765 11112 4567777888888888888888888888765443 3467788888888888888888
Q ss_pred HHHHHHh
Q 004938 575 LRKSMKE 581 (722)
Q Consensus 575 ~~~~m~~ 581 (722)
.+++..+
T Consensus 329 ~~~~al~ 335 (406)
T 3sf4_A 329 FAEKHLE 335 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887765
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.3e-11 Score=120.81 Aligned_cols=242 Identities=12% Similarity=-0.004 Sum_probs=154.8
Q ss_pred CCChhHHHHHHHHHHHCCCC---CCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHH
Q 004938 196 NGLFDEVLNLFEEMKMSNVE---PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMA 272 (722)
Q Consensus 196 ~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 272 (722)
.|++++|++.|+++.+.... .+..++..+...+...|+++.|...++.+++.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 46677777777777654221 124455666666667777777777777776653 23566666667777777777777
Q ss_pred HHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhh
Q 004938 273 KGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVT 352 (722)
Q Consensus 273 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 352 (722)
...|++... +...+..+|..+...|...|++++|+..|+++.+. .|+...
T Consensus 97 ~~~~~~al~----------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~ 146 (275)
T 1xnf_A 97 YEAFDSVLE----------------------------LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPF 146 (275)
T ss_dssp HHHHHHHHH----------------------------HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHh----------------------------cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChH
Confidence 666544321 12235667888888888888888888888888774 455555
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------hHHHHHHHHH
Q 004938 353 MLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN-------VISWTSMINA 425 (722)
Q Consensus 353 ~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~ 425 (722)
....+..+...|++++|...+....... +++...+ .++..+...++.++|.+.++...+.+ ...|..+...
T Consensus 147 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~ 224 (275)
T 1xnf_A 147 RSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKY 224 (275)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHH
Confidence 5555555667788888888887777653 3333333 36667777778888888888776532 3567777777
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004938 426 FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIF 474 (722)
Q Consensus 426 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 474 (722)
|...|++++|+..|++.... .|+.. .....++...|++++|++.+
T Consensus 225 ~~~~g~~~~A~~~~~~al~~--~p~~~--~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 225 YLSLGDLDSATALFKLAVAN--NVHNF--VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHTT--CCTTC--HHHHHHHHHHHHHHHC----
T ss_pred HHHcCCHHHHHHHHHHHHhC--CchhH--HHHHHHHHHHHHHHhhHHHH
Confidence 77788888888888877763 45332 12233455666666665554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.8e-12 Score=131.55 Aligned_cols=300 Identities=11% Similarity=-0.012 Sum_probs=176.8
Q ss_pred HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHH
Q 004938 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD----AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSG 293 (722)
Q Consensus 218 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 293 (722)
...+......+...|+++.|...++.+++.+.. + ..++..+...|...|++++|...|++.
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-------------- 73 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD-------------- 73 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH--------------
Confidence 334444555556666666666666666665322 2 245666677777777777777775443
Q ss_pred HHhcCCHHHHHHHHhccCCC--CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCC-CCC----hhhHHHHHHHHHccCC-
Q 004938 294 YSRAGQVEDARLIFDQMVEK--DLICWSAMISGYAENNHPQEALKLFNEMQVCGM-KPD----KVTMLSVISACAHLGV- 365 (722)
Q Consensus 294 ~~~~g~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~- 365 (722)
..+......+ ...+|..+...|...|++++|+..+++..+... .++ ..++..+...+...|+
T Consensus 74 ----------l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 143 (406)
T 3sf4_A 74 ----------LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKS 143 (406)
T ss_dssp ----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ----------HHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCc
Confidence 2222222111 234566677777788888888887777654210 011 2244444555555555
Q ss_pred -------------------chHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHH
Q 004938 366 -------------------LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR--RNVISWTSMIN 424 (722)
Q Consensus 366 -------------------~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~ 424 (722)
+++|...+....+ ++..... ....+|..+..
T Consensus 144 ~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~----------------------------~~~~~~~~~~~~~~~~~la~ 195 (406)
T 3sf4_A 144 FGCPGPQDVGEFPEEVRDALQAAVDFYEENLS----------------------------LVTALGDRAAQGRAFGNLGN 195 (406)
T ss_dssp CC-------CCCCHHHHHHHHHHHHHHHHHHH----------------------------HHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHH----------------------------HHHhccCcHHHHHHHHHHHH
Confidence 4444444433322 1111111 01235566666
Q ss_pred HHHHcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC----cchHHHHHH
Q 004938 425 AFAIHGDARNALIFFNKMKDES-IDPN----GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK----YEHYGCMVD 495 (722)
Q Consensus 425 ~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~ 495 (722)
.|...|++++|+..|++..+.. -.++ ..++..+...+...|++++|..+++...+...-.++ ...+..+..
T Consensus 196 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 275 (406)
T 3sf4_A 196 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGN 275 (406)
T ss_dssp HHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHH
Confidence 6667777777777776655420 0111 125666666777777777777777766542111111 345667777
Q ss_pred HHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC------CCchHHHHHH
Q 004938 496 LFGRANLLREALELVETM----PFAPN----VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD------HDGALVLLSN 561 (722)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~ 561 (722)
.|.+.|++++|.+.+++. +..++ ..++..+...+...|++++|...+++++++.+. ...++..++.
T Consensus 276 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 355 (406)
T 3sf4_A 276 TYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSD 355 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 888888888888887765 11122 457788888899999999999999999886432 3456778888
Q ss_pred HhhhCCCcc
Q 004938 562 IYAKDKRWQ 570 (722)
Q Consensus 562 ~~~~~g~~~ 570 (722)
+|...|+..
T Consensus 356 ~~~~~g~~~ 364 (406)
T 3sf4_A 356 LQMVLGLSY 364 (406)
T ss_dssp HHHHHHTTS
T ss_pred HHHHhhHhH
Confidence 888887664
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.42 E-value=7.2e-12 Score=116.28 Aligned_cols=164 Identities=15% Similarity=0.103 Sum_probs=126.6
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHH
Q 004938 415 NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCM 493 (722)
Q Consensus 415 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 493 (722)
+...|..+...|...|++++|++.|++.++. .|+ ..++..+..++.+.|++++|...+..... ..+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHH
Confidence 4566777777777888888888888877773 454 44677777777888888888888877766 334455666777
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcch
Q 004938 494 VDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQD 571 (722)
Q Consensus 494 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 571 (722)
...+...+++++|.+.+++. ...| +...|..+...+...|++++|+..++++++++|+++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 77778888888888888776 3334 467788888888888889999999999888888888888888888988999999
Q ss_pred HHHHHHHHHhC
Q 004938 572 VGELRKSMKER 582 (722)
Q Consensus 572 a~~~~~~m~~~ 582 (722)
|.+.+++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 98888888764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.8e-13 Score=142.23 Aligned_cols=193 Identities=10% Similarity=-0.008 Sum_probs=155.4
Q ss_pred CChhHHHHHHHHHHhcCCH-HHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004938 383 GDLRVNNAIIDMYAKCGSL-ESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458 (722)
Q Consensus 383 ~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 458 (722)
.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|++.|++..+ +.|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHH
Confidence 3455566666666666666 777666666542 3466788888888888888888888888887 467777777888
Q ss_pred HHHHhc---------CCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhc--------CCHHHHHHHHHhC-CCCC---
Q 004938 459 YACSHA---------GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRA--------NLLREALELVETM-PFAP--- 517 (722)
Q Consensus 459 ~a~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~~-~~~p--- 517 (722)
..+... |++++|.+.|+++.+ ..+.+...|..+..+|... |++++|++.+++. ...|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ--MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 888888 888888888888887 3345577888888888888 8899999999887 4455
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHH
Q 004938 518 -NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSM 579 (722)
Q Consensus 518 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 579 (722)
+...|..+...+...|++++|...++++++++|+++.++..++.++...|++++|.+.+.++
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 67899999999999999999999999999999999999999999999999999998765444
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.42 E-value=3.3e-12 Score=132.61 Aligned_cols=225 Identities=12% Similarity=0.059 Sum_probs=193.4
Q ss_pred hhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC-HHHHHHHHHhcCC---CChHHHHHHHHHH
Q 004938 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS-LESAREVFERMRR---RNVISWTSMINAF 426 (722)
Q Consensus 351 ~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~ 426 (722)
..|..+..++...|++++|...+..+++.. +.+..+|+.+...|.+.|+ +++|...|++..+ .+...|+.+...+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456667778889999999999999999875 5568889999999999997 9999999998874 5778999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh-cCCHH
Q 004938 427 AIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR-ANLLR 504 (722)
Q Consensus 427 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~ 504 (722)
...|++++|+..|+++++. .|+ ...|..+..++...|++++|+..|+.+++ ..+.+...|+.+..+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999984 565 56899999999999999999999999997 345567899999999999 66657
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCC--------
Q 004938 505 EA-----LELVETM-PFAP-NVVIWGSLMAACRVHG--EIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDK-------- 567 (722)
Q Consensus 505 ~A-----~~~~~~~-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 567 (722)
+| ++.+++. .+.| +...|..+...+...| ++++|...++++ +.+|+++.++..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4777766 4556 5679999999998888 689999999998 999999999999999999875
Q ss_pred -CcchHHHHHHHH-Hh
Q 004938 568 -RWQDVGELRKSM-KE 581 (722)
Q Consensus 568 -~~~~a~~~~~~m-~~ 581 (722)
.+++|.++++++ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 358999999998 55
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.1e-12 Score=129.96 Aligned_cols=262 Identities=11% Similarity=0.011 Sum_probs=176.5
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHccCCchHHHHHHHHHHHc----CCC-CChhHH
Q 004938 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPD-----KVTMLSVISACAHLGVLDQAQRIHLYIDKN----AFG-GDLRVN 388 (722)
Q Consensus 319 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~----~~~-~~~~~~ 388 (722)
......+...|++++|+..|+++.+.. |+ ...+..+...+...|++++|...+..+.+. +.. ....++
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 334455666667777777776666542 22 234555566666667777776666655432 111 124456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHHcCC--------------------HHHHHHHH
Q 004938 389 NAIIDMYAKCGSLESAREVFERMRR-----RN----VISWTSMINAFAIHGD--------------------ARNALIFF 439 (722)
Q Consensus 389 ~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~ 439 (722)
..+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|++.+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 6677777777777777777776542 22 2367777777777788 78888887
Q ss_pred HHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHH
Q 004938 440 NKMKDE----SIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK----YEHYGCMVDLFGRANLLREALELV 510 (722)
Q Consensus 440 ~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~ 510 (722)
++.... +..|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|.+.+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 776541 11121 235667777888888888888888887652211111 236778888888899999998888
Q ss_pred HhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------CchHHHHHHHhhhCCCcchHHHHH
Q 004938 511 ETM----PFAPN----VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH------DGALVLLSNIYAKDKRWQDVGELR 576 (722)
Q Consensus 511 ~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~ 576 (722)
++. +..++ ..++..+...+...|++++|...++++++..|.. ...+..++.+|...|++++|.+.+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 776 11122 4577788888999999999999999998875543 236778999999999999999999
Q ss_pred HHHHhC
Q 004938 577 KSMKER 582 (722)
Q Consensus 577 ~~m~~~ 582 (722)
++..+.
T Consensus 327 ~~a~~~ 332 (338)
T 3ro2_A 327 EKHLEI 332 (338)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 988764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-10 Score=117.91 Aligned_cols=218 Identities=11% Similarity=0.080 Sum_probs=158.7
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHH-------ccCCc-------hHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 004938 332 QEALKLFNEMQVCGMKPDKVTMLSVISACA-------HLGVL-------DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397 (722)
Q Consensus 332 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~g~~-------~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 397 (722)
++|+..|++.+... +-+...|..+...+. ..|++ ++|..+++.+++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777887777642 234445555555544 34775 7888888888873224456678888888888
Q ss_pred cCCHHHHHHHHHhcCC--C-ChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHHHH
Q 004938 398 CGSLESAREVFERMRR--R-NVI-SWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS-HAGLVDEGRE 472 (722)
Q Consensus 398 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~ 472 (722)
.|++++|.++|++..+ | +.. .|..++..+.+.|+.++|..+|++..+.. +++...|........ ..|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888765 3 333 78888888888889999999998888742 223344443333322 3688999999
Q ss_pred HHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004938 473 IFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-P---FAP--NVVIWGSLMAACRVHGEIELAEFAAKQLL 546 (722)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 546 (722)
+|+.+.+. .+.+...|..+++.+.+.|++++|..+|++. . +.| ....|..++......|+.+.|..++++++
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99888873 3446678888888888889999999888887 2 354 35688888888888899999999999999
Q ss_pred ccCCCCC
Q 004938 547 QLDPDHD 553 (722)
Q Consensus 547 ~~~p~~~ 553 (722)
+..|++.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 8888765
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.6e-11 Score=113.85 Aligned_cols=167 Identities=13% Similarity=0.062 Sum_probs=140.3
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 004938 383 GDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVL 458 (722)
Q Consensus 383 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll 458 (722)
.+..+|..+...|.+.|++++|.+.|++..+ .+..+|..+...|...|++++|+..+.+.... .|+ ...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 3567788888889999999999999988764 46778888999999999999999999998874 444 45677777
Q ss_pred HHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 004938 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIE 536 (722)
Q Consensus 459 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 536 (722)
..+...++++.+...+....+ ..+.+...+..+...|.+.|++++|++.+++. ...| +..+|..+...+...|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 788899999999999998887 34556778889999999999999999999887 4445 5788999999999999999
Q ss_pred HHHHHHHHHHccCCCCC
Q 004938 537 LAEFAAKQLLQLDPDHD 553 (722)
Q Consensus 537 ~a~~~~~~~~~~~p~~~ 553 (722)
+|+..++++++++|+++
T Consensus 159 ~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhCCccCH
Confidence 99999999999999753
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.35 E-value=6.1e-12 Score=133.25 Aligned_cols=267 Identities=13% Similarity=0.027 Sum_probs=161.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcccC--C-c----hHHHHHHHHHHhcCCHHHHHHHHhccCCC---------Ccch
Q 004938 254 HLQSTLITMYANCGCMDMAKGLFDKVLLK--N-L----VVSTAMVSGYSRAGQVEDARLIFDQMVEK---------DLIC 317 (722)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~-~----~~~~~li~~~~~~g~~~~A~~~f~~~~~~---------~~~~ 317 (722)
..+..+...+...|++++|...|++.... + . ..|..+...|...|++++|...|++..+. ...+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34455666777888888888887766432 1 1 23444555555555555555555443211 1223
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcC-CCCChhHHHHHHHHHH
Q 004938 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA-FGGDLRVNNAIIDMYA 396 (722)
Q Consensus 318 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~-~~~~~~~~~~li~~~~ 396 (722)
|..+...|...|++++|+..|++..... .+.+ .+....++..+...|.
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLA-------------------------------RQLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhhchHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443210 0000 0112334555556666
Q ss_pred hcCC-----------------HHHHHHHHHhcCC-----C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CC
Q 004938 397 KCGS-----------------LESAREVFERMRR-----R----NVISWTSMINAFAIHGDARNALIFFNKMKDESI-DP 449 (722)
Q Consensus 397 ~~g~-----------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p 449 (722)
..|+ +++|.+.+++..+ . ...+|..+...|...|++++|+..|++..+... .+
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 6666 6666666555432 1 224677777788888888888888887765210 11
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHhC-CC---CC
Q 004938 450 N----GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK----YEHYGCMVDLFGRANLLREALELVETM-PF---AP 517 (722)
Q Consensus 450 ~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~---~p 517 (722)
+ ..++..+...+...|++++|...++.+.....-..+ ...+..+...|.+.|++++|.+.+++. .. .+
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 2 126777777888888888888888877653211111 456778888889999999999888876 11 11
Q ss_pred C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004938 518 N----VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551 (722)
Q Consensus 518 ~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 551 (722)
+ ..++..+...+...|++++|...+++++++.+.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 2 357788888999999999999999999987664
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-11 Score=137.92 Aligned_cols=162 Identities=17% Similarity=0.201 Sum_probs=136.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHH
Q 004938 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMV 494 (722)
Q Consensus 416 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 494 (722)
..+|+.|...|.+.|++++|++.|++.++ +.|+ ...+..+..++.+.|++++|++.|+++.+. -+.+...|..+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 45778888888888888888888888887 4665 457888888888888888888888888762 334567888888
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchH
Q 004938 495 DLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDV 572 (722)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 572 (722)
.+|.+.|++++|++.+++. .+.| +...|..+..++...|++++|+..|+++++++|+++.++..++.+|...|+|++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 8888899999999888887 5556 4678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 004938 573 GELRKSMKE 581 (722)
Q Consensus 573 ~~~~~~m~~ 581 (722)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998888754
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-10 Score=119.13 Aligned_cols=274 Identities=11% Similarity=0.013 Sum_probs=154.8
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCH
Q 004938 225 LSACSRAGNLSYGEAVHEFIIDNNVALD----AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300 (722)
Q Consensus 225 l~~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 300 (722)
...+...|+++.|...++.+++.... + ..++..+...|...|++++|...+++..
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-------------------- 70 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL-------------------- 70 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------------
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------------
Confidence 34455566666666666666665322 2 3456666777777777777777754431
Q ss_pred HHHHHHHhccCCC--CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCC-CCC----hhhHHHHHHHHHccCC--------
Q 004938 301 EDARLIFDQMVEK--DLICWSAMISGYAENNHPQEALKLFNEMQVCGM-KPD----KVTMLSVISACAHLGV-------- 365 (722)
Q Consensus 301 ~~A~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~-------- 365 (722)
++......+ ...++..+...|...|++++|+..+++..+... .++ ..++..+...+...|+
T Consensus 71 ----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 146 (338)
T 3ro2_A 71 ----TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQ 146 (338)
T ss_dssp ----HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC
T ss_pred ----HHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhh
Confidence 112221111 234566677777778888888887777654210 011 2244445555555555
Q ss_pred ------------chHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCC
Q 004938 366 ------------LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR--RNVISWTSMINAFAIHGD 431 (722)
Q Consensus 366 ------------~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~ 431 (722)
+++|...+....+ ++..... ....++..+...|...|+
T Consensus 147 ~~~~~~~~a~~~~~~A~~~~~~a~~----------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~ 198 (338)
T 3ro2_A 147 DTGEFPEDVRNALQAAVDLYEENLS----------------------------LVTALGDRAAQGRAFGNLGNTHYLLGN 198 (338)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHH----------------------------HHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHH----------------------------HHHhcCCHHHHHHHHHHHHHHHHHhCC
Confidence 4444444433322 1111111 012345555666666666
Q ss_pred HHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCC
Q 004938 432 ARNALIFFNKMKDESI-DPN----GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK----YEHYGCMVDLFGRANL 502 (722)
Q Consensus 432 ~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~ 502 (722)
+++|+..+++..+... .++ ..++..+...+...|++++|..+++...+...-.++ ...+..+...|...|+
T Consensus 199 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 278 (338)
T 3ro2_A 199 FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD 278 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcC
Confidence 6666666666543100 011 125566666677777777777777766542111111 3456667777778888
Q ss_pred HHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004938 503 LREALELVETM----PFAPN----VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551 (722)
Q Consensus 503 ~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 551 (722)
+++|...+++. +..++ ..++..+...+...|++++|...+++++++.++
T Consensus 279 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 279 YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 88888777765 11112 347778888899999999999999999987764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.30 E-value=3.3e-09 Score=117.54 Aligned_cols=433 Identities=10% Similarity=0.037 Sum_probs=286.3
Q ss_pred HHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCCC---CcccHHHHHHHHHhCCC---hhHHHHHHHH
Q 004938 135 EGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR---DIVPWSVMIDGYFQNGL---FDEVLNLFEE 208 (722)
Q Consensus 135 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~---~~~A~~~~~~ 208 (722)
+....++..+... +-|...|..++..+.+.+.++.|+.+|+++... ...-|...+..-.+.|. ++.+.++|++
T Consensus 50 d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 50 DVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp CHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 3444556666655 568999999999999999999999999988753 33348888888888888 9999999999
Q ss_pred HHHCC-CCCCHhHHHHHHHHHHccCCh--------HHHHHHHHHHHH-cCC-CC-CHhHHHHHHHHHHh---------cC
Q 004938 209 MKMSN-VEPDEMVLSKILSACSRAGNL--------SYGEAVHEFIID-NNV-AL-DAHLQSTLITMYAN---------CG 267 (722)
Q Consensus 209 m~~~g-~~p~~~t~~~ll~~~~~~g~~--------~~a~~~~~~~~~-~g~-~~-~~~~~~~li~~~~~---------~g 267 (722)
..... ..|+...|..-+......++. +...++|+.++. .|. .+ +..+|...+..... .+
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 98753 147887777777665555543 334577877765 465 44 35688888776543 34
Q ss_pred ChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh--CC
Q 004938 268 CMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV--CG 345 (722)
Q Consensus 268 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g 345 (722)
+++.++++|++.+.-....+..+-..|.. |+.-. +..+-..++.- ...+++.|...+.++.. .+
T Consensus 209 ~~~~~R~iy~raL~iP~~~~~~~w~~Y~~----------fe~~~--~~~~a~~~~~e--~~~~y~~Ar~~~~e~~~~~~~ 274 (679)
T 4e6h_A 209 RVQYIRKLYKTLLCQPMDCLESMWQRYTQ----------WEQDV--NQLTARRHIGE--LSAQYMNARSLYQDWLNITKG 274 (679)
T ss_dssp HHHHHHHHHHHHTTSCCSSHHHHHHHHHH----------HHHHH--CTTTHHHHHHH--HHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHH----------HHHhc--CcchHHHHHHH--hhHHHHHHHHHHHHHHHHHHh
Confidence 57788899888865322112222222211 11100 11111111111 11233344444444321 11
Q ss_pred CC---------------C--C---h---hhHHHHHHHHHccC-C------chHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 004938 346 MK---------------P--D---K---VTMLSVISACAHLG-V------LDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395 (722)
Q Consensus 346 ~~---------------p--~---~---~t~~~ll~~~~~~g-~------~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 395 (722)
+. | + . ..|...+.---..+ . .+....+|++++.. ++....+|-..+..+
T Consensus 275 l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~ 353 (679)
T 4e6h_A 275 LKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQ 353 (679)
T ss_dssp CCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHH
T ss_pred HhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHH
Confidence 10 1 0 0 11222222211111 1 22345678888775 455788888888888
Q ss_pred HhcCCHHHHH-HHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------CCCC------------
Q 004938 396 AKCGSLESAR-EVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDES---------IDPN------------ 450 (722)
Q Consensus 396 ~~~g~~~~A~-~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p~------------ 450 (722)
...|+.++|. ++|++... .+...|-..+...-+.|+.++|.++|++++... -.|+
T Consensus 354 ~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~ 433 (679)
T 4e6h_A 354 GEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKL 433 (679)
T ss_dssp HHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccch
Confidence 8999999996 99988764 456678888888999999999999999988631 0142
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcC-CHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 004938 451 GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRAN-LLREALELVETM--PFAPNVVIWGSLMA 527 (722)
Q Consensus 451 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~--~~~p~~~~~~~ll~ 527 (722)
...|...+....+.|..+.|..+|..+.+. ........|...+.+-.+.| +.+.|.++|+.. .+..+...|...+.
T Consensus 434 ~~vWi~y~~~erR~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~ 512 (679)
T 4e6h_A 434 TYVYCVYMNTMKRIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 235777778888889999999999999873 11223445554444445554 589999999887 33346778888888
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCC---CCchHHHHHHHhhhCCCcchHHHHHHHHHhCCC
Q 004938 528 ACRVHGEIELAEFAAKQLLQLDPD---HDGALVLLSNIYAKDKRWQDVGELRKSMKERGI 584 (722)
Q Consensus 528 ~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 584 (722)
-....|+.+.|..+|+++++..|+ ....+...+..-.+.|+.+.+.++.+++.+.-.
T Consensus 513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 888899999999999999998874 345667778878889999999999999987643
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.7e-11 Score=125.97 Aligned_cols=221 Identities=10% Similarity=0.026 Sum_probs=109.4
Q ss_pred HHccCCchHHHHHHHHHHHc--CCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC-----hHHHHHHHH
Q 004938 360 CAHLGVLDQAQRIHLYIDKN--AFGG---DLRVNNAIIDMYAKCGSLESAREVFERMRR-----RN-----VISWTSMIN 424 (722)
Q Consensus 360 ~~~~g~~~~a~~i~~~~~~~--~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~ 424 (722)
+...|++++|...+..+.+. ..+. ...++..+...|...|++++|...+++..+ ++ ..+++.+..
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 192 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT 192 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 34445555555555554432 0011 123444555555555555555555544331 11 234555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhHhhc---CC-CCCcchHHHHHH
Q 004938 425 AFAIHGDARNALIFFNKMKDESI-DPNG----VTFIGVLYACSHAGLVDEGREIFASMTNEY---NI-PPKYEHYGCMVD 495 (722)
Q Consensus 425 ~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~-~~~~~~~~~li~ 495 (722)
.|...|++++|+..|++..+..- .++. .++..+...+...|++++|.+.|+...+-. +. +.....+..+..
T Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 272 (383)
T 3ulq_A 193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQ 272 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 56666666666666655543100 0111 245555556666666666666665555410 11 112344555666
Q ss_pred HHHhcCCHHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHHcCC---HHHHHHHHHHHHccCCCCCchHHHHHHHhhh
Q 004938 496 LFGRANLLREALELVETM-PF-----APN-VVIWGSLMAACRVHGE---IELAEFAAKQLLQLDPDHDGALVLLSNIYAK 565 (722)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~-~~-----~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 565 (722)
.|.+.|++++|.+.+++. .. .|. ...+..+...+...|+ +++|...+++. ...|.....+..++.+|..
T Consensus 273 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 351 (383)
T 3ulq_A 273 IHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHE 351 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHH
Confidence 666666666666666554 10 111 1223444455555565 55555555554 2223333455566666777
Q ss_pred CCCcchHHHHHHHHHh
Q 004938 566 DKRWQDVGELRKSMKE 581 (722)
Q Consensus 566 ~g~~~~a~~~~~~m~~ 581 (722)
.|++++|.+.+++..+
T Consensus 352 ~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 352 RKNFQKASAYFLKVEQ 367 (383)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7777777766666643
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.29 E-value=2e-10 Score=116.38 Aligned_cols=212 Identities=10% Similarity=0.016 Sum_probs=173.2
Q ss_pred hHHHHHHHHHHHcCCCCChhHHHHHHHHHH-------hcCCH-------HHHHHHHHhcCC---C-ChHHHHHHHHHHHH
Q 004938 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYA-------KCGSL-------ESAREVFERMRR---R-NVISWTSMINAFAI 428 (722)
Q Consensus 367 ~~a~~i~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 428 (722)
+.|..+|+++++.. +.+..+|..++..+. +.|++ ++|..+|++..+ | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57778888888763 567778888887776 35886 899999998754 3 55689999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHH-hcCCHHH
Q 004938 429 HGDARNALIFFNKMKDESIDPNGV--TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFG-RANLLRE 505 (722)
Q Consensus 429 ~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~ 505 (722)
.|++++|..+|++.++ +.|+.. .|..+...+.+.|++++|..+|+.+.+ ..+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--DARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT--STTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998 567643 788899999999999999999999987 33445555554444432 3799999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc---CCC-CCchHHHHHHHhhhCCCcchHHHHHHHH
Q 004938 506 ALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQL---DPD-HDGALVLLSNIYAKDKRWQDVGELRKSM 579 (722)
Q Consensus 506 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 579 (722)
|.++|++. ...| +...|..++..+...|++++|..+|+++++. .|+ ....+..++..+.+.|++++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999987 3333 6789999999999999999999999999995 553 5567888899999999999999999999
Q ss_pred HhCC
Q 004938 580 KERG 583 (722)
Q Consensus 580 ~~~g 583 (722)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8754
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.9e-10 Score=119.18 Aligned_cols=230 Identities=8% Similarity=-0.003 Sum_probs=161.9
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCC------CChhHHH
Q 004938 321 MISGYAENNHPQEALKLFNEMQVC----GMKP-DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG------GDLRVNN 389 (722)
Q Consensus 321 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~------~~~~~~~ 389 (722)
....+...|++++|+..|++..+. +-.+ ...++..+...+...|+++.|...+..+.+.... ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344555666666666666666542 1111 1234555666666677777777666666542111 1134567
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHH
Q 004938 390 AIIDMYAKCGSLESAREVFERMRR-----RN----VISWTSMINAFAIHGDARNALIFFNKMKDE----SIDPN-GVTFI 455 (722)
Q Consensus 390 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~ 455 (722)
.+...|...|++++|.+.|++..+ ++ ..+|..+...|...|++++|+..|++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 777888888888888888877653 22 247888889999999999999999988762 23244 45688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhhc---CCCCCcchHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 004938 456 GVLYACSHAGLVDEGREIFASMTNEY---NIPPKYEHYGCMVDLFGRANL---LREALELVETMPFAPNV-VIWGSLMAA 528 (722)
Q Consensus 456 ~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~ll~~ 528 (722)
.+...+...|++++|...++...+.. +.+.....+..+...|...|+ +++|+.++++.+..|+. ..+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 88889999999999999999877532 112223345678888999999 99999999998655543 577788889
Q ss_pred HHHcCCHHHHHHHHHHHHccCC
Q 004938 529 CRVHGEIELAEFAAKQLLQLDP 550 (722)
Q Consensus 529 ~~~~g~~~~a~~~~~~~~~~~p 550 (722)
+...|++++|...+++++++..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999987643
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=6.2e-12 Score=127.34 Aligned_cols=165 Identities=11% Similarity=0.065 Sum_probs=109.8
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHHHhC-------CCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHc------CC
Q 004938 315 LICWSAMISGYAENNHPQEALKLFNEMQVC-------GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKN------AF 381 (722)
Q Consensus 315 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~------~~ 381 (722)
..+|..+...+...|++++|+.+|+++.+. ........+..+...+...|++++|...+..+++. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456888888899999999999999888763 12223456667777788888888888888877653 11
Q ss_pred -CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 004938 382 -GGDLRVNNAIIDMYAKCGSLESAREVFERMRR-----------RNVISWTSMINAFAIHGDARNALIFFNKMKDE---- 445 (722)
Q Consensus 382 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 445 (722)
+....++..+...|...|++++|.+.|++..+ .....|..+...|...|++++|++.|+++...
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 22345566777777777777777777766542 12245666666777777777777777776553
Q ss_pred --CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 004938 446 --SIDPNG-VTFIGVLYACSHAGLVDEGREIFASMTN 479 (722)
Q Consensus 446 --g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 479 (722)
+..|+. .++..+...+...|++++|..+++.+.+
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 112222 3456666666777777777777776664
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-10 Score=106.82 Aligned_cols=159 Identities=15% Similarity=0.044 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004938 387 VNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463 (722)
Q Consensus 387 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 463 (722)
.+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|+..++++.+. .
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~--------------- 72 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--A--------------- 72 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C---------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C---------------
Confidence 344445555555555555555555543 23344555555555555555555555555442 2
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004938 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PF-APNVVIWGSLMAACRVHGEIELAEFA 541 (722)
Q Consensus 464 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~ 541 (722)
+.+...+..++..|...|++++|.+.++++ .. +.+...|..+...+...|++++|...
T Consensus 73 --------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 132 (186)
T 3as5_A 73 --------------------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDS 132 (186)
T ss_dssp --------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence 223334444444455555555555555444 11 22455666666667777777777777
Q ss_pred HHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 542 AKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 542 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
++++++..|+++..+..++.+|...|++++|.+.++...+.
T Consensus 133 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777777777677777777777777777777777766543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-11 Score=125.16 Aligned_cols=246 Identities=14% Similarity=0.092 Sum_probs=160.3
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHhccCC--------C---CcchHHHHHHHHHhcCCchHHHHHHHHHHhC------CC
Q 004938 284 LVVSTAMVSGYSRAGQVEDARLIFDQMVE--------K---DLICWSAMISGYAENNHPQEALKLFNEMQVC------GM 346 (722)
Q Consensus 284 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 346 (722)
..++..+...|...|++++|...|+++.+ . ...++..+...|...|++++|+..|++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 45788888999999999999999988754 2 2456888889999999999999999998764 21
Q ss_pred CC-ChhhHHHHHHHHHccCCchHHHHHHHHHHHc------CC-CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----
Q 004938 347 KP-DKVTMLSVISACAHLGVLDQAQRIHLYIDKN------AF-GGDLRVNNAIIDMYAKCGSLESAREVFERMRRR---- 414 (722)
Q Consensus 347 ~p-~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---- 414 (722)
.| ...++..+...+...|++++|...+..+.+. +. +....++..+...|...|++++|.+.|++..+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 22 3556778888889999999999999988764 22 223556788889999999999999998876431
Q ss_pred -------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCc
Q 004938 415 -------NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487 (722)
Q Consensus 415 -------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 487 (722)
...+|..+...|...|++++|+..|+++.+. .|+. .+..+- ......... .
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~-~~~~~~---~~~~~~~~~----------------~ 244 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR--AHER-EFGSVD---DENKPIWMH----------------A 244 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHH-HHC---------CCHHHH----------------H
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHh-cCCCCC---cchHHHHHH----------------H
Confidence 2357888889999999999999999998773 1110 000000 000000000 0
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004938 488 EHYGCMVDLFGRANLLREALELVETMP-FAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551 (722)
Q Consensus 488 ~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 551 (722)
..+..+...+...+.+.+|...++... ..| +..+|..+...|...|++++|...+++++++.|+
T Consensus 245 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 245 EEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 011112222333444445555555542 233 3456777888888888888888888888877664
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.24 E-value=3.8e-09 Score=110.03 Aligned_cols=262 Identities=13% Similarity=0.008 Sum_probs=171.8
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCCCCCChh----hHHHHHHHHHccCCchHHHHHHHHHHHcCCC-CC----hhHHHHH
Q 004938 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKV----TMLSVISACAHLGVLDQAQRIHLYIDKNAFG-GD----LRVNNAI 391 (722)
Q Consensus 321 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~-~~----~~~~~~l 391 (722)
....+...|++++|...+++.....-..+.. .+..+...+...|++++|...+....+.... .+ ...+..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445566777777777777766543111211 3444455666777787777777766542111 11 1234566
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC-------C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C--CHHHHHH
Q 004938 392 IDMYAKCGSLESAREVFERMRR-------R----NVISWTSMINAFAIHGDARNALIFFNKMKDESID--P--NGVTFIG 456 (722)
Q Consensus 392 i~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ 456 (722)
...+...|++++|...+++..+ + ....+..+...+...|++++|...+++.....-. | ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 7777888888888888776542 1 1235566777788889999999888887763211 1 1245667
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHH-----HHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHH
Q 004938 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG-----CMVDLFGRANLLREALELVETM-PFAPN-----VVIWGSL 525 (722)
Q Consensus 457 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l 525 (722)
+...+...|++++|...++..............+. .++..+...|++++|...+++. ...|. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 77788888999999999888765322111111222 2334477889999999999887 22221 3356677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCC------CchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 526 MAACRVHGEIELAEFAAKQLLQLDPDH------DGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 526 l~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
...+...|++++|...++++++..+.. ...+..++.+|...|+.++|...++...+.
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 788888999999999999888754322 136667888899999999999988887653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.5e-10 Score=108.10 Aligned_cols=205 Identities=12% Similarity=0.046 Sum_probs=147.9
Q ss_pred CChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHH
Q 004938 348 PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMIN 424 (722)
Q Consensus 348 p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 424 (722)
.|...+......+...|++++|...+..+++...+++...+..+...|.+.|++++|.+.|++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 355677777788888899999999999888876436667777788888889999999888887754 34567888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC---cchHHHH
Q 004938 425 AFAIHGDARNALIFFNKMKDESIDPNG--------VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK---YEHYGCM 493 (722)
Q Consensus 425 ~~~~~g~~~~A~~~~~~m~~~g~~p~~--------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l 493 (722)
.|...|++++|+..|++..+. .|+. ..|..+...+...|++++|.+.|+.+.+ ..|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 888889999999999888874 4543 3466667777888888888888888875 2343 5667777
Q ss_pred HHHHHhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhh
Q 004938 494 VDLFGRANLL--REALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564 (722)
Q Consensus 494 i~~~~~~g~~--~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 564 (722)
...|...|+. ++|..+ . ..+...+..+. ....+.+++|...++++++++|+++.....+..+..
T Consensus 160 ~~~~~~~~~~~~~~a~~~----~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPL----A-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHHGGG----T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc----c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 7777665543 222221 1 12333333332 334566899999999999999999877777766543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.1e-09 Score=112.26 Aligned_cols=227 Identities=15% Similarity=0.089 Sum_probs=133.0
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCCC-CCC----hhhHHHHHHHHHccCCchHHHHHHHHHHHcC--CC----CChhHHH
Q 004938 321 MISGYAENNHPQEALKLFNEMQVCGM-KPD----KVTMLSVISACAHLGVLDQAQRIHLYIDKNA--FG----GDLRVNN 389 (722)
Q Consensus 321 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~--~~----~~~~~~~ 389 (722)
....+...|++++|+..|++..+.-. .+| ..++..+..++...|+++.|...+..+.+.. .. ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34455677777777777777654311 122 2345556666677777777777776665421 11 1134556
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCHHHHHH
Q 004938 390 AIIDMYAKCGSLESAREVFERMRR-----RN----VISWTSMINAFAIHGDARNALIFFNKMKDE----SIDPNGVTFIG 456 (722)
Q Consensus 390 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ 456 (722)
.+...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|+..|++.... +.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 666777777777777777665542 11 235666777777777777777777776651 11112345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhhcCCCCC---cchHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCH-HHHHHHHHHH
Q 004938 457 VLYACSHAGLVDEGREIFASMTNEYNIPPK---YEHYGCMVDLFGRANL---LREALELVETMPFAPNV-VIWGSLMAAC 529 (722)
Q Consensus 457 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~ll~~~ 529 (722)
+...+.+.|++++|..+++...+...-.++ ...+..+...|...|+ +++|+..+++.+..|+. ..+..+...|
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 667777777777777777776653222112 2234445555556666 66677766665433332 3445555666
Q ss_pred HHcCCHHHHHHHHHHHHc
Q 004938 530 RVHGEIELAEFAAKQLLQ 547 (722)
Q Consensus 530 ~~~g~~~~a~~~~~~~~~ 547 (722)
...|++++|...++++++
T Consensus 347 ~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 666666666666666654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.21 E-value=7.1e-10 Score=102.29 Aligned_cols=168 Identities=18% Similarity=0.058 Sum_probs=128.5
Q ss_pred hhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHH
Q 004938 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFA 427 (722)
Q Consensus 351 ~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 427 (722)
..+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|.+.++++.+ .+...|..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456677788899999999999999887753 45678889999999999999999999998763 46778888888899
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHH
Q 004938 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507 (722)
Q Consensus 428 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 507 (722)
..|++++|.+.|+++.... +.+...+..+...+...|++++|..+++.+.+. .
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~------------------------ 140 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--R------------------------ 140 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C------------------------
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--C------------------------
Confidence 9999999999998887742 234455666666666777777777776666542 1
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCc
Q 004938 508 ELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554 (722)
Q Consensus 508 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 554 (722)
+.+...|..+...+...|++++|...++++++..|+++.
T Consensus 141 --------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 141 --------PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred --------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 123556677777777888888888888888887777653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.6e-10 Score=108.00 Aligned_cols=187 Identities=10% Similarity=-0.045 Sum_probs=92.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHH
Q 004938 385 LRVNNAIIDMYAKCGSLESAREVFERMRR----RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG-VTFIGVLY 459 (722)
Q Consensus 385 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 459 (722)
+..+......|.+.|++++|...|++..+ ++...|..+...+...|++++|+..|++..+ ..|+. ..+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHHH
Confidence 34455555555556666666655554432 3444444455555555666666666555555 23432 34555555
Q ss_pred HHHhcCCHHHHHHHHHHhHhhcCCCCCc-------chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHH
Q 004938 460 ACSHAGLVDEGREIFASMTNEYNIPPKY-------EHYGCMVDLFGRANLLREALELVETM-PFAPN---VVIWGSLMAA 528 (722)
Q Consensus 460 a~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~ 528 (722)
++...|++++|...|+...+. .+.+. ..|..+...+.+.|++++|++.+++. ...|+ ...|..+...
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 555555555555555555542 12222 23444445555555555555555544 33443 2344444444
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 529 CRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 529 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
+.. .+...++++..+.+.+...+.. ......+.+++|...+++..+.
T Consensus 163 ~~~-----~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 163 FYN-----NGADVLRKATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHH-----HHHHHHHHHGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhc
Confidence 422 2333344444444443322221 1223334457788777777664
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.16 E-value=6e-10 Score=120.01 Aligned_cols=208 Identities=12% Similarity=-0.008 Sum_probs=138.9
Q ss_pred chHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCc-hHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 004938 331 PQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL-DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409 (722)
Q Consensus 331 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 409 (722)
+++++..+++..... +.+...+..+..++...|++ ++|...++.+++.. +.+...+..+...|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555555544331 23455566666666677777 77777777766653 3346667777777777777777777777
Q ss_pred hcCC--CChHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc--------CCHHH
Q 004938 410 RMRR--RNVISWTSMINAFAIH---------GDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHA--------GLVDE 469 (722)
Q Consensus 410 ~~~~--~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~--------g~~~~ 469 (722)
+..+ |+...|..+...|... |++++|+..|++..+. .|+ ...+..+..++... |++++
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 6653 5556677777777777 7777888887777773 444 45667777777777 77888
Q ss_pred HHHHHHHhHhhcCCC---CCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004938 470 GREIFASMTNEYNIP---PKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQ 544 (722)
Q Consensus 470 a~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 544 (722)
|...|+.+.+. .+ .+...|..+..+|.+.|++++|++.+++. ...| +...|..+...+...|++++|...+++
T Consensus 240 A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 240 ALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88888777762 22 35667777778888888888888887776 3344 355677777777777777777665443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.13 E-value=4.3e-08 Score=101.99 Aligned_cols=266 Identities=11% Similarity=-0.012 Sum_probs=155.9
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHh----HHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CC----HhHHHHHH
Q 004938 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEM----VLSKILSACSRAGNLSYGEAVHEFIIDNNVA-LD----AHLQSTLI 260 (722)
Q Consensus 190 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~~----~~~~~~li 260 (722)
...+...|++++|...+++.....-..+.. ++..+...+...|+++.|...+...++.... .+ ..++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344556777777777777766543222221 3444445566677777777777766543111 11 12345566
Q ss_pred HHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCC----CcchHHHHHHHHHhcCCchHHHH
Q 004938 261 TMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK----DLICWSAMISGYAENNHPQEALK 336 (722)
Q Consensus 261 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~ 336 (722)
..|...|++++|...+++. .++..+...+ ....+..+...+...|++++|..
T Consensus 101 ~~~~~~G~~~~A~~~~~~a------------------------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 156 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKA------------------------FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 156 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHH------------------------HHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHH------------------------HHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 6777777777777775433 2333332222 12345667777888888888888
Q ss_pred HHHHHHhCCCC--C--ChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCCh-hHHH-----HHHHHHHhcCCHHHHHH
Q 004938 337 LFNEMQVCGMK--P--DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDL-RVNN-----AIIDMYAKCGSLESARE 406 (722)
Q Consensus 337 ~~~~m~~~g~~--p--~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~-~~~~-----~li~~~~~~g~~~~A~~ 406 (722)
.+++....... + ...++..+...+...|++++|...++...+....++. ..+. ..+..+...|++++|..
T Consensus 157 ~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 236 (373)
T 1hz4_A 157 SARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAAN 236 (373)
T ss_dssp HHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 88887653211 1 1234566666777888888888888877654211111 1111 23344667888888888
Q ss_pred HHHhcCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCHH-HHHHHHHHHHhcCCHHHHHHHH
Q 004938 407 VFERMRRRN-------VISWTSMINAFAIHGDARNALIFFNKMKDE----SIDPNGV-TFIGVLYACSHAGLVDEGREIF 474 (722)
Q Consensus 407 ~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~ 474 (722)
.+++...++ ...+..+...+...|++++|...+++.... |..++.. .+..+..++...|+.++|...+
T Consensus 237 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 316 (373)
T 1hz4_A 237 WLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVL 316 (373)
T ss_dssp HHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 888776522 124556667777788888888888776542 1111221 3444455666667777777666
Q ss_pred HHhHh
Q 004938 475 ASMTN 479 (722)
Q Consensus 475 ~~~~~ 479 (722)
+....
T Consensus 317 ~~al~ 321 (373)
T 1hz4_A 317 LDALK 321 (373)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.5e-09 Score=113.42 Aligned_cols=308 Identities=9% Similarity=-0.013 Sum_probs=206.2
Q ss_pred CCCCHhHHHHHHHHH--HhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCC-CcchHHHHHHH-
Q 004938 249 VALDAHLQSTLITMY--ANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK-DLICWSAMISG- 324 (722)
Q Consensus 249 ~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~- 324 (722)
..|+..+-+.|-+.| .+.+++++|..+++++. +.++.|.+. ++..|-.++..
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~------------------------~~~~~~~~~~~~~~yy~l~~~r 61 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVE------------------------QDIQQMEEDQDLLIYYSLMCFR 61 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHGGGBCCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH------------------------HHHHHhcccHHHHHHHHHHHHH
Confidence 356667777777777 77888888888865542 223333221 22333333321
Q ss_pred -HHhcCCchHHH---------HHHHHHHhCCCCCCh-h---hHHHHHHHHHccCCchHHHHHHHHHHHcCC-CC----Ch
Q 004938 325 -YAENNHPQEAL---------KLFNEMQVCGMKPDK-V---TMLSVISACAHLGVLDQAQRIHLYIDKNAF-GG----DL 385 (722)
Q Consensus 325 -~~~~g~~~~A~---------~~~~~m~~~g~~p~~-~---t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~-~~----~~ 385 (722)
..-.+....+. +.++.+.....+.+. . .+......+...|++++|...+..+.+... .+ ..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a 141 (378)
T 3q15_A 62 HQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKA 141 (378)
T ss_dssp HHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHH
T ss_pred HHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHH
Confidence 11112222222 555554332111111 1 122233456789999999999999876421 12 24
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-
Q 004938 386 RVNNAIIDMYAKCGSLESAREVFERMRR-----RN-----VISWTSMINAFAIHGDARNALIFFNKMKDE----SIDPN- 450 (722)
Q Consensus 386 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~- 450 (722)
.++..+...|...|+++.|...+++..+ ++ ..+++.+...|...|++++|++.|++..+. +..+.
T Consensus 142 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 221 (378)
T 3q15_A 142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFI 221 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 5778899999999999999998887642 22 357888999999999999999999987762 11111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhc---CCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC----CC--CCC-HH
Q 004938 451 GVTFIGVLYACSHAGLVDEGREIFASMTNEY---NIPPKYEHYGCMVDLFGRANLLREALELVETM----PF--APN-VV 520 (722)
Q Consensus 451 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~--~p~-~~ 520 (722)
..++..+...+...|++++|.+.|+...+-. +.+.....+..+...|.+.|++++|.+.+++. +. .|. ..
T Consensus 222 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 301 (378)
T 3q15_A 222 AISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE 301 (378)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 2467788889999999999999999887611 22333567888999999999999999999886 21 233 33
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 521 IWGSLMAACRVHGE---IELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 521 ~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
.+..+...+...++ +++|...+++. ...|.....+..++.+|...|++++|.+.+++..+
T Consensus 302 ~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 302 LFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45556666777788 77787777762 23344445777899999999999999999998764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=9.4e-10 Score=110.34 Aligned_cols=186 Identities=10% Similarity=0.005 Sum_probs=117.4
Q ss_pred HHHhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHH
Q 004938 394 MYAKCGSLESAREVFERMRR-----RN----VISWTSMINAFAIHGDARNALIFFNKMKDESI---DPN--GVTFIGVLY 459 (722)
Q Consensus 394 ~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~ 459 (722)
.|...|++++|.+.|++..+ .+ ..+|+.+...|...|++++|+..|++...... .+. ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35555666666655554432 11 34666777777777777777777776654210 111 235677777
Q ss_pred HHHhc-CCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---H-----HHHHHH
Q 004938 460 ACSHA-GLVDEGREIFASMTNEYNIPPK----YEHYGCMVDLFGRANLLREALELVETM-PFAPN---V-----VIWGSL 525 (722)
Q Consensus 460 a~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~-----~~~~~l 525 (722)
.+... |++++|+..|++..+.+.-..+ ...+..+...|.+.|++++|++.+++. ...|+ . ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 78875 8888888888887753211111 245777888888899999999888876 22222 1 256777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCCch-----HHHHHHHhh--hCCCcchHHHHHHHH
Q 004938 526 MAACRVHGEIELAEFAAKQLLQLDPDHDGA-----LVLLSNIYA--KDKRWQDVGELRKSM 579 (722)
Q Consensus 526 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~a~~~~~~m 579 (722)
...+...|++++|...++++++++|+.... +..++..|. ..+++++|.+.++.+
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 778888999999999999999999986543 334555554 456777777776544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=6.1e-10 Score=124.93 Aligned_cols=164 Identities=12% Similarity=0.176 Sum_probs=133.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 004938 384 DLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLY 459 (722)
Q Consensus 384 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 459 (722)
+...++.|...|.+.|++++|.+.|++..+ .+..+|+.+...|.+.|++++|++.|++.++ +.|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 456777888888888888888888887653 4567888888888888999999999988887 4666 457888888
Q ss_pred HHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHH
Q 004938 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAACRVHGEIEL 537 (722)
Q Consensus 460 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~ 537 (722)
++...|++++|++.|+++.+ --+.+...|..+..+|.+.|++++|++.+++. .+.|+ ...|..|...+...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 88899999999999988886 23445678888999999999999999999887 55564 6788889999999999999
Q ss_pred HHHHHHHHHccCCC
Q 004938 538 AEFAAKQLLQLDPD 551 (722)
Q Consensus 538 a~~~~~~~~~~~p~ 551 (722)
|.+.+++++++.|+
T Consensus 164 A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 164 YDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChh
Confidence 99999998876543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=2.8e-09 Score=106.90 Aligned_cols=167 Identities=11% Similarity=-0.026 Sum_probs=108.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCC------
Q 004938 387 VNNAIIDMYAKCGSLESAREVFERMRR-----RN----VISWTSMINAFAIH-GDARNALIFFNKMKDESIDPN------ 450 (722)
Q Consensus 387 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~------ 450 (722)
+++.+..+|.+.|++++|...|++..+ .+ ..+|+.+...|... |++++|+..|++..+. .|+
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~ 156 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHH
Confidence 444555555555555555555554432 11 24677777888885 8888888888887662 221
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcc-----hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----
Q 004938 451 -GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE-----HYGCMVDLFGRANLLREALELVETM-PFAPNV---- 519 (722)
Q Consensus 451 -~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~---- 519 (722)
..++..+...+...|++++|...|+.+.+...-.+... .|..+..++...|++++|...+++. .+.|+.
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 24577788888888999999999888886321112211 4567778888889999999999887 445542
Q ss_pred --HHHHHHHHHHH--HcCCHHHHHHHHHHHHccCCCCCch
Q 004938 520 --VIWGSLMAACR--VHGEIELAEFAAKQLLQLDPDHDGA 555 (722)
Q Consensus 520 --~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~ 555 (722)
..+..++.++. ..+++++|...|+++..++|.....
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~ 276 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITI 276 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHH
Confidence 13444555554 3567888888888888888865433
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.02 E-value=2.2e-09 Score=106.48 Aligned_cols=221 Identities=10% Similarity=0.099 Sum_probs=154.3
Q ss_pred HccCCchHHHHHHHHHHHc-------CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----------CChHHHHHH
Q 004938 361 AHLGVLDQAQRIHLYIDKN-------AFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR-----------RNVISWTSM 422 (722)
Q Consensus 361 ~~~g~~~~a~~i~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l 422 (722)
...|++++|...+++.++. ..+....++..+...|...|++++|...|++..+ ....+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4568888888888877652 2233466788899999999999999999987652 124578888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhc-----C-CCCCcch
Q 004938 423 INAFAIHGDARNALIFFNKMKDE------SIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEY-----N-IPPKYEH 489 (722)
Q Consensus 423 i~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~~ 489 (722)
...|...|++++|+..|++.... .-.|+ ..++..+...+...|++++|..+++.+.+.. . .+.....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998763 11233 3567888889999999999999999887631 1 1223467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-C---------CCCC-HHHHHHHHHHHHHcC------CHHHHHHHHHHHHccCCCC
Q 004938 490 YGCMVDLFGRANLLREALELVETM-P---------FAPN-VVIWGSLMAACRVHG------EIELAEFAAKQLLQLDPDH 552 (722)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~~-~---------~~p~-~~~~~~ll~~~~~~g------~~~~a~~~~~~~~~~~p~~ 552 (722)
+..+...|.+.|++++|.+.+++. . ..+. ...|..+.......+ .+..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 788889999999999999998876 1 1222 234444433333322 2333344444333344556
Q ss_pred CchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 553 DGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 553 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
...+..++.+|...|++++|.+++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66888999999999999999999998765
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.99 E-value=7.8e-09 Score=101.69 Aligned_cols=183 Identities=14% Similarity=0.018 Sum_probs=115.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHH
Q 004938 385 LRVNNAIIDMYAKCGSLESAREVFERMRR--R-N---VISWTSMINAFAIHGDARNALIFFNKMKDESIDPN----GVTF 454 (722)
Q Consensus 385 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~ 454 (722)
...+..+...+.+.|++++|...|+++.+ | + ...|..+...|.+.|++++|+..|++.++. .|+ ...+
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~ 92 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQAE 92 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHHH
Confidence 34444455556666666666666666543 2 2 345556666666666666666666666653 221 2244
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHhHhhcCCCCCcchH-----------------HHHHHHHHhcCCHHHHHHH
Q 004938 455 IGVLYACSH--------AGLVDEGREIFASMTNEYNIPPKYEHY-----------------GCMVDLFGRANLLREALEL 509 (722)
Q Consensus 455 ~~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~-----------------~~li~~~~~~g~~~~A~~~ 509 (722)
..+..++.. .|++++|...|+.+.+.+ |.+.... ..+...|.+.|++++|+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 455555555 666677777766666532 2222233 5567888999999999999
Q ss_pred HHhC-CCCCC----HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHccCCCCCch---HHHHHHHhhhCCCcch
Q 004938 510 VETM-PFAPN----VVIWGSLMAACRVH----------GEIELAEFAAKQLLQLDPDHDGA---LVLLSNIYAKDKRWQD 571 (722)
Q Consensus 510 ~~~~-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~ 571 (722)
++++ ...|+ ...+..+..++... |++++|...++++++..|+++.. ...+..++...|++++
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 9887 22333 35677777777765 88999999999999999998643 3345555544444433
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.5e-08 Score=98.01 Aligned_cols=191 Identities=14% Similarity=0.042 Sum_probs=149.9
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC-c
Q 004938 413 RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN----GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK-Y 487 (722)
Q Consensus 413 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~ 487 (722)
..+...+-.+...+.+.|++++|+..|+++++. .|+ ...+..+..++...|++++|...|+.+.+.+.-.|. .
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 356677788888899999999999999999884 454 457888889999999999999999999985332222 4
Q ss_pred chHHHHHHHHHh--------cCCHHHHHHHHHhC-CCCCC-HHHH-----------------HHHHHHHHHcCCHHHHHH
Q 004938 488 EHYGCMVDLFGR--------ANLLREALELVETM-PFAPN-VVIW-----------------GSLMAACRVHGEIELAEF 540 (722)
Q Consensus 488 ~~~~~li~~~~~--------~g~~~~A~~~~~~~-~~~p~-~~~~-----------------~~ll~~~~~~g~~~~a~~ 540 (722)
..+..+..++.+ .|++++|+..|++. ...|+ ...+ ..+...+...|++++|+.
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 567788888988 99999999999987 23333 2222 456778899999999999
Q ss_pred HHHHHHccCCCCC---chHHHHHHHhhhC----------CCcchHHHHHHHHHhCCCccCCcccEEEeCCEEEEEEeCCC
Q 004938 541 AAKQLLQLDPDHD---GALVLLSNIYAKD----------KRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADR 607 (722)
Q Consensus 541 ~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~ 607 (722)
.++++++..|+++ ..+..++.+|... |++++|...++++.+...
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p----------------------- 226 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP----------------------- 226 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT-----------------------
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC-----------------------
Confidence 9999999999854 4788999999877 999999999999887432
Q ss_pred CCcchHHHHHHHHHHHHHHhh
Q 004938 608 SHKQTDQIYEKLNEVISELKP 628 (722)
Q Consensus 608 ~~~~~~~i~~~l~~l~~~~~~ 628 (722)
.+|...+....+.++...+.+
T Consensus 227 ~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp TCTHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHH
Confidence 244455666666666666553
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.4e-08 Score=100.63 Aligned_cols=199 Identities=12% Similarity=0.052 Sum_probs=116.3
Q ss_pred hhHHHHHHHHHccCCchHHHHHHHHHHHc------CC-CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C--
Q 004938 351 VTMLSVISACAHLGVLDQAQRIHLYIDKN------AF-GGDLRVNNAIIDMYAKCGSLESAREVFERMRR-------R-- 414 (722)
Q Consensus 351 ~t~~~ll~~~~~~g~~~~a~~i~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~-- 414 (722)
.++..+...+...|++++|...+..+++. +. +....++..+...|...|++++|.+.|++..+ +
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34444445555555555555555554432 11 11234555666666666666666666665432 1
Q ss_pred --ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhc----
Q 004938 415 --NVISWTSMINAFAIHGDARNALIFFNKMKDE------SIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEY---- 481 (722)
Q Consensus 415 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---- 481 (722)
...+|..+...|...|++++|+..|++..+. +-.|+ ..++..+...+...|++++|..+++.+.+..
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 2346777777788888888888888877663 11332 3467777888888888888888888877521
Q ss_pred --CCCC-CcchHHHHHHHHHh------cCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004938 482 --NIPP-KYEHYGCMVDLFGR------ANLLREALELVETMP-FAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549 (722)
Q Consensus 482 --~~~~-~~~~~~~li~~~~~------~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 549 (722)
...+ ....+..+...+.. ...+.++...++... ..|+ ..+|..+...+...|++++|...++++++..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 1122 23344444444333 233555666666653 2333 4578889999999999999999999998753
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=7.8e-10 Score=98.51 Aligned_cols=139 Identities=8% Similarity=-0.049 Sum_probs=94.8
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHH
Q 004938 426 FAIHGDARNALIFFNKMKDESIDPNG-VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR 504 (722)
Q Consensus 426 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 504 (722)
+...|+.++|+..+++... ..|+. ..+..+...|.+.|++++|++.|+...+ -.|.+...|..+..+|.+.|+++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCchH
Confidence 3445566666666665543 23332 2445566666666777777777766665 23344566777777777777777
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHH-HHHHHHccCCCCCchHHHHHHHhhhCCC
Q 004938 505 EALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEF-AAKQLLQLDPDHDGALVLLSNIYAKDKR 568 (722)
Q Consensus 505 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 568 (722)
+|+..|++. .+.| +..+|..+...+...|+.++|.. .++++++++|+++.+|.....++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 777777766 4455 46788888888888888876655 4689999999999888888888877775
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.6e-08 Score=87.29 Aligned_cols=129 Identities=22% Similarity=0.285 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHH
Q 004938 418 SWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLF 497 (722)
Q Consensus 418 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 497 (722)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++.+.+. .+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~------------ 67 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPR------------ 67 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCC------------
Confidence 45556666666666666666666666532 223444555555555666666666666655542 122
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHH
Q 004938 498 GRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRK 577 (722)
Q Consensus 498 ~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 577 (722)
+...|..+...+...|++++|...++++++..|++...+..++.+|...|++++|.+.++
T Consensus 68 --------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 68 --------------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp --------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred --------------------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 334455555555555666666666666666666555555566666666666666666665
Q ss_pred HHHh
Q 004938 578 SMKE 581 (722)
Q Consensus 578 ~m~~ 581 (722)
.+.+
T Consensus 128 ~~~~ 131 (136)
T 2fo7_A 128 KALE 131 (136)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 5544
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.91 E-value=4.5e-09 Score=118.45 Aligned_cols=168 Identities=11% Similarity=-0.026 Sum_probs=124.7
Q ss_pred HhcCCHHHHHHHHHhcC-----------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 004938 396 AKCGSLESAREVFERMR-----------RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSH 463 (722)
Q Consensus 396 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~ 463 (722)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|+..|++..+. .|+ ...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 56777788877777765 235567777777888888888888888887773 454 4567777777888
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 004938 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFA 541 (722)
Q Consensus 464 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 541 (722)
.|++++|.+.|+++.+ ..+.+...|..+..+|.+.|++++ ++.+++. ...| +...|..+..++...|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888888776 234456777888888888888888 8777776 3444 456788888888888888888888
Q ss_pred HHHHHccCCCCCchHHHHHHHhhhCCC
Q 004938 542 AKQLLQLDPDHDGALVLLSNIYAKDKR 568 (722)
Q Consensus 542 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 568 (722)
++++++++|++..++..++.+|...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 888888888888888888888876555
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.91 E-value=3.3e-08 Score=85.35 Aligned_cols=92 Identities=20% Similarity=0.295 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004938 387 VNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463 (722)
Q Consensus 387 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 463 (722)
.+..+...|...|++++|..+|+++.+ .+...|..+...+...|++++|...|+++...+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 567888999999999999999998753 567889999999999999999999999998853 3345677777888888
Q ss_pred cCCHHHHHHHHHHhHh
Q 004938 464 AGLVDEGREIFASMTN 479 (722)
Q Consensus 464 ~g~~~~a~~~~~~~~~ 479 (722)
.|++++|.++++.+.+
T Consensus 82 ~~~~~~A~~~~~~~~~ 97 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALE 97 (136)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH
Confidence 8888888888888776
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.91 E-value=3.9e-08 Score=94.20 Aligned_cols=182 Identities=14% Similarity=0.053 Sum_probs=121.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH----HH
Q 004938 385 LRVNNAIIDMYAKCGSLESAREVFERMRR--RN----VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV----TF 454 (722)
Q Consensus 385 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~ 454 (722)
...+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|+++.+. .|+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 34455566778888888888888888763 32 246777788888888888888888888874 44432 34
Q ss_pred HHHHHHHHh------------------cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 004938 455 IGVLYACSH------------------AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFA 516 (722)
Q Consensus 455 ~~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 516 (722)
..+..++.. .|+.++|...|+.+.+. .|.+...+..+..+ +.+.+..
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----~~~~~~~--------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----VFLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----HHHHHHH---------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----HHHHHHH---------
Confidence 444444443 35666666666666652 22222222211110 0000000
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCC---chHHHHHHHhhhCCCcchHHHHHHHHHhCCCc
Q 004938 517 PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD---GALVLLSNIYAKDKRWQDVGELRKSMKERGIL 585 (722)
Q Consensus 517 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 585 (722)
......+...+...|++++|...++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 01113456678899999999999999999999976 56889999999999999999999999886543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.90 E-value=1.1e-06 Score=94.51 Aligned_cols=370 Identities=10% Similarity=-0.011 Sum_probs=179.7
Q ss_pred cC-ChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCC--CCcccHHHHHHHHHhCCC-hhHHHHH
Q 004938 130 AE-GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY--RDIVPWSVMIDGYFQNGL-FDEVLNL 205 (722)
Q Consensus 130 ~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~-~~~A~~~ 205 (722)
.| ++..|+.+++.++..- |. |+.+.+..+|++... |++..|...+....+.+. .+....+
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHH
T ss_pred cCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHH
Confidence 34 3677777777766542 11 788889988887654 566677777776666553 3455667
Q ss_pred HHHHHHC-CCCC-CHhHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhc
Q 004938 206 FEEMKMS-NVEP-DEMVLSKILSACSR----AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV 279 (722)
Q Consensus 206 ~~~m~~~-g~~p-~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 279 (722)
|+..... |..| +...|...+..+.. .++.+.+..+++.+++.....-..+|......-.. .....+.++..+.
T Consensus 71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~-~~~~~~~~~~~~~ 149 (493)
T 2uy1_A 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELE-LNKITGKKIVGDT 149 (493)
T ss_dssp HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-HCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHH-hccccHHHHHHHH
Confidence 7766542 4333 44556555554432 35677788888888774221112222222221111 1122222222111
Q ss_pred ccCCchHHHHHHHHHHhcCCHHHHHHHHhccC----CCCcchHHHHHHHHHhcCC-------chHHHHHHHHHHhCCCCC
Q 004938 280 LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV----EKDLICWSAMISGYAENNH-------PQEALKLFNEMQVCGMKP 348 (722)
Q Consensus 280 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p 348 (722)
. +.+..|..+++.+. ..+...|...+.--..++. .+.+..+|++++... +-
T Consensus 150 ~-----------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~ 211 (493)
T 2uy1_A 150 L-----------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YY 211 (493)
T ss_dssp H-----------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TT
T ss_pred h-----------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CC
Confidence 0 11222222222211 1123355555544322211 234567788777642 33
Q ss_pred ChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH-HHHHHhcC------------CCC
Q 004938 349 DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESA-REVFERMR------------RRN 415 (722)
Q Consensus 349 ~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~------------~~~ 415 (722)
+...|...+.-+.+.|+++.|..+++.+++. +.+...+.. |+...+.++. ..+.+... ...
T Consensus 212 ~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 285 (493)
T 2uy1_A 212 AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKEL 285 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhccccc
Confidence 4556666666677788888888888888877 444333332 2221111111 11111110 001
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHhHhhcCCCCCcchHHHHH
Q 004938 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH-AGLVDEGREIFASMTNEYNIPPKYEHYGCMV 494 (722)
Q Consensus 416 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 494 (722)
...|-..+..+.+.++.+.|..+|++. .. ...+...|......-.. .++.+.|..+|+...+.+ +.+...+...+
T Consensus 286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yi 361 (493)
T 2uy1_A 286 DLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFF 361 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHH
Confidence 234555555555556666666666666 21 11122233221111111 224666666666666533 22233444555
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004938 495 DLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL 546 (722)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 546 (722)
+...+.|+.+.|..+|+++. .....|...+.--..+|+.+.+..++++.+
T Consensus 362 d~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 362 LFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55556666666666666652 234555555555555555555555555544
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.90 E-value=1.3e-07 Score=93.11 Aligned_cols=174 Identities=15% Similarity=0.019 Sum_probs=92.3
Q ss_pred HHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 004938 404 AREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTN 479 (722)
Q Consensus 404 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 479 (722)
|...|++..+ ++..++..+...+...|++++|++++.+.+..|-.++ ...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4444554432 3333444555555566666666666665544332122 23455555566666666666666666644
Q ss_pred hcCCCC-----CcchHHHHHHH--HHhcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-
Q 004938 480 EYNIPP-----KYEHYGCMVDL--FGRAN--LLREALELVETM-PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL- 548 (722)
Q Consensus 480 ~~~~~~-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 548 (722)
..| +..+...|..+ ....| ++++|..+|+++ ...|+..+-..|++++...|++++|+..++.+.+.
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 233 12333333333 22223 666666666666 33344222233334566677777777777766654
Q ss_pred ---------CCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 549 ---------DPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 549 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
+|+++.++.+++.+....|+ +|.+++.++++.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 36666666666666666665 666777766664
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.87 E-value=1.5e-07 Score=92.52 Aligned_cols=237 Identities=10% Similarity=0.005 Sum_probs=153.3
Q ss_pred hcCCHHHHHHHHhccCCCCcc-hHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHH
Q 004938 296 RAGQVEDARLIFDQMVEKDLI-CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374 (722)
Q Consensus 296 ~~g~~~~A~~~f~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~ 374 (722)
-.|++..++.-...+...+.. .---+..+|...|++.... .-.|....+..+. .|...+ +...++
T Consensus 25 y~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la-~~~~~~----a~~~l~ 90 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYV-QFLDTK----NIEELE 90 (310)
T ss_dssp TTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHH-HHHTTT----CCHHHH
T ss_pred HhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHH-HHhccc----HHHHHH
Confidence 345555555544544333222 2223446777777766421 1123322333222 223322 556666
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 004938 375 YIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR-----RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDP 449 (722)
Q Consensus 375 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 449 (722)
..++.+ .++......+...|...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.+ ..|
T Consensus 91 ~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~~ 167 (310)
T 3mv2_B 91 NLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AIE 167 (310)
T ss_dssp HTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSC
T ss_pred HHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCc
Confidence 665554 34455556788888889999999999988743 2456777788889999999999999999987 467
Q ss_pred -----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC----
Q 004938 450 -----NGVTFIGVLYAC--SHAG--LVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PF---- 515 (722)
Q Consensus 450 -----~~~t~~~ll~a~--~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~---- 515 (722)
+..+...+..++ ...| ++.+|..+|+++..+ .|+......+..++.+.|++++|.+.++.+ ..
T Consensus 168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~ 244 (310)
T 3mv2_B 168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 355666666553 3334 899999999998763 244223344455888999999999998765 21
Q ss_pred ------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCc
Q 004938 516 ------AP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554 (722)
Q Consensus 516 ------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 554 (722)
.| |+.+...++......|+ .|.++++++.+..|+++.
T Consensus 245 ~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 245 EQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp TTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 24 45666566666666776 889999999999999874
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=5.6e-08 Score=96.97 Aligned_cols=173 Identities=9% Similarity=-0.009 Sum_probs=132.2
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhc
Q 004938 403 SAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEY 481 (722)
Q Consensus 403 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 481 (722)
...+.+......+...+..+...+.+.|++++|+..|++..+. .|+ ...+..+...+...|++++|...++.+...
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~- 180 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ- 180 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-
Confidence 3444444444445566777777788888888998888888874 565 456777888888889999999988887652
Q ss_pred CCCCCcchHH-HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC--CchH
Q 004938 482 NIPPKYEHYG-CMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH--DGAL 556 (722)
Q Consensus 482 ~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~ 556 (722)
.|+..... .....+.+.|+.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|++ ...+
T Consensus 181 --~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 181 --DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp --GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred --hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 34433222 2223356677778888888776 3345 57889999999999999999999999999999998 7789
Q ss_pred HHHHHHhhhCCCcchHHHHHHHHH
Q 004938 557 VLLSNIYAKDKRWQDVGELRKSMK 580 (722)
Q Consensus 557 ~~l~~~~~~~g~~~~a~~~~~~m~ 580 (722)
..++.+|...|+.++|...+++..
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHH
Confidence 999999999999999998887654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=4.8e-09 Score=93.31 Aligned_cols=122 Identities=10% Similarity=-0.004 Sum_probs=102.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH
Q 004938 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEI 535 (722)
Q Consensus 458 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 535 (722)
...+...|++++|++.++.... ..+.+...+..+..+|.+.|++++|++.|++. .+.| +..+|..+...+...|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 3445667899999999988764 22223556778999999999999999999988 5556 578999999999999999
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHH-HHHHHh
Q 004938 536 ELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGEL-RKSMKE 581 (722)
Q Consensus 536 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 581 (722)
++|+..|+++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988776 476665
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-07 Score=106.89 Aligned_cols=190 Identities=13% Similarity=0.036 Sum_probs=151.8
Q ss_pred HccCCchHHHHHHHHHH--------HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHc
Q 004938 361 AHLGVLDQAQRIHLYID--------KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIH 429 (722)
Q Consensus 361 ~~~g~~~~a~~i~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 429 (722)
...|++++|.+.++.++ +. .+.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 77899999999999988 33 245677888899999999999999999998874 5778999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 004938 430 GDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALE 508 (722)
Q Consensus 430 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 508 (722)
|++++|+..|++..+. .|+ ...+..+..++...|++++ .+.|+.+.+ ..+.+...|..+..+|.+.|++++|++
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999984 565 5678889999999999999 999999987 344567889999999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHHcCC-----HHHHHHHHHHHHccCCCCCchH
Q 004938 509 LVETM-PFAPN-VVIWGSLMAACRVHGE-----IELAEFAAKQLLQLDPDHDGAL 556 (722)
Q Consensus 509 ~~~~~-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~~ 556 (722)
.+++. ...|+ ...|..+..++...++ .+...++.+.+.++.++++...
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~ 610 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVL 610 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence 99998 67786 4677777777766555 3445555555555656555443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.3e-07 Score=87.80 Aligned_cols=172 Identities=10% Similarity=-0.011 Sum_probs=129.8
Q ss_pred HHHHHHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHhH
Q 004938 404 AREVFERMR-RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAG----LVDEGREIFASMT 478 (722)
Q Consensus 404 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~ 478 (722)
|.+.|++.. ..+..++..+...|...+++++|++.|++..+.| +...+..+...+.. + +.++|.++|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 344444433 2466677777777777888888888888877754 45556666666666 5 7888888888886
Q ss_pred hhcCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 004938 479 NEYNIPPKYEHYGCMVDLFGR----ANLLREALELVETM-PFAPN---VVIWGSLMAACRV----HGEIELAEFAAKQLL 546 (722)
Q Consensus 479 ~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~ 546 (722)
+. -+...+..|..+|.. .+++++|++.+++. ...|. ...+..|...|.. .++.++|...++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 52 345667777778876 78899999999887 44443 6788888888888 789999999999999
Q ss_pred ccCCCCCchHHHHHHHhhhC-C-----CcchHHHHHHHHHhCCC
Q 004938 547 QLDPDHDGALVLLSNIYAKD-K-----RWQDVGELRKSMKERGI 584 (722)
Q Consensus 547 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~g~ 584 (722)
++ |.++..+..|+.+|... | ++++|.+.+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88 66777899999999754 3 89999999999888764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.78 E-value=9.1e-08 Score=90.33 Aligned_cols=127 Identities=8% Similarity=0.034 Sum_probs=97.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh
Q 004938 421 SMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR 499 (722)
Q Consensus 421 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 499 (722)
.+...|...|++++|+..|++.++. .|+ ...+..+..++...|++++|...|+.+.+ ..|.+...+..+...|..
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHH
Confidence 3788889999999999999998884 565 56788888899999999999999999987 345567788888888876
Q ss_pred cCC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 004938 500 ANL--LREALELVETMPFAPNV--VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552 (722)
Q Consensus 500 ~g~--~~~A~~~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 552 (722)
.|. .+++...++... .|+. ..|..+..++...|++++|+..+++++++.|++
T Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 654 445666666653 3443 345556666777899999999999999999974
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.77 E-value=6.8e-08 Score=97.46 Aligned_cols=219 Identities=11% Similarity=0.045 Sum_probs=145.2
Q ss_pred cCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 004938 328 NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREV 407 (722)
Q Consensus 328 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 407 (722)
.|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~~--~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KTS--F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CCC--S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--ccc--c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 456677777777665431 110 0 11135666666665543 3456677777777777
Q ss_pred HHhcCC-----CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 004938 408 FERMRR-----RN----VISWTSMINAFAIHGDARNALIFFNKMKDES---IDPN--GVTFIGVLYACSHAGLVDEGREI 473 (722)
Q Consensus 408 ~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~~ 473 (722)
|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...+.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 766542 11 3467778888888899999999888876521 1122 2467777788888 999999999
Q ss_pred HHHhHhhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 004938 474 FASMTNEYNIPPK----YEHYGCMVDLFGRANLLREALELVETM-PF---APN----VVIWGSLMAACRVHGEIELAEFA 541 (722)
Q Consensus 474 ~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~ 541 (722)
|+.....+.-..+ ...+..+...|.+.|++++|++.+++. .+ .++ ...+..++..+...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9888763211111 356778889999999999999999876 11 122 23566667777888999999999
Q ss_pred HHHHHccCCCCCch-----HHHHHHHhhhCCCcchHHH
Q 004938 542 AKQLLQLDPDHDGA-----LVLLSNIYAKDKRWQDVGE 574 (722)
Q Consensus 542 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 574 (722)
+++++ ++|+.... ...++..| ..|+.+.+.+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 99976543 33455545 4566655554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=6.1e-08 Score=107.18 Aligned_cols=159 Identities=10% Similarity=0.040 Sum_probs=126.0
Q ss_pred cCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 004938 398 CGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREI 473 (722)
Q Consensus 398 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 473 (722)
.|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+. .|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998875 45788999999999999999999999999984 565 56788899999999999999999
Q ss_pred HHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CCHHHHHHHHHHHHcc
Q 004938 474 FASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVH---GEIELAEFAAKQLLQL 548 (722)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 548 (722)
+++..+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999873 3456788999999999999999999999987 4445 567888999999999 9999999999999999
Q ss_pred CCCCCchHHHHH
Q 004938 549 DPDHDGALVLLS 560 (722)
Q Consensus 549 ~p~~~~~~~~l~ 560 (722)
+|++...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999988887776
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.75 E-value=2e-07 Score=89.24 Aligned_cols=184 Identities=16% Similarity=0.016 Sum_probs=132.4
Q ss_pred hhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh----HHHHH
Q 004938 350 KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG--DLRVNNAIIDMYAKCGSLESAREVFERMRR--RNV----ISWTS 421 (722)
Q Consensus 350 ~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~ 421 (722)
...+......+...|++++|...++.+++..... ....+..+..+|.+.|++++|...|+++.+ |+. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3455566677889999999999999999863221 135677889999999999999999999864 322 24555
Q ss_pred HHHHHHH------------------cCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhHhhcC
Q 004938 422 MINAFAI------------------HGDARNALIFFNKMKDESIDPNGVT-FIGVLYACSHAGLVDEGREIFASMTNEYN 482 (722)
Q Consensus 422 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 482 (722)
+..++.. .|+.++|+..|+++++. .|+... ...... .+ .+...+..
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----l~------~~~~~~~~--- 148 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----LV------FLKDRLAK--- 148 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----HH------HHHHHHHH---
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----HH------HHHHHHHH---
Confidence 5555554 57899999999999984 676532 211111 00 11111111
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCc
Q 004938 483 IPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN----VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554 (722)
Q Consensus 483 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 554 (722)
....+...|.+.|++++|+..++++ ...|+ ...+..+..++.+.|+.++|...++++....|++..
T Consensus 149 ------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 149 ------YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ------HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 2235678889999999999999987 33343 256888899999999999999999999999998754
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.74 E-value=5.2e-08 Score=83.54 Aligned_cols=114 Identities=16% Similarity=0.061 Sum_probs=81.7
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 004938 447 IDPNG-VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWG 523 (722)
Q Consensus 447 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 523 (722)
+.|+. ..+......+.+.|++++|++.|+...+ ..|.+...|..+..+|.+.|++++|++.+++. .+.| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 34443 3455666667777777777777777665 23445666777777777777777777777766 3344 467788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHH
Q 004938 524 SLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNI 562 (722)
Q Consensus 524 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 562 (722)
.+..++...|++++|+..|+++++++|++..++..|.++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 888888888889999999999998899888777777654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.73 E-value=6.7e-08 Score=88.48 Aligned_cols=157 Identities=10% Similarity=-0.007 Sum_probs=98.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004938 388 NNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHA 464 (722)
Q Consensus 388 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 464 (722)
...+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++.... .|+.. +..+...+.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~-~~~~~~~~~-- 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNS-YKSLIAKLE-- 83 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHH-HHHHHHHHH--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChH-HHHHHHHHH--
Confidence 34455556666666666666666553 34455666666666666666666666665442 23221 111110000
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 004938 465 GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAA 542 (722)
Q Consensus 465 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 542 (722)
+.+.+...+|.+.+++. ...| +...|..+...+...|++++|...+
T Consensus 84 --------------------------------~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 84 --------------------------------LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp --------------------------------HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------------------------HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 00111112244444444 2345 4778888899999999999999999
Q ss_pred HHHHccCCCC--CchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 543 KQLLQLDPDH--DGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 543 ~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
+++++.+|+. +..+..++.+|...|+.++|...+++...
T Consensus 132 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 132 WNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 9999999875 45888999999999999999998887643
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.3e-07 Score=104.41 Aligned_cols=146 Identities=10% Similarity=-0.013 Sum_probs=97.9
Q ss_pred cCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHH
Q 004938 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFF 439 (722)
Q Consensus 363 ~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 439 (722)
.|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467788888888777653 34567777888888888888888888887654 35667888888888888888888888
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhc---CCHHHHHHHHHhC
Q 004938 440 NKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRA---NLLREALELVETM 513 (722)
Q Consensus 440 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~ 513 (722)
++..+. .|+ ...+..+..++...|++++|.+.|+.+.+. .+.+...+..+...+... |++++|.+.+++.
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 888774 444 457777778888888888888888888763 344566777888888888 8888888888776
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.72 E-value=2.5e-08 Score=88.33 Aligned_cols=97 Identities=11% Similarity=-0.016 Sum_probs=84.0
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhh
Q 004938 487 YEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564 (722)
Q Consensus 487 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 564 (722)
...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..|+++++++|+++.++..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 456667777788888888888888877 4445 57889999999999999999999999999999999999999999999
Q ss_pred hCCCcchHHHHHHHHHhCC
Q 004938 565 KDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 565 ~~g~~~~a~~~~~~m~~~g 583 (722)
..|++++|.+.+++..+..
T Consensus 116 ~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999988754
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.2e-07 Score=86.87 Aligned_cols=158 Identities=11% Similarity=0.040 Sum_probs=103.8
Q ss_pred hHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHHH-HHH
Q 004938 352 TMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR--RNVISWTSMINA-FAI 428 (722)
Q Consensus 352 t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~-~~~ 428 (722)
.+......+...|++++|...++.+++.. +.+...+..+...|.+.|++++|...|++..+ |+...+..+... +..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHh
Confidence 45566778889999999999999988753 45678889999999999999999999999875 333333222211 122
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHH
Q 004938 429 HGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507 (722)
Q Consensus 429 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 507 (722)
.+...+|+..|++..+ ..|+ ...+..+..++...|++++|...|+.+.+...-..+...+..+...|...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2233346777777766 3454 456666667777777777777777776652111112335555666666666666665
Q ss_pred HHHHh
Q 004938 508 ELVET 512 (722)
Q Consensus 508 ~~~~~ 512 (722)
..+++
T Consensus 165 ~~y~~ 169 (176)
T 2r5s_A 165 SKYRR 169 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=4.8e-08 Score=86.48 Aligned_cols=97 Identities=9% Similarity=-0.009 Sum_probs=81.9
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHh
Q 004938 486 KYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIY 563 (722)
Q Consensus 486 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 563 (722)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3456667777788888888888888876 3344 6778888888999999999999999999999999999999999999
Q ss_pred hhCCCcchHHHHHHHHHhC
Q 004938 564 AKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 564 ~~~g~~~~a~~~~~~m~~~ 582 (722)
...|++++|.+.++...+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988764
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.4e-06 Score=86.66 Aligned_cols=225 Identities=10% Similarity=0.026 Sum_probs=115.8
Q ss_pred hcCC-chHHHHHHHHHHhCCCCCChh-hHHHHHHHHHccC--CchHHHHHHHHHHHcCCCCChhHHHHHHHHH----Hhc
Q 004938 327 ENNH-PQEALKLFNEMQVCGMKPDKV-TMLSVISACAHLG--VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY----AKC 398 (722)
Q Consensus 327 ~~g~-~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g--~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~----~~~ 398 (722)
+.|. .++|+++++.++.. .|+.. .++.--.++...+ +++++...+..++..+ +.+..+|+.-...+ .+.
T Consensus 44 ~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 44 KAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhc
Confidence 3444 45788888777764 45443 3455555556666 7777777777776653 33444444333333 333
Q ss_pred ---CCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----
Q 004938 399 ---GSLESAREVFERMRR---RNVISWTSMINAFAIHGDAR--NALIFFNKMKDESIDPNGVTFIGVLYACSHAGL---- 466 (722)
Q Consensus 399 ---g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~---- 466 (722)
++++++.++++.+.+ +|..+|+--.-.+.+.|.++ ++++.++++++.. .-|...|..-.....+.+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchh
Confidence 566666666666553 45556666555555566655 6666666666532 2233444444444444444
Q ss_pred --HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHHcCCHHHH
Q 004938 467 --VDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLRE-ALELVETM-PF----APNVVIWGSLMAACRVHGEIELA 538 (722)
Q Consensus 467 --~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~ll~~~~~~g~~~~a 538 (722)
++++++.++.++. ..+-|...|+.+..++.+.|+..+ +.++.++. .. ..+...+..+...+.+.|+.++|
T Consensus 200 ~~~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 200 NTIDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 5555555555554 233344455555555555444222 33344433 11 12344455555555555555555
Q ss_pred HHHHHHHHc-cCCCCCchHH
Q 004938 539 EFAAKQLLQ-LDPDHDGALV 557 (722)
Q Consensus 539 ~~~~~~~~~-~~p~~~~~~~ 557 (722)
.++++.+.+ .+|-....+.
T Consensus 278 ~~~~~~l~~~~Dpir~~yW~ 297 (306)
T 3dra_A 278 RTVYDLLKSKYNPIRSNFWD 297 (306)
T ss_dssp HHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHhccChHHHHHHH
Confidence 555555553 4554444333
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.67 E-value=5.9e-08 Score=97.91 Aligned_cols=196 Identities=8% Similarity=-0.030 Sum_probs=149.3
Q ss_pred cCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004938 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM 442 (722)
Q Consensus 363 ~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 442 (722)
.|++++|.+++++..+..- .. .+...+++++|...|.+. ...|...|++++|+..|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHH
Confidence 5677889999888876421 11 011158899998887764 56788899999999999987
Q ss_pred HHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHhC
Q 004938 443 KDE----SIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK----YEHYGCMVDLFGRANLLREALELVETM 513 (722)
Q Consensus 443 ~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 513 (722)
.+. |-.+. ..+|..+...+...|++++|...|+...+-+.-..+ ...+..+..+|.+ |++++|++.+++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 662 11111 247888889999999999999999988763211111 3567888899988 9999999999886
Q ss_pred -CC---CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCc------hHHHHHHHhhhCCCcchHHHHHHHH
Q 004938 514 -PF---APN----VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG------ALVLLSNIYAKDKRWQDVGELRKSM 579 (722)
Q Consensus 514 -~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a~~~~~~m 579 (722)
.+ ..+ ..++..+...+...|++++|+..+++++++.|++.. .+..++.++...|++++|...+++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11 111 457888899999999999999999999998765542 5667788888999999999999988
Q ss_pred H
Q 004938 580 K 580 (722)
Q Consensus 580 ~ 580 (722)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 7
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.66 E-value=2.3e-05 Score=84.07 Aligned_cols=200 Identities=14% Similarity=0.072 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccC-C-chHHHHHHHHHHhcCCHHHH-HHHHhccC-
Q 004938 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK-N-LVVSTAMVSGYSRAGQVEDA-RLIFDQMV- 311 (722)
Q Consensus 236 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~li~~~~~~g~~~~A-~~~f~~~~- 311 (722)
.+..+++.++... +.+..+|...+..+.+.|+++.|..+|++.... . ...|. .|....+.++. .++.+...
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~ 271 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAVYGDLKRKYSM 271 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHHHHHHHHHHHh
Confidence 3556677766653 445666776777777777777777777665332 1 11121 12221111111 11111100
Q ss_pred -C-------C---CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHH-ccCCchHHHHHHHHHHHc
Q 004938 312 -E-------K---DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA-HLGVLDQAQRIHLYIDKN 379 (722)
Q Consensus 312 -~-------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~~~a~~i~~~~~~~ 379 (722)
. + ....|-..+....+.++.+.|..+|++. ... ..+...|......-. ..++.+.|+.+++..++.
T Consensus 272 ~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~ 349 (493)
T 2uy1_A 272 GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK 349 (493)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 0 0 1134555555555666677777777776 211 112222221111111 223577777777777664
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004938 380 AFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444 (722)
Q Consensus 380 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 444 (722)
. +.+...+...++...+.|+.+.|+.+|+++. .....|...+.--...|+.+.+..+++++..
T Consensus 350 ~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 350 H-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 2334445556666667777777777777763 3456666666665666776666666666553
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.64 E-value=8.4e-07 Score=88.70 Aligned_cols=164 Identities=6% Similarity=-0.063 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC----cc
Q 004938 418 SWTSMINAFAIHGDARNALIFFNKMKDESIDPNG-----VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK----YE 488 (722)
Q Consensus 418 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~ 488 (722)
.+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|...++...+...-..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4455667778888888998888887774222111 12334555667788999999998887752211112 34
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC------CC
Q 004938 489 HYGCMVDLFGRANLLREALELVETM----PFAPN-----VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD------HD 553 (722)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 553 (722)
.|+.+...|...|++++|++.++++ ...|+ ..++..+...|...|++++|...+++++++.++ ..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788888999999999999888775 11222 257888999999999999999999999876533 14
Q ss_pred chHHHHHHHhhhCCCcchH-HHHHHHHHh
Q 004938 554 GALVLLSNIYAKDKRWQDV-GELRKSMKE 581 (722)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 581 (722)
.+|..++.+|...|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 5788999999999999999 777776653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.63 E-value=2.2e-06 Score=85.62 Aligned_cols=160 Identities=7% Similarity=-0.036 Sum_probs=114.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCc----chHHH
Q 004938 422 MINAFAIHGDARNALIFFNKMKDES-IDPNGV----TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY----EHYGC 492 (722)
Q Consensus 422 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~ 492 (722)
.+..+...|++++|..++++..... ..|+.. .+..+...+...|++++|...|+.+.+...-.++. ..++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566777888888888888877632 122211 22345556667778888888888887622222221 25778
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-----CC---CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------CchHH
Q 004938 493 MVDLFGRANLLREALELVETM-----PF---APN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH------DGALV 557 (722)
Q Consensus 493 li~~~~~~g~~~~A~~~~~~~-----~~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 557 (722)
+...|...|++++|++.++++ .. .+. ..+|..+...|...|++++|...+++++++.++. ...+.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888888888888888775 11 111 2478888999999999999999999999875443 45788
Q ss_pred HHHHHhhhCCC-cchHHHHHHHHHh
Q 004938 558 LLSNIYAKDKR-WQDVGELRKSMKE 581 (722)
Q Consensus 558 ~l~~~~~~~g~-~~~a~~~~~~m~~ 581 (722)
.++.+|.+.|+ +++|.+.+++..+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999998887754
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.3e-06 Score=82.38 Aligned_cols=146 Identities=8% Similarity=-0.042 Sum_probs=104.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 004938 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLV 467 (722)
Q Consensus 388 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 467 (722)
+..+...+...|++++|.+.|++...++...|..+...|...|++++|+..|++..... +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34556667788888888888888877777888888888888888888888888877742 22345677777788888888
Q ss_pred HHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004938 468 DEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLL 546 (722)
Q Consensus 468 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 546 (722)
++|.+.|+.+.+. .+.+.... +...| +...|+ ...|..+...+...|++++|...+++++
T Consensus 88 ~~A~~~~~~al~~--~~~~~~~~------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQ--LRGNQLID------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHT--TTTCSEEE------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCccHHH------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8888888877762 22221100 00000 023343 4678888889999999999999999999
Q ss_pred ccCCCCC
Q 004938 547 QLDPDHD 553 (722)
Q Consensus 547 ~~~p~~~ 553 (722)
++.|++.
T Consensus 149 ~~~p~~~ 155 (213)
T 1hh8_A 149 SMKSEPR 155 (213)
T ss_dssp TTCCSGG
T ss_pred HcCcccc
Confidence 9999863
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-05 Score=80.22 Aligned_cols=212 Identities=15% Similarity=0.147 Sum_probs=169.6
Q ss_pred CchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC--CHHHHHHHHHhcCC---CChHHHHHHHHHH----HHc---CCH
Q 004938 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG--SLESAREVFERMRR---RNVISWTSMINAF----AIH---GDA 432 (722)
Q Consensus 365 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~ 432 (722)
..++|......++..+ +.+..+|+.--..+...| +++++++.++.+.. .+..+|+.-...+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3467888888888864 445667787777788888 99999999998874 4567787765555 555 789
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHH--HHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCC------H
Q 004938 433 RNALIFFNKMKDESIDP-NGVTFIGVLYACSHAGLVD--EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL------L 503 (722)
Q Consensus 433 ~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~ 503 (722)
++++.+++++.+. .| |...|..-...+.+.|.++ +++++++.+.+ ..+-+...|+....++.+.|. +
T Consensus 127 ~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~--~d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 127 YREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID--TDLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccchhhhH
Confidence 9999999999985 44 5567777777788888888 99999999997 345667778877777777776 8
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHccC---CCCCchHHHHHHHhhhCCCcchHHHHHH
Q 004938 504 REALELVETM-PFAP-NVVIWGSLMAACRVHGE-IELAEFAAKQLLQLD---PDHDGALVLLSNIYAKDKRWQDVGELRK 577 (722)
Q Consensus 504 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 577 (722)
+++++.++++ ...| |...|+-+...+.+.|+ .+.....++++++++ |.++.++..++.+|.+.|+.++|.++++
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 9999999887 4444 78899999888888877 444667888888876 8888899999999999999999999999
Q ss_pred HHHh
Q 004938 578 SMKE 581 (722)
Q Consensus 578 ~m~~ 581 (722)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9976
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=2.8e-07 Score=91.81 Aligned_cols=159 Identities=8% Similarity=-0.069 Sum_probs=87.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHH
Q 004938 384 DLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFI-GVLY 459 (722)
Q Consensus 384 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~ 459 (722)
+...+..+...+...|++++|...|++..+ .+...+..+...|.+.|++++|+..+++.... .|+..... ....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~ 193 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHH
Confidence 344444555555556666666666655442 24455555566666666666666666655442 34433211 1122
Q ss_pred HHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHcCCH
Q 004938 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN---VVIWGSLMAACRVHGEI 535 (722)
Q Consensus 460 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~~g~~ 535 (722)
.+...+..++|.+.++.... ..|.+...+..+...|...|++++|++.++++ ...|+ ...+..++..+...|+.
T Consensus 194 ~l~~~~~~~~a~~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVA--ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHhhcccCccHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 34445555555666665554 23344556666666666666666666666655 22332 45666677777777777
Q ss_pred HHHHHHHHHHH
Q 004938 536 ELAEFAAKQLL 546 (722)
Q Consensus 536 ~~a~~~~~~~~ 546 (722)
++|...|++.+
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 77777666654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.60 E-value=9.7e-07 Score=83.33 Aligned_cols=124 Identities=12% Similarity=0.015 Sum_probs=93.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 004938 456 GVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHG 533 (722)
Q Consensus 456 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 533 (722)
.+...+...|++++|...|+.+. +|+...+..+...|.+.|++++|++.+++. ...| +...|..+...+...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 34445555666666666665442 345556666666666666666666666665 2233 5678888899999999
Q ss_pred CHHHHHHHHHHHHccCCCCC----------------chHHHHHHHhhhCCCcchHHHHHHHHHhCCC
Q 004938 534 EIELAEFAAKQLLQLDPDHD----------------GALVLLSNIYAKDKRWQDVGELRKSMKERGI 584 (722)
Q Consensus 534 ~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 584 (722)
++++|...+++++++.|++. ..+..++.+|...|++++|.+.++...+...
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 99999999999999888877 8899999999999999999999999987653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.8e-07 Score=80.08 Aligned_cols=96 Identities=9% Similarity=0.055 Sum_probs=88.2
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhh
Q 004938 487 YEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564 (722)
Q Consensus 487 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 564 (722)
...+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..++.+|.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 456778899999999999999999987 4455 57899999999999999999999999999999999999999999999
Q ss_pred hCCCcchHHHHHHHHHhC
Q 004938 565 KDKRWQDVGELRKSMKER 582 (722)
Q Consensus 565 ~~g~~~~a~~~~~~m~~~ 582 (722)
..|++++|.+.+++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 999999999999998774
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.58 E-value=1.2e-07 Score=94.11 Aligned_cols=191 Identities=12% Similarity=-0.007 Sum_probs=115.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 004938 385 LRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYA 460 (722)
Q Consensus 385 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a 460 (722)
...+..+...+.+.|++++|...|++..+ .+...|..+...|...|++++|+..+++..+ +.|+ ...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 34455566666677777777777766542 3556677777777777777777777777666 3444 3456666777
Q ss_pred HHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004938 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEF 540 (722)
Q Consensus 461 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 540 (722)
+...|++++|...|+.+.+.. +.+...+...+....+......... .......++......+ ..+ ..|+.++|.+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~ 156 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAERERELE 156 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHHH
Confidence 777777777777777766521 1111112222222222111111111 1222233344443333 222 3688899999
Q ss_pred HHHHHHccCCCCCchHHHHHHHhhhC-CCcchHHHHHHHHHhC
Q 004938 541 AAKQLLQLDPDHDGALVLLSNIYAKD-KRWQDVGELRKSMKER 582 (722)
Q Consensus 541 ~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 582 (722)
.++++++++|++......+..++.+. +.+++|.++|.+..+.
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999998876667777777766 7788999999888654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.56 E-value=6.1e-07 Score=80.71 Aligned_cols=126 Identities=12% Similarity=0.050 Sum_probs=88.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 004938 454 FIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRV 531 (722)
Q Consensus 454 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 531 (722)
+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 444445555566666666666665542 2334555666666666677777777666665 2233 56778888888999
Q ss_pred cCCHHHHHHHHHHHHccCCCCCchHHHH--HHHhhhCCCcchHHHHHHHHHh
Q 004938 532 HGEIELAEFAAKQLLQLDPDHDGALVLL--SNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 532 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l--~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
.|++++|...++++++++|++...+..+ +..+...|++++|.+.++...+
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999988777544 4447788999999998887654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.56 E-value=6.7e-07 Score=75.73 Aligned_cols=114 Identities=21% Similarity=0.202 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 004938 452 VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PF-APNVVIWGSLMAAC 529 (722)
Q Consensus 452 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~ 529 (722)
..+..+...+...|++++|.++|+.+.+. .+.+...+..+...+.+.|++++|...++++ .. +.+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 34555555566666666666666666542 2334455666666666777777777766665 22 23567788888889
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCC
Q 004938 530 RVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDK 567 (722)
Q Consensus 530 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 567 (722)
...|++++|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999999999999888888888776543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.2e-06 Score=82.49 Aligned_cols=182 Identities=10% Similarity=0.009 Sum_probs=108.9
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhCCCCCChhh-HHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 004938 320 AMISGYAENNHPQEALKLFNEMQVCGMKPDKVT-MLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398 (722)
Q Consensus 320 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~ 398 (722)
.....+...|++++|+..|++.... .|+... +.. . ..... ........+.+...|.+.
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-~----~~~~~--------------~~~~~~~~~~lg~~~~~~ 67 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-T----NVDKN--------------SEISSKLATELALAYKKN 67 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-H----HSCTT--------------SHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-h----hhcch--------------hhhhHHHHHHHHHHHHHC
Confidence 3445566778888888888877764 343221 111 0 00000 001122234467777888
Q ss_pred CCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC--HHHHHH
Q 004938 399 GSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGL--VDEGRE 472 (722)
Q Consensus 399 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~--~~~a~~ 472 (722)
|++++|...|++..+ .+...|..+...|...|++++|+..|++.++ +.|+ ..++..+..++...|. .+.+..
T Consensus 68 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~ 145 (208)
T 3urz_A 68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLET 145 (208)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 888888888877653 4567788888888888888888888888877 3555 4466666666655543 334444
Q ss_pred HHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 004938 473 IFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPNVVIWGSLMA 527 (722)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~ 527 (722)
.+..... ..|....+..+...+...|++++|...|++. ...|+......+..
T Consensus 146 ~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 146 DYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4444321 1222223344556666778888888888876 67787665555444
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=6.4e-07 Score=76.62 Aligned_cols=116 Identities=13% Similarity=0.030 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 004938 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACR 530 (722)
Q Consensus 453 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 530 (722)
.+..+...+...|++++|...|+.+... .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 4555555566666666666666666552 2334556666666677777777777776665 2233 4677888888899
Q ss_pred HcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcc
Q 004938 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQ 570 (722)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 570 (722)
..|++++|...++++++..|+++..+..++.++...|+++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999889999999998888763
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.54 E-value=3.1e-07 Score=80.62 Aligned_cols=96 Identities=10% Similarity=-0.088 Sum_probs=79.5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhh
Q 004938 487 YEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564 (722)
Q Consensus 487 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 564 (722)
...+..+...+.+.|++++|...|++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 344556667777888888888888776 3344 57788888888999999999999999999999999999999999999
Q ss_pred hCCCcchHHHHHHHHHhC
Q 004938 565 KDKRWQDVGELRKSMKER 582 (722)
Q Consensus 565 ~~g~~~~a~~~~~~m~~~ 582 (722)
..|++++|.+.++...+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999888764
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=6.4e-07 Score=77.02 Aligned_cols=115 Identities=13% Similarity=0.069 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 004938 452 VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAAC 529 (722)
Q Consensus 452 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 529 (722)
..+..+...+...|++++|...|+.+.+ ..+.+...+..+...|...|++++|++.+++. ...| +...|..+...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3455555556666666666666666554 22334555666666666667777777666665 2233 567888888889
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCC
Q 004938 530 RVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKR 568 (722)
Q Consensus 530 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 568 (722)
...|++++|...++++++.+|++...+..++.++...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999988888888888876653
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.5e-06 Score=78.77 Aligned_cols=171 Identities=10% Similarity=-0.020 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC----ChHHHHHHH
Q 004938 201 EVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCG----CMDMAKGLF 276 (722)
Q Consensus 201 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 276 (722)
+|++.|++..+.| +...+..+-..+...+++++|...++...+.| ++..+..|..+|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3445555555443 44555555555555566666666666665544 44555555555555 4 566666666
Q ss_pred HhcccC-CchHHHHHHHHHHh----cCCHHHHHHHHhccCCCC-----cchHHHHHHHHHh----cCCchHHHHHHHHHH
Q 004938 277 DKVLLK-NLVVSTAMVSGYSR----AGQVEDARLIFDQMVEKD-----LICWSAMISGYAE----NNHPQEALKLFNEMQ 342 (722)
Q Consensus 277 ~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~f~~~~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~ 342 (722)
++..++ +..++..+...|.. .++.++|.+.|++..+.+ +.++..|...|.. .+++++|+.+|++..
T Consensus 77 ~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 77 EKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 655443 34445555555554 556666666666665543 3566666666666 667777777777776
Q ss_pred hCCCCCChhhHHHHHHHHHcc-C-----CchHHHHHHHHHHHcC
Q 004938 343 VCGMKPDKVTMLSVISACAHL-G-----VLDQAQRIHLYIDKNA 380 (722)
Q Consensus 343 ~~g~~p~~~t~~~ll~~~~~~-g-----~~~~a~~i~~~~~~~~ 380 (722)
+. ..+...+..+...|... | +.++|...++...+.|
T Consensus 157 ~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 157 SL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred Hc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 64 12333444555555432 2 6677777777666655
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.8e-05 Score=78.95 Aligned_cols=158 Identities=9% Similarity=-0.037 Sum_probs=119.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC---Ch------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 004938 391 IIDMYAKCGSLESAREVFERMRRR---NV------ISWTSMINAFAIHGDARNALIFFNKMKDESID-PN----GVTFIG 456 (722)
Q Consensus 391 li~~~~~~g~~~~A~~~~~~~~~~---~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ 456 (722)
.+..+...|++++|.+.+++..+. +. ..+..+...+...|++++|+..|++....... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 467788899999999999987641 11 13334666677788999999999999884222 22 226888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhhc----CCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 004938 457 VLYACSHAGLVDEGREIFASMTNEY----NIPPK-YEHYGCMVDLFGRANLLREALELVETM-------PFAPN-VVIWG 523 (722)
Q Consensus 457 ll~a~~~~g~~~~a~~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~ 523 (722)
+..++...|++++|..+|+.+.+.. +..+. ..+|..+...|.+.|++++|++.+++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999999988522 11111 247788999999999999999998876 22222 57888
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHHcc
Q 004938 524 SLMAACRVHG-EIELAEFAAKQLLQL 548 (722)
Q Consensus 524 ~ll~~~~~~g-~~~~a~~~~~~~~~~ 548 (722)
.+...+...| ++++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 9999999999 579999999998864
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.46 E-value=7.5e-07 Score=90.93 Aligned_cols=143 Identities=16% Similarity=0.098 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 004938 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495 (722)
Q Consensus 416 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 495 (722)
...|..+...|.+.|++++|+..|++.+.. .|+...+ ..+++.++-. . ....|..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~~~-~--------~~~~~~nla~ 204 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKAQA-L--------RLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHHHH-H--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHHHH-H--------HHHHHHHHHH
Confidence 445666666666667777777776666653 3332100 0001110000 0 0246677777
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchH-
Q 004938 496 LFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDV- 572 (722)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a- 572 (722)
+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..|+++++++|++..++..++.++...|++++|
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888776 3344 5778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 004938 573 GELRKSMK 580 (722)
Q Consensus 573 ~~~~~~m~ 580 (722)
...++.|.
T Consensus 285 ~~~~~~~~ 292 (336)
T 1p5q_A 285 KKLYANMF 292 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44666664
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=2.7e-07 Score=81.56 Aligned_cols=103 Identities=8% Similarity=-0.063 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 004938 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACR 530 (722)
Q Consensus 453 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 530 (722)
.+..+...+...|++++|...|+.+.. ..+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 455566667777777777777777765 23445666777777777778888888777776 3344 4577888888999
Q ss_pred HcCCHHHHHHHHHHHHccCCCCCchHH
Q 004938 531 VHGEIELAEFAAKQLLQLDPDHDGALV 557 (722)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~p~~~~~~~ 557 (722)
..|++++|+..+++++++.|+++....
T Consensus 101 ~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 999999999999999999998876543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.6e-06 Score=71.80 Aligned_cols=98 Identities=14% Similarity=0.005 Sum_probs=85.4
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--CCchHHHHHH
Q 004938 486 KYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD--HDGALVLLSN 561 (722)
Q Consensus 486 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 561 (722)
+...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++..|+ +...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4567788888888999999999988876 3333 5778888999999999999999999999999999 8899999999
Q ss_pred HhhhC-CCcchHHHHHHHHHhCC
Q 004938 562 IYAKD-KRWQDVGELRKSMKERG 583 (722)
Q Consensus 562 ~~~~~-g~~~~a~~~~~~m~~~g 583 (722)
+|... |++++|.+.++...+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 99999 99999999999987754
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.44 E-value=7.5e-07 Score=95.53 Aligned_cols=117 Identities=12% Similarity=0.059 Sum_probs=88.1
Q ss_pred HHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 004938 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIEL 537 (722)
Q Consensus 460 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 537 (722)
.+.+.|++++|.+.|+++.+. .+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 345566777777777766652 3334566777777777777777777777776 3445 46788999999999999999
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHH--hhhCCCcchHHHHHHH
Q 004938 538 AEFAAKQLLQLDPDHDGALVLLSNI--YAKDKRWQDVGELRKS 578 (722)
Q Consensus 538 a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 578 (722)
|+..++++++++|++...+..++.+ +.+.|++++|.+.+++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999988888 8889999999999874
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.40 E-value=9.7e-07 Score=75.41 Aligned_cols=95 Identities=14% Similarity=0.038 Sum_probs=74.6
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhh
Q 004938 488 EHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAK 565 (722)
Q Consensus 488 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 565 (722)
..+..+...+.+.|++++|++.|++. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34556666777777777777777766 3334 567788888888888888888888888888888888888888888888
Q ss_pred CCCcchHHHHHHHHHhC
Q 004938 566 DKRWQDVGELRKSMKER 582 (722)
Q Consensus 566 ~g~~~~a~~~~~~m~~~ 582 (722)
.|++++|.+.+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 88888888888887664
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.39 E-value=4.9e-07 Score=82.67 Aligned_cols=117 Identities=13% Similarity=0.122 Sum_probs=66.2
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHHcCCH--HHH
Q 004938 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAA-CRVHGEI--ELA 538 (722)
Q Consensus 464 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~~--~~a 538 (722)
.|++++|...++...+. .+.+...+..+...|...|++++|...+++. ...| +...|..+... +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 34444555555544431 2233445555555555555555555555554 2222 44555556655 5566666 777
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 539 EFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 539 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
...++++++.+|+++..+..++.+|...|++++|...+++..+.
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 77777777777776666677777777777777777777666654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.39 E-value=1.1e-06 Score=77.74 Aligned_cols=99 Identities=9% Similarity=0.000 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 004938 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACR 530 (722)
Q Consensus 453 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 530 (722)
.+..+...+.+.|++++|...|+.+.. ..|.+...|..+..+|.+.|++++|++.|++. .+.| +...|..+..++.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 444555555666666666666666654 23334556666666666666666666666665 3344 3567777888888
Q ss_pred HcCCHHHHHHHHHHHHccCCCCC
Q 004938 531 VHGEIELAEFAAKQLLQLDPDHD 553 (722)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~p~~~ 553 (722)
..|++++|...|++++++.|+++
T Consensus 116 ~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCHH
Confidence 88888888888888888888753
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.4e-06 Score=82.87 Aligned_cols=134 Identities=13% Similarity=-0.043 Sum_probs=83.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC--cchHHHHHHHHHh
Q 004938 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK--YEHYGCMVDLFGR 499 (722)
Q Consensus 422 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~ 499 (722)
....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++.+
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHHH
Confidence 444555666666666666665542 344434444444566667777777766644321 1 111 2245566677777
Q ss_pred cCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHH
Q 004938 500 ANLLREALELVETM---PFAPN--VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLS 560 (722)
Q Consensus 500 ~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 560 (722)
.|++++|++.|++. +..|. ...+..+..++...|+.++|...|+++++.+|+ +.+...|.
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 77777777777766 22143 346667777888899999999999999999998 65555553
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=1e-06 Score=74.69 Aligned_cols=95 Identities=17% Similarity=0.005 Sum_probs=82.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhh
Q 004938 488 EHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAK 565 (722)
Q Consensus 488 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 565 (722)
..+..+...+.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34556778888999999999999887 4445 678888899999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhC
Q 004938 566 DKRWQDVGELRKSMKER 582 (722)
Q Consensus 566 ~g~~~~a~~~~~~m~~~ 582 (722)
.|++++|...+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999988764
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=4.4e-06 Score=69.73 Aligned_cols=108 Identities=13% Similarity=0.050 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 004938 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACR 530 (722)
Q Consensus 453 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 530 (722)
.+..+...+...|++++|...|+..... .+.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444444455555555555555555441 2233445555555556666666666665554 2223 4567777777888
Q ss_pred HcCCHHHHHHHHHHHHccCCCCCchHHHHHHH
Q 004938 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNI 562 (722)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 562 (722)
..|++++|...++++++.+|+++..+..++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 88888888888888888888877766666554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.35 E-value=3e-06 Score=82.22 Aligned_cols=182 Identities=9% Similarity=-0.031 Sum_probs=135.3
Q ss_pred hcCCHHHHHHHHHhcCC---CChHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHcCCCCCH---------------
Q 004938 397 KCGSLESAREVFERMRR---RNVISWTSM-------INAFAIHGDARNALIFFNKMKDESIDPNG--------------- 451 (722)
Q Consensus 397 ~~g~~~~A~~~~~~~~~---~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 451 (722)
..++.+.|.+.|.+..+ .....|+.+ ...+...++..+++..+.+-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46888888888888764 345677777 3555555555556555555443 33332
Q ss_pred -------HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----H
Q 004938 452 -------VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNV----V 520 (722)
Q Consensus 452 -------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~----~ 520 (722)
.....+...+...|++++|.+.|+.+.. + .|+......+...+.+.|++++|+..|++....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~--~-~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV--A-GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC--T-TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c-CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1234456678899999999999998875 2 243326667777899999999999999987433433 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccC--CC-CCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 521 IWGSLMAACRVHGEIELAEFAAKQLLQLD--PD-HDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 521 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
.+..+..++...|++++|+..|+++.... |. .+.....++.++.+.|+.++|..+++++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 67888999999999999999999998543 54 44577899999999999999999999998853
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=2.8e-06 Score=79.23 Aligned_cols=169 Identities=11% Similarity=0.046 Sum_probs=99.8
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004938 394 MYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470 (722)
Q Consensus 394 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 470 (722)
.....|++++|.+.++.-.+ .....|..+...+...|++++|+..|++.... .|+...+... ..+.-
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~~ 82 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLDK 82 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHHH
Confidence 34445555655555543322 23445666677777777777777777777763 2322100000 00000
Q ss_pred HHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004938 471 REIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548 (722)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 548 (722)
. ..+ ....|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...+++++++
T Consensus 83 ~---~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 83 K---KNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp H---HHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred H---HHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 0 000 0245666777777888888888877776 3334 5678888999999999999999999999999
Q ss_pred CCCCCchHHHHHHHhhhCCCcchHH-HHHHHHHhCC
Q 004938 549 DPDHDGALVLLSNIYAKDKRWQDVG-ELRKSMKERG 583 (722)
Q Consensus 549 ~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~g 583 (722)
+|++...+..++.++...|+.+++. ..++.|..++
T Consensus 152 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 152 NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999888888777 5555554443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.4e-06 Score=78.01 Aligned_cols=127 Identities=8% Similarity=0.041 Sum_probs=94.2
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHH-HHhcCCH-
Q 004938 427 AIHGDARNALIFFNKMKDESIDP-NGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL-FGRANLL- 503 (722)
Q Consensus 427 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~- 503 (722)
...|++++|+..|++.... .| +...+..+...+...|++++|...|+.+.+. .+.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcc
Confidence 3457777888888877764 34 4566777777888888888888888887763 23456677777777 7788887
Q ss_pred -HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHH
Q 004938 504 -REALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALV 557 (722)
Q Consensus 504 -~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 557 (722)
++|...++++ ...| +...|..+...+...|++++|...++++++.+|+++....
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 8888888877 3344 4678888899999999999999999999999999865443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.31 E-value=3.1e-06 Score=73.25 Aligned_cols=97 Identities=11% Similarity=-0.026 Sum_probs=76.9
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHh
Q 004938 486 KYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIY 563 (722)
Q Consensus 486 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 563 (722)
+...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4556666777777777777777777765 3333 4677888888888888899999999999988898888888899999
Q ss_pred hhCCCcchHHHHHHHHHhC
Q 004938 564 AKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 564 ~~~g~~~~a~~~~~~m~~~ 582 (722)
...|++++|...+++..+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 9999999998888888764
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.2e-06 Score=75.05 Aligned_cols=92 Identities=8% Similarity=0.026 Sum_probs=62.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCc-------hHHHHH
Q 004938 490 YGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG-------ALVLLS 560 (722)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 560 (722)
+..++..+.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..++++++++|++.. +|..++
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 445666666666677766666665 3344 4566777777777777777777777777777766543 455667
Q ss_pred HHhhhCCCcchHHHHHHHHHh
Q 004938 561 NIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 561 ~~~~~~g~~~~a~~~~~~m~~ 581 (722)
.+|...|++++|.+.+++..+
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 777777777777777776654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.31 E-value=1.7e-06 Score=75.72 Aligned_cols=106 Identities=12% Similarity=-0.005 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 004938 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACR 530 (722)
Q Consensus 453 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 530 (722)
.+..+...+...|++++|...|+.+.. ..+.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 344455566667777777777776665 23345566667777777777777777777766 3334 4567778888899
Q ss_pred HcCCHHHHHHHHHHHHccCCCCCchHHHHH
Q 004938 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLS 560 (722)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 560 (722)
..|++++|...+++++++.|+++.......
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 999999999999999999998876655443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.31 E-value=4.5e-06 Score=77.85 Aligned_cols=151 Identities=11% Similarity=-0.030 Sum_probs=72.8
Q ss_pred hcCCHHHHHH---HHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHH
Q 004938 397 KCGSLESARE---VFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDE----SIDPN-GVTFIGVLYACSHAGLVD 468 (722)
Q Consensus 397 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~ 468 (722)
..|++++|.+ .+..-+.....++..+...|...|++++|+..|++.... +..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3566666666 443322234456666666666677777777766665541 11111 234555555666666666
Q ss_pred HHHHHHHHhHhhcCCCC-C----cchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCH
Q 004938 469 EGREIFASMTNEYNIPP-K----YEHYGCMVDLFGRANLLREALELVETM----PFAPN----VVIWGSLMAACRVHGEI 535 (722)
Q Consensus 469 ~a~~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~ 535 (722)
+|...++...+...-.+ + ...+..+...+...|++++|.+.+++. +..++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 66666665554211111 1 123444445555555555555554443 00011 12234444455555555
Q ss_pred HHHHHHHHHHHc
Q 004938 536 ELAEFAAKQLLQ 547 (722)
Q Consensus 536 ~~a~~~~~~~~~ 547 (722)
++|...++++++
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.31 E-value=6.9e-06 Score=81.95 Aligned_cols=161 Identities=10% Similarity=-0.038 Sum_probs=107.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC--C-Ch------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCC--HHH
Q 004938 388 NNAIIDMYAKCGSLESAREVFERMRR--R-NV------ISWTSMINAFAIHGDARNALIFFNKMKDESI---DPN--GVT 453 (722)
Q Consensus 388 ~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t 453 (722)
+...+..+...|++++|.+.+++..+ + +. ..+..+...+...|++++|+..|++...... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34455666777777777777765432 1 11 2233455556677788888888888765311 111 236
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC-----cchHHHHHHHHHhcCCHHHHHHHHHhC-C------CCCC-HH
Q 004938 454 FIGVLYACSHAGLVDEGREIFASMTNEYNIPPK-----YEHYGCMVDLFGRANLLREALELVETM-P------FAPN-VV 520 (722)
Q Consensus 454 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~------~~p~-~~ 520 (722)
++.+...+...|++++|..+|+.+.+.....|+ ...+..+...|.+.|++++|++.+++. . .... ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 777778888888888888888887732111222 147778888888888888888888765 1 1111 56
Q ss_pred HHHHHHHHHHHcCCHHHH-HHHHHHHHcc
Q 004938 521 IWGSLMAACRVHGEIELA-EFAAKQLLQL 548 (722)
Q Consensus 521 ~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 548 (722)
+|..+...+...|++++| ...+++++++
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 788888889999999999 7778887753
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.2e-06 Score=77.12 Aligned_cols=102 Identities=11% Similarity=0.024 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 004938 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACR 530 (722)
Q Consensus 453 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 530 (722)
.+..+...+...|++++|...|+...+. .+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4555555666666666666666666552 2334455555555555555555555555554 2223 2445555555555
Q ss_pred HcCCHHHHHHHHHHHHccCCCCCchH
Q 004938 531 VHGEIELAEFAAKQLLQLDPDHDGAL 556 (722)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~p~~~~~~ 556 (722)
..|++++|...++++++++|++...+
T Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~~ 116 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEGNGGSDA 116 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSSCCHH
T ss_pred HccCHHHHHHHHHHHHHhCCCchHHH
Confidence 55555555555555555555555433
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.27 E-value=5e-06 Score=70.84 Aligned_cols=109 Identities=11% Similarity=-0.071 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 004938 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACR 530 (722)
Q Consensus 453 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 530 (722)
.+..+...+...|++++|...|+...+ ..+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 344445555566666666666666554 22334556666666666667777776666665 3334 4667888888888
Q ss_pred HcCCHHHHHHHHHHHHccC------CCCCchHHHHHHHh
Q 004938 531 VHGEIELAEFAAKQLLQLD------PDHDGALVLLSNIY 563 (722)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 563 (722)
..|++++|...++++++++ |++......+..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 8999999999999999988 77766666665543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00032 Score=70.38 Aligned_cols=178 Identities=12% Similarity=0.075 Sum_probs=105.9
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCCCCCChh-hHHHHHHHHHccC-CchHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 004938 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKV-TMLSVISACAHLG-VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA 396 (722)
Q Consensus 319 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g-~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~ 396 (722)
+.+-....+.+..++|++++++++.. .|+.. .++.--.++...| .++++..++..+++.+ +.+..+|+.-.-.+.
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 33333344455567888888888875 45443 4555555556666 4788888888877654 445666665555555
Q ss_pred hc-C-CHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004938 397 KC-G-SLESAREVFERMRR---RNVISWTSMINAFAIHGDAR--------NALIFFNKMKDESIDPNGVTFIGVLYACSH 463 (722)
Q Consensus 397 ~~-g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 463 (722)
+. + +++++.++++.+.+ +|..+|+--.-.+.+.|.++ ++++.++++++.. .-|...|+.....+.+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVS 213 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTT
T ss_pred HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 55 5 77788888887775 45566665554444444444 6777777777642 2244456555555555
Q ss_pred cCC-------HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCC
Q 004938 464 AGL-------VDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL 502 (722)
Q Consensus 464 ~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 502 (722)
.+. ++++++.++.++. ..+-|...|+-+-.++.+.|+
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred ccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCC
Confidence 554 5666666666654 234445555555555554443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.27 E-value=1.1e-05 Score=72.14 Aligned_cols=127 Identities=13% Similarity=-0.004 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 004938 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDP-NGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495 (722)
Q Consensus 417 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 495 (722)
..|..+...+...|++++|+..|++.... .| +...+..+..++...|++++|...++...+. .+.+...+..+..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 45666677777788888888888877764 33 4556777777778888888888888887762 3445667777888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH--HHHHHHHcCCHHHHHHHHHHHHc
Q 004938 496 LFGRANLLREALELVETM-PFAP-NVVIWGS--LMAACRVHGEIELAEFAAKQLLQ 547 (722)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~ 547 (722)
.+.+.|++++|.+.+++. ...| +...+.. +...+...|++++|...+++..+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888888888888888776 3333 3444533 33336677888888888887654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=9.8e-05 Score=73.72 Aligned_cols=229 Identities=14% Similarity=0.055 Sum_probs=131.4
Q ss_pred HhcCCch-HHHHHHHHHHhCCCCCChhh-HHHHHHHHHccCC----------chHHHHHHHHHHHcCCCCChhHHHHHHH
Q 004938 326 AENNHPQ-EALKLFNEMQVCGMKPDKVT-MLSVISACAHLGV----------LDQAQRIHLYIDKNAFGGDLRVNNAIID 393 (722)
Q Consensus 326 ~~~g~~~-~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~----------~~~a~~i~~~~~~~~~~~~~~~~~~li~ 393 (722)
.+.|.++ +|++++..++.. .|+..| ++.--..+...+. ++++..++..++... +.+..+|+.-.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4455554 678888887764 455443 3332222222222 456666666666653 445666665555
Q ss_pred HHHhcC--CHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---
Q 004938 394 MYAKCG--SLESAREVFERMRR---RNVISWTSMINAFAIHGD-ARNALIFFNKMKDESIDPNGVTFIGVLYACSHA--- 464 (722)
Q Consensus 394 ~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~--- 464 (722)
.+.+.| .++++..+++.+.+ +|..+|+--.-.+...|. .+++++.++++++.. .-|...|+.....+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 566666 37777777777764 566777776666667776 477888888777742 22344555444444433
Q ss_pred -----------CCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhc-----------CCHHHHHHHHHhC-CCCCCHHH
Q 004938 465 -----------GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRA-----------NLLREALELVETM-PFAPNVVI 521 (722)
Q Consensus 465 -----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~-~~~p~~~~ 521 (722)
+.++++++.+..... -.|-|...|+-+-..+.+. +.++++++.++++ ...||. .
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~ 272 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-K 272 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-H
T ss_pred cccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-c
Confidence 446677777776665 3344555665554444444 3466666666666 445553 3
Q ss_pred HHHHHHHH-----HHcCCHHHHHHHHHHHHccCCCCCchHHHHHH
Q 004938 522 WGSLMAAC-----RVHGEIELAEFAAKQLLQLDPDHDGALVLLSN 561 (722)
Q Consensus 522 ~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 561 (722)
|..+..+. ...|..++....+.++.+++|...+.|..+..
T Consensus 273 w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 273 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 43222221 12455666677777777777766665555443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.26 E-value=6.9e-06 Score=73.81 Aligned_cols=93 Identities=16% Similarity=-0.011 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 004938 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDP-NGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495 (722)
Q Consensus 417 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 495 (722)
..|..+...+...|++++|+..|++.++. .| +...+..+..++...|++++|+..|+...+. .+.+...|..+..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 34455555555555555555555555542 23 2334445555555555555555555555541 2233445555555
Q ss_pred HHHhcCCHHHHHHHHHhC
Q 004938 496 LFGRANLLREALELVETM 513 (722)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~ 513 (722)
+|.+.|++++|.+.|++.
T Consensus 88 ~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHH
Confidence 555555555555555544
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.25 E-value=1.1e-05 Score=79.93 Aligned_cols=190 Identities=9% Similarity=-0.108 Sum_probs=120.3
Q ss_pred hhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHH
Q 004938 350 KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAF 426 (722)
Q Consensus 350 ~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 426 (722)
...+..+...+...|++++|...+..+++.. +.+...+..+...|.+.|++++|...+++..+ .+...|..+..+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3445555566666677777777777666653 33566777888888888888888888888765 4567888888889
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHH
Q 004938 427 AIHGDARNALIFFNKMKDESIDPNGV-TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLRE 505 (722)
Q Consensus 427 ~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 505 (722)
...|++++|+..|++..+. .|+.. .+...+....+ ..++..... ... ...+.+......+...+ .|+.++
T Consensus 83 ~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~---~~~~~~~~~-~~~-~~~~~~~~i~~~l~~l~--~~~~~~ 153 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALR---IAKKKRWNS-IEE-RRIHQESELHSYLTRLI--AAERER 153 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHH---HHHHHHHHH-HHH-TCCCCCCHHHHHHHHHH--HHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHH---HHHHHHHHH-HHH-HHHhhhHHHHHHHHHHH--HHHHHH
Confidence 9999999999999887763 33221 11111111111 111122222 222 24556666655554443 689999
Q ss_pred HHHHHHhC-CCCCCHH-HHHHHHHHHHHc-CCHHHHHHHHHHHHccC
Q 004938 506 ALELVETM-PFAPNVV-IWGSLMAACRVH-GEIELAEFAAKQLLQLD 549 (722)
Q Consensus 506 A~~~~~~~-~~~p~~~-~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~ 549 (722)
|++.+++. ...|+.. ....+...+... +.+++|.++|+++.+..
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 99999877 6677654 334444444444 67888999999887643
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=4.1e-05 Score=76.81 Aligned_cols=214 Identities=14% Similarity=0.104 Sum_probs=156.7
Q ss_pred cCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHhcCC---CChHHHHHHHHHHHHc-C-CHHHHH
Q 004938 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG-SLESAREVFERMRR---RNVISWTSMINAFAIH-G-DARNAL 436 (722)
Q Consensus 363 ~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~ 436 (722)
.+..++|.++...++..+ +.+..+|+.--..+...| .++++.+.++.+.. ++..+|+.-...+... + ++++++
T Consensus 67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 344567888999998875 445667777777777788 59999999998875 5677888887777776 7 899999
Q ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHH--------HHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCC-----
Q 004938 437 IFFNKMKDESIDP-NGVTFIGVLYACSHAGLVD--------EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL----- 502 (722)
Q Consensus 437 ~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----- 502 (722)
++++++.+. .| |...|..-...+.+.|.++ +++++++.+.+ ..+-+...|+....++.+.+.
T Consensus 146 ~~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~--~dp~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 146 EYIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR--VDGRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccccch
Confidence 999999874 44 4556666555555555555 89999999987 345677888888888888876
Q ss_pred --HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHccC------CCC
Q 004938 503 --LREALELVETM-PFAP-NVVIWGSLMAACRVHGEI--------------------ELAEFAAKQLLQLD------PDH 552 (722)
Q Consensus 503 --~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~ 552 (722)
++++++.++++ ...| |...|+-+-..+.+.|+. .........+.... +..
T Consensus 222 ~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 78999999877 4445 678998888777776653 22333333333222 345
Q ss_pred CchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 553 DGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 553 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
+.+...|+++|...|+.++|.++++.+.+
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 55677999999999999999999999864
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=6.3e-06 Score=72.21 Aligned_cols=92 Identities=14% Similarity=-0.028 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhh
Q 004938 490 YGCMVDLFGRANLLREALELVETM-PFAPN----VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564 (722)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 564 (722)
+..+...+.+.|++++|.+.+++. ...|+ ...|..+...+...|++++|...++++++.+|+++..+..++.+|.
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 110 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALE 110 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHH
Confidence 333444444444444444444443 23333 2344444444444455555555555554444444444444444455
Q ss_pred hCCCcchHHHHHHHHHh
Q 004938 565 KDKRWQDVGELRKSMKE 581 (722)
Q Consensus 565 ~~g~~~~a~~~~~~m~~ 581 (722)
..|++++|.+.+++..+
T Consensus 111 ~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 111 KLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555544444433
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=5.5e-06 Score=69.14 Aligned_cols=97 Identities=13% Similarity=0.095 Sum_probs=86.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhh
Q 004938 487 YEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564 (722)
Q Consensus 487 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 564 (722)
...+..++..+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++.+|+++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 346777888999999999999999987 3334 67888999999999999999999999999999999999999999999
Q ss_pred hCCCcchHHHHHHHHHhCC
Q 004938 565 KDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 565 ~~g~~~~a~~~~~~m~~~g 583 (722)
..|++++|.+.++...+..
T Consensus 84 ~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTC
T ss_pred HHhhHHHHHHHHHHHHHcC
Confidence 9999999999999987753
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.21 E-value=6.5e-06 Score=76.71 Aligned_cols=81 Identities=19% Similarity=0.004 Sum_probs=39.3
Q ss_pred cCCHHHHHH---HHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHccCCchH
Q 004938 297 AGQVEDARL---IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC----GMKP-DKVTMLSVISACAHLGVLDQ 368 (722)
Q Consensus 297 ~g~~~~A~~---~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~ 368 (722)
.|++++|.+ .+..-+.....+++.+...+...|++++|+..|++.... +..| ...++..+...+...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 344455544 343322223445666666666667777776666665441 1111 12334444444555555555
Q ss_pred HHHHHHHHH
Q 004938 369 AQRIHLYID 377 (722)
Q Consensus 369 a~~i~~~~~ 377 (722)
|...+....
T Consensus 85 A~~~~~~al 93 (203)
T 3gw4_A 85 ARRCFLEER 93 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.21 E-value=7.4e-06 Score=69.09 Aligned_cols=97 Identities=23% Similarity=0.267 Sum_probs=87.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhh
Q 004938 487 YEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564 (722)
Q Consensus 487 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 564 (722)
...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 456788899999999999999999987 3333 67889999999999999999999999999999999999999999999
Q ss_pred hCCCcchHHHHHHHHHhCC
Q 004938 565 KDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 565 ~~g~~~~a~~~~~~m~~~g 583 (722)
..|++++|...++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999987753
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.21 E-value=4.5e-06 Score=71.53 Aligned_cols=98 Identities=10% Similarity=0.009 Sum_probs=88.7
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHH
Q 004938 485 PKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNI 562 (722)
Q Consensus 485 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 562 (722)
.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++.+|++...+..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34567788899999999999999999987 5555 678899999999999999999999999999999999999999999
Q ss_pred hhhCCCcchHHHHHHHHHhC
Q 004938 563 YAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 563 ~~~~g~~~~a~~~~~~m~~~ 582 (722)
|...|++++|.+.+++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999998764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.5e-05 Score=69.74 Aligned_cols=109 Identities=10% Similarity=-0.037 Sum_probs=68.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 004938 454 FIGVLYACSHAGLVDEGREIFASMTNEYNIPPK----YEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMA 527 (722)
Q Consensus 454 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 527 (722)
+..+...+...|++++|...|+...+ ..|+ ...+..+...|...|++++|++.+++. ...| +...|..+..
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 33344444444444444444444432 1222 344455555555666666666665554 2233 5667888888
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhh
Q 004938 528 ACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAK 565 (722)
Q Consensus 528 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 565 (722)
.+...|++++|...++++++++|++...+..+..+..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 89999999999999999999999988777777666543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.19 E-value=1.5e-05 Score=85.39 Aligned_cols=83 Identities=13% Similarity=0.050 Sum_probs=40.8
Q ss_pred HHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 004938 395 YAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEG 470 (722)
Q Consensus 395 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 470 (722)
|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|++.|++..+. .|+ ...+..+..++...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4445555555555554432 23445555555555555555555555555542 332 23444444455555555555
Q ss_pred HHHHHHhHh
Q 004938 471 REIFASMTN 479 (722)
Q Consensus 471 ~~~~~~~~~ 479 (722)
.+.|+++.+
T Consensus 94 ~~~~~~al~ 102 (477)
T 1wao_1 94 LRDYETVVK 102 (477)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555444
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.17 E-value=4.3e-06 Score=73.13 Aligned_cols=63 Identities=14% Similarity=-0.026 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcc-------CCCCCchH----HHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 520 VIWGSLMAACRVHGEIELAEFAAKQLLQL-------DPDHDGAL----VLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 520 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
..|..+..++...|++++|+..+++++++ +|++...| +..+.++...|++++|...+++..+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 37888888888888888888888888888 99988888 89999999999999999999888763
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.15 E-value=1.1e-05 Score=82.09 Aligned_cols=113 Identities=12% Similarity=0.018 Sum_probs=68.1
Q ss_pred CCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----------------hHHHHHHHHH
Q 004938 364 GVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR--RN----------------VISWTSMINA 425 (722)
Q Consensus 364 g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----------------~~~~~~li~~ 425 (722)
+++++|...+....+.. +.+...+..+...|.+.|++++|...|++..+ |+ ...|..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 44455544444333221 22456788899999999999999999998763 32 3556666666
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 004938 426 FAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTN 479 (722)
Q Consensus 426 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 479 (722)
|.+.|++++|+..|++.++. .|+ ...+..+..++...|++++|...|+.+.+
T Consensus 206 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666666666666666553 332 33455555555555555555555555544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.15 E-value=9.6e-06 Score=70.09 Aligned_cols=100 Identities=9% Similarity=-0.093 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 004938 450 NGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMA 527 (722)
Q Consensus 450 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 527 (722)
+...+..+...+...|++++|...|+..... .+.+...|..+..+|...|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 3445556666666666666666666666552 2334556666677777777777777777665 2334 4677888888
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCC
Q 004938 528 ACRVHGEIELAEFAAKQLLQLDPD 551 (722)
Q Consensus 528 ~~~~~g~~~~a~~~~~~~~~~~p~ 551 (722)
.+...|++++|...+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 888899999999999999988887
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=8.6e-06 Score=68.91 Aligned_cols=98 Identities=10% Similarity=0.071 Sum_probs=67.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 004938 454 FIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRV 531 (722)
Q Consensus 454 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 531 (722)
+..+...+.+.|++++|...|+.+.+ ..+.+...|..+..++.+.|++++|+..+++. ...| +...|..+...+..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34445566677777777777777765 23445666777777777777777777777776 4445 46788888888999
Q ss_pred cCCHHHHHHHHHHHHccCCCCC
Q 004938 532 HGEIELAEFAAKQLLQLDPDHD 553 (722)
Q Consensus 532 ~g~~~~a~~~~~~~~~~~p~~~ 553 (722)
.|++++|+..++++++++|++.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999988764
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.11 E-value=7.2e-06 Score=69.90 Aligned_cols=105 Identities=8% Similarity=-0.045 Sum_probs=57.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC----CCC----HHHHHHHHH
Q 004938 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PF----APN----VVIWGSLMA 527 (722)
Q Consensus 457 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~~ll~ 527 (722)
+...+...|++++|...|+.+.+. .+.+...+..+...|...|++++|...+++. .. .++ ..+|..+..
T Consensus 10 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 87 (131)
T 1elr_A 10 LGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 333344444444444444444331 1223334444444444455555555444443 11 122 556777777
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhh
Q 004938 528 ACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564 (722)
Q Consensus 528 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 564 (722)
.+...|++++|...++++++..| ++.....+..++.
T Consensus 88 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 88888888888888888888887 4555555555443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.11 E-value=7.4e-06 Score=69.96 Aligned_cols=91 Identities=16% Similarity=0.121 Sum_probs=55.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---CchHHHHHHHh
Q 004938 492 CMVDLFGRANLLREALELVETM-PFAPN-V---VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH---DGALVLLSNIY 563 (722)
Q Consensus 492 ~li~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 563 (722)
.+...+.+.|++++|.+.+++. ...|+ . ..|..+...+...|++++|...++++++..|++ +..+..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3444555566666666666554 11222 1 355556666666777777777777777776666 45566667777
Q ss_pred hhCCCcchHHHHHHHHHhC
Q 004938 564 AKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 564 ~~~g~~~~a~~~~~~m~~~ 582 (722)
...|++++|...++.+.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 7777777777777666553
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=3.6e-05 Score=65.39 Aligned_cols=115 Identities=19% Similarity=0.072 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHH
Q 004938 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL 496 (722)
Q Consensus 417 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 496 (722)
..|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...++...+. .+.+...+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHHH
Confidence 445555566666666666666666665531 223445556666666666666666666666652 23345556666666
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 004938 497 FGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGE 534 (722)
Q Consensus 497 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 534 (722)
|.+.|++++|.+.+++. ...| +...+..+...+...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 66667777776666665 2233 44555555555555554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.2e-05 Score=66.36 Aligned_cols=99 Identities=16% Similarity=0.094 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 004938 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP---NVVIWGSLMAA 528 (722)
Q Consensus 453 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~ 528 (722)
.+..+...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3444455555556666666666655542 2334455566666666666666666666665 2233 46677778888
Q ss_pred HHHc-CCHHHHHHHHHHHHccCCCCC
Q 004938 529 CRVH-GEIELAEFAAKQLLQLDPDHD 553 (722)
Q Consensus 529 ~~~~-g~~~~a~~~~~~~~~~~p~~~ 553 (722)
+... |++++|...++++++..|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888 888888888888888888754
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00034 Score=69.83 Aligned_cols=218 Identities=13% Similarity=0.099 Sum_probs=154.7
Q ss_pred HccCCch-HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC----------HHHHHHHHHhcCC---CChHHHHHHHHHH
Q 004938 361 AHLGVLD-QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS----------LESAREVFERMRR---RNVISWTSMINAF 426 (722)
Q Consensus 361 ~~~g~~~-~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~~ 426 (722)
.+.|.++ +|......++..+ +.+..+|+.=-..+...|. ++++..+++.+.. ++..+|+.-.-.+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455554 7888888888764 3344555543333333232 6788888887764 6778898888888
Q ss_pred HHcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhc---
Q 004938 427 AIHGD--ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGL-VDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRA--- 500 (722)
Q Consensus 427 ~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--- 500 (722)
...|+ +++++.+++++.+.. +-|...|+.-...+.+.|. ++++++.++.+++ ..+.+...|+....++.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~--~~p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHHSCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhhhc
Confidence 88884 899999999999852 3355677777777778887 6999999999997 3456777787777766655
Q ss_pred -----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHccCCCCCchH
Q 004938 501 -----------NLLREALELVETM-PFAP-NVVIWGSLMAACRVH-----------GEIELAEFAAKQLLQLDPDHDGAL 556 (722)
Q Consensus 501 -----------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~ 556 (722)
+.++++++.+++. ...| |...|+-+-..+... +.++++++.++++++++|++.-.+
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l 275 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCL 275 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHH
Confidence 5688999999887 3445 678888666665554 458999999999999999985443
Q ss_pred HHHHHH---hhhCCCcchHHHHHHHHHhC
Q 004938 557 VLLSNI---YAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 557 ~~l~~~---~~~~g~~~~a~~~~~~m~~~ 582 (722)
..++.+ ....|..++....+.++++.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 333322 22457777888888888764
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.07 E-value=1.7e-05 Score=84.47 Aligned_cols=144 Identities=14% Similarity=0.070 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 004938 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495 (722)
Q Consensus 416 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 495 (722)
...|..+...|.+.|++++|+..|++.++. .|+...+ . -++..+ .... ....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~~~~--------~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-SESF--------LLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-HHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-HHHH--------HHHHHHHHHH
Confidence 456777777788888888888888877762 3332100 0 000000 0000 1246677788
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHH
Q 004938 496 LFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVG 573 (722)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 573 (722)
+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|+..|+++++++|++..++..++.++...|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888776 3344 57789999999999999999999999999999999999999999999999999887
Q ss_pred H-HHHHHHh
Q 004938 574 E-LRKSMKE 581 (722)
Q Consensus 574 ~-~~~~m~~ 581 (722)
+ .++.|..
T Consensus 406 ~~~~~~~f~ 414 (457)
T 1kt0_A 406 RRIYANMFK 414 (457)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHh
Confidence 4 4555543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.06 E-value=3.3e-05 Score=65.76 Aligned_cols=101 Identities=15% Similarity=0.083 Sum_probs=63.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhhcCCCCCc---chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 004938 458 LYACSHAGLVDEGREIFASMTNEYNIPPKY---EHYGCMVDLFGRANLLREALELVETM-PFAPN----VVIWGSLMAAC 529 (722)
Q Consensus 458 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~ 529 (722)
...+...|++++|...|+.+.+. .+.+. ..+..+...|.+.|++++|.+.+++. ...|+ ...+..+...+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 34445556666666666655542 11222 34555666666666666666666655 22232 45677778888
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCCchHHHHH
Q 004938 530 RVHGEIELAEFAAKQLLQLDPDHDGALVLLS 560 (722)
Q Consensus 530 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 560 (722)
...|++++|...++++++..|+++.......
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 8899999999999999999998765544433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.06 E-value=2.1e-05 Score=70.42 Aligned_cols=64 Identities=13% Similarity=0.162 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 519 VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 519 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
...|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3577778888888888888888888888888888888888888888888888888888887664
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00015 Score=79.05 Aligned_cols=168 Identities=11% Similarity=0.048 Sum_probs=134.8
Q ss_pred CHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 004938 400 SLESAREVFERMRR---RNVISWTSMINAFAIHGD----------ARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAG 465 (722)
Q Consensus 400 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g 465 (722)
..++|.+.++.+.+ .+...|+.--..+...|+ ++++++.++++.+. .|. ..+|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence 34567777777764 345677776666666666 89999999999884 554 457777777888888
Q ss_pred --CHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc--------
Q 004938 466 --LVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRAN-LLREALELVETM-PFAP-NVVIWGSLMAACRVH-------- 532 (722)
Q Consensus 466 --~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-------- 532 (722)
+++++++.++.+.+ ..+-+...|+.-..++.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~--~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHh--hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 77999999999998 34566778888888888888 899999999888 5555 678898888877663
Q ss_pred ------CCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcch
Q 004938 533 ------GEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQD 571 (722)
Q Consensus 533 ------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 571 (722)
+.++++.+.+.++++.+|++..+|..+..++.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 568999999999999999999999999999999988655
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.04 E-value=2.8e-06 Score=71.42 Aligned_cols=83 Identities=18% Similarity=0.144 Sum_probs=54.1
Q ss_pred cCCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHH
Q 004938 500 ANLLREALELVETM-PF---APN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGE 574 (722)
Q Consensus 500 ~g~~~~A~~~~~~~-~~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 574 (722)
.|++++|+..|++. .. .|+ ...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45566666666555 33 232 35666677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhC
Q 004938 575 LRKSMKER 582 (722)
Q Consensus 575 ~~~~m~~~ 582 (722)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77766553
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=6.5e-06 Score=76.67 Aligned_cols=145 Identities=12% Similarity=0.030 Sum_probs=81.1
Q ss_pred HHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCh----------------HH
Q 004938 358 SACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNV----------------IS 418 (722)
Q Consensus 358 ~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~----------------~~ 418 (722)
......|+++.+.+.+....+.. ......+..+...+.+.|++++|...|++..+ .+. ..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp ----------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 34445666777666665332211 11345567788889999999999999998753 222 56
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHH
Q 004938 419 WTSMINAFAIHGDARNALIFFNKMKDESIDP-NGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLF 497 (722)
Q Consensus 419 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 497 (722)
|..+..+|...|++++|+..+++.... .| +...+..+..++...|++++|...|+...+. .+.+...+..+..++
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHH
Confidence 666666677777777777777776663 33 3445666666666666666666666666542 222344444444444
Q ss_pred HhcCCHHHHH
Q 004938 498 GRANLLREAL 507 (722)
Q Consensus 498 ~~~g~~~~A~ 507 (722)
.+.|+.+++.
T Consensus 167 ~~~~~~~~~~ 176 (198)
T 2fbn_A 167 NKLKEARKKD 176 (198)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 4444444433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.1e-05 Score=69.03 Aligned_cols=106 Identities=14% Similarity=0.052 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 004938 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495 (722)
Q Consensus 417 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 495 (722)
..|..+...+.+.|++++|+..|++.++ +.|+ ...|..+..++...|++++|++.++...+.. +.+...+..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~-- 82 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG--RETRADYKLI-- 82 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCHHHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC--cccchhhHHH--
Confidence 3455555666666666666666666555 2343 3345555555555566666655555554310 0001111111
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004938 496 LFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551 (722)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 551 (722)
..+|..+...+...|++++|+..|+++++..|+
T Consensus 83 -----------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 83 -----------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp -----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred -----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 235667778888999999999999999998885
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.01 E-value=3.2e-05 Score=81.82 Aligned_cols=163 Identities=7% Similarity=-0.072 Sum_probs=101.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHhHhhc---CCCC-Ccch
Q 004938 419 WTSMINAFAIHGDARNALIFFNKMKDE-SIDPNGV----TFIGVLYACSHAGLVDEGREIFASMTNEY---NIPP-KYEH 489 (722)
Q Consensus 419 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~ 489 (722)
+..+...|...|++++|.+.+.++... +..++.. +.+.+-..+...|..+++..++....... +..+ ....
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 455666677777777777777665541 1112211 12222233345677777777776655321 1111 1345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-----C--CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC---C----Cc
Q 004938 490 YGCMVDLFGRANLLREALELVETM-----P--FAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD---H----DG 554 (722)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~~-----~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~----~~ 554 (722)
+..++..|...|++++|..++++. + .+|. ..++..++..|...|++++|...+++++...|. + ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 667778888888888888887765 1 1222 356777888888888899888888888765322 2 13
Q ss_pred hHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 555 ALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 555 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
.+..++.++...|++++|...+....+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455677788888888888887766643
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.1e-05 Score=72.25 Aligned_cols=76 Identities=18% Similarity=0.027 Sum_probs=60.6
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCC-chHHHHHHH
Q 004938 487 YEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD-GALVLLSNI 562 (722)
Q Consensus 487 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 562 (722)
...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++++++|+++ .....+..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 356777888888888888888888776 4445 567889999999999999999999999999999987 444444443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.98 E-value=1.6e-05 Score=67.68 Aligned_cols=95 Identities=12% Similarity=0.124 Sum_probs=84.2
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-------CchHHH
Q 004938 488 EHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH-------DGALVL 558 (722)
Q Consensus 488 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~ 558 (722)
..+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++++..|++ ...+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45777888999999999999999987 3333 67888899999999999999999999999998876 778889
Q ss_pred HHHHhhhCCCcchHHHHHHHHHhC
Q 004938 559 LSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 559 l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
++.+|...|++++|.+.++...+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999998774
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.6e-05 Score=81.02 Aligned_cols=147 Identities=10% Similarity=-0.034 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHH
Q 004938 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL 496 (722)
Q Consensus 417 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 496 (722)
..|..+...+.+.|++++|+..|++.+. +.|+... +...|..+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 3466667777788888888888888776 3555432 223344444332221 1357778888
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHh-hhCCCcchHH
Q 004938 497 FGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIY-AKDKRWQDVG 573 (722)
Q Consensus 497 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a~ 573 (722)
|.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|++..++..|..+. ...+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888776 3344 5678888888888888999999999999888888888888888774 4556777788
Q ss_pred HHHHHHHhCC
Q 004938 574 ELRKSMKERG 583 (722)
Q Consensus 574 ~~~~~m~~~g 583 (722)
+.++.|.+..
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 8888776543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.95 E-value=2.4e-05 Score=80.67 Aligned_cols=139 Identities=13% Similarity=0.005 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 004938 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495 (722)
Q Consensus 416 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 495 (722)
...|..+...+.+.|++++|+..|++.++. .|+.. .....+++.. ..+.+...|..+..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~~~---------~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADGAK---------LQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHHGG---------GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHHHH---------HHHHHHHHHHHHHH
Confidence 345777778888888888888888887652 11100 0001111110 01123457788888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHH
Q 004938 496 LFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVG 573 (722)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 573 (722)
+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++...+..++.++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999887 5556 46788899999999999999999999999999999999999999998888887766
Q ss_pred HH
Q 004938 574 EL 575 (722)
Q Consensus 574 ~~ 575 (722)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 43
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.94 E-value=3.2e-05 Score=68.53 Aligned_cols=136 Identities=13% Similarity=0.042 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHH
Q 004938 417 ISWTSMINAFAIHGDARNALIFFNKMKDESI-DPNG----VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG 491 (722)
Q Consensus 417 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 491 (722)
.++..+...|...|++++|+..+++..+... .++. .++..+...+...|++++|..+++...+...
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~--------- 80 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR--------- 80 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---------
Confidence 3556666666677777777777766554210 0111 2344444455555555555555554433100
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC------CCchHHHHHHHhh
Q 004938 492 CMVDLFGRANLLREALELVETMPFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD------HDGALVLLSNIYA 564 (722)
Q Consensus 492 ~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~ 564 (722)
..+..+ ....+..+...+...|++++|...++++++..+. ....+..++.+|.
T Consensus 81 --------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 140 (164)
T 3ro3_A 81 --------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 140 (164)
T ss_dssp --------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --------------------HhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Confidence 000000 1234556666677777777777777777654321 1235667777888
Q ss_pred hCCCcchHHHHHHHHHh
Q 004938 565 KDKRWQDVGELRKSMKE 581 (722)
Q Consensus 565 ~~g~~~~a~~~~~~m~~ 581 (722)
..|++++|.+.+++..+
T Consensus 141 ~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 141 ALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 88888888877776654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.93 E-value=1.7e-05 Score=69.40 Aligned_cols=71 Identities=14% Similarity=0.094 Sum_probs=51.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCH-HHH----HHHHHHHHHcCCHHHHHHHHHHHHccCCCCCch
Q 004938 489 HYGCMVDLFGRANLLREALELVETM--------PFAPNV-VIW----GSLMAACRVHGEIELAEFAAKQLLQLDPDHDGA 555 (722)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 555 (722)
.|..+..++.+.|++++|+..+++. .+.|+. ..| .....++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 4445555555555555555554443 347864 688 899999999999999999999999999998765
Q ss_pred HHHH
Q 004938 556 LVLL 559 (722)
Q Consensus 556 ~~~l 559 (722)
+..+
T Consensus 139 ~~~~ 142 (159)
T 2hr2_A 139 TPGK 142 (159)
T ss_dssp CTTH
T ss_pred HHHH
Confidence 4433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.92 E-value=6.5e-05 Score=79.90 Aligned_cols=123 Identities=11% Similarity=0.043 Sum_probs=87.6
Q ss_pred HHhcCCHHHHHHHHHHhHhhc--CCCC----CcchHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-HHHHH
Q 004938 461 CSHAGLVDEGREIFASMTNEY--NIPP----KYEHYGCMVDLFGRANLLREALELVETM---------PFAPNV-VIWGS 524 (722)
Q Consensus 461 ~~~~g~~~~a~~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ 524 (722)
+...|++++|..++++..+.. -+.| ...+++.|..+|...|++++|+.++++. +..|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345566666666655554321 1111 1345666777777777777777776654 344554 67899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHc-----cCCCCCchH---HHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 525 LMAACRVHGEIELAEFAAKQLLQ-----LDPDHDGAL---VLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 525 ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~---~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
|...|...|++++|+.+++++++ ++|+++.+- ..+..++...|++++|+.++..+++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999986 578876543 477888889999999999999998754
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.87 E-value=5.7e-05 Score=66.88 Aligned_cols=136 Identities=13% Similarity=0.031 Sum_probs=92.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----
Q 004938 385 LRVNNAIIDMYAKCGSLESAREVFERMRR-----RNV----ISWTSMINAFAIHGDARNALIFFNKMKDESI-DPN---- 450 (722)
Q Consensus 385 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~---- 450 (722)
..++..+...|...|++++|...+++..+ .+. .++..+...|...|++++|+..+++..+..- .++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 34678888999999999999999988764 221 4788889999999999999999999776210 111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 004938 451 GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP-NVVIWGSLMAAC 529 (722)
Q Consensus 451 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~ 529 (722)
...+..+...+...|++++|.+.++...+. .++.+..+ ....+..+...+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----------------------------~~~~~~~~~~~~~~~~la~~~ 139 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAI-----------------------------AQELKDRIGEGRACWSLGNAY 139 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----------------------------HHHccchHhHHHHHHHHHHHH
Confidence 234556666777777777777777665541 01111001 123456666677
Q ss_pred HHcCCHHHHHHHHHHHHccC
Q 004938 530 RVHGEIELAEFAAKQLLQLD 549 (722)
Q Consensus 530 ~~~g~~~~a~~~~~~~~~~~ 549 (722)
...|++++|...+++++++.
T Consensus 140 ~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 140 TALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHTCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHH
Confidence 77788888888777776643
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00025 Score=74.84 Aligned_cols=161 Identities=11% Similarity=0.026 Sum_probs=95.6
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHcC-CCCCh----hHHHHHHHHHHhcCCHHHHHHHHHhcCC-----C----ChHH
Q 004938 353 MLSVISACAHLGVLDQAQRIHLYIDKNA-FGGDL----RVNNAIIDMYAKCGSLESAREVFERMRR-----R----NVIS 418 (722)
Q Consensus 353 ~~~ll~~~~~~g~~~~a~~i~~~~~~~~-~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~----~~~~ 418 (722)
+..+...|...|++++|.+.+..+.+.- ..++. .+.+.+...+...|+.+.|.++++.... . -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4445555555666666655555544321 00111 1222233334445666777666665432 1 1246
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcC-C--CCC--cc
Q 004938 419 WTSMINAFAIHGDARNALIFFNKMKDE--SI--DPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYN-I--PPK--YE 488 (722)
Q Consensus 419 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~--~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~--~~~--~~ 488 (722)
+..+...|...|++++|..++++.... +. +|. ..++..++..|...|++++|..+++....... + ++. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 677778888888888888888876542 11 222 23577777888888888888888887664221 1 111 24
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC
Q 004938 489 HYGCMVDLFGRANLLREALELVETM 513 (722)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~~ 513 (722)
.+..++..+...|++++|...+.+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5667777788888988888777654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.84 E-value=1.1e-05 Score=67.75 Aligned_cols=93 Identities=12% Similarity=0.023 Sum_probs=59.0
Q ss_pred cCCHHHHHHHHHHhHhhcC--CCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 004938 464 AGLVDEGREIFASMTNEYN--IPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAE 539 (722)
Q Consensus 464 ~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 539 (722)
.|++++|+..|+...+. + .+.+...+..+..+|.+.|++++|++.+++. ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 34555555555555541 1 1223445566666666666777776666665 2334 4667778888888899999999
Q ss_pred HHHHHHHccCCCCCchHH
Q 004938 540 FAAKQLLQLDPDHDGALV 557 (722)
Q Consensus 540 ~~~~~~~~~~p~~~~~~~ 557 (722)
..++++++..|+++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999988888765433
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.81 E-value=3.3e-05 Score=63.69 Aligned_cols=91 Identities=18% Similarity=0.018 Sum_probs=73.5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------CchHHH
Q 004938 487 YEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH------DGALVL 558 (722)
Q Consensus 487 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~ 558 (722)
...+..+...+.+.|++++|++.+++. ...| +...|..+...+...|++++|+..++++++++|++ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 445667777888888888888888776 3344 57788899999999999999999999999999998 667778
Q ss_pred HHHHhhhCCCcchHHHHHH
Q 004938 559 LSNIYAKDKRWQDVGELRK 577 (722)
Q Consensus 559 l~~~~~~~g~~~~a~~~~~ 577 (722)
++.++...|++++|.+.++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHH
Confidence 8888888888777665443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.79 E-value=2.6e-05 Score=79.46 Aligned_cols=114 Identities=8% Similarity=-0.108 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 004938 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH 532 (722)
Q Consensus 453 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 532 (722)
.+..+...+.+.|++++|...|+.+... .|+.. .+...|+.+++...+. ...|..+...+...
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~-------~~~~~~~~~~~~~~l~-------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDF-------MFQLYGKYQDMALAVK-------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHH-------HHTCCHHHHHHHHHHH-------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccch-------hhhhcccHHHHHHHHH-------HHHHHHHHHHHHHc
Confidence 3555667778889999999999887762 23211 1334455555554442 13788888999999
Q ss_pred CCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 533 GEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 533 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
|++++|+..++++++++|++..++..++.+|...|++++|...+++..+..
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~ 294 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999886643
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.76 E-value=8.8e-05 Score=60.05 Aligned_cols=65 Identities=20% Similarity=0.152 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 518 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
+...|..+...+...|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 57789999999999999999999999999999999999999999999999999999999988764
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00014 Score=57.25 Aligned_cols=80 Identities=24% Similarity=0.270 Sum_probs=61.7
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhh
Q 004938 488 EHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAK 565 (722)
Q Consensus 488 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 565 (722)
..+..+...+.+.|++++|++.+++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.++..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 45556666777777777777777665 2233 567788888889999999999999999999999998888888888765
Q ss_pred CC
Q 004938 566 DK 567 (722)
Q Consensus 566 ~g 567 (722)
.|
T Consensus 90 ~g 91 (91)
T 1na3_A 90 QG 91 (91)
T ss_dssp HC
T ss_pred cC
Confidence 44
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.68 E-value=8.2e-05 Score=61.95 Aligned_cols=78 Identities=17% Similarity=0.107 Sum_probs=63.2
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 505 EALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 505 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
+|++.+++. ...| +...|..+...+...|++++|+..++++++++|++...+..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555554 3344 56788888888889999999999999999999998888999999999999999999998887663
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00016 Score=74.53 Aligned_cols=112 Identities=11% Similarity=-0.022 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 004938 452 VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP-NVVIWGSLMAACR 530 (722)
Q Consensus 452 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~ 530 (722)
..+..+...+.+.|++++|.+.|+.+.+.. + . .......+++. ...| +..+|..+...+.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~------~----~~~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---E------G----SRAAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---H------H----HHHHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---h------c----CccccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 456677777788888888888887776510 0 0 00001111111 1223 3568888999999
Q ss_pred HcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
..|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998774
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=2e-05 Score=68.80 Aligned_cols=86 Identities=15% Similarity=0.120 Sum_probs=65.8
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHccCCCCCchHHHHHHHhhh
Q 004938 498 GRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGE----------IELAEFAAKQLLQLDPDHDGALVLLSNIYAK 565 (722)
Q Consensus 498 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 565 (722)
.|.+++++|++.+++. ...| +...|..+..++...++ +++|+..|+++++++|++..+|+.++++|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3445566666666655 3334 45566666666655544 5799999999999999999999999999998
Q ss_pred CC-----------CcchHHHHHHHHHhCC
Q 004938 566 DK-----------RWQDVGELRKSMKERG 583 (722)
Q Consensus 566 ~g-----------~~~~a~~~~~~m~~~g 583 (722)
.| ++++|.+.|++..+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 75 8999999999998854
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00032 Score=74.58 Aligned_cols=120 Identities=10% Similarity=-0.002 Sum_probs=72.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004938 384 DLRVNNAIIDMYAKCGSLESAREVFERMRR--R-N---------------VISWTSMINAFAIHGDARNALIFFNKMKDE 445 (722)
Q Consensus 384 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 445 (722)
....+..+...|.+.|++++|...|++..+ | + ...|..+..+|.+.|++++|+..|++.++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 355678889999999999999999998764 2 2 355666666666666666666666666653
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHH
Q 004938 446 SIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507 (722)
Q Consensus 446 g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 507 (722)
.|+ ...|..+..++...|++++|...|+.+.+ ..+.+...+..+..++.+.|+.++|.
T Consensus 347 --~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 --DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp --STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHHHHHHHHHHHHH
T ss_pred --CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333 34555555566666666666666665554 22223344444444444444444443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00047 Score=75.15 Aligned_cols=150 Identities=12% Similarity=0.011 Sum_probs=124.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCC----------HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHH
Q 004938 430 GDARNALIFFNKMKDESIDPNGV-TFIGVLYACSHAGL----------VDEGREIFASMTNEYNIPPKYEHYGCMVDLFG 498 (722)
Q Consensus 430 g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 498 (722)
...++|++.+++++. +.|+.. .|+.--.++.+.|. ++++++.++.+.+ ..+.+...|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 346788999999998 577765 46665566666666 9999999999997 45667888998888999
Q ss_pred hcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHccCCCCCchHHHHHHHhhhC-------
Q 004938 499 RAN--LLREALELVETM-PFAP-NVVIWGSLMAACRVHG-EIELAEFAAKQLLQLDPDHDGALVLLSNIYAKD------- 566 (722)
Q Consensus 499 ~~g--~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 566 (722)
+.| ++++++++++++ ...| +...|+.-.......| ..+++.+.++++++.+|++..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 789999999998 4444 6789999988888988 899999999999999999999999988888764
Q ss_pred -------CCcchHHHHHHHHHhCC
Q 004938 567 -------KRWQDVGELRKSMKERG 583 (722)
Q Consensus 567 -------g~~~~a~~~~~~m~~~g 583 (722)
+.++++.+.+++..+..
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~ 222 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTD 222 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred ccccccHHHHHHHHHHHHHHHhhC
Confidence 56788888888776543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00011 Score=78.05 Aligned_cols=115 Identities=10% Similarity=-0.020 Sum_probs=89.3
Q ss_pred HHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHc-----cCCCCC---chHH
Q 004938 496 LFGRANLLREALELVETM---------PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQ-----LDPDHD---GALV 557 (722)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~ 557 (722)
.+..+|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ ++|+++ ..+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999988765 23344 36889999999999999999999999986 356665 4677
Q ss_pred HHHHHhhhCCCcchHHHHHHHHHhCCCccCCcccEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhh
Q 004938 558 LLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKP 628 (722)
Q Consensus 558 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~ 628 (722)
.|+.+|..+|++++|..++++..+--.. . -...||.+.++...+.+...++..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~-~-----------------lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV-T-----------------HGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH-H-----------------TCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH-H-----------------hCCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988753111 0 124699999888877777766543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.55 E-value=6.7e-05 Score=65.44 Aligned_cols=74 Identities=19% Similarity=0.158 Sum_probs=48.1
Q ss_pred HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCc
Q 004938 503 LREALELVETM-PFAPN-VVIWGSLMAACRVH-----------GEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRW 569 (722)
Q Consensus 503 ~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 569 (722)
+++|+..|++. .+.|+ ...|..+..+|... |++++|+..|+++++++|++..+...+- ..
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~-------~~ 134 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE-------MT 134 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-------HH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH-------HH
Confidence 34666666665 44553 45677777777665 5899999999999999999864333322 23
Q ss_pred chHHHHHHHHHhCC
Q 004938 570 QDVGELRKSMKERG 583 (722)
Q Consensus 570 ~~a~~~~~~m~~~g 583 (722)
++|.++.-.+...+
T Consensus 135 ~ka~el~~~~~~~~ 148 (158)
T 1zu2_A 135 AKAPQLHAEAYKQG 148 (158)
T ss_dssp HTHHHHHHHHHHSS
T ss_pred HhCHhccCcccccc
Confidence 45566555555443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0003 Score=73.60 Aligned_cols=113 Identities=12% Similarity=0.135 Sum_probs=80.8
Q ss_pred HHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHc-----cCCCCC---chHHH
Q 004938 497 FGRANLLREALELVETM---------PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQ-----LDPDHD---GALVL 558 (722)
Q Consensus 497 ~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~ 558 (722)
+.+.|++++|++++++. +..|+ ..+++.|..+|...|++++|+.+++++++ +.|+++ ..+..
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44555666666665543 11222 35788888889899999999999988886 345554 46778
Q ss_pred HHHHhhhCCCcchHHHHHHHHHhCCCccCCcccEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHh
Q 004938 559 LSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELK 627 (722)
Q Consensus 559 l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~ 627 (722)
|+.+|...|++++|..++++..+--. +. -...||.+.+++..+.+...+|+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~-~~-----------------lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMR-VT-----------------HGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH-HH-----------------TCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHH-Hh-----------------cCCCChHHHHHHHHHHHHHHHHh
Confidence 99999999999999999988865211 10 12469999999888888887775
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00039 Score=56.98 Aligned_cols=67 Identities=9% Similarity=-0.069 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 517 PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 517 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
++...|..+...+...|++++|...++++++++|+++..+..++.+|...|++++|.+.+++..+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3566788899999999999999999999999999999999999999999999999999999988753
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00065 Score=53.78 Aligned_cols=69 Identities=17% Similarity=0.126 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCC
Q 004938 516 APNVVIWGSLMAACRVHGE---IELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGI 584 (722)
Q Consensus 516 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 584 (722)
.+|+..|..+..++...++ .++|..+++++++++|+++.+...++..+...|++++|...++.+.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3467788888888765554 79999999999999999999999999999999999999999999988654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0014 Score=56.56 Aligned_cols=89 Identities=7% Similarity=-0.120 Sum_probs=51.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhh---
Q 004938 493 MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRV----HGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAK--- 565 (722)
Q Consensus 493 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 565 (722)
|..+|...+.+++|.+.|++.-...+...+..|...|.. .+++++|...++++.+. .++..+..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 444444444555555555544212345555555555555 56666666666666655 345566666666666
Q ss_pred -CCCcchHHHHHHHHHhCC
Q 004938 566 -DKRWQDVGELRKSMKERG 583 (722)
Q Consensus 566 -~g~~~~a~~~~~~m~~~g 583 (722)
.+++++|.+.+++..+.|
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 666777777766666655
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00017 Score=75.38 Aligned_cols=81 Identities=14% Similarity=0.023 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHc-----cCCCCC---chHHHHHHH
Q 004938 501 NLLREALELVETM---------PFAPNV-VIWGSLMAACRVHGEIELAEFAAKQLLQ-----LDPDHD---GALVLLSNI 562 (722)
Q Consensus 501 g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~~ 562 (722)
|++++|+.++++. +..|+. .+++.|..+|...|++++|+.+++++++ ++|+++ ..+..|+.+
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 5556666555543 223433 5788888888888888888888888876 355554 457788999
Q ss_pred hhhCCCcchHHHHHHHHHh
Q 004938 563 YAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 563 ~~~~g~~~~a~~~~~~m~~ 581 (722)
|..+|++++|..++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 9999999999999888765
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00078 Score=55.82 Aligned_cols=81 Identities=16% Similarity=0.089 Sum_probs=55.7
Q ss_pred HHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004938 470 GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQ 547 (722)
Q Consensus 470 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 547 (722)
+.+.|+.+.+ ..+.+...+..+...|.+.|++++|+..+++. ...| +...|..+...+...|++++|...++++++
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555554 23344566666777777777777777777665 3334 466788888888888888888888888888
Q ss_pred cCCCC
Q 004938 548 LDPDH 552 (722)
Q Consensus 548 ~~p~~ 552 (722)
+.|+.
T Consensus 82 ~~~~~ 86 (115)
T 2kat_A 82 AAQSR 86 (115)
T ss_dssp HHHHH
T ss_pred hcccc
Confidence 87753
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00098 Score=52.16 Aligned_cols=64 Identities=25% Similarity=0.277 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 519 VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 519 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
...|..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4678888889999999999999999999999999999999999999999999999999998774
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0093 Score=59.67 Aligned_cols=138 Identities=12% Similarity=-0.001 Sum_probs=73.9
Q ss_pred CChHHHHHHHHHHH--HcCC---HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHh---cC-----CHHHHHHHHHHhHh
Q 004938 414 RNVISWTSMINAFA--IHGD---ARNALIFFNKMKDESIDPNGV-TFIGVLYACSH---AG-----LVDEGREIFASMTN 479 (722)
Q Consensus 414 ~~~~~~~~li~~~~--~~g~---~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~---~g-----~~~~a~~~~~~~~~ 479 (722)
.+...|...+.+.. ..++ ..+|+.+|++.++ ..|+.. .+..+..++.. .+ ......+.+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 46667777766543 2333 4788999999888 578743 34433333321 00 01111111111111
Q ss_pred hcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCC
Q 004938 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD 553 (722)
Q Consensus 480 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 553 (722)
....+.+...|..+.-.+...|++++|...++++ ...|+...|..+...+...|+.++|.+.+++++.++|..+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 0122344555555555555556666666666665 3345655565555566666666666666666666666543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0022 Score=55.25 Aligned_cols=113 Identities=10% Similarity=-0.040 Sum_probs=91.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh----cCCHH
Q 004938 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR----ANLLR 504 (722)
Q Consensus 429 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~ 504 (722)
.++.++|++.|++..+.| .|+.. +...+...+.+++|.++|+...+. -+...+..|..+|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 346789999999998877 44433 666677778889999999998873 456778888888887 88999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCC
Q 004938 505 EALELVETMPFAPNVVIWGSLMAACRV----HGEIELAEFAAKQLLQLDP 550 (722)
Q Consensus 505 ~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 550 (722)
+|.+.+++.-..-+...+..|...|.. .++.++|...++++.+.+.
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999988333577888888888888 8999999999999988754
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0033 Score=65.64 Aligned_cols=69 Identities=16% Similarity=0.048 Sum_probs=49.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHc-----cCCCC
Q 004938 488 EHYGCMVDLFGRANLLREALELVETM---------PFAPNV-VIWGSLMAACRVHGEIELAEFAAKQLLQ-----LDPDH 552 (722)
Q Consensus 488 ~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~ 552 (722)
.+++.|..+|...|++++|+.++++. +..|+. .+++.|...|...|++++|+.+++++++ ++|++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~H 420 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH 420 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 44556666666666666666666554 345554 5788999999999999999999999986 47887
Q ss_pred CchH
Q 004938 553 DGAL 556 (722)
Q Consensus 553 ~~~~ 556 (722)
+.+-
T Consensus 421 p~~~ 424 (433)
T 3qww_A 421 PYIS 424 (433)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 6443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0061 Score=63.67 Aligned_cols=69 Identities=17% Similarity=0.007 Sum_probs=48.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHc-----cCCCCC
Q 004938 489 HYGCMVDLFGRANLLREALELVETM---------PFAPNV-VIWGSLMAACRVHGEIELAEFAAKQLLQ-----LDPDHD 553 (722)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~ 553 (722)
+++.|..+|...|++++|+.++++. +..|+. .+++.|...|...|++++|+.+++++++ ++|+++
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp 410 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHS 410 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 4555556666666666666665544 344554 5788899999999999999999999886 478887
Q ss_pred chHH
Q 004938 554 GALV 557 (722)
Q Consensus 554 ~~~~ 557 (722)
.+-.
T Consensus 411 ~~~~ 414 (429)
T 3qwp_A 411 LIED 414 (429)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0046 Score=49.24 Aligned_cols=64 Identities=17% Similarity=0.178 Sum_probs=51.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchH
Q 004938 493 MVDLFGRANLLREALELVETM-PFAP-NVV-IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL 556 (722)
Q Consensus 493 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 556 (722)
....+.+.|++++|.+.+++. ...| +.. .|..+...+...|++++|...++++++++|++...+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 456677788888888888876 3344 456 888888889999999999999999999999988766
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00022 Score=72.54 Aligned_cols=252 Identities=14% Similarity=0.182 Sum_probs=159.4
Q ss_pred hHHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 004938 67 LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKL 146 (722)
Q Consensus 67 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 146 (722)
++.|...-++...|. .|..|..+....++..+|++-|-+. -|+..|..++.++.+.|.+++-...+....+.
T Consensus 41 ldRa~eyA~~~n~p~--VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~ 112 (624)
T 3lvg_A 41 LDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 112 (624)
T ss_dssp STTTTTSSSSCCCCC--CSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT
T ss_pred cHHHHHHHHHhCCcc--HHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 333433333343343 4888888888888888887766332 26667888888888888888888777766554
Q ss_pred CCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHC--------------
Q 004938 147 GFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS-------------- 212 (722)
Q Consensus 147 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------------- 212 (722)
..++.+-+.|+-+|++.+++.+-.+.+ ..||+..-..+.+-+...|.++.|.-+|..+...
T Consensus 113 --~ke~~IDteLi~ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq 187 (624)
T 3lvg_A 113 --ARESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQ 187 (624)
T ss_dssp --CCSTTTTHHHHHHHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGG
T ss_pred --hcccccHHHHHHHHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 345566678888888888765543322 2345555555555555555555555554443211
Q ss_pred ------CCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhccc---CC
Q 004938 213 ------NVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL---KN 283 (722)
Q Consensus 213 ------g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~ 283 (722)
.-.-+..||-.+-.+|...+.+..|...--.++-. +.-...|+..|-..|.+++-..+++.... ..
T Consensus 188 ~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglErAH 262 (624)
T 3lvg_A 188 AAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLERAH 262 (624)
T ss_dssp SSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCC
T ss_pred HHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchh
Confidence 11236678999999999999888776544333322 11233467778888998888888887752 35
Q ss_pred chHHHHHHHHHHhcC--CHHHHHHHHhc-cCCC-------CcchHHHHHHHHHhcCCchHHHH
Q 004938 284 LVVSTAMVSGYSRAG--QVEDARLIFDQ-MVEK-------DLICWSAMISGYAENNHPQEALK 336 (722)
Q Consensus 284 ~~~~~~li~~~~~~g--~~~~A~~~f~~-~~~~-------~~~~~~~li~~~~~~g~~~~A~~ 336 (722)
...++.|.-.|+|-. ++-+=+++|.. +.-+ ....|.-++-.|.+-.+++.|..
T Consensus 263 mGmFTELaILYsKY~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 263 MGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHHHHSSCTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 678888888888763 22222223322 2111 45679999999999888887754
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0033 Score=50.16 Aligned_cols=59 Identities=29% Similarity=0.303 Sum_probs=54.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCCc-hHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 525 LMAACRVHGEIELAEFAAKQLLQLDPDHDG-ALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 525 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
....+...|++++|...++++++.+|+++. .+..++.+|...|++++|.+.+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 455678899999999999999999999999 99999999999999999999999998754
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.21 Score=57.08 Aligned_cols=129 Identities=11% Similarity=0.122 Sum_probs=78.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHH
Q 004938 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALK 336 (722)
Q Consensus 257 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 336 (722)
..++..+.+.|..+.|.++.+.- ..-.......|++++|.++.+.+. +...|..+...+.+.|+++.|.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~ 702 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIE 702 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHH
Confidence 55556666666666666553211 111233455677777777766653 45678888888888888888888
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004938 337 LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410 (722)
Q Consensus 337 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 410 (722)
.|.++.. |..+...+...|+.+...++-+.+...| -++.....|.+.|++++|.+++.+
T Consensus 703 ~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 703 AFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 8887653 3344444555666666555555444433 124444556667777777766544
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.13 Score=42.50 Aligned_cols=140 Identities=9% Similarity=0.050 Sum_probs=101.8
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHH
Q 004938 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREA 506 (722)
Q Consensus 427 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 506 (722)
.-.|..++..++..+.... .+..-|+.++--....-+-+-..+.++.+-+-+.+ ..+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence 3467788888888877663 34455666665555566666666666666543222 345666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCCc
Q 004938 507 LELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGIL 585 (722)
Q Consensus 507 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 585 (722)
...+-.++. +.......+.....+|.-++-.+++..++..+|-++.....++++|.+.|+..+|.+++++.-++|++
T Consensus 81 i~C~~~~n~--~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcc--hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 666666542 44455667788889999999999999987777777889999999999999999999999999999985
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.01 Score=47.49 Aligned_cols=61 Identities=16% Similarity=0.245 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004938 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMT 478 (722)
Q Consensus 416 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 478 (722)
...|..+...|...|++++|+..|++.++. .|+ ...|..+..++...|++++|.+.|+...
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444555555555555555555555442 232 2344444455555555555555555444
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.015 Score=50.05 Aligned_cols=65 Identities=8% Similarity=-0.032 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHccC-C-CCCchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 517 PNVVIWGSLMAACRVHG---EIELAEFAAKQLLQLD-P-DHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 517 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
++..+.-.+..++.+.+ ++++|+.+++.+++.+ | ++...++.|+-.|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 45555555555555555 4556666666666665 5 3445566666666666666666666666655
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.012 Score=56.37 Aligned_cols=87 Identities=14% Similarity=0.135 Sum_probs=71.9
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHccCCCC-CchHHHHHHHhhhC-CCcch
Q 004938 503 LREALELVETM-PFAPN---VVIWGSLMAACRV-----HGEIELAEFAAKQLLQLDPDH-DGALVLLSNIYAKD-KRWQD 571 (722)
Q Consensus 503 ~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 571 (722)
..+|...+++. .+.|+ ...|..|...|.. -|+.++|++.|+++++++|+. ..+++.++..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45566666665 56676 5688888888888 499999999999999999975 99999999999885 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 004938 572 VGELRKSMKERGILKERA 589 (722)
Q Consensus 572 a~~~~~~m~~~g~~~~~~ 589 (722)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999999877664444
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.033 Score=55.73 Aligned_cols=132 Identities=12% Similarity=0.088 Sum_probs=92.3
Q ss_pred CCCHHHHHHHHHHHH--hc---CCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHh---cC--------CHHHHHHHH
Q 004938 448 DPNGVTFIGVLYACS--HA---GLVDEGREIFASMTNEYNIPPK-YEHYGCMVDLFGR---AN--------LLREALELV 510 (722)
Q Consensus 448 ~p~~~t~~~ll~a~~--~~---g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~---~g--------~~~~A~~~~ 510 (722)
+.+...|...+.+.. .. ....+|..+|+++.+ ..|+ ...|..+..+|.- .+ .+..|.+-.
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 445566777776543 22 345789999999987 3454 3555544444421 11 122233333
Q ss_pred HhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 511 ETMPF-APNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 511 ~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
..+.. ..+..+|..+.-.+...|++++|...++++++++|+ ...|..++.++.-.|++++|.+.+++.....
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 33322 346788888887788889999999999999999975 5677899999999999999999999887754
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0039 Score=63.64 Aligned_cols=421 Identities=11% Similarity=0.111 Sum_probs=251.1
Q ss_pred CCchhHHHHHHHhccCCCCCCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHH
Q 004938 44 SQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPI 123 (722)
Q Consensus 44 ~~~~~~~~~li~~~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 123 (722)
...+.+|+.|-.++.. . +.+.+|..-| +...|...|..+|.+..+.|.+++-+..+...++..- ++..=+.+
T Consensus 51 ~n~p~VWs~LgkAqL~--~--~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteL 122 (624)
T 3lvg_A 51 CNEPAVWSQLAKAQLQ--K--GMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETEL 122 (624)
T ss_dssp CCCCCCSSSHHHHTTT--S--SSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHH
T ss_pred hCCccHHHHHHHHHHc--c--CchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHH
Confidence 3567789999888887 6 7888887765 4455667799999999999999999988877666532 44445789
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCC------------------------
Q 004938 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS------------------------ 179 (722)
Q Consensus 124 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~------------------------ 179 (722)
+-+|++.+++.+-..++ -.|+..-...+.+-|...|.++.|.-+|..+.
T Consensus 123 i~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 123 IFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp HHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT
T ss_pred HHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998876544332 14666666778888888899999988888775
Q ss_pred CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 004938 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTL 259 (722)
Q Consensus 180 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 259 (722)
..++.+|-.+-.+|...+.+.-|.-.--...- .|| -+..++..|-..|.+++-..+++..+... .....+++-|
T Consensus 196 Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTEL 269 (624)
T 3lvg_A 196 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTEL 269 (624)
T ss_dssp CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHH
T ss_pred cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHH
Confidence 24778899999999999999877655444432 122 23345666788899988888887766321 3467788888
Q ss_pred HHHHHhcCChHHHHHHHHhcccC-----------CchHHHHHHHHHHhcCCHHHHHHHH-------------hccC--CC
Q 004938 260 ITMYANCGCMDMAKGLFDKVLLK-----------NLVVSTAMVSGYSRAGQVEDARLIF-------------DQMV--EK 313 (722)
Q Consensus 260 i~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~f-------------~~~~--~~ 313 (722)
.-.|+|- +.++-.+.++-.-.+ ....|..++-.|.+-.+++.|.... .++. ..
T Consensus 270 aILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVa 348 (624)
T 3lvg_A 270 AILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVA 348 (624)
T ss_dssp HHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCS
T ss_pred HHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcc
Confidence 8888886 355555554433222 3457999999999999998775332 1111 12
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHH
Q 004938 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIID 393 (722)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 393 (722)
|+..|..-|..|.+.. +..--+++.-+.. +.|.. -+++.+.+.|.+...+..+..... ..+..+-.++-+
T Consensus 349 N~EiyYKAi~FYL~e~-P~lL~DLL~vL~p---rlDh~---RvV~~~~k~~~LpLIkpYL~~Vq~---~N~~aVNeAln~ 418 (624)
T 3lvg_A 349 NVELYYRAIQFYLEFK-PLLLNDLLMVLSP---RLDHT---RAVNYFSKVKQLPLVKPYLRSVQN---HNNKSVNESLNN 418 (624)
T ss_dssp CSHHHHHHHHHHTTSC-CTTSHHHHHHHCT---TCCST---TTHHHHHTTTCGGGGTGGGTSCCC---SCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-hHHHHHHHHhccc---cCChH---HHHHHHHhcCCchhhHHHHHHHHH---hhHHHHHHHHHH
Confidence 4555655555555432 2222222222211 11111 123333444444433333322211 224455557777
Q ss_pred HHHhcCCHHHHHHHHHhcC------------CCChHHHHHH-HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004938 394 MYAKCGSLESAREVFERMR------------RRNVISWTSM-INAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460 (722)
Q Consensus 394 ~~~~~g~~~~A~~~~~~~~------------~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 460 (722)
.|....+++.-+...+.-. +....-+..+ ...|.+++++.+++.+.++ .++ |.-.+..
T Consensus 419 L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---Dkl------ykDAiet 489 (624)
T 3lvg_A 419 LFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---DSL------YKDAMQY 489 (624)
T ss_dssp HHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---TCC------TTGGGTT
T ss_pred HHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---ccc------HHHHHHH
Confidence 7777777665554433222 1222222222 2345666777777665432 111 1112333
Q ss_pred HHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 004938 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALEL 509 (722)
Q Consensus 461 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 509 (722)
.+.+|+.+-+.++++-..+. -+.+.|...+-.+...=+.+-++++
T Consensus 490 Aa~S~~~elaeeLL~yFv~~----g~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 490 ASESKDTELAEELLQWFLQE----EKRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp TTTCCCTTHHHHHHHHHHHH----CSTHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHc----CchHHHHHHHHHHhhccChHHHHHH
Confidence 45566666666666665542 2234444444444444455555555
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.2 Score=44.22 Aligned_cols=129 Identities=16% Similarity=0.225 Sum_probs=87.0
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004938 393 DMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGRE 472 (722)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 472 (722)
+...++|+++.|.++.+.+ .+...|..+......+|+.+-|.+.|.+... |..+.-.|.-.|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456788999998888776 4677899999999999999999998887654 3344445566777766665
Q ss_pred HHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004938 473 IFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQL 545 (722)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 545 (722)
+-+....+ | -++.-...+.-.|+++++.+++.+.+.-|.... ....+|-.+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 55444432 1 245555666678888888888888764332221 133467777777776654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.022 Score=44.80 Aligned_cols=75 Identities=12% Similarity=-0.016 Sum_probs=56.4
Q ss_pred CCCcchHHHHHHHHHhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHH
Q 004938 484 PPKYEHYGCMVDLFGRANL---LREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVL 558 (722)
Q Consensus 484 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 558 (722)
+++...+..+..++...++ .++|..++++. ...| ++..+..+...+...|++++|...++++++.+|+ ......
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~ 81 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVT 81 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHH
Confidence 4566777777777765444 68888888877 4556 4667778888899999999999999999999998 333433
Q ss_pred H
Q 004938 559 L 559 (722)
Q Consensus 559 l 559 (722)
+
T Consensus 82 i 82 (93)
T 3bee_A 82 I 82 (93)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.29 Score=55.90 Aligned_cols=153 Identities=12% Similarity=0.136 Sum_probs=87.3
Q ss_pred HHhcCCchHHHH-HHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 004938 325 YAENNHPQEALK-LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLES 403 (722)
Q Consensus 325 ~~~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 403 (722)
....+++++|.+ ++.. + |+......++..+.+.|..+.|.++.+.. ..-.+....+|++++
T Consensus 609 ~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHHH
Confidence 345667777665 4311 1 11122255556666677777766544211 111344566788888
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCC
Q 004938 404 AREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNI 483 (722)
Q Consensus 404 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 483 (722)
|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++-+..... |
T Consensus 671 A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~- 737 (814)
T 3mkq_A 671 ARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT-G- 737 (814)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-T-
T ss_pred HHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-C-
Confidence 88887665 3567888888888888888888888887643 233444444456555544444433331 1
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 004938 484 PPKYEHYGCMVDLFGRANLLREALELVETM 513 (722)
Q Consensus 484 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 513 (722)
.++.-..+|.+.|++++|.+++.++
T Consensus 738 -----~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 738 -----KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp -----CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred -----chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2333444455566666666665554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.65 E-value=0.047 Score=43.97 Aligned_cols=43 Identities=33% Similarity=0.425 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHH
Q 004938 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLS 560 (722)
Q Consensus 518 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 560 (722)
...++..|..++.+.|+++.|...++++++++|++..+...+.
T Consensus 45 ~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 45 KVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 4577888999999999999999999999999999976655543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.037 Score=47.55 Aligned_cols=73 Identities=19% Similarity=0.046 Sum_probs=45.9
Q ss_pred CCcchHHHHHHHHHhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHH
Q 004938 485 PKYEHYGCMVDLFGRAN---LLREALELVETM-PFA-P--NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALV 557 (722)
Q Consensus 485 ~~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 557 (722)
++..+...+..++.+.+ +++++..++++. ... | +...+-.|.-+|.+.|++++|++.++++++.+|++..+..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 34444444444444444 333444444443 112 3 2345566777889999999999999999999999864433
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.37 E-value=1.7 Score=38.18 Aligned_cols=98 Identities=10% Similarity=0.110 Sum_probs=47.9
Q ss_pred CCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHH
Q 004938 298 GQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377 (722)
Q Consensus 298 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~ 377 (722)
|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.+.-..+-+...
T Consensus 19 g~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~iA~ 87 (177)
T 3mkq_B 19 GNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQNIAQ 87 (177)
T ss_dssp TCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3333333334433 2344566666666666666666666655432 2233333444555555444444433
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 004938 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR 412 (722)
Q Consensus 378 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 412 (722)
..| -++.-...+.-.|+++++.++|.+..
T Consensus 88 ~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 88 TRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 332 12333344445566666666665543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.35 E-value=0.24 Score=39.69 Aligned_cols=65 Identities=17% Similarity=-0.015 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-------CCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQLD-------PDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 518 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
+..-+-.|...+...|+++.|...++++++.. +.....+..|+.+|.+.|++++|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44455678888999999999999999998753 234457889999999999999999999998764
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.85 E-value=0.42 Score=39.38 Aligned_cols=97 Identities=16% Similarity=0.007 Sum_probs=60.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHH
Q 004938 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLRE---ALELVETM-PFA-P--NVVIWGSLMAACR 530 (722)
Q Consensus 458 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~ll~~~~ 530 (722)
+..-.....+..+.+-|...... + .++..+--.+..++.+.....+ ++.++++. ... | .....-.|.-++.
T Consensus 8 l~~~~~~~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y 85 (126)
T 1nzn_A 8 LNELVSVEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 33334445555666666655542 2 2666666677777777776665 77777766 222 3 1233444556777
Q ss_pred HcCCHHHHHHHHHHHHccCCCCCchH
Q 004938 531 VHGEIELAEFAAKQLLQLDPDHDGAL 556 (722)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~p~~~~~~ 556 (722)
+.|++++|.+.++.+++.+|++..+.
T Consensus 86 klg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 86 RLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 88888888888888888888776443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.71 E-value=0.73 Score=37.95 Aligned_cols=88 Identities=13% Similarity=0.021 Sum_probs=58.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHhHhhcCCCC--CcchHHHHHHHHHhcCC
Q 004938 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE---GREIFASMTNEYNIPP--KYEHYGCMVDLFGRANL 502 (722)
Q Consensus 428 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~ 502 (722)
.......+.+.|.+....|. |+..+-..+..++.++..... ++.+++.+.+. ..| ..+..-.|.-++.|.|+
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhh
Confidence 33445556666666655543 677776677777887776555 88888887763 223 23444456677888999
Q ss_pred HHHHHHHHHhC-CCCCC
Q 004938 503 LREALELVETM-PFAPN 518 (722)
Q Consensus 503 ~~~A~~~~~~~-~~~p~ 518 (722)
+++|.+.++.+ ..+|+
T Consensus 90 Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 90 YEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 99999888887 55564
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=92.64 E-value=8 Score=37.65 Aligned_cols=168 Identities=13% Similarity=0.136 Sum_probs=96.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHH----HHHHHhCCCCCChhhHHHHHHHHHc
Q 004938 287 STAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL----FNEMQVCGMKPDKVTMLSVISACAH 362 (722)
Q Consensus 287 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~~ 362 (722)
|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ .+-..+.+++++..+...++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 44555566666666666665543 22334555665555443 4444556777777777777766655
Q ss_pred cCCch-HHHHHHHHHHH----cC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHc---CCH
Q 004938 363 LGVLD-QAQRIHLYIDK----NA--FGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH---GDA 432 (722)
Q Consensus 363 ~g~~~-~a~~i~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~ 432 (722)
...-+ .-.++.+.+++ .| -..++.....+...|.+.|++.+|+..|-.-...|...+..|+--+... |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 33211 12334444443 22 2246778889999999999999999887633222455555555544443 444
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhh
Q 004938 433 RNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480 (722)
Q Consensus 433 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 480 (722)
.++--+.-+ .++ -+.-.|++..|..+|+...++
T Consensus 185 ~e~dlf~~R--------------aVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 185 STVAEFFSR--------------LVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHHHHH--------------HHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred chHHHHHHH--------------HHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 332222111 122 344678888998888877653
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.26 E-value=0.58 Score=51.79 Aligned_cols=53 Identities=19% Similarity=0.055 Sum_probs=49.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHH
Q 004938 527 AACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSM 579 (722)
Q Consensus 527 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 579 (722)
.-|...|+++.|+.+.+++...-|.+..+|..|+.+|...|+|+.|.-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34677899999999999999999999999999999999999999999998887
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.99 E-value=0.6 Score=39.55 Aligned_cols=54 Identities=6% Similarity=-0.058 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCc
Q 004938 501 NLLREALELVETM-PF-APNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554 (722)
Q Consensus 501 g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 554 (722)
++.++|.++|+.+ .. +.=..+|.....--.++|+++.|..++.+++.+.|.+..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 4555555555554 10 111667766666677899999999999999998887643
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=91.85 E-value=2.3 Score=40.73 Aligned_cols=115 Identities=12% Similarity=0.069 Sum_probs=63.5
Q ss_pred CCCHHHHHHHHhcCCCCCccc--HHHHHH-HHHhC--CC------hhHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHc
Q 004938 165 CGKILDARLMFDKMSYRDIVP--WSVMID-GYFQN--GL------FDEVLNLFEEMKMSNVEPD---EMVLSKILSACSR 230 (722)
Q Consensus 165 ~g~~~~A~~~f~~m~~~~~~~--~~~li~-~~~~~--g~------~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~ 230 (722)
.|+..+-.+.+.+....++.. |..++. ++... |. ...|...+++..+ +.|+ ...|..+...|.+
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 344444445555554333332 655554 33332 32 2345555555554 2444 3456666666666
Q ss_pred -----cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc-CChHHHHHHHHhccc
Q 004938 231 -----AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANC-GCMDMAKGLFDKVLL 281 (722)
Q Consensus 231 -----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~ 281 (722)
.|+.++|++.|++.++.+..-+..++....+.++.. |+.+.|.+.+++...
T Consensus 212 vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~ 268 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALA 268 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 377777777777777765433466666666666663 677777777666543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=91.65 E-value=5.1 Score=33.21 Aligned_cols=84 Identities=11% Similarity=0.096 Sum_probs=57.4
Q ss_pred hcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004938 397 KCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS 476 (722)
Q Consensus 397 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 476 (722)
+||++......+-.+.. +....+.-++.+...|+-++-.+++..+.. ..+|+......+..||.+.|+..++.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 45565555555555433 334455566777788888888888877543 2567777788888888888888888888888
Q ss_pred hHhhcCC
Q 004938 477 MTNEYNI 483 (722)
Q Consensus 477 ~~~~~~~ 483 (722)
+-++ |+
T Consensus 151 AC~k-G~ 156 (172)
T 1wy6_A 151 ACKK-GE 156 (172)
T ss_dssp HHHT-TC
T ss_pred HHHh-hh
Confidence 7763 54
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.48 E-value=0.43 Score=40.40 Aligned_cols=54 Identities=11% Similarity=-0.050 Sum_probs=44.7
Q ss_pred cCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCCc
Q 004938 532 HGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGIL 585 (722)
Q Consensus 532 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 585 (722)
.+|+++|.++|+.++.+...-+..+...+..-.+.|+...|.+++......+.+
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 378999999999998875555556777788888999999999999999886643
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.42 E-value=4.3 Score=34.04 Aligned_cols=47 Identities=11% Similarity=-0.012 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHccCCC-CCchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 535 IELAEFAAKQLLQLDPD-HDGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 535 ~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
..+++.+++.++..+|. .....+.|+-.+.+.|++++|.++.+.+.+
T Consensus 58 i~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 58 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34555566666655553 223444555556666666666666666555
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=89.51 E-value=32 Score=38.94 Aligned_cols=251 Identities=10% Similarity=0.064 Sum_probs=118.7
Q ss_pred HHhcCChHHHHHHHHhcccC----Cch--HHHHHHHHHHhcCCHHHHHHHHhccCC-CC----------cchHHHHHHHH
Q 004938 263 YANCGCMDMAKGLFDKVLLK----NLV--VSTAMVSGYSRAGQVEDARLIFDQMVE-KD----------LICWSAMISGY 325 (722)
Q Consensus 263 ~~~~g~~~~A~~~~~~~~~~----~~~--~~~~li~~~~~~g~~~~A~~~f~~~~~-~~----------~~~~~~li~~~ 325 (722)
....|+.+++..+++..... +.. .-..+.-|...+|..+++...+..... .+ +..-.++.-|+
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 44556666676666666541 111 122233344555555555555544321 11 11223333444
Q ss_pred HhcCC-chHHHHHHHHHHhCCCCCChhh--HH--HHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHH--Hhc
Q 004938 326 AENNH-PQEALKLFNEMQVCGMKPDKVT--ML--SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY--AKC 398 (722)
Q Consensus 326 ~~~g~-~~~A~~~~~~m~~~g~~p~~~t--~~--~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~--~~~ 398 (722)
+-.|. -+++.+.+..+.... +..+ .. ++...+...|+-+....++..+.+.. +..+...++.++ .-.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 44443 245666666665432 2111 11 12223445566666677776665531 222333333333 356
Q ss_pred CCHHHHHHHHHhcCC-CCh-HHHH---HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004938 399 GSLESAREVFERMRR-RNV-ISWT---SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473 (722)
Q Consensus 399 g~~~~A~~~~~~~~~-~~~-~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 473 (722)
|+.+.+..+.+.+.. .|. .-|. ++.-+|+..|+.....+++..+.... ..+......+.-++...|+.+.+.++
T Consensus 538 g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 538 GRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 777777766666542 332 2333 23345667777665555777777631 11222222222244445665556666
Q ss_pred HHHhHhhcCCCCCcchHHHHHHHHHhcCCH-HHHHHHHHhCCCCCCHHHH
Q 004938 474 FASMTNEYNIPPKYEHYGCMVDLFGRANLL-REALELVETMPFAPNVVIW 522 (722)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~p~~~~~ 522 (722)
++.+.+ ...|.+..-..+.-+....|.. .+|.+.+..+...+|..+-
T Consensus 617 v~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vr 664 (963)
T 4ady_A 617 VQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVR 664 (963)
T ss_dssp TTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHH
Confidence 655544 2233333333333333334332 5677777777445555433
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=89.01 E-value=28 Score=37.62 Aligned_cols=123 Identities=14% Similarity=0.012 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHH
Q 004938 430 GDARNALIFFNKMKDESIDPNGVTF----IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLRE 505 (722)
Q Consensus 430 g~~~~A~~~~~~m~~~g~~p~~~t~----~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 505 (722)
.+.+.|..+|......+ ..+.... ..+.......+...++...+..... ..++.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHH
Confidence 47899999998887543 2233322 2233333344535566667766543 12333333334444557899999
Q ss_pred HHHHHHhCCCCC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHH
Q 004938 506 ALELVETMPFAP-N-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLS 560 (722)
Q Consensus 506 A~~~~~~~~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 560 (722)
|...|+.|+..+ + ....-=+..+....|+.++|..+|+++.+ + .+.|-.++
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~lA 356 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--Q--RGFYPMVA 356 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHHH
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CChHHHHH
Confidence 999999995433 2 22122245567788999999999999975 3 24555443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=88.96 E-value=18 Score=35.38 Aligned_cols=167 Identities=13% Similarity=0.113 Sum_probs=92.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHH----HHHHhCCCCCChhhHHHHHHHHHc
Q 004938 287 STAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF----NEMQVCGMKPDKVTMLSVISACAH 362 (722)
Q Consensus 287 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~~ 362 (722)
+.++..-|.+.+++++|.+++-. -...+.+.|+...|-++- +-..+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 44455556666666666665433 223344556655444433 444556777777777777776665
Q ss_pred cCCch-HHHHHHHHHHH----cC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHH
Q 004938 363 LGVLD-QAQRIHLYIDK----NA--FGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNA 435 (722)
Q Consensus 363 ~g~~~-~a~~i~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 435 (722)
...-+ .=..+.+.+++ .| -.-++.....+...|.+.+++.+|+..|-.-..+....+..|+--+...+...++
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~ 186 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTA 186 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccH
Confidence 54322 11233333332 23 2346777888999999999999999888432222235565555444433332211
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 004938 436 LIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479 (722)
Q Consensus 436 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 479 (722)
|...-..++ -|.-.+++..|...++...+
T Consensus 187 --------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 187 --------------PLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 111222222 34556788888887776664
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=88.22 E-value=39 Score=38.28 Aligned_cols=286 Identities=10% Similarity=0.003 Sum_probs=144.9
Q ss_pred HHHHHHHHHHhcCChHHH-HHHHHhccc--CCchH-HHHHHHHHHhcCCHHHHHHHHhccCCC----Cc--chHHHHHHH
Q 004938 255 LQSTLITMYANCGCMDMA-KGLFDKVLL--KNLVV-STAMVSGYSRAGQVEDARLIFDQMVEK----DL--ICWSAMISG 324 (722)
Q Consensus 255 ~~~~li~~~~~~g~~~~A-~~~~~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~~f~~~~~~----~~--~~~~~li~~ 324 (722)
+-.++.+++..+|--.+. .+....... .+-.- -.+.--|....|+.++++.+++..... +. ..-..+.-|
T Consensus 341 ~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLG 420 (963)
T 4ady_A 341 TAVSVANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLG 420 (963)
T ss_dssp HHHHHHHHHHTTTTCCCHHHHHCHHHHHHCCTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcchhhhcchhhhhccchHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHH
Confidence 345667777777743322 111111111 11111 122333567789999999999887652 21 233444556
Q ss_pred HHhcCCchHHHHHHHHHHhCCC-------CCChhhHHHHHHHHHccCCc-hHHHHHHHHHHHcCCCCCh--hHHHHHHHH
Q 004938 325 YAENNHPQEALKLFNEMQVCGM-------KPDKVTMLSVISACAHLGVL-DQAQRIHLYIDKNAFGGDL--RVNNAIIDM 394 (722)
Q Consensus 325 ~~~~g~~~~A~~~~~~m~~~g~-------~p~~~t~~~ll~~~~~~g~~-~~a~~i~~~~~~~~~~~~~--~~~~~li~~ 394 (722)
....|..++++.++...+...- .+....-..+.-+.+-.|.- +++...+..++...- +.. ...-+|.-.
T Consensus 421 li~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli 499 (963)
T 4ady_A 421 LIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLC 499 (963)
T ss_dssp HHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhh
Confidence 7777877788888877665321 01111112222223333322 344455555444221 111 111233444
Q ss_pred HHhcCCHHHHHHHHHhcCC-CChH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHH---HHHHHHHhcCCH
Q 004938 395 YAKCGSLESAREVFERMRR-RNVI--SWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV-TFI---GVLYACSHAGLV 467 (722)
Q Consensus 395 ~~~~g~~~~A~~~~~~~~~-~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~---~ll~a~~~~g~~ 467 (722)
|.-.|+-+....++..+.+ .+.. -.-++.-++...|+.+.+..+.+.+... +|.. -|. .+.-+|+..|+.
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCH
T ss_pred hcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCH
Confidence 5566777777777776543 2222 2233334455788998888888888763 3332 333 334467788998
Q ss_pred HHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH--HHHHHHHHcCC-HHHHHHHHHH
Q 004938 468 DEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWG--SLMAACRVHGE-IELAEFAAKQ 544 (722)
Q Consensus 468 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~--~ll~~~~~~g~-~~~a~~~~~~ 544 (722)
....+++..+..+ ...++.-...+.-++...|+.+.+.++++.+....|..+-. .+.-+....|+ ..++...+.+
T Consensus 577 ~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~ 654 (963)
T 4ady_A 577 SAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 8888899888763 22223323333333334566555666665542222333222 22222222322 2566667776
Q ss_pred HH
Q 004938 545 LL 546 (722)
Q Consensus 545 ~~ 546 (722)
+.
T Consensus 655 L~ 656 (963)
T 4ady_A 655 LT 656 (963)
T ss_dssp HH
T ss_pred Hc
Confidence 65
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=86.65 E-value=24 Score=34.22 Aligned_cols=130 Identities=9% Similarity=0.070 Sum_probs=80.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHH----HHHHHHCCCCCCHhHHHHHHHHHHc
Q 004938 155 QTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL----FEEMKMSNVEPDEMVLSKILSACSR 230 (722)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~~ 230 (722)
+.++..-|.+.+++++|+.++.. -...+.+.|+...|-++ ++...+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 34556667788999999988743 24456677887766664 4555667888998888888877765
Q ss_pred cC--Ch---HHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHH
Q 004938 231 AG--NL---SYGEAVHEFIIDNN--VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295 (722)
Q Consensus 231 ~g--~~---~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 295 (722)
.. .. .-......+-.+.| ...|+.....+...|.+.|++.+|+..|-.-...+...+..++.-+.
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~ 176 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWL 176 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 33 21 22223333333333 23477788888888888888888888764222223444444444333
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=86.50 E-value=26 Score=34.34 Aligned_cols=110 Identities=14% Similarity=0.084 Sum_probs=71.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHH----HHHHHCCCCCCHhHHHHHHHHHHcc
Q 004938 156 TGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLF----EEMKMSNVEPDEMVLSKILSACSRA 231 (722)
Q Consensus 156 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~~~ 231 (722)
.++..-|.+.+++++|++++-. -...+.+.|+...|-++- +-..+.++++|..+...++..+...
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 3455567888999999988733 244566777776665554 4456678889988888888877665
Q ss_pred CChH-HHHHHHHHH----HHcC--CCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 004938 232 GNLS-YGEAVHEFI----IDNN--VALDAHLQSTLITMYANCGCMDMAKGLF 276 (722)
Q Consensus 232 g~~~-~a~~~~~~~----~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 276 (722)
..-+ .=..+.+.+ .+.| ..-|+.....+...|.+.+++.+|+..|
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4321 112233333 3333 3446777777888888888888887776
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=84.88 E-value=7.6 Score=30.02 Aligned_cols=86 Identities=15% Similarity=0.178 Sum_probs=58.1
Q ss_pred CchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004938 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444 (722)
Q Consensus 365 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 444 (722)
..++|..|-+.+...+. ...+--.=+..+...|++++|..+.+.+.-||...|-++... +.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 45666666666655442 222222223456788999999999999999999999888654 66888888877777766
Q ss_pred cCCCCCHHHHH
Q 004938 445 ESIDPNGVTFI 455 (722)
Q Consensus 445 ~g~~p~~~t~~ 455 (722)
+| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 45444443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=84.86 E-value=23 Score=35.83 Aligned_cols=56 Identities=13% Similarity=0.011 Sum_probs=24.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHh
Q 004938 457 VLYACSHAGLVDEGREIFASMTNEYNIPPK----YEHYGCMVDLFGRANLLREALELVET 512 (722)
Q Consensus 457 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~ 512 (722)
+...+...|++.+|..++..+.+...-..| .++|..-+.+|...|++.++...+.+
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~ 164 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTS 164 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 344444555555555555444442111111 12333444444555555555544443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.47 E-value=40 Score=34.78 Aligned_cols=31 Identities=6% Similarity=0.242 Sum_probs=20.9
Q ss_pred CChhHHHHHHHHHHhc--CCHHHHHHHHHhcCC
Q 004938 383 GDLRVNNAIIDMYAKC--GSLESAREVFERMRR 413 (722)
Q Consensus 383 ~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~ 413 (722)
++...+..|+.+|... .+++.+.+.|.....
T Consensus 291 ~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~ 323 (445)
T 4b4t_P 291 KKLESQESLVKLFTTNELMRWPIVQKTYEPVLN 323 (445)
T ss_dssp HHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTT
T ss_pred cccHHHHHHHHHHHhchHhhhHHHHHHHHHHhc
Confidence 4566777788888764 456777777766554
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=84.00 E-value=7.1 Score=30.14 Aligned_cols=86 Identities=15% Similarity=0.101 Sum_probs=59.0
Q ss_pred CchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004938 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444 (722)
Q Consensus 365 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 444 (722)
..++|..|-+.+...+. ...+--.=+..+...|++++|..+.+.+.-||...|-++.. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666655442 22222222345678899999999999999999999988865 477888888888878777
Q ss_pred cCCCCCHHHHH
Q 004938 445 ESIDPNGVTFI 455 (722)
Q Consensus 445 ~g~~p~~~t~~ 455 (722)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 55544443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=83.96 E-value=10 Score=29.32 Aligned_cols=57 Identities=16% Similarity=0.117 Sum_probs=35.1
Q ss_pred HHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhH
Q 004938 294 YSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353 (722)
Q Consensus 294 ~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 353 (722)
+...|++++|..+.+.+.-||...|-+|.. .+.|..+++...+.++..+| .|....|
T Consensus 50 LmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 445556666666677777777777766644 35566677777776666665 4444444
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.25 E-value=5 Score=34.67 Aligned_cols=26 Identities=8% Similarity=0.208 Sum_probs=15.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCC
Q 004938 489 HYGCMVDLFGRANLLREALELVETMP 514 (722)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~~~ 514 (722)
.---+...|.+.|++++|+.+++.+|
T Consensus 124 lkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 124 VKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 33345556666666666666666664
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=82.17 E-value=6.5 Score=30.58 Aligned_cols=63 Identities=17% Similarity=0.204 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 004938 431 DARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495 (722)
Q Consensus 431 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 495 (722)
+.-+..+-++.+....+.|+.....+.+.||.+.+++.-|.++|+.++.+. .+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 344666777777777889999999999999999999999999999988753 334556777654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=82.03 E-value=4 Score=33.75 Aligned_cols=69 Identities=10% Similarity=0.046 Sum_probs=37.9
Q ss_pred CCcchHHHHHHHHHhcCCHH---HHHHHHHhC-CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCC
Q 004938 485 PKYEHYGCMVDLFGRANLLR---EALELVETM-PFAPN--VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD 553 (722)
Q Consensus 485 ~~~~~~~~li~~~~~~g~~~---~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 553 (722)
|+..+--.+..++.+....+ +++.++++. ...|. ...+--|.-|+.+.|++++|.+..+.+++.+|++.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 44444445555555555433 355555544 22231 23444455566667777777777777777777664
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.96 E-value=5.4 Score=34.45 Aligned_cols=120 Identities=18% Similarity=0.112 Sum_probs=58.3
Q ss_pred CCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCc-------chHHHHHHHHHhcCCHHHHHHHHHhC---
Q 004938 446 SIDPNGV--TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY-------EHYGCMVDLFGRANLLREALELVETM--- 513 (722)
Q Consensus 446 g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~--- 513 (722)
|+.|... ++..-+..+...|.++.|+-+.+.+..-.+..|+. .++..+.+++...|++..|...|++.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4445432 34445566667777777776666655422223332 24455566666666666666666553
Q ss_pred ----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHH
Q 004938 514 ----PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSM 579 (722)
Q Consensus 514 ----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 579 (722)
...|+. ..++ . ...... .-..+ +.+...-+.++..|.+.|++++|..+++.+
T Consensus 93 ~k~l~k~~s~--~~~~-~---~~ss~p-------~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 93 KKALSKTSKV--RPST-G---NSASTP-------QSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHCC---------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHhcCCCc--cccc-c---ccCCCc-------ccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 111111 0000 0 000000 00011 222345667999999999999999998754
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=80.07 E-value=6.9 Score=30.45 Aligned_cols=61 Identities=10% Similarity=0.063 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHH
Q 004938 99 KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160 (722)
Q Consensus 99 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 160 (722)
-+..+-++.+....+.|++....+.|++|.|.+++..|.++++-+...- .+...+|..++.
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 3566667777777788888888888999999999999988888775542 333455666554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 722 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-07 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-06 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-05 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.0 bits (123), Expect = 1e-07
Identities = 40/386 (10%), Positives = 101/386 (26%), Gaps = 22/386 (5%)
Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSAC-SRAGNLSYGEAVHEFIID---NN 248
+Q G F+ ++ EPD + +LS+ + L I
Sbjct: 9 EYQAGDFEAAERHCM--QLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL 66
Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
++L + ++ + + + +
Sbjct: 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS 126
Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC-AHLGVLD 367
+ + G + ++ +P+ S + G +
Sbjct: 127 ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW 186
Query: 368 QAQRIH---LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
A + +D N L + ++ + + A + R + N
Sbjct: 187 LAIHHFEKAVTLDPN----FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242
Query: 425 ---AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481
+ G A+ + + + P+ L A + T
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAI--ELQPHFPDAYCNL-ANALKEKGSVAEAEDCYNTALR 299
Query: 482 NIPPKYEHYGCMVDLFGRANLLREALELVE-TMPFAP-NVVIWGSLMAACRVHGEIELAE 539
P + + ++ + EA+ L + P +L + + G+++ A
Sbjct: 300 LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 359
Query: 540 FAAKQLLQLDPDHDGALVLLSNIYAK 565
K+ +++ P A + N +
Sbjct: 360 MHYKEAIRISPTFADAYSNMGNTLKE 385
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (112), Expect = 3e-06
Identities = 42/357 (11%), Positives = 101/357 (28%), Gaps = 25/357 (7%)
Query: 230 RAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL--------- 280
+AG+ E + + + L +++ C +D + +
Sbjct: 11 QAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEA 69
Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
NL A + L I +A + + +A +
Sbjct: 70 YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129
Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
+ + + A + + ++ G
Sbjct: 130 YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFA-----VAWSNLGCVFNAQGE 184
Query: 401 LESAREVFER---MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF-IG 456
+ A FE+ + + ++ ++ N A+ + + S + V +
Sbjct: 185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244
Query: 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVET--MP 514
+Y GL+D + + P + Y + + + EA + T
Sbjct: 245 CVY--YEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300
Query: 515 FAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQD 571
+ +L R G IE A ++ L++ P+ A L+++ + + Q+
Sbjct: 301 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 357
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.0 bits (105), Expect = 2e-05
Identities = 31/284 (10%), Positives = 69/284 (24%), Gaps = 9/284 (3%)
Query: 294 YSRAGQVEDARLIFDQMVEKD---LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
+AG E A Q+ ++ + S + + + P
Sbjct: 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFST--LAIKQNPLL 66
Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
S + + + I Y D +
Sbjct: 67 AEAYSNL-GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125
Query: 411 MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470
+ + + A L ++I+ + E
Sbjct: 126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEI 185
Query: 471 REIFASMTNEYNIPPKY-EHYGCMVDLFGRANLLREALELVETMP--FAPNVVIWGSLMA 527
+ P + + Y + ++ A + A+ + V+ G+L
Sbjct: 186 WLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC 245
Query: 528 ACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQD 571
G I+LA ++ ++L P A L+N + +
Sbjct: 246 VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAE 289
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 722 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.54 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.53 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.1 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.04 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.01 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.0 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.97 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.96 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.95 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.92 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.86 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.75 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.56 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.53 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.52 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.49 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.43 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.41 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.39 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.38 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.37 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.34 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.34 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.29 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.24 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.06 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.05 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.05 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.01 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.98 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.98 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.96 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.9 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.87 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.82 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.81 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.78 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.77 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.76 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.73 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.66 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.64 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.5 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.47 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.44 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.43 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.3 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.17 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.07 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.92 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.8 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.8 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.92 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.8 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.38 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 91.65 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 91.29 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.97 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.8 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 89.63 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 81.71 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 80.88 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=2.4e-20 Score=193.52 Aligned_cols=370 Identities=13% Similarity=0.109 Sum_probs=277.4
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChH
Q 004938 191 DGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMD 270 (722)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 270 (722)
..+.+.|++++|++.|+++.+.. +-+...+..+...+...|++++|...++.+++.. +.+..++..+...|.+.|+++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccc
Confidence 44555677777777776665542 2234556666666667777777777777776654 235566677777777777777
Q ss_pred HHHHHHHhcccCC---chHHHHHHHHHHhcCCHHHHHHHHhcc---CCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 004938 271 MAKGLFDKVLLKN---LVVSTAMVSGYSRAGQVEDARLIFDQM---VEKDLICWSAMISGYAENNHPQEALKLFNEMQVC 344 (722)
Q Consensus 271 ~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 344 (722)
+|...+......+ ...+..........+....+....... .......+..........+....+...+.+....
T Consensus 85 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T d1w3ba_ 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhcc
Confidence 7777776664332 222333333333333333333333222 2334455666666777778888888888877765
Q ss_pred CCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHH
Q 004938 345 GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTS 421 (722)
Q Consensus 345 g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 421 (722)
. +-+...+..+...+...|+++.|...+..+++.. +.+...+..+...+...|++++|...|++... .+...|..
T Consensus 165 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 242 (388)
T d1w3ba_ 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred C-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHH
Confidence 3 2345566777778888999999999999888764 44567888899999999999999999987653 56678888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhc
Q 004938 422 MINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRA 500 (722)
Q Consensus 422 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 500 (722)
+...+.+.|++++|+..|++..+ +.|+ ..++..+...+...|++++|.+.++.... ..+.+...+..+...+.+.
T Consensus 243 l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~ 318 (388)
T d1w3ba_ 243 LACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHHC
Confidence 99999999999999999999988 4665 45788889999999999999999999887 4566778889999999999
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCC
Q 004938 501 NLLREALELVETM-PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKR 568 (722)
Q Consensus 501 g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 568 (722)
|++++|++.+++. ...|+ ..+|..+...+...|++++|...++++++++|+++.++..|+.+|.+.|+
T Consensus 319 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999986 66665 67889999999999999999999999999999999999999999988875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=2.7e-19 Score=185.39 Aligned_cols=353 Identities=12% Similarity=0.076 Sum_probs=292.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccC---CchHHHHHHHHHHhcCCH
Q 004938 224 ILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK---NLVVSTAMVSGYSRAGQV 300 (722)
Q Consensus 224 ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~ 300 (722)
+...+.+.|+++.|.+.++.+++.. +.+..++..+...|.+.|++++|...|++..+. +..+|..+...|.+.|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence 3455677899999999999999874 446888999999999999999999999998543 567899999999999999
Q ss_pred HHHHHHHhccCCC---CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHH
Q 004938 301 EDARLIFDQMVEK---DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377 (722)
Q Consensus 301 ~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~ 377 (722)
++|...+...... +...+..........+....+........... .................+....+...+....
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhh
Confidence 9999999887543 33445555566666777777777776666543 3344444555556667778888888877777
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004938 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454 (722)
Q Consensus 378 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 454 (722)
... +.+...+..+...+...|++++|...+++..+ .+...|..+...+...|++++|+..|++..... ..+...+
T Consensus 163 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 240 (388)
T d1w3ba_ 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred ccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHH
Confidence 653 44567788889999999999999999987653 466789999999999999999999999998853 3445678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHc
Q 004938 455 IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM--PFAPNVVIWGSLMAACRVH 532 (722)
Q Consensus 455 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~ 532 (722)
..+...+.+.|++++|...|+.+.+ ..+.+...+..+...|...|++++|++.++.. ..+.+...+..+...+...
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHC
Confidence 8888999999999999999999987 34556788999999999999999999999887 2345678889999999999
Q ss_pred CCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 533 GEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 533 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 319 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998763
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=4.4e-13 Score=134.61 Aligned_cols=249 Identities=11% Similarity=-0.013 Sum_probs=161.9
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 004938 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400 (722)
Q Consensus 321 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~ 400 (722)
....+.+.|++++|+..|+++++.. +-+..++..+..++...|++++|...+..+++.. +.+...+..+...|...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 3444556666666666666665542 1134455555555666666666666666655543 2344555555666666666
Q ss_pred HHHHHHHHHhcCC--CC----------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH
Q 004938 401 LESAREVFERMRR--RN----------------VISWTSMINAFAIHGDARNALIFFNKMKDES-IDPNGVTFIGVLYAC 461 (722)
Q Consensus 401 ~~~A~~~~~~~~~--~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~ 461 (722)
+++|.+.++.... |+ .......+..+...+...+|.+.|.+..... -.++...+..+...+
T Consensus 103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~ 182 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 182 (323)
T ss_dssp HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 6666666655431 10 1111112233445566788888888877632 123456777888888
Q ss_pred HhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 004938 462 SHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAE 539 (722)
Q Consensus 462 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 539 (722)
...|++++|...|+..... .+.+...|..+...|.+.|++++|.+.+++. ...| +..+|..+..+|...|++++|+
T Consensus 183 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~ 260 (323)
T d1fcha_ 183 NLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV 260 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999998863 3445778889999999999999999999887 4455 4678999999999999999999
Q ss_pred HHHHHHHccCCCCCchH-----------HHHHHHhhhCCCcchHH
Q 004938 540 FAAKQLLQLDPDHDGAL-----------VLLSNIYAKDKRWQDVG 573 (722)
Q Consensus 540 ~~~~~~~~~~p~~~~~~-----------~~l~~~~~~~g~~~~a~ 573 (722)
..|+++++++|++...+ ..+..++...|+++.+.
T Consensus 261 ~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 261 EHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999988876543 33455555556555443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=3.9e-13 Score=135.06 Aligned_cols=225 Identities=14% Similarity=0.022 Sum_probs=187.6
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCC
Q 004938 355 SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGD 431 (722)
Q Consensus 355 ~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 431 (722)
.....+.+.|++++|...|+.+++.. +.+...+..+...|...|++++|...|++..+ .+...|..+...|...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccc
Confidence 34556789999999999999999874 45678899999999999999999999998763 467889999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHH----------------HHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 004938 432 ARNALIFFNKMKDESIDPNGVT----------------FIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495 (722)
Q Consensus 432 ~~~A~~~~~~m~~~g~~p~~~t----------------~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 495 (722)
+++|++.+++.... .|+... ....+..+...+...++...|..+.+.....++...+..+..
T Consensus 103 ~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~ 180 (323)
T d1fcha_ 103 QRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 180 (323)
T ss_dssp HHHHHHHHHHHHHT--STTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred ccccccchhhHHHh--ccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 99999999998873 443211 111222344557788899999888764344455677888999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHH
Q 004938 496 LFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVG 573 (722)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 573 (722)
.+.+.|++++|+..+++. ...| +..+|..+...+...|++++|...++++++++|+++.++..++.+|.+.|++++|.
T Consensus 181 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~ 260 (323)
T d1fcha_ 181 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV 260 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999987 4445 57889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC
Q 004938 574 ELRKSMKER 582 (722)
Q Consensus 574 ~~~~~m~~~ 582 (722)
+.+++..+.
T Consensus 261 ~~~~~al~l 269 (323)
T d1fcha_ 261 EHFLEALNM 269 (323)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998773
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=8.7e-09 Score=103.52 Aligned_cols=258 Identities=15% Similarity=0.042 Sum_probs=174.2
Q ss_pred HHHHHhcCCchHHHHHHHHHHhCCCCCCh------hhHHHHHHHHHccCCchHHHHHHHHHHHcCC--CC---ChhHHHH
Q 004938 322 ISGYAENNHPQEALKLFNEMQVCGMKPDK------VTMLSVISACAHLGVLDQAQRIHLYIDKNAF--GG---DLRVNNA 390 (722)
Q Consensus 322 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~--~~---~~~~~~~ 390 (722)
...+...|++++|++++++..+. .|+. ..+..+..++...|++++|...+..+.+... .. ....+..
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~--~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEE--LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 96 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHT--CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh--CcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 44556777777777777777654 2321 2445555667777777777777776654211 11 1234455
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-------C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CCHHHHH
Q 004938 391 IIDMYAKCGSLESAREVFERMRR-------R----NVISWTSMINAFAIHGDARNALIFFNKMKDESID----PNGVTFI 455 (722)
Q Consensus 391 li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~ 455 (722)
+...+...|++..|...+..... + ....+..+...+...|+.+.+...+.+....... ....++.
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 176 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 176 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 66677788888888777765431 1 1134556667788889999999888887763221 1223455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC-----cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-----CHHHHHH
Q 004938 456 GVLYACSHAGLVDEGREIFASMTNEYNIPPK-----YEHYGCMVDLFGRANLLREALELVETM-PFAP-----NVVIWGS 524 (722)
Q Consensus 456 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~ 524 (722)
.....+...+...++...+........-... ...+..+...+...|++++|...+++. ...| ....+..
T Consensus 177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 256 (366)
T d1hz4a_ 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 5666777888888888888776653222221 223555667788899999999999876 2222 2356667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHc------cCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 525 LMAACRVHGEIELAEFAAKQLLQ------LDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 525 ll~~~~~~g~~~~a~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
+..++...|++++|...+++++. ..|+....+..++.+|...|++++|.+.+++..+
T Consensus 257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 78889999999999999998874 3455566788899999999999999999988765
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.04 E-value=1.1e-08 Score=100.98 Aligned_cols=186 Identities=12% Similarity=0.110 Sum_probs=142.6
Q ss_pred CchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C-hHHHHHHHHHHHHcCCHHHHHHHHH
Q 004938 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR--R-N-VISWTSMINAFAIHGDARNALIFFN 440 (722)
Q Consensus 365 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~~ 440 (722)
..+++..+++..++...+.+...+...+..+.+.|+++.|..+|+++.+ | + ...|...+..+.+.|+.++|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4577888888888765556677788888888999999999999988754 2 2 3478888888889999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC----CC
Q 004938 441 KMKDESIDPNGVTFIGVLYA-CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM----PF 515 (722)
Q Consensus 441 ~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~ 515 (722)
++++.+ +.+...|...... +...|+.+.|..+|+.+.+. .+.+...|...++.+.+.|++++|..+|++. +.
T Consensus 159 ~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 988753 2233344333332 34468899999999998873 4556778888899999999999999999886 34
Q ss_pred CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCC
Q 004938 516 APN--VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD 553 (722)
Q Consensus 516 ~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 553 (722)
.|+ ...|...+.--..+|+.+.+..+++++.+..|+..
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 443 46788888888888999999999999988888664
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=1.9e-09 Score=106.72 Aligned_cols=187 Identities=12% Similarity=0.104 Sum_probs=95.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Q 004938 390 AIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHG-DARNALIFFNKMKDESIDPN-GVTFIGVLYACSHA 464 (722)
Q Consensus 390 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~ 464 (722)
.+...+.+.+..++|.++++++.+ .+...|+.....+...| ++++|+..+++.++ +.|+ ..+|..+...+.+.
T Consensus 48 ~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~--~~p~~~~a~~~~~~~~~~l 125 (315)
T d2h6fa1 48 YFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQPKNYQVWHHRRVLVEWL 125 (315)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HHHhhhhHHHHHhHHHHhh
Confidence 333444444555555555554442 23344555555544443 25555555555554 2333 23455555555555
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC------HH
Q 004938 465 GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGE------IE 536 (722)
Q Consensus 465 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~------~~ 536 (722)
|++++|++.++.+.+ ..+.+...|..+...+.+.|++++|++.++++ ...| +...|+.+...+...+. ++
T Consensus 126 ~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~ 203 (315)
T d2h6fa1 126 RDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLE 203 (315)
T ss_dssp TCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHH
T ss_pred ccHHHHHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhH
Confidence 555555555555554 23334455555555555555555555555554 3333 34455554444443332 45
Q ss_pred HHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 537 LAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 537 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
+|...+.++++++|++...+..++.++...| .+++.+.++...+
T Consensus 204 ~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 204 REVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHH
T ss_pred HhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHH
Confidence 6666666666666666666666666555443 3555555555544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.00 E-value=4.3e-10 Score=112.92 Aligned_cols=230 Identities=8% Similarity=-0.098 Sum_probs=169.3
Q ss_pred HhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC--CchHHHHHHHHHHHcCCCCChhHH-HHHHHHHHhcCCHH
Q 004938 326 AENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG--VLDQAQRIHLYIDKNAFGGDLRVN-NAIIDMYAKCGSLE 402 (722)
Q Consensus 326 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g--~~~~a~~i~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~ 402 (722)
...|++++|+..++...+.. +-+...+.....++...+ +.+++...+..+++.. +++...+ ......+...|..+
T Consensus 84 ~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
T d1dcea1 84 ESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPA 161 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccH
Confidence 34455778888888887653 224445555555555554 4678888888888764 3334444 34556777889999
Q ss_pred HHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 004938 403 SAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479 (722)
Q Consensus 403 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 479 (722)
+|...++...+ .+..+|+.+...+...|++++|...+++.... .|+. ..+...+...+..+++...+.....
T Consensus 162 ~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~ 236 (334)
T d1dcea1 162 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLL 236 (334)
T ss_dssp HHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHH
Confidence 99999998876 46678998999999999988887766655442 2322 2233344556677778888887775
Q ss_pred hcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHH
Q 004938 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALV 557 (722)
Q Consensus 480 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 557 (722)
.-+++...+..++..+...|+.++|.+.+.+. ...|+ ..+|..+...+...|+.++|...++++++++|+....|.
T Consensus 237 --~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~ 314 (334)
T d1dcea1 237 --GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 314 (334)
T ss_dssp --SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred --hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHH
Confidence 45566777788888899999999999999887 55664 468888999999999999999999999999999888888
Q ss_pred HHHHHhh
Q 004938 558 LLSNIYA 564 (722)
Q Consensus 558 ~l~~~~~ 564 (722)
.|+..+.
T Consensus 315 ~L~~~~~ 321 (334)
T d1dcea1 315 DLRSKFL 321 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8877665
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=8.7e-08 Score=95.93 Aligned_cols=259 Identities=9% Similarity=-0.047 Sum_probs=159.6
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhCCC-CCC----hhhHHHHHHHHHccCCchHHHHHHHHHHHc----CCCCC---
Q 004938 317 CWSAMISGYAENNHPQEALKLFNEMQVCGM-KPD----KVTMLSVISACAHLGVLDQAQRIHLYIDKN----AFGGD--- 384 (722)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~----~~~~~--- 384 (722)
+++.+...|...|++++|+..|++...... .++ ..++..+...+...|++..+...+...... +....
T Consensus 53 a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~ 132 (366)
T d1hz4a_ 53 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 132 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHH
Confidence 455555666666666666666666543210 011 123344445566667777777666655431 11111
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC----
Q 004938 385 LRVNNAIIDMYAKCGSLESAREVFERMRR--------RNVISWTSMINAFAIHGDARNALIFFNKMKDE--SIDPN---- 450 (722)
Q Consensus 385 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---- 450 (722)
...+..+...+...|+++.|...+..... .....+..+...+...++..++...+.+.... .....
T Consensus 133 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~ 212 (366)
T d1hz4a_ 133 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 212 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchH
Confidence 22445566777788888888877776542 12345555666777888888888887765541 11111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC--cchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HH
Q 004938 451 GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK--YEHYGCMVDLFGRANLLREALELVETM-------PFAPN-VV 520 (722)
Q Consensus 451 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~ 520 (722)
...+..+...+...|+.++|...+..........+. ...+..+...|...|++++|...+++. +..|+ ..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 292 (366)
T d1hz4a_ 213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 292 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHH
Confidence 123455566778889999999998877652111111 233456778888999999998888765 33443 35
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCC---------chHHHHHHHhhhCCCcchHHHH
Q 004938 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD---------GALVLLSNIYAKDKRWQDVGEL 575 (722)
Q Consensus 521 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---------~~~~~l~~~~~~~g~~~~a~~~ 575 (722)
+|..+...+...|++++|...+++++++.+... ..+..+...+...++.+++.+-
T Consensus 293 ~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 293 NLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 778888889999999999999999988654321 1233344455566777766543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.96 E-value=4.3e-09 Score=100.95 Aligned_cols=221 Identities=10% Similarity=-0.029 Sum_probs=142.1
Q ss_pred CchHHHHHHHHHHhCCC-CC--ChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 004938 330 HPQEALKLFNEMQVCGM-KP--DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESARE 406 (722)
Q Consensus 330 ~~~~A~~~~~~m~~~g~-~p--~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 406 (722)
+.+.|+.-+++...... .+ ...++..+..++.+.|++++|...|..+++.. +.+..+++.+..+|.+.|++++|.+
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhh
Confidence 34455666666654321 11 12345556667778888888888888887763 4567788888888888999999998
Q ss_pred HHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcC
Q 004938 407 VFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYN 482 (722)
Q Consensus 407 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 482 (722)
.|++..+ .+..+|..+...|...|++++|+..|++..+. .|+ ......+..+..+.+..+....+......
T Consensus 93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 167 (259)
T d1xnfa_ 93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--- 167 (259)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---
T ss_pred hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---
Confidence 8888764 35668888888899999999999999988874 444 33333444455555655555555555443
Q ss_pred CCCCcchHHHHHHHHHhcCC----HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchH
Q 004938 483 IPPKYEHYGCMVDLFGRANL----LREALELVETM-PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL 556 (722)
Q Consensus 483 ~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 556 (722)
..+....++ ++..+..... .+.+...+... ...|+ ..+|..+...+...|++++|...|+++++.+|++...|
T Consensus 168 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 168 SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred cchhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 223332333 2333322222 22222222211 12233 34677788899999999999999999999999886544
Q ss_pred H
Q 004938 557 V 557 (722)
Q Consensus 557 ~ 557 (722)
.
T Consensus 247 ~ 247 (259)
T d1xnfa_ 247 R 247 (259)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=1.3e-08 Score=100.43 Aligned_cols=211 Identities=12% Similarity=0.126 Sum_probs=113.2
Q ss_pred ccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHH
Q 004938 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG-SLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALI 437 (722)
Q Consensus 362 ~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 437 (722)
+.+..++|.+.+..+++.+ +.+...|+.....+.+.| ++++|...++...+ .+..+|+.+...+...|++++|++
T Consensus 55 ~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~ 133 (315)
T d2h6fa1 55 RDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE 133 (315)
T ss_dssp HTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred hCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHH
Confidence 3334444444444444432 223334444444444433 24555555554432 344555555555555666666666
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCC------HHHHHHHH
Q 004938 438 FFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL------LREALELV 510 (722)
Q Consensus 438 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~~A~~~~ 510 (722)
.++++++ +.|+ ...|..+...+.+.|++++|++.++.+.+ --+.+...|+.+..++.+.|. +++|++.+
T Consensus 134 ~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~--~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~ 209 (315)
T d2h6fa1 134 FIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYT 209 (315)
T ss_dssp HHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHH
T ss_pred HHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HCCccHHHHHHHHHHHHHccccchhhhhHHhHHHH
Confidence 6666655 2333 34555555566666666666666666654 223334455555544444333 56777777
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCch--HHHHHHHhhhC--CCcchHHHHHHH
Q 004938 511 ETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGA--LVLLSNIYAKD--KRWQDVGELRKS 578 (722)
Q Consensus 511 ~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~--~~~l~~~~~~~--g~~~~a~~~~~~ 578 (722)
.++ ...| +...|..+...+.. ...+++...+++++++.|+.... +..++.+|... +..+.+...+++
T Consensus 210 ~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~k 282 (315)
T d2h6fa1 210 LEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNK 282 (315)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 665 4445 56778777666544 44678888889998888876544 34566666443 444444444333
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.92 E-value=6.1e-08 Score=95.41 Aligned_cols=183 Identities=9% Similarity=-0.001 Sum_probs=145.3
Q ss_pred cCCHHHHHHHHHhcCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004938 398 CGSLESAREVFERMRR----RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473 (722)
Q Consensus 398 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 473 (722)
.+..++|..+|++..+ .+...|...+..+...|+.++|..+|++++..........|...+..+.+.|..+.|.++
T Consensus 77 ~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i 156 (308)
T d2onda1 77 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHH
Confidence 3456788888887643 456788989999999999999999999998743222245788999999999999999999
Q ss_pred HHHhHhhcCCCCCcchHHHHHHHH-HhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004938 474 FASMTNEYNIPPKYEHYGCMVDLF-GRANLLREALELVETM-P-FAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDP 550 (722)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 550 (722)
|+.+.+ ..+.+...|...+... ...|+.+.|..+|+++ . .+.+...|...+......|+++.|+.+|++++...|
T Consensus 157 ~~~al~--~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 157 FKKARE--DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHHT--STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHH--hCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 999986 3444555666555543 3468999999999988 2 234578999999999999999999999999999877
Q ss_pred CCCc----hHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 551 DHDG----ALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 551 ~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
.++. .+...+..-...|+.+.+.++.+++.+.
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6543 5666677667889999999999988764
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.86 E-value=8.2e-09 Score=98.93 Aligned_cols=212 Identities=11% Similarity=-0.018 Sum_probs=148.1
Q ss_pred hHHHHHHHHHHHcCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHH
Q 004938 367 DQAQRIHLYIDKNAFGG---DLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFN 440 (722)
Q Consensus 367 ~~a~~i~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 440 (722)
+.+..-+.+++...... ...++..+...|.+.|++++|.+.|++..+ .++.+|+.+..+|...|++++|+..|+
T Consensus 16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 95 (259)
T d1xnfa_ 16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 95 (259)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhh
Confidence 34444455555432111 234667788899999999999999998764 577899999999999999999999999
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 004938 441 KMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN 518 (722)
Q Consensus 441 ~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 518 (722)
+..+ +.|+ ..++..+..++...|++++|...|+...+. .+.+......+...+.+.+..+.+..+.... ...++
T Consensus 96 ~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (259)
T d1xnfa_ 96 SVLE--LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 171 (259)
T ss_dssp HHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC
T ss_pred HHHH--HHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchh
Confidence 9998 4565 457888889999999999999999999873 3344444444555555666555555444433 11222
Q ss_pred HHHHHHHHHHH----HHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 519 VVIWGSLMAAC----RVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 519 ~~~~~~ll~~~----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
...++. +..+ ...+..+.+...+.......|+...++..++.+|...|++++|.+.+++.....
T Consensus 172 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 172 QWGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp STHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 222221 1111 122334555555555555667777788899999999999999999999987654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.75 E-value=2.8e-09 Score=106.81 Aligned_cols=251 Identities=9% Similarity=-0.065 Sum_probs=177.6
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCCCCCChhhH-HH---HHHHH-------HccCCchHHHHHHHHHHHcCCCCChhHHH
Q 004938 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTM-LS---VISAC-------AHLGVLDQAQRIHLYIDKNAFGGDLRVNN 389 (722)
Q Consensus 321 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~---ll~~~-------~~~g~~~~a~~i~~~~~~~~~~~~~~~~~ 389 (722)
++......+..++|++++++.++. .|+..+. +. ++... ...|.+++|...++.+++.. +.+...+.
T Consensus 35 ~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~ 111 (334)
T d1dcea1 35 VFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWH 111 (334)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 333333334458999999998874 5766542 22 22222 23345778888888888764 45666777
Q ss_pred HHHHHHHhcC--CHHHHHHHHHhcCC---CChHHHHHH-HHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 004938 390 AIIDMYAKCG--SLESAREVFERMRR---RNVISWTSM-INAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACS 462 (722)
Q Consensus 390 ~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~ 462 (722)
.+...+...+ ++++|...++++.+ ++...|... ...+...+.+++|+..+++++.. .|+ ...|..+...+.
T Consensus 112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~--~p~~~~a~~~l~~~~~ 189 (334)
T d1dcea1 112 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLP 189 (334)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHHHHHHHHH
T ss_pred HhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 7777776665 48899999988753 456666544 46677789999999999988874 554 557888888888
Q ss_pred hcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004938 463 HAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM--PFAPNVVIWGSLMAACRVHGEIELAEF 540 (722)
Q Consensus 463 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~ 540 (722)
..|++++|...+....+. .|+ .......+...+..+++...+.+. ...++...+..+...+...|+.++|..
T Consensus 190 ~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 263 (334)
T d1dcea1 190 QLHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCK 263 (334)
T ss_dssp HHSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHH
Confidence 888887776555544431 111 122334455566667777776665 222344556667777888899999999
Q ss_pred HHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 541 AAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 541 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
.+.+.++.+|++..++..++.+|...|++++|.+.+++..+.
T Consensus 264 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 264 ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999774
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=1.1e-06 Score=79.06 Aligned_cols=140 Identities=10% Similarity=0.009 Sum_probs=106.2
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 004938 392 IDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEG 470 (722)
Q Consensus 392 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 470 (722)
...+...|+++.|.+.|.++..++..+|..+...|...|++++|++.|++.++ +.|+ ...|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccHHHH
Confidence 44567889999999999999888999999999999999999999999999988 4565 45788888899999999999
Q ss_pred HHHHHHhHhhcCCCCCcc-hHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004938 471 REIFASMTNEYNIPPKYE-HYGCMVDLFGRANLLREALELVETMPFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQL 548 (722)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 548 (722)
...|+.... ..+.+.. .|. ..| ...+++ ..++..+..++...|++++|.+.+++++++
T Consensus 90 ~~~~~kAl~--~~~~n~~~~~~-------~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 90 IKDLKEALI--QLRGNQLIDYK-------ILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHH--TTTTCSEEECG-------GGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH--hCccCchHHHH-------Hhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999998876 2232221 011 000 011111 245566777888999999999999999998
Q ss_pred CCCCC
Q 004938 549 DPDHD 553 (722)
Q Consensus 549 ~p~~~ 553 (722)
.|+..
T Consensus 150 ~~~~~ 154 (192)
T d1hh8a_ 150 KSEPR 154 (192)
T ss_dssp CCSGG
T ss_pred CCCcc
Confidence 88753
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=4.6e-07 Score=74.24 Aligned_cols=104 Identities=13% Similarity=0.051 Sum_probs=70.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH
Q 004938 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEI 535 (722)
Q Consensus 458 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 535 (722)
...+...|++++|+..|..+++ ..|.+...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--cCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 3455666777777777776665 23445566666667777777777777776665 3233 566777777777778888
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHHHh
Q 004938 536 ELAEFAAKQLLQLDPDHDGALVLLSNIY 563 (722)
Q Consensus 536 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 563 (722)
++|+..++++++++|+++.++..+.++-
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 8888888888888887776666666543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.52 E-value=1.5e-07 Score=85.98 Aligned_cols=102 Identities=10% Similarity=-0.063 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 004938 449 PNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN-VVIWGSLM 526 (722)
Q Consensus 449 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll 526 (722)
|+...+......+.+.|++++|+..|..+.+ ..|.+...|..+..+|.+.|++++|+..+++. .+.|+ ..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~--~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 4444455555555555555555555555554 22333444555555555555555555555444 33342 34455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCC
Q 004938 527 AACRVHGEIELAEFAAKQLLQLDPDH 552 (722)
Q Consensus 527 ~~~~~~g~~~~a~~~~~~~~~~~p~~ 552 (722)
.++...|++++|...++++++++|++
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~ 105 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQ 105 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 55555555555555555555554443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=2.3e-07 Score=76.17 Aligned_cols=91 Identities=14% Similarity=0.116 Sum_probs=83.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcc
Q 004938 493 MVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQ 570 (722)
Q Consensus 493 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 570 (722)
-...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 467788999999999999998 4455 57889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCC
Q 004938 571 DVGELRKSMKERG 583 (722)
Q Consensus 571 ~a~~~~~~m~~~g 583 (722)
+|...++...+..
T Consensus 89 ~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 89 EAKRTYEEGLKHE 101 (117)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998753
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.43 E-value=2.4e-07 Score=75.25 Aligned_cols=90 Identities=17% Similarity=0.007 Sum_probs=80.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCC
Q 004938 490 YGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDK 567 (722)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 567 (722)
+-.+...+.+.|++++|...+++. ...| +...|..+...+...|++++|+..++++++++|+++.++..++.+|...|
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence 345677788899999999999987 4456 57899999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHH
Q 004938 568 RWQDVGELRKSM 579 (722)
Q Consensus 568 ~~~~a~~~~~~m 579 (722)
++++|.+.+++.
T Consensus 99 ~~~~A~~~l~~~ 110 (112)
T d1hxia_ 99 NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999999875
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.41 E-value=3.6e-07 Score=83.25 Aligned_cols=97 Identities=12% Similarity=0.008 Sum_probs=61.9
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHH
Q 004938 485 PKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNI 562 (722)
Q Consensus 485 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 562 (722)
|+...+...+..|.+.|++++|+..|+++ ...| +...|..+..+|...|++++|+..++++++++|+++.+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 44444555566666666666666666655 3333 455666666666666666666666666666666666666666666
Q ss_pred hhhCCCcchHHHHHHHHHh
Q 004938 563 YAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 563 ~~~~g~~~~a~~~~~~m~~ 581 (722)
|...|++++|...+++..+
T Consensus 82 ~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 6666666666666666543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=1.1e-06 Score=76.63 Aligned_cols=116 Identities=12% Similarity=0.046 Sum_probs=89.5
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH
Q 004938 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEI 535 (722)
Q Consensus 458 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 535 (722)
.+.+.+.|++++|...|+.+.+ -.|.+...|..+..+|...|++++|++.|+++ ...| +..+|..++.++...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhccc--cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 4466778888888888888776 23456677788888888888888888888877 4455 467899999999999999
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHHHhh--hCCCcchHHHH
Q 004938 536 ELAEFAAKQLLQLDPDHDGALVLLSNIYA--KDKRWQDVGEL 575 (722)
Q Consensus 536 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~a~~~ 575 (722)
++|...++++++++|+++..+..+..+.. ..+.+++|...
T Consensus 95 ~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 95 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999888777765543 34456666544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.38 E-value=2e-06 Score=83.38 Aligned_cols=190 Identities=10% Similarity=0.005 Sum_probs=125.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCC--HHHHH
Q 004938 390 AIIDMYAKCGSLESAREVFERMRR-----RN----VISWTSMINAFAIHGDARNALIFFNKMKDESI---DPN--GVTFI 455 (722)
Q Consensus 390 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~ 455 (722)
.....|..+|++++|.+.|.+..+ .+ ..+|+.+...|.+.|++++|++.+++....-. .+. ..++.
T Consensus 42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 121 (290)
T d1qqea_ 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (290)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence 345667888888888888877653 22 25788888889999999999999987655211 111 23456
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHhHhhc---CCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCC---C----CH-HH
Q 004938 456 GVLYACS-HAGLVDEGREIFASMTNEY---NIPPK-YEHYGCMVDLFGRANLLREALELVETM-PFA---P----NV-VI 521 (722)
Q Consensus 456 ~ll~a~~-~~g~~~~a~~~~~~~~~~~---~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~---p----~~-~~ 521 (722)
.+...+. ..|++++|.+.++...+-+ +.++. ..++..+...|...|++++|++.++++ ... + .. ..
T Consensus 122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~ 201 (290)
T d1qqea_ 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (290)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHH
Confidence 6666664 4699999999998876421 11111 345778899999999999999999886 111 1 11 23
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCch-----HHHHHHHhhh--CCCcchHHHHHHHH
Q 004938 522 WGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGA-----LVLLSNIYAK--DKRWQDVGELRKSM 579 (722)
Q Consensus 522 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~--~g~~~~a~~~~~~m 579 (722)
+...+..+...|+++.|...++++.+++|..+.. ...++.+|.. .+.+++|...++.+
T Consensus 202 ~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3445556678899999999999999999864432 3455555544 35677777777543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=7e-07 Score=73.39 Aligned_cols=107 Identities=19% Similarity=0.000 Sum_probs=83.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCH---HHHHHHHHhC-CCCCCH---HHHHHHHH
Q 004938 455 IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLL---REALELVETM-PFAPNV---VIWGSLMA 527 (722)
Q Consensus 455 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~-~~~p~~---~~~~~ll~ 527 (722)
..+++.+...+++++|.+.|+.... .-|.+..++..+..++.+.++. ++|+.+++++ ...|+. .+|..|..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~--~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 3567777788888888888888886 3455677888888888765544 4688888886 444543 37888999
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHh
Q 004938 528 ACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIY 563 (722)
Q Consensus 528 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 563 (722)
+|...|++++|+..++++++++|++..+...+..+.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 999999999999999999999999987766655443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.34 E-value=5.2e-06 Score=80.28 Aligned_cols=164 Identities=12% Similarity=-0.006 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHH-cCCHHHHHHHHHHHHH----cCCCCC-H
Q 004938 387 VNNAIIDMYAKCGSLESAREVFERMRR-----RN----VISWTSMINAFAI-HGDARNALIFFNKMKD----ESIDPN-G 451 (722)
Q Consensus 387 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~-~g~~~~A~~~~~~m~~----~g~~p~-~ 451 (722)
+|+.+..+|.+.|++++|.+.+++..+ .+ ..++..+...|.. .|++++|++.|++..+ .+..+. .
T Consensus 79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~ 158 (290)
T d1qqea_ 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence 334444445555555555555444321 11 2334445555533 5777777777776643 111111 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCc-----chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC------H
Q 004938 452 VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY-----EHYGCMVDLFGRANLLREALELVETM-PFAPN------V 519 (722)
Q Consensus 452 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~------~ 519 (722)
.++..+...+...|++++|..+|+.+.......+.. ..+..++..+...|+++.|...+++. .+.|. .
T Consensus 159 ~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~ 238 (290)
T d1qqea_ 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred hHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHH
Confidence 346667777788888888888888776632111111 12334455566778888888888876 33332 2
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHccCC
Q 004938 520 VIWGSLMAACRV--HGEIELAEFAAKQLLQLDP 550 (722)
Q Consensus 520 ~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~p 550 (722)
.....++.++.. .+.+++|...|+++.+++|
T Consensus 239 ~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 234555666554 2347777777776666654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=1.2e-05 Score=72.03 Aligned_cols=119 Identities=13% Similarity=0.033 Sum_probs=80.7
Q ss_pred HHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 004938 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELA 538 (722)
Q Consensus 461 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 538 (722)
+...|++++|++.|..+ .+|+...|..+..+|...|++++|++.|++. .+.| +...|..+..++.+.|++++|
T Consensus 15 ~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHH
Confidence 34455555555555432 2344455555666666666666666666555 3344 466777888888888888888
Q ss_pred HHHHHHHHccCCCCC----------------chHHHHHHHhhhCCCcchHHHHHHHHHhCCC
Q 004938 539 EFAAKQLLQLDPDHD----------------GALVLLSNIYAKDKRWQDVGELRKSMKERGI 584 (722)
Q Consensus 539 ~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 584 (722)
...|+++++..|.+. ..+..++.+|...|++++|.+.++...+...
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 888888877655432 3467899999999999999999998876443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=1.2e-06 Score=76.25 Aligned_cols=92 Identities=11% Similarity=0.033 Sum_probs=83.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCc
Q 004938 492 CMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRW 569 (722)
Q Consensus 492 ~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 569 (722)
.....|.+.|++++|+..|++. ...| +...|..+...+...|++++|...++++++++|++..++..++.+|...|++
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 3466788999999999999988 4455 5789999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhCC
Q 004938 570 QDVGELRKSMKERG 583 (722)
Q Consensus 570 ~~a~~~~~~m~~~g 583 (722)
++|.+.+++..+..
T Consensus 95 ~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 95 RAALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999987753
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=5.3e-06 Score=72.83 Aligned_cols=134 Identities=14% Similarity=0.071 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHH
Q 004938 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL 496 (722)
Q Consensus 417 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 496 (722)
..+......+.+.|++++|+..|.+.+.. .|.... ..+.-......+. ...|+.+..+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~~------------~~~~~~~~~~~~~--------~~~~~nla~~ 71 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESS------------FSNEEAQKAQALR--------LASHLNLAMC 71 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCC------------CCSHHHHHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhccc------------cchHHHhhhchhH--------HHHHHHHHHH
Confidence 34555566777888888888888877662 111000 0000000111111 1246678888
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchH
Q 004938 497 FGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDV 572 (722)
Q Consensus 497 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 572 (722)
|.+.|++++|+..+++. .+.| ++..|..+..++...|++++|...|+++++++|+++.+...+..+....+...+.
T Consensus 72 y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 72 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 4556 6788999999999999999999999999999999999999998887766655544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.06 E-value=4.6e-05 Score=66.59 Aligned_cols=84 Identities=12% Similarity=-0.021 Sum_probs=70.2
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhh
Q 004938 487 YEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564 (722)
Q Consensus 487 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 564 (722)
...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|+..|+++++++|++..+...+..++.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 156 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 446777888899999999999999887 6666 46789999999999999999999999999999999888888877765
Q ss_pred hCCCcc
Q 004938 565 KDKRWQ 570 (722)
Q Consensus 565 ~~g~~~ 570 (722)
+.....
T Consensus 157 ~l~~~~ 162 (169)
T d1ihga1 157 KIKAQK 162 (169)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.05 E-value=2.4e-05 Score=68.37 Aligned_cols=93 Identities=14% Similarity=0.052 Sum_probs=75.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhC
Q 004938 489 HYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKD 566 (722)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 566 (722)
.|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++++++|+++.+...+..+....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 4666788889999999999999887 4444 5778999999999999999999999999999999999888888887766
Q ss_pred CCcc-hHHHHHHHHHh
Q 004938 567 KRWQ-DVGELRKSMKE 581 (722)
Q Consensus 567 g~~~-~a~~~~~~m~~ 581 (722)
+... ...+++..|-+
T Consensus 146 ~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 146 KEHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHh
Confidence 6554 34455555543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=2.7e-05 Score=68.16 Aligned_cols=112 Identities=6% Similarity=-0.045 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 004938 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH 532 (722)
Q Consensus 453 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 532 (722)
.+......+.+.|++++|+..|...+......+.... . .......+ ...+|..+...|.+.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~--~----------~~~~~~~~-------~~~~~~nla~~y~k~ 75 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN--E----------EAQKAQAL-------RLASHLNLAMCHLKL 75 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS--H----------HHHHHHHH-------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccch--H----------HHhhhchh-------HHHHHHHHHHHHHhh
Confidence 3445556777788888888888877763222221110 0 00000000 124567788889999
Q ss_pred CCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 533 GEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 533 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
|++++|+..++++++++|+++.++..++.+|...|++++|...++...+..
T Consensus 76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999987743
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.01 E-value=0.0005 Score=64.65 Aligned_cols=229 Identities=10% Similarity=-0.025 Sum_probs=127.6
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCCchHHHHHHHHHHHcCCCCChhHHH
Q 004938 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH----LGVLDQAQRIHLYIDKNAFGGDLRVNN 389 (722)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~i~~~~~~~~~~~~~~~~~ 389 (722)
|+..+..|...+.+.+++++|+++|++..+.| |...+..+...+.. ..+...+...+....+.+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 34556667777777788888888888777665 33333334333433 234455555555444433 111222
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcC
Q 004938 390 AIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS----HAG 465 (722)
Q Consensus 390 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~~g 465 (722)
.+...+... ....++.+.|...+++....|.. .....+...+. ...
T Consensus 75 ~l~~~~~~~---------------------------~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~ 124 (265)
T d1ouva_ 75 LLGNLYYSG---------------------------QGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTR 124 (265)
T ss_dssp HHHHHHHHT---------------------------SSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCC
T ss_pred ccccccccc---------------------------cccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccc
Confidence 222222110 00133455555555555554321 11111111111 233
Q ss_pred CHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHH
Q 004938 466 LVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR----ANLLREALELVETMPFAPNVVIWGSLMAACRV----HGEIEL 537 (722)
Q Consensus 466 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~ 537 (722)
....+...+..... ..+...+..|...|.. ..+...+...++...-..+...+..|...+.. ..++++
T Consensus 125 ~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~ 200 (265)
T d1ouva_ 125 DFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKE 200 (265)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred hhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhh
Confidence 44555555554443 2334455555555553 44556666666655223356666666655554 568999
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHhhh----CCCcchHHHHHHHHHhCCC
Q 004938 538 AEFAAKQLLQLDPDHDGALVLLSNIYAK----DKRWQDVGELRKSMKERGI 584 (722)
Q Consensus 538 a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 584 (722)
|...|+++.+.+ ++..+..|+.+|.. ..+.++|.+.+++..+.|.
T Consensus 201 A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 201 ALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 999999998875 46788899999975 3489999999999988774
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.98 E-value=4.2e-05 Score=65.52 Aligned_cols=112 Identities=10% Similarity=-0.015 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 004938 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH 532 (722)
Q Consensus 453 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 532 (722)
.+..-...+.+.|++++|...|..+..-....+.... .. ....... ....+|..+...|.+.
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~--~~------------~~~~~~~----~~~~~~~Nla~~~~~l 80 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDD--QI------------LLDKKKN----IEISCNLNLATCYNKN 80 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCC--HH------------HHHHHHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhh--HH------------HHHhhhh----HHHHHHhhHHHHHHHh
Confidence 4445556677778888888888777652211111000 00 0000000 0124566777788888
Q ss_pred CCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 533 GEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 533 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
|++++|+..++++++++|++..+|..++.+|...|++++|...++...+.
T Consensus 81 ~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 81 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88999999999998889988888888899999999999998888887764
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=8e-06 Score=67.75 Aligned_cols=92 Identities=11% Similarity=0.126 Sum_probs=75.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCch-------HHHHH
Q 004938 490 YGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGA-------LVLLS 560 (722)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-------~~~l~ 560 (722)
+..+.+.|.+.|++++|++.|++. ...| +..+|..+..+|...|++++|+..++++++++|+++.. |..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 345677888888999999888877 4444 57889999999999999999999999999999887764 45567
Q ss_pred HHhhhCCCcchHHHHHHHHHh
Q 004938 561 NIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 561 ~~~~~~g~~~~a~~~~~~m~~ 581 (722)
.++...+++++|.+.+++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 778888899999999887654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.96 E-value=2.7e-05 Score=66.80 Aligned_cols=127 Identities=11% Similarity=-0.016 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 004938 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495 (722)
Q Consensus 416 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 495 (722)
...+......+.+.|++.+|+..|.+.+.. -|.... ..-.........+ ...+|..+..
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~~-----------~~~~~~~~~~~~~--------~~~~~~Nla~ 75 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEE-----------WDDQILLDKKKNI--------EISCNLNLAT 75 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTT-----------CCCHHHHHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchhh-----------hhhHHHHHhhhhH--------HHHHHhhHHH
Confidence 346777788899999999999999998873 221100 0000000000001 1235677888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHh
Q 004938 496 LFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIY 563 (722)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 563 (722)
+|.+.|++++|++.+++. ...| +..+|..+..++...|++++|...|+++++++|++..+...+..+.
T Consensus 76 ~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 76 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999887 5556 5789999999999999999999999999999999988777766554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=1.5e-06 Score=91.25 Aligned_cols=108 Identities=9% Similarity=-0.062 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 004938 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAACR 530 (722)
Q Consensus 453 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~ 530 (722)
.+..+...+.+.|+.++|...+...... .| ...+..+++++...|++++|...+++. .+.|+ ...|+.|...+.
T Consensus 122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 122 KSSQLGIISNKQTHTSAIVKPQSSSCSY---IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS 197 (497)
T ss_dssp ---------------------CCHHHHH---HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH
T ss_pred HHHHhHHHHHhCCCHHHHHHHHHHHhCC---CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 3444444555555555555554443321 01 134445555555556666666655555 33343 345555555555
Q ss_pred HcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhh
Q 004938 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564 (722)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 564 (722)
..|+..+|...|.+++..+|+.+.++.+|..++.
T Consensus 198 ~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 198 SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 5666666666666666655555555555555543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=2.5e-05 Score=63.77 Aligned_cols=93 Identities=6% Similarity=-0.026 Sum_probs=77.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CCHHHHHHHHHHHHccCCCCC--chHHHHHHH
Q 004938 490 YGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVH---GEIELAEFAAKQLLQLDPDHD--GALVLLSNI 562 (722)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~ 562 (722)
...+++.+...+++++|.+.|++. ...| +..++..+..++.+. +++++|+.+++++++.+|.+. .++..|+.+
T Consensus 2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 346788888999999999999998 4445 567888888888654 456679999999999987653 478899999
Q ss_pred hhhCCCcchHHHHHHHHHhC
Q 004938 563 YAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 563 ~~~~g~~~~a~~~~~~m~~~ 582 (722)
|.+.|++++|.+.++++.+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 99999999999999999884
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.82 E-value=0.0095 Score=57.11 Aligned_cols=135 Identities=8% Similarity=0.005 Sum_probs=60.7
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHH
Q 004938 80 PPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLV 159 (722)
Q Consensus 80 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 159 (722)
||..--..+..-|-+.|.++.|..+|..+. -|..++..+.+.+++..|..+.... .+..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence 444434455555666666666666666443 2555666666666666655544322 2444555566
Q ss_pred HHHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHcc
Q 004938 160 GMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRA 231 (722)
Q Consensus 160 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 231 (722)
..+.+......|.-. ......+...-..++..|-..|.+++.+.++...... -.++...++.++..+++.
T Consensus 77 ~~l~~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 77 FACVDGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHHTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred HHHHhCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence 666555544433221 1111122223345566666666666666666654322 133444555555555554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.81 E-value=5.8e-05 Score=65.91 Aligned_cols=110 Identities=12% Similarity=0.001 Sum_probs=80.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHc
Q 004938 454 FIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP-NVVIWGSLMAACRVH 532 (722)
Q Consensus 454 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~ 532 (722)
+......+...|++++|+..|.++.+. ...........+. ....| +...|..+...+.+.
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~-------------~~~~~~~~~~~~~------~~~~~~~~~~~~nla~~~~~~ 90 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY-------------VEGSRAAAEDADG------AKLQPVALSCVLNIGACKLKM 90 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-------------HHHHHHHSCHHHH------GGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-------------hhhhhhhhhhHHH------HHhChhhHHHHHHHHHHHHhh
Confidence 444555667777888887777766541 0000001111111 11223 345778888889999
Q ss_pred CCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 533 GEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 533 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
|++++|+..++++++++|+++.+|..++.+|...|++++|.+.++...+.
T Consensus 91 ~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 91 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999874
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.78 E-value=2.3e-05 Score=66.41 Aligned_cols=124 Identities=13% Similarity=0.024 Sum_probs=69.7
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHH
Q 004938 426 FAIHGDARNALIFFNKMKDESIDPNG-VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR 504 (722)
Q Consensus 426 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 504 (722)
|-+.+.+++|+..|++..+ +.|+. ..+..+..++...+++..+.+ ..+.++
T Consensus 7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e--------------------------~~~~~~ 58 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISD--------------------------AKQMIQ 58 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHH--------------------------HHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhH--------------------------HHHHHH
Confidence 3445566777777777766 34543 345555555543322211110 112223
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcch
Q 004938 505 EALELVETM-PFAP-NVVIWGSLMAACRVH-----------GEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQD 571 (722)
Q Consensus 505 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 571 (722)
+|++.+++. .+.| +..+|..+..+|... +++++|...|+++++++|++..++..|... ..
T Consensus 59 ~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~k 131 (145)
T d1zu2a1 59 EAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AK 131 (145)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HT
T ss_pred HHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HH
Confidence 444444433 2233 234454454444433 246889999999999999998777666655 36
Q ss_pred HHHHHHHHHhCCC
Q 004938 572 VGELRKSMKERGI 584 (722)
Q Consensus 572 a~~~~~~m~~~g~ 584 (722)
|.+++.+..++|+
T Consensus 132 a~~~~~e~~k~~~ 144 (145)
T d1zu2a1 132 APQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHhc
Confidence 6677777777664
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.77 E-value=0.00018 Score=62.55 Aligned_cols=112 Identities=10% Similarity=-0.044 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 004938 452 VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRV 531 (722)
Q Consensus 452 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~ 531 (722)
..+......+.+.|++++|...|.....-....+....- .......+ ...+|..+..++..
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~------------~~~~~~~~-------~~~~~~Nla~~~~~ 76 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEK------------ESKASESF-------LLAAFLNLAMCYLK 76 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHH------------HHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchh------------hhhhcchh-------HHHHHHhHHHHHHH
Confidence 345555666777777777777776665421111111000 00000000 12356667778899
Q ss_pred cCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 532 HGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 532 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
.|++++|+..++++++++|++..++..++.+|...|++++|.+.++...+.
T Consensus 77 l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 77 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred hhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998774
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.76 E-value=0.005 Score=57.40 Aligned_cols=224 Identities=11% Similarity=-0.021 Sum_probs=125.2
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHhccCCC-CcchHHHHHHHHHh----cCCchHHHHHHHHHHhCCCCCChhhHHHHH
Q 004938 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEK-DLICWSAMISGYAE----NNHPQEALKLFNEMQVCGMKPDKVTMLSVI 357 (722)
Q Consensus 283 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 357 (722)
|+..+..+...+.+.++.++|++.|++..+. |..++..|...|.. ..+...|...+......+. ......+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~---~~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY---SNGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc---cchhhccc
Confidence 4556778888889999999999999988554 66777777777776 5678889999988877652 22233333
Q ss_pred HHHH----ccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Q 004938 358 SACA----HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK----CGSLESAREVFERMR-RRNVISWTSMINAFAI 428 (722)
Q Consensus 358 ~~~~----~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~ 428 (722)
..+. ...+.+.|...+....+.|.. .....+...+.. ......|...+.... ..+...+..+...|..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~ 154 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 154 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhcc
Confidence 3332 245677788888877776532 222223233322 233444555444433 2444555555555443
Q ss_pred ----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh----c
Q 004938 429 ----HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR----A 500 (722)
Q Consensus 429 ----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 500 (722)
..+...+...++...+.| +... ...|..+|.. .
T Consensus 155 ~~~~~~~~~~~~~~~~~a~~~g---~~~A------------------------------------~~~lg~~y~~g~~~~ 195 (265)
T d1ouva_ 155 GRGTPKDLKKALASYDKACDLK---DSPG------------------------------------CFNAGNMYHHGEGAT 195 (265)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHH------------------------------------HHHHHHHHHHTCSSC
T ss_pred CCCcccccccchhhhhcccccc---cccc------------------------------------ccchhhhcccCcccc
Confidence 223334444444433322 2222 2223222222 3
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCC
Q 004938 501 NLLREALELVETMPFAPNVVIWGSLMAACRV----HGEIELAEFAAKQLLQLDPD 551 (722)
Q Consensus 501 g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~ 551 (722)
.++++|...|++....-++..+..|...|.. .++.++|...|+++.+.++.
T Consensus 196 ~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 196 KNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred cchhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 4555666666555212244455555555543 33677777777777766653
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.73 E-value=7e-05 Score=60.09 Aligned_cols=84 Identities=7% Similarity=-0.013 Sum_probs=37.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCC
Q 004938 424 NAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL 502 (722)
Q Consensus 424 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 502 (722)
..+.+.|++++|+..|++.+.. .|+ ...|..+..++.+.|++++|+..|+.+.+ ..|.+...+..+...|...|+
T Consensus 24 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 24 LSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhcccccccc--cccccccchHHHHHHHHHCCC
Confidence 3344455555555555554442 332 33444444445555555555555554443 122233444444444444444
Q ss_pred HHHHHHHHH
Q 004938 503 LREALELVE 511 (722)
Q Consensus 503 ~~~A~~~~~ 511 (722)
+++|++.++
T Consensus 100 ~~~A~~~l~ 108 (112)
T d1hxia_ 100 ANAALASLR 108 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.66 E-value=0.027 Score=53.76 Aligned_cols=248 Identities=9% Similarity=-0.003 Sum_probs=105.5
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 004938 115 IDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYF 194 (722)
Q Consensus 115 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~ 194 (722)
||..--..+..-|.+.|.++.|..++..+. -|..++..|.+.+++..|.+++.+.. +..+|..+...+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence 344444455555556666666666555332 13445555555666666555554332 3345555555555
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHH
Q 004938 195 QNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKG 274 (722)
Q Consensus 195 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 274 (722)
+.....-| .+...+...+......++..|-..|.++....+++..+.. -..+..+++-++..|++.+. ++-.+
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~kl~e 153 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QKMRE 153 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HHHHH
T ss_pred hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HHHHH
Confidence 55444322 1112223334444455555555555555555555554432 13344455555555555432 22222
Q ss_pred HHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHH
Q 004938 275 LFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTML 354 (722)
Q Consensus 275 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 354 (722)
.+.... +.. +++.+.++.++ ...|..++..|.+.|++++|+.+. ... .++.....
T Consensus 154 ~l~~~s--~~y-------------~~~k~~~~c~~-----~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~ 208 (336)
T d1b89a_ 154 HLELFW--SRV-------------NIPKVLRAAEQ-----AHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEG 208 (336)
T ss_dssp HHHHHS--TTS-------------CHHHHHHHHHT-----TTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHH
T ss_pred HHHhcc--ccC-------------CHHHHHHHHHH-----cCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHH
Confidence 211110 001 11112211111 123555566666666666665543 221 34444445
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 004938 355 SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409 (722)
Q Consensus 355 ~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 409 (722)
..+..+.+..+.+..-++....++. .| ...+.|+......-+..+..+.|+
T Consensus 209 ~f~e~~~k~~N~e~~~~~i~~yL~~--~p--~~i~~lL~~v~~~~d~~r~V~~~~ 259 (336)
T d1b89a_ 209 QFKDIITKVANVELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYFS 259 (336)
T ss_dssp HHHHHHHHCSSTHHHHHHHHHHHHH--CG--GGHHHHHHHHGGGCCHHHHHHHHH
T ss_pred HHHHHHHccCChHHHHHHHHHHHHc--CH--HHHHHHHHHhccCCCHHHHHHHHH
Confidence 5555666666666555555544442 12 233444444444444444444443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.64 E-value=0.00011 Score=64.54 Aligned_cols=115 Identities=12% Similarity=0.056 Sum_probs=82.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 004938 455 IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534 (722)
Q Consensus 455 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 534 (722)
..........|++++|.+.|.....-+.-++-.. +...........-++. .....+..+...+...|+
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~--------~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD--------LRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--------GTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCccccccc--------CcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCC
Confidence 3344577889999999999999886322111100 0000111111111111 123567888999999999
Q ss_pred HHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 535 IELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 535 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
+++|...++++++.+|.+...|..++.+|...|++++|.+.|++..+
T Consensus 83 ~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 83 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999854
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.50 E-value=0.00026 Score=58.17 Aligned_cols=104 Identities=14% Similarity=0.051 Sum_probs=58.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHH
Q 004938 419 WTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLF 497 (722)
Q Consensus 419 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 497 (722)
+..+...|.+.|++++|+..|.+.++. .|+ ...+..+..++.+.|++++|.+.++.+++. .+.+...+..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~~~~~~~~~~~---- 78 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV--GRENREDYRQI---- 78 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHSTTCHHHH----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHh--CcccHHHHHHH----
Confidence 444555566666666666666666653 333 445555566666666666666666655541 01111111111
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004938 498 GRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551 (722)
Q Consensus 498 ~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 551 (722)
..+|..+...+...+++++|...+++.+..+|+
T Consensus 79 ---------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 79 ---------------------AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp ---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred ---------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 134555666667777777777777777776654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.47 E-value=0.00017 Score=61.74 Aligned_cols=64 Identities=14% Similarity=-0.069 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-----------CchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 519 VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH-----------DGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 519 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
...|+.+..++...|++++|...+++++++.|+. ..++..++.+|...|++++|.+.+++..+.
T Consensus 55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 55 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567888888899999999999988888764421 225778999999999999999999998763
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.44 E-value=0.00018 Score=55.58 Aligned_cols=71 Identities=21% Similarity=0.160 Sum_probs=51.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHH
Q 004938 492 CMVDLFGRANLLREALELVETM--------PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNI 562 (722)
Q Consensus 492 ~li~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 562 (722)
.++..+.+.|++++|...|++. ...++ ..++..|..++.+.|++++|+..++++++++|+++.++.++...
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~ 89 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYF 89 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 3444555555555555555443 11223 46788899999999999999999999999999999888877543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.43 E-value=3.7e-05 Score=65.08 Aligned_cols=84 Identities=15% Similarity=0.102 Sum_probs=58.4
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhC
Q 004938 499 RANLLREALELVETM-PFAP-NVVIWGSLMAACRV----------HGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKD 566 (722)
Q Consensus 499 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~----------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 566 (722)
|.+.+++|++.+++. ...| +..+|..+..++.. .+.+++|+..++++++++|+++.+|..++.+|...
T Consensus 9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHc
Confidence 444455555555554 2333 33444444444432 34568999999999999999999999999999887
Q ss_pred CC-----------cchHHHHHHHHHhC
Q 004938 567 KR-----------WQDVGELRKSMKER 582 (722)
Q Consensus 567 g~-----------~~~a~~~~~~m~~~ 582 (722)
|+ +++|.+.+++..+.
T Consensus 89 g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 89 AFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHhHHHhhhhhhccccc
Confidence 64 57788888877764
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.30 E-value=3.4e-05 Score=80.64 Aligned_cols=260 Identities=8% Similarity=-0.080 Sum_probs=136.5
Q ss_pred HHHHHHhccCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHH
Q 004938 302 DARLIFDQMVE---KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378 (722)
Q Consensus 302 ~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~ 378 (722)
+|.+.|++... ....+|..+...+...|++++| |++++.. .|+...-..+...+- ...+..+.+.++...+
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e~~Lw-~~~y~~~ie~~r~~~k 77 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVEQDLW-NHAFKNQITTLQGQAK 77 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHHHHHH-HHHTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHHHHHH-HHHHHHHHHHHHHhcc
Confidence 45666665532 2345666777778888888776 6666543 232111000000000 1123445555665555
Q ss_pred cCCCCChhHHHH--HHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004938 379 NAFGGDLRVNNA--IIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT 453 (722)
Q Consensus 379 ~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 453 (722)
....++..-... +...+...+.++.|...+..... ++...|..+...+.+.|+.++|...+++.... .| ..+
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~~~ 154 (497)
T d1ya0a1 78 NRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC-QHC 154 (497)
T ss_dssp CSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHH--HH-HHH
T ss_pred cccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-HHH
Confidence 433333322221 12223335566777766665443 45567888888888999999999888776542 22 346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHH
Q 004938 454 FIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-P-FAPNVVIWGSLMAACRV 531 (722)
Q Consensus 454 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~ 531 (722)
+..+...+...|++++|...|..+.+ -.|.+...|+.|..+|...|+..+|...|.+. . ..|-..++..|...+.+
T Consensus 155 ~~~LG~l~~~~~~~~~A~~~y~~A~~--l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 155 LVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHH--HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 77788899999999999999999987 34556789999999999999999999999887 3 34667888888777654
Q ss_pred cCCHHHHHHHHHHHHccCCC---CCchHHHHHHHhhhCCCcchHHHHHHHH
Q 004938 532 HGEIELAEFAAKQLLQLDPD---HDGALVLLSNIYAKDKRWQDVGELRKSM 579 (722)
Q Consensus 532 ~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m 579 (722)
..+...+ ....+. ....+..+...+.....+++..++.+.+
T Consensus 233 ~~~~~~~-------~~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~ 276 (497)
T d1ya0a1 233 ALESRDE-------VKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKL 276 (497)
T ss_dssp HTTSCCC-------CCSSCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred hhhhhhh-------hccccccchHHHHHHHHHHHHHhCCchhhHHHHHHHH
Confidence 3321110 000111 1124455556666677777776665544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.17 E-value=0.0004 Score=64.94 Aligned_cols=126 Identities=12% Similarity=0.008 Sum_probs=81.6
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHH
Q 004938 427 AIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLRE 505 (722)
Q Consensus 427 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 505 (722)
.+.|++++|+..+++.++. .|+ ...+..+...++..|++++|...|+...+. .+.+...+..+..++...+..++
T Consensus 7 L~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHH
Confidence 3567888888888887774 554 456777777888888888888888877752 22233444455555554554444
Q ss_pred HHHHHHhC--CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchH
Q 004938 506 ALELVETM--PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL 556 (722)
Q Consensus 506 A~~~~~~~--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 556 (722)
+..-.... ...|+ ...+......+...|+.++|...++++.+..|+.+..+
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 43332222 12332 23444455667788999999999999999999877543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.07 E-value=0.0016 Score=55.38 Aligned_cols=33 Identities=15% Similarity=-0.074 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCC
Q 004938 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD 553 (722)
Q Consensus 521 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 553 (722)
.|..+..++...|++++|...|++++++.|+..
T Consensus 102 a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~ 134 (156)
T d2hr2a1 102 AVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 134 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 567788899999999999999999999876543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.92 E-value=0.0044 Score=53.75 Aligned_cols=56 Identities=13% Similarity=0.065 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004938 490 YGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQL 545 (722)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 545 (722)
+..++..+.+.|++++|+..++++ ...| +...|..++.++...|+.++|++.|+++
T Consensus 70 ~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 70 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 444555555555555555555554 3333 3455555555555555555555555554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.80 E-value=0.00027 Score=66.18 Aligned_cols=120 Identities=12% Similarity=0.069 Sum_probs=88.5
Q ss_pred HhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 004938 462 SHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAACRVHGEIELAE 539 (722)
Q Consensus 462 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~ 539 (722)
.+.|++++|+..++...+ .-|.+...+..++.+|++.|++++|.+.++.. ...|+ ...+..+...+...+..+++.
T Consensus 7 L~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence 467999999999999997 56677899999999999999999999999998 55665 456666655555444444333
Q ss_pred HHHHHHHc-cCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 540 FAAKQLLQ-LDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 540 ~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
....+... .+|++...+...+.++...|+.++|.+.++++.+..
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 32222111 234444455667888899999999999999987753
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.80 E-value=0.0025 Score=48.69 Aligned_cols=63 Identities=16% Similarity=-0.042 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-------CchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 520 VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH-------DGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 520 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
..+-.++..+.+.|++++|...+++++++.|++ ..++..|+.+|.+.|++++|.+.++++.+.
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 344567888999999999999999999876554 346889999999999999999999999874
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.92 E-value=0.25 Score=38.20 Aligned_cols=141 Identities=9% Similarity=0.069 Sum_probs=100.3
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHH
Q 004938 426 FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLRE 505 (722)
Q Consensus 426 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 505 (722)
+...|..++..++..+.... .+..-|+.++--....-+-+...+.++.+-+-+.+. .++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHH
Confidence 34567888888888887763 344556666665566666666777777665533332 3444444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCCc
Q 004938 506 ALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGIL 585 (722)
Q Consensus 506 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 585 (722)
....+-.+. .+....+..++...++|+-+.-.++++.+++.+.-++.....++++|.+.|...++.+++.+.-++|++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 444444443 233445666788889999999999999988877667888999999999999999999999999999975
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.80 E-value=2.2 Score=42.11 Aligned_cols=115 Identities=13% Similarity=0.016 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHHcC-CCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHH
Q 004938 430 GDARNALIFFNKMKDES-IDPNGVT--FIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREA 506 (722)
Q Consensus 430 g~~~~A~~~~~~m~~~g-~~p~~~t--~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 506 (722)
.+.+.|..++....... ..++... ...+.......+..+.+..++...... ..+.....-++....+.+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc---ccchHHHHHHHHHHHHcCChHHH
Confidence 46777777777765532 2222111 111222223445566677666665442 22333333344455567788888
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004938 507 LELVETMPFAPN--VVIWGSLMAACRVHGEIELAEFAAKQLLQ 547 (722)
Q Consensus 507 ~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 547 (722)
...++.++..|. ..-.-=+..+....|+.+.|...|+.+..
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 888888753332 12112355667778888888888887764
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.38 E-value=0.36 Score=38.57 Aligned_cols=83 Identities=7% Similarity=-0.124 Sum_probs=52.6
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhh----CCCcch
Q 004938 500 ANLLREALELVETMPFAPNVVIWGSLMAACRV----HGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAK----DKRWQD 571 (722)
Q Consensus 500 ~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~ 571 (722)
..+.++|.+.+++....-++.....|...|.. ..|.++|.+.++++.+.+ ++.....|+.+|.. ..+.++
T Consensus 36 ~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~ 113 (133)
T d1klxa_ 36 QINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQ 113 (133)
T ss_dssp TSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred ccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHH
Confidence 34555666666555212244444444444443 456788888888887654 45567778888766 457788
Q ss_pred HHHHHHHHHhCCC
Q 004938 572 VGELRKSMKERGI 584 (722)
Q Consensus 572 a~~~~~~m~~~g~ 584 (722)
|.+.+++..+.|.
T Consensus 114 A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 114 AVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCC
Confidence 8888888877764
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=91.65 E-value=2.2 Score=32.80 Aligned_cols=139 Identities=12% Similarity=0.030 Sum_probs=81.8
Q ss_pred HhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 004938 326 AENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAR 405 (722)
Q Consensus 326 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 405 (722)
.-.|..++..++..+.... .+..-|+.++--....-+-+...+.++.+-+. .| ..+|+++....
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~vv 76 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVV 76 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHHHH
Confidence 3446666666666665542 23334444443333333434333333333221 11 12455555555
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCC
Q 004938 406 EVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNI 483 (722)
Q Consensus 406 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 483 (722)
..+-.+-. +....+.-++.+.++|+-+.-.++++.+.+. -+|+......+..||-+.|...++.+++.++-++ |+
T Consensus 77 ~C~~~~n~-~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~-G~ 151 (161)
T d1wy6a1 77 ECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 151 (161)
T ss_dssp HHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH-hH
Confidence 54444432 3344555667788888888888888886664 4777888888888999999999988888888763 54
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=91.29 E-value=1 Score=35.63 Aligned_cols=16 Identities=6% Similarity=0.117 Sum_probs=10.2
Q ss_pred CchHHHHHHHHHHhCC
Q 004938 330 HPQEALKLFNEMQVCG 345 (722)
Q Consensus 330 ~~~~A~~~~~~m~~~g 345 (722)
++++|+++|++..+.|
T Consensus 8 d~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 4566677776666655
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.97 E-value=0.61 Score=36.31 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=37.8
Q ss_pred HHHHHHHHhC-CCCC-CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchH
Q 004938 504 REALELVETM-PFAP-NV-VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL 556 (722)
Q Consensus 504 ~~A~~~~~~~-~~~p-~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 556 (722)
++++.++++. ...| +. ..|-.|.-+|.+.|++++|...++++++.+|++..+.
T Consensus 55 ~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~ 110 (124)
T d2pqrb1 55 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 110 (124)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence 3455555544 1123 32 4666778889999999999999999999999986443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.80 E-value=0.62 Score=36.23 Aligned_cols=66 Identities=8% Similarity=-0.064 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHccCCCCC-chHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 517 PNVVIWGSLMAACRVH---GEIELAEFAAKQLLQLDPDHD-GALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 517 p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
|..-+.-....++.+. .+.++|+.+++.++..+|.+. ..++.|+-+|.+.|++++|.+.++.+.+.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4444444455555543 457899999999999998764 67789999999999999999999999874
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=89.63 E-value=9.9 Score=36.97 Aligned_cols=324 Identities=7% Similarity=-0.022 Sum_probs=160.4
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC-chhhHHHHHHHHHhCCC
Q 004938 89 IRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGS-DPFVQTGLVGMYGACGK 167 (722)
Q Consensus 89 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~ 167 (722)
+.-..++|+...+..+...+... | -..|...-..-...++. ...++...+.+..-.| ........+..+.+.++
T Consensus 13 a~~a~~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~-~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~ 87 (450)
T d1qsaa1 13 IKQAWDNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQ-PAVTVTNFVRANPTLPPARTLQSRFVNELARRED 87 (450)
T ss_dssp HHHHHHTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccC-CHHHHHHHHHHCCCChhHHHHHHHHHHHHHhccC
Confidence 34456778888877777766321 2 22232222211222211 1123333333321111 11223344567788888
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 004938 168 ILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN 247 (722)
Q Consensus 168 ~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 247 (722)
+...+..+..-+ .++..--....+....|+.++|...+...-..|.. ..+....++....+.
T Consensus 88 w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-----------------~p~~c~~l~~~~~~~ 149 (450)
T d1qsaa1 88 WRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-----------------QPNACDKLFSVWRAS 149 (450)
T ss_dssp HHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-----------------CCTHHHHHHHHHHHT
T ss_pred HHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----------------CchHHHHHHHHHHhc
Confidence 888777664322 13333335667777889988888887777544421 122233445545554
Q ss_pred CCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 004938 248 NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAE 327 (722)
Q Consensus 248 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 327 (722)
|. .+...+-.-+......|+...|..+...+...........+.....-..+.... ... ..+......+..++.+
T Consensus 150 ~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~---~~~-~~~~~~~~~~~~~l~r 224 (450)
T d1qsaa1 150 GK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFA---RTT-GATDFTRQMAAVAFAS 224 (450)
T ss_dssp TC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHH---HHS-CCCHHHHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHH---hcC-CCChhhhHHHHHHHHH
Confidence 43 344444455666777788999999887776555555555555554433333322 111 1222222223333322
Q ss_pred --cCCchHHHHHHHHHHhCCCCCChhhHHHHHHHH----HccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 004938 328 --NNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC----AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSL 401 (722)
Q Consensus 328 --~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~----~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 401 (722)
..+.+.|..++........ .+......+-... ...+..+.+..........+ .+.......+......+++
T Consensus 225 la~~d~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~ 301 (450)
T d1qsaa1 225 VARQDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDR 301 (450)
T ss_dssp HHHHCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCH
T ss_pred HhccChhHHHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCCh
Confidence 2456677777766654321 1222222222111 23344555555555544432 2333333344445555666
Q ss_pred HHHHHHHHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004938 402 ESAREVFERMRRRN---VISWTSMINAFAIHGDARNALIFFNKMK 443 (722)
Q Consensus 402 ~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~ 443 (722)
..+...|+.|.... ..-.-=+..++...|+.++|...|....
T Consensus 302 ~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a 346 (450)
T d1qsaa1 302 RGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (450)
T ss_dssp HHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence 66666666665311 1111223455566666666666666654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.71 E-value=3.4 Score=30.07 Aligned_cols=63 Identities=17% Similarity=0.215 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 004938 431 DARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495 (722)
Q Consensus 431 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 495 (722)
+.-++.+-++.+....+.|+.....+.+.||.+.+++.-|.++|+.++.+.+ ++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 4456667777777777899999999999999999999999999999887533 44567776654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.88 E-value=3.8 Score=29.81 Aligned_cols=63 Identities=10% Similarity=0.061 Sum_probs=46.6
Q ss_pred CchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHH
Q 004938 97 RPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160 (722)
Q Consensus 97 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 160 (722)
+.-+..+-++.+......|++....+.|++|.|.+++..|.++++-+.... .++...|..++.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 334566677777777888999999999999999999999999998876542 334556665543
|